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-rw-r--r--tools/h5tools.c1214
1 files changed, 977 insertions, 237 deletions
diff --git a/tools/h5tools.c b/tools/h5tools.c
index 9b5dab5..73ef807 100644
--- a/tools/h5tools.c
+++ b/tools/h5tools.c
@@ -17,6 +17,14 @@
#include <string.h>
#include <H5private.h>
+
+/*
+ taken from h5dumputil.c
+*/
+
+int indent = 0;
+int compound_data=0;
+
/*
* If REPEAT_VERBOSE is defined then character strings will be printed so
* that repeated character sequences like "AAAAAAAAAA" are displayed as
@@ -455,242 +463,334 @@ h5dump_sprint(h5dump_str_t *str/*in,out*/, const h5dump_t *info,
sprintf(fmt_ullong, "%%%su", PRINTF_LL_WIDTH);
}
- /* Append value depending on data type */
- start = h5dump_str_len(str);
- if (H5Tequal(type, H5T_NATIVE_DOUBLE)) {
- h5dump_str_append(str, OPT(info->fmt_double, "%g"), *((double*)vp));
-
- } else if (H5Tequal(type, H5T_NATIVE_FLOAT)) {
- h5dump_str_append(str, OPT(info->fmt_double, "%g"), *((float*)vp));
-
- } else if (info->ascii &&
- (H5Tequal(type, H5T_NATIVE_SCHAR) ||
- H5Tequal(type, H5T_NATIVE_UCHAR))) {
- switch (*((char*)vp)) {
- case '"':
- h5dump_str_append(str, "\\\"");
- break;
- case '\\':
- h5dump_str_append(str, "\\\\");
- break;
- case '\b':
- h5dump_str_append(str, "\\b");
- break;
- case '\f':
- h5dump_str_append(str, "\\f");
- break;
- case '\n':
- h5dump_str_append(str, "\\n");
- break;
- case '\r':
- h5dump_str_append(str, "\\r");
- break;
- case '\t':
- h5dump_str_append(str, "\\t");
- break;
- default:
- if (isprint(*((char*)vp))) {
- h5dump_str_append(str, "%c", *((char*)vp));
- } else {
- h5dump_str_append(str, "\\%03o", *((unsigned char*)vp));
- }
- break;
- }
-
- } else if (H5T_STRING==H5Tget_class(type)) {
- size = H5Tget_size(type);
- quote = '\0';
-
- for (i=0; i<size; i++) {
-
- /* Count how many times the next character repeats */
- j=1;
- while (i+j<size && ((char*)vp)[i]==((char*)vp)[i+j]) j++;
-
- /*
- * Print the opening quote. If the repeat count is high enough
- * to warrant printing the number of repeats instead of
- * enumerating the characters, then make sure the character to be
- * repeated is in it's own quote.
- */
- if (j>repeat_threshold) {
- if (quote) h5dump_str_append(str, "%c", quote);
- quote = '\'';
- h5dump_str_append(str, "%s%c", i?" ":"", quote);
- } else if (!quote) {
- quote = '"';
- h5dump_str_append(str, "%s%c", i?" ":"", quote);
- }
-
- /* Print the character */
- switch (((char*)vp)[i]) {
- case '"':
- h5dump_str_append(str, "\\\"");
- break;
- case '\\':
- h5dump_str_append(str, "\\\\");
- break;
- case '\b':
- h5dump_str_append(str, "\\b");
- break;
- case '\f':
- h5dump_str_append(str, "\\f");
- break;
- case '\n':
- h5dump_str_append(str, "\\n");
- break;
- case '\r':
- h5dump_str_append(str, "\\r");
- break;
- case '\t':
- h5dump_str_append(str, "\\t");
- break;
- default:
- if (isprint(((char*)vp)[i])) {
- h5dump_str_append(str, "%c", ((char*)vp)[i]);
- } else {
- h5dump_str_append(str, "\\%03o", ((unsigned char*)vp)[i]);
- }
- break;
- }
-
- /* Print the repeat count */
- if (j>repeat_threshold) {
+ if (info) {
+ /* Append value depending on data type */
+ start = h5dump_str_len(str);
+ if (H5Tequal(type, H5T_NATIVE_DOUBLE)) {
+ h5dump_str_append(str, OPT(info->fmt_double, "%g"), *((double*)vp));
+
+ } else if (H5Tequal(type, H5T_NATIVE_FLOAT)) {
+ h5dump_str_append(str, OPT(info->fmt_double, "%g"), *((float*)vp));
+
+ } else if (info->ascii &&
+ (H5Tequal(type, H5T_NATIVE_SCHAR) ||
+ H5Tequal(type, H5T_NATIVE_UCHAR))) {
+ switch (*((char*)vp)) {
+ case '"':
+ h5dump_str_append(str, "\\\"");
+ break;
+ case '\\':
+ h5dump_str_append(str, "\\\\");
+ break;
+ case '\b':
+ h5dump_str_append(str, "\\b");
+ break;
+ case '\f':
+ h5dump_str_append(str, "\\f");
+ break;
+ case '\n':
+ h5dump_str_append(str, "\\n");
+ break;
+ case '\r':
+ h5dump_str_append(str, "\\r");
+ break;
+ case '\t':
+ h5dump_str_append(str, "\\t");
+ break;
+ default:
+ if (isprint(*((char*)vp))) {
+ h5dump_str_append(str, "%c", *((char*)vp));
+ } else {
+ h5dump_str_append(str, "\\%03o", *((unsigned char*)vp));
+ }
+ break;
+ }
+
+ } else if (H5T_STRING==H5Tget_class(type)) {
+ size = H5Tget_size(type);
+ quote = '\0';
+
+ for (i=0; i<size; i++) {
+
+ /* Count how many times the next character repeats */
+ j=1;
+ while (i+j<size && ((char*)vp)[i]==((char*)vp)[i+j]) j++;
+
+ /*
+ * Print the opening quote. If the repeat count is high enough
+ * to warrant printing the number of repeats instead of
+ * enumerating the characters, then make sure the character to be
+ * repeated is in it's own quote.
