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-rw-r--r--tools/lib/h5trav.c117
1 files changed, 66 insertions, 51 deletions
diff --git a/tools/lib/h5trav.c b/tools/lib/h5trav.c
index fb768a4..dc7e27d 100644
--- a/tools/lib/h5trav.c
+++ b/tools/lib/h5trav.c
@@ -21,7 +21,7 @@
*-------------------------------------------------------------------------
*/
typedef struct trav_addr_path_t {
- haddr_t addr;
+ H5O_token_t token;
char *path;
} trav_addr_path_t;
@@ -43,7 +43,7 @@ typedef struct {
hbool_t is_absolute; /* Whether the traversal has absolute paths */
const char *base_grp_name; /* Name of the group that serves as the base
* for iteration */
- unsigned fields; /* Fields needed in H5O_info_t struct */
+ unsigned fields; /* Fields needed in H5O_info2_t struct */
} trav_ud_traverse_t;
typedef struct {
@@ -65,10 +65,10 @@ typedef struct trav_path_op_data_t {
*/
static void trav_table_add(trav_table_t *table,
const char *objname,
- const H5O_info_t *oinfo);
+ const H5O_info2_t *oinfo);
static void trav_table_addlink(trav_table_t *table,
- haddr_t objno,
+ const H5O_token_t *obj_token,
const char *path);
/*-------------------------------------------------------------------------
@@ -116,15 +116,15 @@ h5trav_set_verbose(int print_verbose)
/*-------------------------------------------------------------------------
- * Function: trav_addr_add
+ * Function: trav_token_add
*
- * Purpose: Add a hardlink address to visited data structure
+ * Purpose: Add an object token to visited data structure
*
* Return: void
*-------------------------------------------------------------------------
*/
static void
-trav_addr_add(trav_addr_t *visited, haddr_t addr, const char *path)
+trav_token_add(trav_addr_t *visited, H5O_token_t *token, const char *path)
{
size_t idx; /* Index of address to use */
@@ -136,33 +136,37 @@ trav_addr_add(trav_addr_t *visited, haddr_t addr, const char *path)
/* Append it */
idx = visited->nused++;
- visited->objs[idx].addr = addr;
+ HDmemcpy(&visited->objs[idx].token, token, sizeof(H5O_token_t));
visited->objs[idx].path = HDstrdup(path);
-} /* end trav_addr_add() */
+} /* end trav_token_add() */
/*-------------------------------------------------------------------------
- * Function: trav_addr_visited
+ * Function: trav_token_visited
*
- * Purpose: Check if an address has already been visited
+ * Purpose: Check if an object token has already been seen
*
* Return: TRUE/FALSE
*-------------------------------------------------------------------------
*/
H5_ATTR_PURE static const char *
-trav_addr_visited(trav_addr_t *visited, haddr_t addr)
+trav_token_visited(hid_t loc_id, trav_addr_t *visited, H5O_token_t *token)
{
size_t u; /* Local index variable */
+ int token_cmp;
/* Look for address */
- for(u = 0; u < visited->nused; u++)
+ for(u = 0; u < visited->nused; u++) {
/* Check for address already in array */
- if(visited->objs[u].addr == addr)
+ if(H5Otoken_cmp(loc_id, &visited->objs[u].token, token, &token_cmp) < 0)
+ return NULL;
+ if(!token_cmp)
return(visited->objs[u].path);
+ }
- /* Didn't find address */
+ /* Didn't find object token */
return(NULL);
-} /* end trav_addr_visited() */
+} /* end trav_token_visited() */
/*-------------------------------------------------------------------------
@@ -172,7 +176,7 @@ trav_addr_visited(trav_addr_t *visited, haddr_t addr)
*-------------------------------------------------------------------------
*/
static herr_t
-traverse_cb(hid_t loc_id, const char *path, const H5L_info_t *linfo,
+traverse_cb(hid_t loc_id, const char *path, const H5L_info2_t *linfo,
