diff options
Diffstat (limited to 'tools/lib')
| -rw-r--r-- | tools/lib/CMakeLists.txt | 16 | ||||
| -rw-r--r-- | tools/lib/Makefile.in | 78 | ||||
| -rw-r--r-- | tools/lib/h5diff_attr.c | 22 | ||||
| -rw-r--r-- | tools/lib/h5diff_dset.c | 50 | ||||
| -rw-r--r-- | tools/lib/h5tools.c | 22 | ||||
| -rw-r--r-- | tools/lib/h5tools.h | 2 | ||||
| -rw-r--r-- | tools/lib/h5tools_dump.c | 53 | ||||
| -rw-r--r-- | tools/lib/io_timer.c | 4 | ||||
| -rw-r--r-- | tools/lib/ph5diff.h | 4 |
9 files changed, 122 insertions, 129 deletions
diff --git a/tools/lib/CMakeLists.txt b/tools/lib/CMakeLists.txt index 4c145a4..c8bc187 100644 --- a/tools/lib/CMakeLists.txt +++ b/tools/lib/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.2.2) +cmake_minimum_required (VERSION 3.10) PROJECT (HDF5_TOOLS_LIB) #----------------------------------------------------------------------------- @@ -39,9 +39,12 @@ set (H5_TOOLS_LIB_HDRS add_library (${HDF5_TOOLS_LIB_TARGET} STATIC ${H5_TOOLS_LIB_SRCS} ${H5_TOOLS_LIB_HDRS}) TARGET_C_PROPERTIES (${HDF5_TOOLS_LIB_TARGET} STATIC " " " ") -target_link_libraries (${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) +target_link_libraries (${HDF5_TOOLS_LIB_TARGET} PUBLIC ${HDF5_LIB_TARGET}) +if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND) + target_link_libraries (${HDF5_TOOLS_LIB_TARGET} PRIVATE ${MPI_C_LIBRARIES}) +endif () set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_TOOLS_LIB_TARGET}") -H5_SET_LIB_OPTIONS (${HDF5_TOOLS_LIB_TARGET} ${HDF5_TOOLS_LIB_NAME} STATIC) +H5_SET_LIB_OPTIONS (${HDF5_TOOLS_LIB_TARGET} ${HDF5_TOOLS_LIB_NAME} STATIC 0) set_target_properties (${HDF5_TOOLS_LIB_TARGET} PROPERTIES FOLDER libraries/tools INTERFACE_INCLUDE_DIRECTORIES "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" @@ -52,9 +55,12 @@ set (install_targets ${HDF5_TOOLS_LIB_TARGET}) if (BUILD_SHARED_LIBS) add_library (${HDF5_TOOLS_LIBSH_TARGET} SHARED ${H5_TOOLS_LIB_SRCS} ${H5_TOOLS_LIB_HDRS}) TARGET_C_PROPERTIES (${HDF5_TOOLS_LIBSH_TARGET} SHARED " " " ") - target_link_libraries (${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) + target_link_libraries (${HDF5_TOOLS_LIBSH_TARGET} PUBLIC ${HDF5_LIBSH_TARGET}) + if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND) + target_link_libraries (${HDF5_TOOLS_LIBSH_TARGET} PRIVATE ${MPI_C_LIBRARIES}) + endif () set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_TOOLS_LIBSH_TARGET}") - H5_SET_LIB_OPTIONS (${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_TOOLS_LIB_NAME} SHARED ${HDF5_TOOLS_PACKAGE_SOVERSION}) + H5_SET_LIB_OPTIONS (${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_TOOLS_LIB_NAME} SHARED "TOOLS") set_target_properties (${HDF5_TOOLS_LIBSH_TARGET} PROPERTIES FOLDER libraries/tools COMPILE_DEFINITIONS "H5_BUILT_AS_DYNAMIC_LIB" diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in index 342b4e8..49be556 100644 --- a/tools/lib/Makefile.in +++ b/tools/lib/Makefile.in @@ -693,6 +693,7 @@ chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) TEST_EXTENSIONS = .sh SH_LOG_COMPILER = $(SHELL) AM_SH_LOG_FLAGS = +REALTIMEOUTPUT = $(realtimeOutput) TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -1170,7 +1171,6 @@ uninstall-am: help: @$(top_srcdir)/bin/makehelp - # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) @@ -1258,28 +1258,62 @@ $(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_: if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \ echo "No need to test $${tname} again."; \ else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ - else \ - echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - srcdir="$(srcdir)" \ - $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $(@:.chkexe_=.chkexe) || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee $${log}; \ + else \ + echo "============================" > $${log}; \ + fi; \ + if test "X$(FORTRAN_API)" = "Xyes"; then \ + echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + elif test "X$(CXX_API)" = "Xyes"; then \ + echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log};\ + else \ + echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ + fi; \ + else \ + echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" | tee -a $${log}; \ + else \ + echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ + fi; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "============================" | tee -a $${log}; \ + else \ + echo "============================" >> $${log}; \ + fi; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) | tee -a $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + else \ + srcdir="$(srcdir)" \ + $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ + && touch $(@:.chkexe_=.chkexe) || \ + (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ + (cat $${log} && false) || exit 1; \ + fi; \ echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ + if test -n "$(REALTIMEOUTPUT)"; then \ + echo "Finished testing $${tname} $(TEST_FLAGS)" | tee -a $${log}; \ + echo "============================" | tee -a $${log}; \ + else \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + fi; \ + if test -z "$(REALTIMEOUTPUT)"; then \ + cat $${log}; \ + fi; \ fi; \ fi diff --git a/tools/lib/h5diff_attr.c b/tools/lib/h5diff_attr.c index 6019738..7f08cc7 100644 --- a/tools/lib/h5diff_attr.c +++ b/tools/lib/h5diff_attr.c @@ -325,8 +325,6 @@ hsize_t diff_attr(hid_t loc1_id, hid_t space2_id = -1; /* space ID */ hid_t ftype1_id = -1; /* file data type ID */ hid_t ftype2_id = -1; /* file data type ID */ - int vstrtype1 = 0; /* ftype1 is a variable string */ - int vstrtype2 = 0; /* ftype2 is a variable string */ hid_t mtype1_id = -1; /* memory data type ID */ hid_t mtype2_id = -1; /* memory data type ID */ size_t msize1; /* memory size of memory type */ @@ -385,28 +383,8 @@ hsize_t diff_attr(hid_t loc1_id, /* get the datatypes */ if((ftype1_id = H5Aget_type(attr1_id)) < 0) HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type first attribute failed"); - vstrtype1 = H5Tis_variable_str(ftype1_id); if((ftype2_id = H5Aget_type(attr2_id)) < 0) HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aget_type second attribute failed"); - vstrtype2 = H5Tis_variable_str(ftype2_id); - - /* no compare if either one but not both are variable string type */ - if (vstrtype1 != vstrtype2) { - if((opts->m_verbose || opts->m_list_not_cmp)) - parallel_print("Not comparable: one of attribute <%s/%s> or <%s/%s> is of variable length type\n", - path1, name1, path2, name2); - opts->not_cmp = 1; - if (H5Tclose(ftype1_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose first attribute ftype failed"); - if (H5Tclose(ftype2_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tclose second attribute ftype failed"); - if (H5Aclose(attr1_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aclose first attribute failed"); - if (H5Aclose(attr2_id) < 0) - HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Aclose second attribute failed"); - - continue; - } if((mtype1_id = H5Tget_native_type(ftype1_id, H5T_DIR_DEFAULT)) < 0) HGOTO_ERROR(1, H5E_tools_min_id_g, "H5Tget_native_type first attribute ftype failed"); diff --git a/tools/lib/h5diff_dset.c b/tools/lib/h5diff_dset.c index 9d0462d..af6a171 100644 --- a/tools/lib/h5diff_dset.c +++ b/tools/lib/h5diff_dset.c @@ -192,7 +192,8 @@ hsize_t diff_datasetid(hid_t did1, hid_t sm_space = -1; /*stripmine data space */ size_t need; /* bytes needed for malloc */ int i; - unsigned int vl_data = 0; /*contains VL datatypes */ + unsigned int vl_data1 = 0; /*contains VL datatypes */ + unsigned int vl_data2 = 0; /*contains VL datatypes */ h5difftrace("diff_datasetid start\n"); /* Get the dataspace handle */ @@ -314,7 +315,9 @@ hsize_t diff_datasetid(hid_t did1, * VLEN memory buffer later */ if(TRUE == h5tools_detect_vlen(m_tid1)) - vl_data = TRUE; + vl_data1 = TRUE; + if(TRUE == h5tools_detect_vlen(m_tid2)) + vl_data2 = TRUE; h5diffdebug2("h5tools_detect_vlen - errstat:%d\n", opts->err_stat); /*------------------------------------------------------------------------ @@ -405,11 +408,12 @@ hsize_t diff_datasetid(hid_t did1, h5diffdebug2("diff_array nfound:%d\n", nfound); /* reclaim any VL memory, if necessary */ - if(vl_data) { - h5difftrace("check vl_data\n"); + h5diffdebug2("check vl_data1:%d\n", vl_data1); + if(vl_data1) H5Dvlen_reclaim(m_tid1, sid1, H5P_DEFAULT, buf1); + h5diffdebug2("check vl_data2:%d\n", vl_data2); + if(vl_data2) H5Dvlen_reclaim(m_tid2, sid2, H5P_DEFAULT, buf2); - } /* end if */ if(buf1 != NULL) { HDfree(buf1); buf1 = NULL; @@ -499,10 +503,10 @@ hsize_t diff_datasetid(hid_t