+ */
+ if (j>repeat_threshold) {
+ if (quote) h5dump_str_append(str, "%c", quote);
+ quote = '\'';
+ h5dump_str_append(str, "%s%c", i?" ":"", quote);
+ } else if (!quote) {
+ quote = '"';
+ h5dump_str_append(str, "%s%c", i?" ":"", quote);
+ }
+
+ /* Print the character */
+ switch (((char*)vp)[i]) {
+ case '"':
+ h5dump_str_append(str, "\\\"");
+ break;
+ case '\\':
+ h5dump_str_append(str, "\\\\");
+ break;
+ case '\b':
+ h5dump_str_append(str, "\\b");
+ break;
+ case '\f':
+ h5dump_str_append(str, "\\f");
+ break;
+ case '\n':
+ h5dump_str_append(str, "\\n");
+ break;
+ case '\r':
+ h5dump_str_append(str, "\\r");
+ break;
+ case '\t':
+ h5dump_str_append(str, "\\t");
+ break;
+ default:
+ if (isprint(((char*)vp)[i])) {
+ h5dump_str_append(str, "%c", ((char*)vp)[i]);
+ } else {
+ h5dump_str_append(str, "\\%03o", ((unsigned char*)vp)[i]);
+ }
+ break;
+ }
+
+ /* Print the repeat count */
+ if (j>repeat_threshold) {
#ifdef REPEAT_VERBOSE
- h5dump_str_append(str, "%c repeats %d times", quote, j-1);
+ h5dump_str_append(str, "%c repeats %d times", quote, j-1);
#else
- h5dump_str_append(str, "%c*%d", quote, j-1);
+ h5dump_str_append(str, "%c*%d", quote, j-1);
#endif
- quote = '\0';
- i += j-1;
- }
- }
- if (quote) h5dump_str_append(str, "%c", quote);
-
- } else if (H5Tequal(type, H5T_NATIVE_INT)) {
- h5dump_str_append(str, OPT(info->fmt_int, "%d"),
- *((int*)vp));
-
- } else if (H5Tequal(type, H5T_NATIVE_UINT)) {
- h5dump_str_append(str, OPT(info->fmt_uint, "%u"),
- *((unsigned*)vp));
-
- } else if (H5Tequal(type, H5T_NATIVE_SCHAR)) {
- h5dump_str_append(str, OPT(info->fmt_schar, "%d"),
- *((signed char*)vp));
-
- } else if (H5Tequal(type, H5T_NATIVE_UCHAR)) {
- h5dump_str_append(str, OPT(info->fmt_uchar, "%u"),
- *((unsigned char*)vp));
-
- } else if (H5Tequal(type, H5T_NATIVE_SHORT)) {
- h5dump_str_append(str, OPT(info->fmt_short, "%d"),
- *((short*)vp));
-
- } else if (H5Tequal(type, H5T_NATIVE_USHORT)) {
- h5dump_str_append(str, OPT(info->fmt_ushort, "%u"),
- *((unsigned short*)vp));
-
- } else if (H5Tequal(type, H5T_NATIVE_LONG)) {
- h5dump_str_append(str, OPT(info->fmt_long, "%ld"),
- *((long*)vp));
-
- } else if (H5Tequal(type, H5T_NATIVE_ULONG)) {
- h5dump_str_append(str, OPT(info->fmt_ulong, "%lu"),
- *((unsigned long*)vp));
-
- } else if (H5Tequal(type, H5T_NATIVE_LLONG)) {
- h5dump_str_append(str, OPT(info->fmt_llong, fmt_llong),
- *((long_long*)vp));
-
- } else if (H5Tequal(type, H5T_NATIVE_ULLONG)) {
- h5dump_str_append(str, OPT(info->fmt_ullong, fmt_ullong),
- *((unsigned long_long*)vp));
-
- } else if (H5Tequal(type, H5T_NATIVE_HSSIZE)) {
- if (sizeof(hssize_t)==sizeof(int)) {
- h5dump_str_append(str, OPT(info->fmt_int, "%d"),
- *((int*)vp));
- } else if (sizeof(hssize_t)==sizeof(long)) {
- h5dump_str_append(str, OPT(info->fmt_long, "%ld"),
- *((long*)vp));
- } else {
- h5dump_str_append(str, OPT(info->fmt_llong, fmt_llong),
- *((int64_t*)vp));
- }
-
- } else if (H5Tequal(type, H5T_NATIVE_HSIZE)) {
- if (sizeof(hsize_t)==sizeof(int)) {
- h5dump_str_append(str, OPT(info->fmt_uint, "%u"),
- *((unsigned*)vp));
- } else if (sizeof(hsize_t)==sizeof(long)) {
- h5dump_str_append(str, OPT(info->fmt_ulong, "%lu"),
- *((unsigned long*)vp));
- } else {
- h5dump_str_append(str, OPT(info->fmt_ullong, fmt_ullong),
- *((uint64_t*)vp));
- }
-
- } else if (H5T_COMPOUND==H5Tget_class(type)) {
- nmembs = H5Tget_nmembers(type);
- h5dump_str_append(str, "%s", OPT(info->cmpd_pre, "{"));
- for (j=0; j<nmembs; j++) {
- if (j) h5dump_str_append(str, "%s",
- OPT(info->cmpd_sep,
- ", " OPTIONAL_LINE_BREAK));
-
- /* The name */
- name = H5Tget_member_name(type, j);
- h5dump_str_append(str, OPT(info->cmpd_name, ""), name);
- free(name);
-
- /* The value */
- offset = H5Tget_member_offset(type, j);
- memb = H5Tget_member_type(type, j);