void *_udata)
{
trav_ud_traverse_t *udata = (trav_ud_traverse_t *)_udata; /* User data */
@@ -199,10 +203,10 @@ traverse_cb(hid_t loc_id, const char *path, const H5L_info_t *linfo,
/* Perform the correct action for different types of links */
if(linfo->type == H5L_TYPE_HARD) {
- H5O_info_t oinfo;
+ H5O_info2_t oinfo;
/* Get information about the object */
- if(H5Oget_info_by_name2(loc_id, path, &oinfo, udata->fields, H5P_DEFAULT) < 0) {
+ if(H5Oget_info_by_name3(loc_id, path, &oinfo, udata->fields, H5P_DEFAULT) < 0) {
if(new_name)
HDfree(new_name);
return(H5_ITER_ERROR);
@@ -212,8 +216,8 @@ traverse_cb(hid_t loc_id, const char *path, const H5L_info_t *linfo,
* already visited, if it isn't there already
*/
if(oinfo.rc > 1)
- if(NULL == (already_visited = trav_addr_visited(udata->seen, oinfo.addr)))
- trav_addr_add(udata->seen, oinfo.addr, full_name);
+ if(NULL == (already_visited = trav_token_visited(loc_id, udata->seen, &oinfo.token)))
+ trav_token_add(udata->seen, &oinfo.token, full_name);
/* Make 'visit object' callback */
if(udata->visitor->visit_obj)
@@ -254,11 +258,11 @@ static int
traverse(hid_t file_id, const char *grp_name, hbool_t visit_start,
hbool_t recurse, const trav_visitor_t *visitor, unsigned fields)
{
- H5O_info_t oinfo; /* Object info for starting group */
+ H5O_info2_t oinfo; /* Object info for starting group */
int ret_value = 0;
/* Get info for starting object */
- if(H5Oget_info_by_name2(file_id, grp_name, &oinfo, fields, H5P_DEFAULT) < 0)
+ if(H5Oget_info_by_name3(file_id, grp_name, &oinfo, fields, H5P_DEFAULT) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Oget_info_by_name failed");
/* Visit the starting object */
@@ -276,7 +280,7 @@ traverse(hid_t file_id, const char *grp_name, hbool_t visit_start,
/* Check for multiple links to top group */
if(oinfo.rc > 1)
- trav_addr_add(&seen, oinfo.addr, grp_name);
+ trav_token_add(&seen, &oinfo.token, grp_name);
/* Set up user data structure */
udata.seen = &seen;
@@ -288,12 +292,12 @@ traverse(hid_t file_id, const char *grp_name, hbool_t visit_start,
/* Check for iteration of links vs. visiting all links recursively */
if(recurse) {
/* Visit all links in group, recursively */
- if(H5Lvisit_by_name(file_id, grp_name, trav_index_by, trav_index_order, traverse_cb, &udata, H5P_DEFAULT) < 0)
+ if(H5Lvisit_by_name2(file_id, grp_name, trav_index_by, trav_index_order, traverse_cb, &udata, H5P_DEFAULT) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Lvisit_by_name failed");
} /* end if */
else {
/* Iterate over links in group */
- if(H5Literate_by_name(file_id, grp_name, trav_index_by, trav_index_order, NULL, traverse_cb, &udata, H5P_DEFAULT) < 0)
+ if(H5Literate_by_name2(file_id, grp_name, trav_index_by, trav_index_order, NULL, traverse_cb, &udata, H5P_DEFAULT) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Literate_by_name failed");
} /* end else */
@@ -338,7 +342,9 @@ trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type)
info->paths[idx].path = HDstrdup(path);
info->paths[idx].type = obj_type;
info->paths[idx].fileno = 0;
- info->paths[idx].objno = HADDR_UNDEF;
+
+ /* Set token to 'undefined' values */
+ info->paths[idx].obj_token = H5O_TOKEN_UNDEF;
}
} /* end trav_info_add() */
@@ -354,15 +360,15 @@ trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type)
void
trav_fileinfo_add(trav_info_t *info, hid_t loc_id)
{
- H5O_info_t oinfo;
+ H5O_info2_t oinfo;
size_t idx = info->nused - 1;
- if ( info->paths[idx].path && HDstrcmp(info->paths[idx].path, "."))