did1, dadims, opts, name1, name2, dam_tid, did1, did2); /* reclaim any VL memory, if necessary */ - if(vl_data) { + if(vl_data1) H5Dvlen_reclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf1); - H5Dvlen_reclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf2); - } /* end if */ + if(vl_data2) + H5Dvlen_reclaim(m_tid2, sm_space, H5P_DEFAULT, sm_buf2); /* calculate the next hyperslab offset */ for(i = rank1, carry = 1; i > 0 && carry; --i) { @@ -539,29 +543,29 @@ done: /* free */ if(buf1 != NULL) { /* reclaim any VL memory, if necessary */ - if(vl_data) + if(vl_data1) H5Dvlen_reclaim(m_tid1, sid1, H5P_DEFAULT, buf1); HDfree(buf1); buf1 = NULL; } if(buf2 != NULL) { /* reclaim any VL memory, if necessary */ - if(vl_data) + if(vl_data2) H5Dvlen_reclaim(m_tid2, sid2, H5P_DEFAULT, buf2); HDfree(buf2); buf2 = NULL; } if(sm_buf1 != NULL) { /* reclaim any VL memory, if necessary */ - if(vl_data) + if(vl_data1) H5Dvlen_reclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf1); HDfree(sm_buf1); sm_buf1 = NULL; } if(sm_buf2 != NULL) { /* reclaim any VL memory, if necessary */ - if(vl_data) - H5Dvlen_reclaim(m_tid1, sm_space, H5P_DEFAULT, sm_buf2); + if(vl_data2) + H5Dvlen_reclaim(m_tid2, sm_space, H5P_DEFAULT, sm_buf2); HDfree(sm_buf2); sm_buf2 = NULL; } @@ -570,6 +574,7 @@ done: H5E_BEGIN_TRY { H5Sclose(sid1); H5Sclose(sid2); + H5Sclose(sm_space); H5Tclose(f_tid1); H5Tclose(f_tid2); H5Tclose(m_tid1); @@ -761,12 +766,31 @@ int diff_can_type(hid_t f_tid1, /* file data type */ } } + if(tclass1 == H5T_STRING) { + htri_t vstrtype1 = -1; + htri_t vstrtype2 = -1; + h5difftrace("diff_can_type end - H5T_STRING\n"); + + vstrtype1 = H5Tis_variable_str(f_tid1); + vstrtype2 = H5Tis_variable_str(f_tid2); + + /* no compare if either one but not both are variable string type */ + if (vstrtype1 != vstrtype2) { + if((opts->m_verbose || opts->m_list_not_cmp) && obj1_name && obj2_name) + parallel_print("Not comparable: <%s> or <%s> is of mixed string type\n", + obj1_name, obj2_name); + opts->not_cmp = 1; + HGOTO_DONE(0); + } + } + if(tclass1 == H5T_COMPOUND) { int nmembs1; int nmembs2; int j; hid_t memb_type1 = -1; hid_t memb_type2 = -1; + h5difftrace("diff_can_type end - H5T_COMPOUND\n"); nmembs1 = H5Tget_nmembers(f_tid1); nmembs2 = H5Tget_nmembers(f_tid2); diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c index 9230bb1..8ceaecc 100644 --- a/tools/lib/h5tools.c +++ b/tools/lib/h5tools.c @@ -43,7 +43,7 @@ unsigned packed_bits_num; /* number of packed bits to display */ unsigned packed_data_offset; /* offset of packed bits to display */ unsigned packed_data_length; /* length of packed bits to display */ unsigned long long packed_data_mask; /* mask in which packed bits to display */ -int enable_error_stack= FALSE; /* re-enable error stack */ +int enable_error_stack = 0; /* re-enable error stack; disable=0 enable=1 */ /* sort parameters */ H5_index_t sort_by = H5_INDEX_NAME; /*sort_by [creation_order | name] */ @@ -548,9 +548,15 @@ h5tools_fopen(const char *fname, unsigned flags, hid_t fapl, const char *driver, if ((my_fapl = h5tools_get_fapl(fapl, driver, &drivernum)) < 0) goto done; - H5E_BEGIN_TRY { + /* allow error stack display if enable-error-stack has optional arg number */ + if (enable_error_stack > 1) { fid = H5Fopen(fname, flags, my_fapl); - } H5E_END_TRY; + } + else { + H5E_BEGIN_TRY { + fid = H5Fopen(fname, flags, my_fapl); + } H5E_END_TRY; + } if (fid == FAIL) goto done; @@ -563,9 +569,15 @@ h5tools_fopen(const char *fname, unsigned flags, hid_t fapl, const char *driver, if((my_fapl = h5tools_get_fapl(fapl, drivernames[drivernum], NULL)) < 0) goto done; - H5E_BEGIN_TRY { + /* allow error stack display if enable-error-stack has optional arg number */ + if (enable_error_stack > 1) { fid = H5Fopen(fname, flags, my_fapl); - } H5E_END_TRY; + } + else { + H5E_BEGIN_TRY { + fid = H5Fopen(fname, flags, my_fapl); + } H5E_END_TRY; + } if (fid != FAIL) break; diff --git a/tools/lib/h5tools.h b/tools/lib/h5tools.h index 09ec527..e24d654 100644 --- a/tools/lib/h5tools.h +++ b/tools/lib/h5tools.h @@ -545,7 +545,7 @@ H5TOOLS_DLLVAR H5_index_t sort_by; /*sort_by [creation_order | name] * H5TOOLS_DLLVAR H5_iter_order_t sort_order; /*sort_order [ascending | descending] */ /* things to display or which are set via command line parameters */ -H5TOOLS_DLLVAR int enable_error_stack; /* re-enable error stack */ +H5TOOLS_DLLVAR int enable_error_stack; /* re-enable error stack; disable=0 enable=1 */ /* Strings for output */ #define H5_TOOLS_GROUP "GROUP" diff --git a/tools/lib/h5tools_dump.c b/tools/lib/h5tools_dump.c index 31c54d3..7ec5da8 100644 --- a/tools/lib/h5tools_dump.c +++ b/tools/lib/h5tools_dump.c @@ -2060,7 +2060,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); @@ -2071,7 +2070,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ h5tools_render_element(stream, info, ctx, buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); @@ -2111,7 +2109,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ h5tools_render_element(stream, info, ctx, buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); @@ -2150,7 +2147,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ h5tools_render_element(stream, info, ctx, buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); @@ -2225,7 +2221,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); if(H5Tclose(str_type) < 0) @@ -2268,7 +2263,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_tag failed"); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); h5tools_str_append(buffer, "OPAQUE_TAG \"%s\";", ttag); @@ -2279,7 +2273,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); h5tools_str_append(buffer, "%s", h5tools_dump_header_format->structblockend); @@ -2298,7 +2291,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ mname = H5Tget_member_name(type, i); if((mtype = H5Tget_member_type(type, i)) >= 0) { ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); h5tools_print_datatype(stream, buffer, info, ctx, mtype, TRUE); @@ -2315,7 +2307,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); h5tools_str_append(buffer, "%s", h5tools_dump_header_format->structblockend); @@ -2340,7 +2331,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); h5tools_print_datatype(stream, buffer, info, ctx, super, TRUE); @@ -2356,7 +2346,6 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(buffer); h5tools_str_append(buffer, "%s", h5tools_dump_header_format->enumblockend); @@ -2772,7 +2761,6 @@ h5tools_dump_oid(FILE *stream, const h5tool_format_t *info, ncols = info->line_ncols; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s %d %s", OBJID, BEGIN, oid, END); @@ -2862,7 +2850,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, *------------------------------------------------------------------------- */ ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s", STORAGE_LAYOUT, BEGIN); @@ -2873,7 +2860,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, case H5D_CHUNKED: ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s ", CHUNKED); @@ -2886,7 +2872,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); @@ -2942,14 +2927,12 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, case H5D_COMPACT: ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", COMPACT); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "SIZE " HSIZE_T_FORMAT, storage_size); @@ -2969,14 +2952,12 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level++; if (next) { ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", CONTIGUOUS); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s", EXTERNAL, BEGIN); @@ -2987,7 +2968,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, H5Pget_external(dcpl_id, j, sizeof(name), name, &offset, &size); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "FILENAME %s SIZE " HSIZE_T_FORMAT, name, size); @@ -2997,7 +2977,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); @@ -3007,21 +2986,18 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, haddr_t ioffset; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", CONTIGUOUS); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer,"SIZE " HSIZE_T_FORMAT, storage_size); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t) ncols, (hsize_t) 0, (hsize_t) 0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); ioffset = H5Dget_offset(obj_id); @@ -3041,7 +3017,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, }/*switch*/ ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); @@ -3053,7 +3028,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, */ ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s", FILTERS, BEGIN); @@ -3071,7 +3045,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, continue; /* nothing to print for invalid filter */ ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); switch(filtn) { @@ -3097,14 +3070,12 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "PIXELS_PER_BLOCK %d", szip_pixels_per_block); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); if(szip_options_mask & H5_SZIP_CHIP_OPTION_MASK) @@ -3114,7 +3085,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); if(szip_options_mask & H5_SZIP_EC_OPTION_MASK) @@ -3124,7 +3094,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); if(szip_options_mask & H5_SZIP_LSB_OPTION_MASK) @@ -3135,7 +3104,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, if(szip_options_mask & H5_SZIP_RAW_OPTION_MASK) { ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "HEADER %s", "RAW"); @@ -3145,7 +3113,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); @@ -3166,7 +3133,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "FILTER_ID %d", filtn); @@ -3174,7 +3140,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, if(f_name[0] != '\0') { ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "COMMENT %s", f_name); @@ -3182,7 +3147,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, } if (cd_nelmts) { ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ","PARAMS", BEGIN); @@ -3194,7 +3158,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); @@ -3206,7 +3169,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, else { ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "NONE"); @@ -3215,7 +3177,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); @@ -3226,7 +3187,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, *------------------------------------------------------------------------- */ ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s", FILLVALUE, BEGIN); @@ -3235,7 +3195,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "FILL_TIME "); @@ -3259,7 +3218,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s ", "VALUE "); @@ -3285,7 +3243,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); @@ -3296,7 +3253,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, *------------------------------------------------------------------------- */ ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "ALLOCATION_TIME %s", BEGIN); @@ -3305,7 +3261,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); H5Pget_alloc_time(dcpl_id, &at); @@ -3330,7 +3285,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->indent_level--; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); @@ -3423,7 +3377,6 @@ h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, ncols = info->line_ncols; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s \"%s\" %s", @@ -3460,7 +3413,6 @@ h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, } ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(&buffer); @@ -3579,7 +3531,6 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, ncols = info->line_ncols; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->subsettingbegin, h5tools_dump_header_format->subsettingblockbegin); @@ -3588,7 +3539,6 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, ctx->indent_level++; ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->startbegin, h5tools_dump_header_format->startblockbegin); @@ -3597,7 +3547,6 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->stridebegin, h5tools_dump_header_format->strideblockbegin); @@ -3606,7 +3555,6 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->countbegin, h5tools_dump_header_format->countblockbegin); @@ -3620,7 +3568,6 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->blockbegin, h5tools_dump_header_format->blockblockbegin); diff --git a/tools/lib/io_timer.c b/tools/lib/io_timer.c index c894598..ab184d3 100644 --- a/tools/lib/io_timer.c +++ b/tools/lib/io_timer.c @@ -25,10 +25,6 @@ #include "H5private.h" #include "hdf5.h" -#ifdef H5_HAVE_PARALLEL -#include <mpi.h> -#endif - #include "io_timer.h" /* diff --git a/tools/lib/ph5diff.h b/tools/lib/ph5diff.h index 21d7d00..2189e31 100644 --- a/tools/lib/ph5diff.h +++ b/tools/lib/ph5diff.h @@ -42,9 +42,5 @@ struct diffs_found int not_cmp; }; -#ifdef H5_HAVE_PARALLEL -#include <mpi.h> -#endif - #endif /* _PH5DIFF_H__ */ |