- size = H5Tget_size(memb);
- ndims = H5Tget_member_dims(type, j, dims, NULL);
- assert(ndims>=0 && ndims<=H5S_MAX_RANK);
- for (k=0, nelmts=1; k<ndims; k++) nelmts *= dims[k];
-
- if (nelmts>1) {
- h5dump_str_append(str, "%s", OPT(info->arr_pre, "["));
- }
- for (i=0; i<nelmts; i++) {
- if (i) {
- h5dump_str_append(str, "%s",
- OPT(info->arr_sep,
- "," OPTIONAL_LINE_BREAK));
+ quote = '\0';
+ i += j-1;
+ }
+ }
+ if (quote) h5dump_str_append(str, "%c", quote);
+
+ } else if (H5Tequal(type, H5T_NATIVE_INT)) {
+ h5dump_str_append(str, OPT(info->fmt_int, "%d"),
+ *((int*)vp));
+
+ } else if (H5Tequal(type, H5T_NATIVE_UINT)) {
+ h5dump_str_append(str, OPT(info->fmt_uint, "%u"),
+ *((unsigned*)vp));
+
+ } else if (H5Tequal(type, H5T_NATIVE_SCHAR)) {
+ h5dump_str_append(str, OPT(info->fmt_schar, "%d"),
+ *((signed char*)vp));
+
+ } else if (H5Tequal(type, H5T_NATIVE_UCHAR)) {
+ h5dump_str_append(str, OPT(info->fmt_uchar, "%u"),
+ *((unsigned char*)vp));
+
+ } else if (H5Tequal(type, H5T_NATIVE_SHORT)) {
+ h5dump_str_append(str, OPT(info->fmt_short, "%d"),
+ *((short*)vp));
+
+ } else if (H5Tequal(type, H5T_NATIVE_USHORT)) {
+ h5dump_str_append(str, OPT(info->fmt_ushort, "%u"),
+ *((unsigned short*)vp));
+
+ } else if (H5Tequal(type, H5T_NATIVE_LONG)) {
+ h5dump_str_append(str, OPT(info->fmt_long, "%ld"),
+ *((long*)vp));
+
+ } else if (H5Tequal(type, H5T_NATIVE_ULONG)) {
+ h5dump_str_append(str, OPT(info->fmt_ulong, "%lu"),
+ *((unsigned long*)vp));
+
+ } else if (H5Tequal(type, H5T_NATIVE_LLONG)) {
+ h5dump_str_append(str, OPT(info->fmt_llong, fmt_llong),
+ *((long_long*)vp));
+
+ } else if (H5Tequal(type, H5T_NATIVE_ULLONG)) {
+ h5dump_str_append(str, OPT(info->fmt_ullong, fmt_ullong),
+ *((unsigned long_long*)vp));
+
+ } else if (H5Tequal(type, H5T_NATIVE_HSSIZE)) {
+ if (sizeof(hssize_t)==sizeof(int)) {
+ h5dump_str_append(str, OPT(info->fmt_int, "%d"),
+ *((int*)vp));
+ } else if (sizeof(hssize_t)==sizeof(long)) {
+ h5dump_str_append(str, OPT(info->fmt_long, "%ld"),
+ *((long*)vp));
+ } else {
+ h5dump_str_append(str, OPT(info->fmt_llong, fmt_llong),
+ *((int64_t*)vp));
+ }
+
+ } else if (H5Tequal(type, H5T_NATIVE_HSIZE)) {
+ if (sizeof(hsize_t)==sizeof(int)) {
+ h5dump_str_append(str, OPT(info->fmt_uint, "%u"),
+ *((unsigned*)vp));
+ } else if (sizeof(hsize_t)==sizeof(long)) {
+ h5dump_str_append(str, OPT(info->fmt_ulong, "%lu"),
+ *((unsigned long*)vp));
+ } else {
+ h5dump_str_append(str, OPT(info->fmt_ullong, fmt_ullong),
+ *((uint64_t*)vp));
+ }
+
+ } else if (H5T_COMPOUND==H5Tget_class(type)) {
+ nmembs = H5Tget_nmembers(type);
+ h5dump_str_append(str, "%s", OPT(info->cmpd_pre, "{"));
+ for (j=0; j<nmembs; j++) {
+ if (j) h5dump_str_append(str, "%s",
+ OPT(info->cmpd_sep,
+ ", " OPTIONAL_LINE_BREAK));
+
+ /* The name */
+ name = H5Tget_member_name(type, j);
+ h5dump_str_append(str, OPT(info->cmpd_name, ""), name);
+ free(name);
+
+ /* The value */
+ offset = H5Tget_member_offset(type, j);
+ memb = H5Tget_member_type(type, j);
+ size = H5Tget_size(memb);
+ ndims = H5Tget_member_dims(type, j, dims, NULL);
+ assert(ndims>=0 && ndims<=H5S_MAX_RANK);
+ for (k=0, nelmts=1; k<ndims; k++) nelmts *= dims[k];
+
+ if (nelmts>1) {
+ h5dump_str_append(str, "%s", OPT(info->arr_pre, "["));
+ }
+ for (i=0; i<nelmts; i++) {
+ if (i) {
+ h5dump_str_append(str, "%s",
+ OPT(info->arr_sep,
+ "," OPTIONAL_LINE_BREAK));
+ }
+ h5dump_sprint(str, info, memb, (char*)vp+offset+i*size);
+ }
+ if (nelmts>1) {
+ h5dump_str_append(str, "%s", OPT(info->arr_suf, "]"));
+ }
+ H5Tclose(memb);
+ }
+ h5dump_str_append(str, "%s", OPT(info->cmpd_suf, "}"));
+
+ } else if (H5T_ENUM==H5Tget_class(type)) {
+ char enum_name[1024];
+ if (H5Tenum_nameof(type, vp, enum_name, sizeof enum_name)>=0) {
+ h5dump_escape(enum_name, sizeof enum_name, TRUE);