- H5Oget_info_by_name2(loc_id, info->paths[idx].path, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT);
+ if(info->paths[idx].path && HDstrcmp(info->paths[idx].path, "."))
+ H5Oget_info_by_name3(loc_id, info->paths[idx].path, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT);
else
- H5Oget_info2(loc_id, &oinfo, H5O_INFO_BASIC);
+ H5Oget_info3(loc_id, &oinfo, H5O_INFO_BASIC);
- info->paths[idx].objno = oinfo.addr;
+ HDmemcpy(&info->paths[idx].obj_token, &oinfo.token, sizeof(H5O_token_t));
info->paths[idx].fileno = oinfo.fileno;
} /* end trav_fileinfo_add() */
@@ -377,7 +383,7 @@ trav_fileinfo_add(trav_info_t *info, hid_t loc_id)
*-------------------------------------------------------------------------
*/
int
-trav_info_visit_obj(const char *path, const H5O_info_t *oinfo,
+trav_info_visit_obj(const char *path, const H5O_info2_t *oinfo,
const char H5_ATTR_UNUSED *already_visited, void *udata)
{
size_t idx;
@@ -390,7 +396,7 @@ trav_info_visit_obj(const char *path, const H5O_info_t *oinfo,
/* set object addr and fileno. These are for checking same object */
info_p = (trav_info_t *) udata;
idx = info_p->nused - 1;
- info_p->paths[idx].objno = oinfo->addr;
+ HDmemcpy(&info_p->paths[idx].obj_token, &oinfo->token, sizeof(H5O_token_t));
info_p->paths[idx].fileno = oinfo->fileno;
return(0);
@@ -407,7 +413,7 @@ trav_info_visit_obj(const char *path, const H5O_info_t *oinfo,
*-------------------------------------------------------------------------
*/
int
-trav_info_visit_lnk(const char *path, const H5L_info_t *linfo, void *udata)
+trav_info_visit_lnk(const char *path, const H5L_info2_t *linfo, void *udata)
{
/* Add the link to the 'info' struct */
trav_info_add((trav_info_t *)udata, path, ((linfo->type == H5L_TYPE_SOFT) ? H5TRAV_TYPE_LINK : H5TRAV_TYPE_UDLINK));
@@ -547,7 +553,7 @@ trav_info_free(trav_info_t *info)
*-------------------------------------------------------------------------
*/
static int
-trav_table_visit_obj(const char *path, const H5O_info_t *oinfo,
+trav_table_visit_obj(const char *path, const H5O_info2_t *oinfo,
const char *already_visited, void *udata)
{
trav_table_t *table = (trav_table_t *)udata;
@@ -558,7 +564,7 @@ trav_table_visit_obj(const char *path, const H5O_info_t *oinfo,
trav_table_add(table, path, oinfo);
else
/* Add alias for object to table */
- trav_table_addlink(table, oinfo->addr, path);
+ trav_table_addlink(table, &oinfo->token, path);
return 0;
} /* end trav_table_visit_obj() */
@@ -574,7 +580,7 @@ trav_table_visit_obj(const char *path, const H5O_info_t *oinfo,
*-------------------------------------------------------------------------
*/
static int
-trav_table_visit_lnk(const char *path, const H5L_info_t H5_ATTR_UNUSED *linfo, void *udata)
+trav_table_visit_lnk(const char *path, const H5L_info2_t H5_ATTR_UNUSED *linfo, void *udata)
{
/* Add the link to the 'table' struct */
trav_table_add((trav_table_t *)udata, path, NULL);
@@ -663,9 +669,7 @@ h5trav_getindext(const char *name, const trav_table_t *table)
*-------------------------------------------------------------------------
*/
static void
-trav_table_add(trav_table_t *table,
- const char *path,