+ } else {
+ h5dump_str_append(str, "0x");
+ n = H5Tget_size(type);
+ for (i=0; i<n; i++) {
+ h5dump_str_append(str, "%02x", ((unsigned char*)vp)[i]);
+ }
+ }
+
+ } else {
+ h5dump_str_append(str, "0x");
+ n = H5Tget_size(type);
+ for (i=0; i<n; i++) {
+ h5dump_str_append(str, "%02x", ((unsigned char*)vp)[i]);
+ }
}
- h5dump_sprint(str, info, memb, (char*)vp+offset+i*size);
- }
- if (nelmts>1) {
- h5dump_str_append(str, "%s", OPT(info->arr_suf, "]"));
- }
- H5Tclose(memb);
- }
- h5dump_str_append(str, "%s", OPT(info->cmpd_suf, "}"));
-
- } else if (H5T_ENUM==H5Tget_class(type)) {
- char enum_name[1024];
- if (H5Tenum_nameof(type, vp, enum_name, sizeof enum_name)>=0) {
- h5dump_escape(enum_name, sizeof enum_name, TRUE);
- } else {
- h5dump_str_append(str, "0x");
- n = H5Tget_size(type);
- for (i=0; i<n; i++) {
- h5dump_str_append(str, "%02x", ((unsigned char*)vp)[i]);
- }
+
+ return h5dump_str_fmt(str, start, OPT(info->elmt_fmt, "%s"));
+
}
-
- } else {
- h5dump_str_append(str, "0x");
- n = H5Tget_size(type);
- for (i=0; i<n; i++) {
- h5dump_str_append(str, "%02x", ((unsigned char*)vp)[i]);
+ else {
+/*
+ this is just my first step in copmbining these 2 functions
+ this is ripped straight out of h5dumputil.c
+*/
+ char temp[1024];
+ H5T_str_t str_pad;
+ char *s = str->s;
+ if (H5Tequal(type, H5T_NATIVE_DOUBLE)) {
+ sprintf(s, "%g", *((double*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_FLOAT)) {
+ sprintf(s, "%g", *((float*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_SHORT)) {
+ sprintf(s, "%d", *((short*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_USHORT)) {
+ sprintf(s, "%u", *((unsigned short*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_INT)) {
+ sprintf(s, "%d", *((int*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_UINT)) {
+ sprintf(s, "%u", *((unsigned*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_LONG)) {
+ sprintf(s, "%ld", *((long*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_ULONG)) {
+ sprintf(s, "%lu", *((unsigned long*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_SCHAR)) {
+ sprintf(s, "%d", *((signed char*)vp));
+ } else if (H5Tequal(type, H5T_NATIVE_UCHAR)) {
+ sprintf(s, "%u", *((unsigned char*)vp));
+ } else if (H5T_STRING==H5Tget_class(type)) {
+ str_pad = H5Tget_strpad(type) ;
+ j = 0;
+ for (i = 0; i < H5Tget_size(type); i++) {
+ switch (*((char*)vp+i)) {
+ case '"':
+ strcpy(s+j, "\\\"");
+ j += strlen("\\\"");
+ break;
+ case '\\':
+ strcpy(s+j, "\\\\");
+ j += strlen("\\\\");
+ break;
+ case '\b':
+ strcpy(s+j, "\\b");
+ j += strlen("\\b");
+ break;
+ case '\f':
+ strcpy(s+j, "\\f");
+ j += strlen("\\f");
+ break;
+ case '\n':
+ strcpy(s+j, "\\n");
+ j += strlen("\\n");
+ break;
+ case '\r':
+ strcpy(s+j, "\\r");
+ j += strlen("\\r");
+ break;
+ case '\t':
+ strcpy(s+j, "\\t");
+ j += strlen("\\t");
+ break;
+ default:
+ if (isprint(*((char*)vp+i))){
+ sprintf(s+j, "%c", *((char*)vp+i));
+ j += strlen(s+j);
+ } else {
+ if (str_pad == H5T_STR_NULLTERM &&
+ *((unsigned char*)vp+i) == '\0' ) {
+ sprintf(s+j, "%c", *((unsigned char*)vp+i));
+ i = H5Tget_size(type);
+ } else {
+ sprintf(s+j, "\\%03o", *((unsigned char*)vp+i));
+ j += strlen(s+j);
+ }
+ }
+ break;
+ }
+ }
+ } else {
+ strcpy(temp, "0x");
+ n = H5Tget_size(type);
+ for (i=0; i<n; i++) {
+ sprintf(temp+strlen(temp), "%02x", ((unsigned char*)vp)[i]);
+ }
+ sprintf(s, "%s", temp);
+
+
+ }
}
- }
-
- return h5dump_str_fmt(str, start, OPT(info->elmt_fmt, "%s"));
}
@@ -1122,14 +1222,20 @@ h5dump_simple_mem(FILE *stream, const h5dump_t *info, hid_t type,
*
*-------------------------------------------------------------------------
*/
+/*
+ strDUAction is TRUE when we want the dumputil way of
+ handling the string and is FALSE when we want the tools.c
+ way.
+*/
hid_t
-h5dump_fixtype(hid_t f_type)
+h5dump_fixtype(hid_t f_type, hbool_t strDUAction)
{
hid_t m_type=-1, f_memb;
hid_t *memb=NULL;
char **name=NULL;
int nmembs=0, i, j, *ndims=NULL;
size_t size, offset, *dims=NULL, nelmts;
+ H5T_str_t strpad;
size = H5Tget_size(f_type);
switch (H5Tget_class(f_type)) {
@@ -1169,10 +1275,35 @@ h5dump_fixtype(hid_t f_type)
m_type = H5Tcopy(H5T_NATIVE_LDOUBLE);
}
break;
-
+
+ case H5T_TIME:
case H5T_STRING:
- m_type = H5Tcopy(f_type);
- H5Tset_cset(m_type, H5T_CSET_ASCII);
+/*
+ this is needed because the function in dumputil.c is the
+ case where strDUAction == TRUE. if it is false we will do the
+ original action here.
+
+*/
+ if (strDUAction == TRUE) {
+ m_type = H5Tcopy(H5T_C_S1);
+ H5Tset_size(m_type, size);
+ strpad = H5Tget_strpad(f_type) ;
+ H5Tset_strpad(m_type, strpad);
+
+ if (H5Tequal(m_type,f_type) < 0) {
+ H5Tclose(m_type);
+ m_type = H5Tcopy(H5T_FORTRAN_S1);
+ H5Tset_size(m_type, size);
+ H5Tset_strpad(m_type, strpad);
+ if (H5Tequal(m_type,f_type) < 0)
+ m_type = -1;
+ }
+
+ }
+ else {
+ m_type = H5Tcopy(f_type);
+ H5Tset_cset(m_type, H5T_CSET_ASCII);
+ }
break;
case H5T_COMPOUND:
@@ -1193,7 +1324,7 @@ h5dump_fixtype(hid_t f_type)
/* Get the member type and fix it */
f_memb = H5Tget_member_type(f_type, i);
- memb[i] = h5dump_fixtype(f_memb);
+ memb[i] = h5dump_fixtype(f_memb,strDUAction);
H5Tclose(f_memb);
if (memb[i]<0) goto done;
@@ -1228,7 +1359,6 @@ h5dump_fixtype(hid_t f_type)
m_type = H5Tcopy(f_type);
break;
- case H5T_TIME:
case H5T_BITFIELD:
case H5T_OPAQUE:
/*
@@ -1294,7 +1424,7 @@ h5dump_dset(FILE *stream, const h5dump_t *info, hid_t dset, hid_t _p_type)
}
if (p_type<0) {
f_type = H5Dget_type(dset);
- p_type = h5dump_fixtype(f_type);
+ p_type = h5dump_fixtype(f_type,FALSE);
H5Tclose(f_type);
if (p_type<0) return -1;
}
@@ -1346,3 +1476,613 @@ h5dump_mem(FILE *stream, const h5dump_t *info, hid_t type, hid_t space,
if (H5Sis_simple(space)<=0) return -1;
return h5dump_simple_mem(stream, info, type, space, mem);
}
+
+
+/*************************************************************************/
+/*from h5dumputil.c*/
+
+
+/*-------------------------------------------------------------------------
+ * Function: display_numeric_data
+ *
+ * Purpose: Display numeric data in ddl format.
+ *
+ * Return: void
+ *
+ * Comment: hs_nelmts number of elements to be printed
+ * p_type memory data type
+ * sm_buf data buffer
+ * p_type_nbytes size of p_type
+ * p_nelmts total number of elements
+ * dim_n_size size of dimemsion n
+ * elmtno element index
+ *
+ *-------------------------------------------------------------------------
+ */
+static void display_numeric_data
+(hsize_t hs_nelmts, hid_t p_type, unsigned char *sm_buf, size_t p_type_nbytes,
+ hsize_t p_nelmts, hsize_t dim_n_size, hsize_t elmtno) {
+
+hsize_t i;
+char p_buf[256];
+char out_buf[NCOLS];
+
+
+ out_buf[0] = '\0';
+ if ((indent+COL) > NCOLS) indent = 0;
+
+ for (i=0; i<hs_nelmts && (elmtno+i) < p_nelmts; i++) {
+ h5dump_sprint(p_buf, NULL,p_type, sm_buf+i*p_type_nbytes);
+
+ if ((int)(strlen(out_buf)+strlen(p_buf)+1) > (NCOLS-indent-COL)) {
+ /* first row of member */
+ if (compound_data && (elmtno+i+1) == dim_n_size)
+ printf("%s\n", out_buf);
+ else {
+ indentation(indent+COL);
+ printf("%s\n", out_buf);
+ }
+ strcpy(out_buf, p_buf);
+ if ((elmtno+i+1) % dim_n_size)
+ strcat(out_buf, ", ");
+ else { /* end of a row, flush out_buf */
+ indentation(indent+COL);
+ printf("%s", out_buf);
+ if ((elmtno+i+1) != p_nelmts) /* not last element */
+ printf(",\n");
+ else if (compound_data) { /* last element of member data*/
+ if ((NCOLS-strlen(out_buf)-indent-COL) < 2) {
+ /* 2 for space and ] */
+ printf("\n");
+ indentation(indent+COL-3);
+ }
+ } else
+ printf("\n"); /* last row */
+ *out_buf = '\0';
+ }
+ } else {
+ strcat(out_buf, p_buf);
+ if ((elmtno+i+1) % dim_n_size) {
+ if ((NCOLS-strlen(out_buf)-indent-COL-1) > 0)
+ strcat(out_buf, ", ");
+ else
+ strcat(out_buf, ",");
+ } else { /* end of a row */
+ /* 1st row of member data */
+ if (compound_data && (elmtno+i+1) == dim_n_size)
+ printf("%s", out_buf);
+ else {