- const H5O_info_t *oinfo)
+trav_table_add(trav_table_t *table, const char *path, const H5O_info2_t *oinfo)
{
size_t new_obj;
@@ -676,7 +680,11 @@ trav_table_add(trav_table_t *table,
} /* end if */
new_obj = table->nobjs++;
- table->objs[new_obj].objno = oinfo ? oinfo->addr : HADDR_UNDEF;
+ if(oinfo)
+ HDmemcpy(&table->objs[new_obj].obj_token, &oinfo->token, sizeof(H5O_token_t));
+ else
+ /* Set token to 'undefined' values */
+ table->objs[new_obj].obj_token = H5O_TOKEN_UNDEF;
table->objs[new_obj].flags[0] = table->objs[new_obj].flags[1] = 0;
table->objs[new_obj].is_same_trgobj = 0;
table->objs[new_obj].name = (char *)HDstrdup(path);
@@ -696,13 +704,16 @@ trav_table_add(trav_table_t *table,
*-------------------------------------------------------------------------
*/
static void
-trav_table_addlink(trav_table_t *table, haddr_t objno, const char *path)
+trav_table_addlink(trav_table_t *table, const H5O_token_t *obj_token, const char *path)
{
size_t i; /* Local index variable */
+ int token_cmp;
if(table) {
for(i = 0; i < table->nobjs; i++) {
- if(table->objs[i].objno == objno) {
+ if(H5Otoken_cmp(table->fid, &table->objs[i].obj_token, obj_token, &token_cmp) < 0)
+ return;
+ if(!token_cmp) {
size_t n;
/* already inserted? */
@@ -720,9 +731,9 @@ trav_table_addlink(trav_table_t *table, haddr_t objno, const char *path)
table->objs[i].links[n].new_name = (char *)HDstrdup(path);
return;
- } /* end for */
+ } /* end if */
} /* end for */
- }
+ } /* end if */
}
@@ -748,7 +759,10 @@ void trav_table_addflags(unsigned *flags,
} /* end if */
new_obj = table->nobjs++;
- table->objs[new_obj].objno = 0;
+
+ /* Set token to 'undefined' values */
+ table->objs[new_obj].obj_token = H5O_TOKEN_UNDEF;
+
table->objs[new_obj].flags[0] = flags[0];
table->objs[new_obj].flags[1] = flags[1];
table->objs[new_obj].is_same_trgobj = 0;
@@ -769,10 +783,11 @@ void trav_table_addflags(unsigned *flags,
* Return: void
*-------------------------------------------------------------------------
*/
-void trav_table_init(trav_table_t **tbl)
+void trav_table_init(hid_t fid, trav_table_t **tbl)
{
trav_table_t* table = (trav_table_t*) HDmalloc(sizeof(trav_table_t));
if(table) {
+ table->fid = fid;
table->size = 0;
table->nobjs = 0;
table->objs = NULL;
@@ -893,8 +908,8 @@ trav_attr(hid_t
*-------------------------------------------------------------------------
*/
static int
-trav_print_visit_obj(const char *path, const H5O_info_t *oinfo,
- const char *already_visited, void *udata)
+trav_print_visit_obj(const char *path, const H5O_info2_t *oinfo,
+ const char *already_visited, void *udata)
{
trav_print_udata_t *print_udata = (trav_print_udata_t *)udata;
/* Print the name of the object */
@@ -951,7 +966,7 @@ trav_print_visit_obj(const char *path, const H5O_info_t *oinfo,
*-------------------------------------------------------------------------
*/
static int
-trav_print_visit_lnk(const char *path, const H5L_info_t *linfo, void *udata)
+trav_print_visit_lnk(const char *path, const H5L_info2_t *linfo, void *udata)
{
trav_print_udata_t *print_udata = (trav_print_udata_t *)udata;
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