+ indentation(indent+COL);
+ printf("%s", out_buf);
+ }
+
+ /* if it's the last element */
+ if ((elmtno+i+1) != p_nelmts)
+ printf(",\n");
+ else if (compound_data) { /* last row of member data*/
+ /* 2 for space and ] */
+ if ((NCOLS-strlen(out_buf)-indent-COL) < 2) {
+ printf("\n");
+ indentation(indent+COL-3);
+ }
+ } else
+ printf("\n"); /* last row */
+ *out_buf = '\0';
+ }
+ }
+ }
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: display_string
+ *
+ * Purpose: Display string in ddl format
+ *
+ * Return: void
+ *
+ * Comment: concatenator operator : '//'
+ * separator between elements: ','
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void display_string
+(hsize_t hs_nelmts, hid_t p_type, unsigned char *sm_buf, size_t p_type_nbytes,
+ hsize_t p_nelmts, hsize_t dim_n_size, hsize_t elmtno) {
+hsize_t i, row_size=0;
+int j, m, x, y, z, first_row=1;
+int free_space, long_string = 0;
+char p_buf[256], out_buf[NCOLS];
+
+ out_buf[0] = '\0';
+ if ((indent+COL) > NCOLS) indent = 0;
+
+ for (i=0; i<hs_nelmts && (elmtno+i) < p_nelmts; i++) {
+ row_size++;
+ h5dump_sprint(p_buf, NULL,p_type, sm_buf+i*p_type_nbytes);
+
+ free_space = NCOLS - indent - COL - strlen(out_buf);
+
+ if ((elmtno+i+1) == p_nelmts) { /* last element */
+ /* 2 for double quotes */
+ if (((int)strlen(p_buf) + 2) > free_space) long_string = 1;
+ } else
+ /* 3 for double quotes and one comma */
+ if (((int)strlen(p_buf) + 3) > free_space) long_string = 1;
+
+ if (long_string) {
+
+ if (free_space < 5) { /* 5 for double quotes, one space and two '/'s */
+ /* flush out_buf */
+ if (compound_data && first_row) {
+ printf("%s\n", out_buf);
+ first_row = 0;
+ } else {
+ indentation(indent+COL);
+ printf("%s\n", out_buf);
+ }
+ out_buf[0] = '\0';
+ x = 0 ;
+ } else {
+ x = free_space - 5;
+ if (compound_data && first_row) {
+ printf("%s\"", out_buf);
+ strncpy(out_buf, p_buf, x);
+ out_buf[x] = '\0';
+ printf("%s\" //\n", out_buf);
+ first_row = 0;
+ } else {
+ indentation(indent+COL);
+ printf("%s\"", out_buf);
+ strncpy(out_buf, p_buf, x);
+ out_buf[x] = '\0';
+ printf("%s\" //\n", out_buf);
+ }
+ out_buf[0] = '\0';
+ }
+
+ y = NCOLS - indent -COL - 5;
+
+ m = (strlen(p_buf) - x)/y;
+
+ z = (strlen(p_buf) - x) % y;
+
+
+ for (j = 0; j < m - 1 ; j++) {
+ indentation(indent+COL);
+ strncpy(out_buf, p_buf+x+j*y, y);
+ out_buf[y] = '\0';
+ printf("\"%s\" //\n", out_buf);
+ }
+
+ if ((elmtno+i+1) == p_nelmts) { /* last element */
+ if ((int)strlen(p_buf+x+j*y) > (NCOLS - indent - COL -2)) { /* 2 for double quotes */
+ indentation(indent+COL);
+ strncpy(out_buf, p_buf+x+j*y, y);
+ out_buf[y] = '\0';
+ printf("\"%s\" //\n", out_buf);
+ indentation(indent+COL);
+ printf("\"%s\"", p_buf+x+m*y);
+ if (compound_data) {
+ if ((NCOLS-strlen(out_buf)-indent-COL) < 2) {
+ printf("\n");
+ indentation(indent+COL-3);
+ }
+ } else
+ printf("\n");
+
+ } else {
+ indentation(indent+COL);
+ printf("\"%s\"", p_buf+x+j*y);
+ if (compound_data) {
+ if ((NCOLS-strlen(out_buf)-indent-COL) < 2) {
+ printf("\n");
+ indentation(indent+COL-3);
+ }
+
+ } else
+ printf("\n");
+ }
+ out_buf[0] = '\0';
+ } else if ( row_size == dim_n_size) {
+ if ((int)strlen(p_buf+x+j*y) > (NCOLS - indent - COL -3)) { /* 3 for 2 "'s and 1 , */
+ indentation(indent+COL);
+ strncpy(out_buf, p_buf+x+j*y, y);
+ out_buf[y] = '\0';
+ printf("\"%s\" //\n", out_buf);
+ indentation(indent+COL);
+ printf("\"%s\",\n", p_buf+x+m*y);
+ } else {
+ indentation(indent+COL);
+ printf("\"%s\",\n", p_buf+x+j*y);
+ }
+ out_buf[0] = '\0';
+ row_size = 0;
+
+ } else {
+ if ((int)strlen(p_buf+x+j*y) > (NCOLS - indent - COL -3)) { /* 3 for 2 "'s and 1 , */
+ indentation(indent+COL);
+ strncpy(out_buf, p_buf+x+j*y, y);
+ out_buf[y] = '\0';
+ printf("\"%s\" //\n", out_buf);
+ strcpy(out_buf, "\"");
+ strcat(out_buf, p_buf+x+m*y);
+ strcat(out_buf, "\",");
+ if ((int)strlen(out_buf) < (NCOLS-indent-COL)) strcat(out_buf, " ");
+ } else {
+ strcpy(out_buf, "\"");
+ strcat (out_buf, p_buf+x+j*y);
+ strcat(out_buf, "\",");
+ if ((int)strlen(out_buf) < (NCOLS-indent-COL)) strcat(out_buf, " ");
+ }
+ }
+ long_string = 0;
+
+ } else {
+
+ /* flush out_buf if it's end of a row */
+ if (row_size == dim_n_size) {
+ if (compound_data && (elmtno+i+1) == dim_n_size) { /* 1st row */
+ printf("%s\"%s\"", out_buf, p_buf);
+ first_row = 0;
+ } else {
+ indentation(indent+COL);
+ printf("%s\"%s\"", out_buf, p_buf);
+ }
+
+ if ((elmtno+i+1) != p_nelmts)
+ printf(",\n");
+ else if (compound_data) {
+ if ((NCOLS-strlen(out_buf)-strlen(p_buf)-indent-COL) < 2) {
+ /* 2 for space and ] */
+ printf("\n");
+ indentation(indent+COL-3);
+ }
+ } else
+ printf("\n");
+
+ out_buf[0] = '\0';
+ row_size = 0;
+ } else {
+ strcat(out_buf, "\"");
+ strcat(out_buf, p_buf);
+ strcat(out_buf, "\",");
+ if ((int)strlen(out_buf) < (NCOLS-indent-COL)) strcat(out_buf, " ");
+ }
+
+ }
+ }
+}
+
+
+/*-------------------------------------------------------------------------
+ * Function: display_compound_data
+ *
+ * Purpose: Display compound data in ddl format
+ *
+ * Return: void
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void display_compound_data
+(hsize_t hs_nelmts, hid_t p_type, unsigned char *sm_buf, size_t p_type_nbytes,
+ hsize_t p_nelmts, hsize_t elmtno) {
+size_t offset, size, dims[4];
+hsize_t nelmts, dim_n_size=0;
+hid_t memb;
+int nmembs, i, j, k, ndims, perm[4];
+
+ if ((indent+COL) > NCOLS) indent = 0;
+
+ for (i=0; i<(int)hs_nelmts && (elmtno+i) < p_nelmts; i++) {
+
+ nmembs = H5Tget_nmembers(p_type);
+
+ indentation(indent+COL);
+ printf("{\n");
+
+ indent+= COL;
+ for (j=0; j<nmembs; j++) {
+
+ offset = H5Tget_member_offset(p_type, j);
+ memb = H5Tget_member_type(p_type, j);
+ size = H5Tget_size(memb);
+ ndims = H5Tget_member_dims(p_type, j, dims, perm);
+ if (ndims > 0) dim_n_size = dims[ndims-1];
+ else dim_n_size = 1;
+ for (k=0, nelmts=1; k<ndims; k++) nelmts *= dims[k];
+
+ indentation(indent+COL);
+ printf("[ ");
+
+ indent+=2;
+ switch (H5Tget_class(memb)) {
+ case H5T_INTEGER:
+ display_numeric_data
+ (nelmts, memb, sm_buf+offset+i*p_type_nbytes, size, nelmts, dim_n_size, 0) ;
+ break;
+
+ case H5T_FLOAT:
+ display_numeric_data
+ (nelmts, memb, sm_buf+offset+i*p_type_nbytes, size, nelmts, dim_n_size, 0) ;
+ break;
+
+ case H5T_TIME:
+ break;
+
+ case H5T_STRING:
+ display_string
+ (nelmts, memb, sm_buf+offset+i*p_type_nbytes, size, nelmts, dim_n_size, 0 ) ;
+ break;
+
+ case H5T_BITFIELD:
+ break;
+
+ case H5T_OPAQUE:
+ break;
+
+ default: break;
+
+ }
+ indent-=2;
+
+ if ( j == nmembs-1) printf(" ]\n");
+ else printf(" ],\n");
+
+ H5Tclose(memb);
+ }
+ indent-= COL;
+
+ indentation(indent+COL);
+ if ((elmtno+i+1) == p_nelmts) printf("}\n");
+ else printf("},\n");
+ }
+
+}
+/*-------------------------------------------------------------------------
+ * Function: h5dump_simple
+ *
+ * Purpose: Print some values from a dataset or an attribute with a
+ * simple data space.
+ *
+ * Return: Success: 0
+ *
+ * Failure: -1
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static int
+h5dump_simple(hid_t oid, hid_t p_type, int obj_data)
+{
+ hid_t f_space; /*file data space */
+ int ndims; /*dimensionality */
+ hsize_t elmtno, i; /*counters */
+ int carry; /*counter carry value */
+ hssize_t zero[8]; /*vector of zeros */
+
+ /* Print info */
+ hsize_t p_min_idx[8]; /*min selected index */
+ hsize_t p_max_idx[8]; /*max selected index */
+ size_t p_type_nbytes; /*size of memory type */
+ hsize_t p_nelmts; /*total selected elmts */
+
+ /* Stripmine info */
+ hsize_t sm_size[8]; /*stripmine size */
+ hsize_t sm_nbytes; /*bytes per stripmine */
+ hsize_t sm_nelmts; /*elements per stripmine*/
+ unsigned char *sm_buf; /*buffer for raw data */
+ hid_t sm_space; /*stripmine data space */
+
+ /* Hyperslab info */
+ hssize_t hs_offset[8]; /*starting offset */
+ hsize_t hs_size[8]; /*size this pass */
+ hsize_t hs_nelmts; /*elements in request */
+ hsize_t dim_n_size;
+
+
+ if (obj_data == DATASET_DATA)
+ f_space = H5Dget_space(oid);
+ else
+ f_space = H5Aget_space(oid);
+
+ /*
+ * Check that everything looks okay. The dimensionality must not be too
+ * great and the dimensionality of the items selected for printing must
+ * match the dimensionality of the dataset.
+ */
+
+ ndims = H5Sget_simple_extent_ndims(f_space);
+
+ if ((size_t)ndims>NELMTS(sm_size)) return -1;
+
+ /* Assume entire data space to be printed */
+ for (i=0; i<(hsize_t)ndims; i++) p_min_idx[i] = 0;
+ H5Sget_simple_extent_dims(f_space, p_max_idx, NULL);
+ for (i=0, p_nelmts=1; i<(hsize_t)ndims; i++) {
+ p_nelmts *= p_max_idx[i]-p_min_idx[i];
+ }
+ if (0==p_nelmts) return 0; /*nothing to print*/
+
+ /*
+ * Determine the strip mine size and allocate a buffer. The strip mine is
+ * a hyperslab whose size is manageable.
+ */
+ p_type_nbytes = H5Tget_size(p_type);
+ for (i=ndims, sm_nbytes=p_type_nbytes; i>0; --i) {
+ sm_size[i-1] = MIN (p_max_idx[i-1]-p_min_idx[i-1],
+ H5DUMP_BUFSIZE/sm_nbytes);
+ sm_nbytes *= sm_size[i-1];
+ assert(sm_nbytes>0);
+ }
+ sm_buf = malloc(sm_nbytes);
+ sm_nelmts = sm_nbytes/p_type_nbytes;
+ sm_space = H5Screate_simple(1, &sm_nelmts, NULL);
+
+ /* The stripmine loop */
+ memset(hs_offset, 0, sizeof hs_offset);
+ memset(zero, 0, sizeof zero);
+
+
+ for (elmtno=0; elmtno<p_nelmts; elmtno+=hs_nelmts) {
+
+
+ /* Calculate the hyperslab size */
+ if (ndims > 0) {
+ for (i=0, hs_nelmts=1; i<(hsize_t)ndims; i++) {
+ hs_size[i] = MIN(sm_size[i], p_max_idx[i]-hs_offset[i]);
+ hs_nelmts *= hs_size[i];
+ }
+ H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL,
+ hs_size, NULL);
+ H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL,
+ &hs_nelmts, NULL);
+ dim_n_size = p_max_idx[ndims-1];
+ } else {
+ H5Sselect_all(f_space);
+ H5Sselect_all(sm_space);
+ hs_nelmts = 1;
+ dim_n_size = 1;
+ }
+
+ if (obj_data == DATASET_DATA) {
+ if (H5Dread(oid, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) <0)
+ return -1;
+ } else {
+ if (H5Aread(oid, p_type, sm_buf) < 0)
+ return -1;
+ }
+
+ /* Print the data */
+ switch (H5Tget_class(p_type)) {
+ case H5T_INTEGER:
+ display_numeric_data (hs_nelmts, p_type, sm_buf, p_type_nbytes,
+ p_nelmts, dim_n_size, elmtno);
+ break;
+
+ case H5T_FLOAT:
+ display_numeric_data (hs_nelmts, p_type, sm_buf, p_type_nbytes,
+ p_nelmts, dim_n_size, elmtno);
+ break;
+
+ case H5T_TIME:
+ break;
+
+ case H5T_STRING:
+ display_string (hs_nelmts, p_type, sm_buf, p_type_nbytes,
+ p_nelmts, dim_n_size, elmtno);
+ break;
+
+ case H5T_BITFIELD:
+ break;
+
+ case H5T_OPAQUE:
+ break;
+
+ case H5T_COMPOUND:
+ compound_data = 1;
+ display_compound_data (hs_nelmts, p_type, sm_buf, p_type_nbytes, p_nelmts, elmtno);
+ compound_data = 0;
+ break;
+
+ default: break;
+ }
+
+ /* Calculate the next hyperslab offset */
+ for (i=ndims, carry=1; i>0 && carry; --i) {
+ hs_offset[i-1] += hs_size[i-1];
+ if (hs_offset[i-1]==(hssize_t)p_max_idx[i-1]) {
+ hs_offset[i-1] = p_min_idx[i-1];
+ } else {
+ carry = 0;
+ }
+ }
+ }
+
+ H5Sclose(sm_space);
+ H5Sclose(f_space);
+ return 0;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: print_data
+ *
+ * Purpose: Print some values from a dataset or an attribute to the
+ * file STREAM after converting all types to P_TYPE (which
+ * should be a native type). If P_TYPE is a negative value
+ * then it will be computed from the dataset/attribute type
+ * using only native types.
+ *
+ * Return: Success: 0
+ *
+ * Failure: -1
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+int
+print_data(hid_t oid, hid_t _p_type, int obj_data)
+{
+ hid_t f_space;
+ hid_t p_type = _p_type;
+ hid_t f_type;
+ int status = -1;
+
+
+ if (p_type < 0) {
+
+ if (obj_data == DATASET_DATA)
+ f_type = H5Dget_type(oid);
+ else
+ f_type = H5Aget_type(oid);
+
+ if (f_type < 0) return status;
+
+ p_type = h5dump_fixtype(f_type,TRUE);
+
+ H5Tclose(f_type);
+
+ if (p_type < 0) return status;
+ }
+
+ /* Check the data space */
+ if (obj_data == DATASET_DATA)
+ f_space = H5Dget_space(oid);
+ else
+ f_space = H5Aget_space(oid);
+
+ if (f_space < 0) return status;
+
+ if (H5Sis_simple(f_space) >= 0)
+ status = h5dump_simple(oid, p_type, obj_data);
+
+ H5Sclose(f_space);
+
+ if (p_type != _p_type) H5Tclose(p_type);
+
+ return status;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: indentation
+ *
+ * Purpose: Print spaces for indentation
+ *
+ * Return: void
+ *
+ * Programmer: Ruey-Hsia Li
+ *
+ * Modifications:
+ *
+ *-----------------------------------------------------------------------*/
+void indentation(int x) {
+
+ while (x>0) { printf(" "); x--; }
+
+}
generated by cgit v0.12 at 2024-10-30 20:21:25 (GMT)