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-rw-r--r--tools/src/h5copy/h5copy.c338
1 files changed, 171 insertions, 167 deletions
diff --git a/tools/src/h5copy/h5copy.c b/tools/src/h5copy/h5copy.c
index 5b19ae7..daa3b62 100644
--- a/tools/src/h5copy/h5copy.c
+++ b/tools/src/h5copy/h5copy.c
@@ -19,25 +19,23 @@
#define PROGRAMNAME "h5copy"
/* command-line options: short and long-named parameters */
-static const char *s_opts = "d:f:hi:o:ps:vVE";
-static struct long_options l_opts[] = {
- { "destination", require_arg, 'd' },
- { "flag", require_arg, 'f' },
- { "help", no_arg, 'h' },
- { "input", require_arg, 'i' },
- { "output", require_arg, 'o' },
- { "parents", no_arg, 'p' },
- { "source", require_arg, 's' },
- { "verbose", no_arg, 'v' },
- { "version", no_arg, 'V' },
- { "enable-error-stack", no_arg, 'E' },
- { NULL, 0, '\0' }
-};
-char *fname_src = NULL;
-char *fname_dst = NULL;
-char *oname_src = NULL;
-char *oname_dst = NULL;
-char *str_flag = NULL;
+static const char * s_opts = "d:f:hi:o:ps:vVE";
+static struct long_options l_opts[] = {{"destination", require_arg, 'd'},
+ {"flag", require_arg, 'f'},
+ {"help", no_arg, 'h'},
+ {"input", require_arg, 'i'},
+ {"output", require_arg, 'o'},
+ {"parents", no_arg, 'p'},
+ {"source", require_arg, 's'},
+ {"verbose", no_arg, 'v'},
+ {"version", no_arg, 'V'},
+ {"enable-error-stack", no_arg, 'E'},
+ {NULL, 0, '\0'}};
+char * fname_src = NULL;
+char * fname_dst = NULL;
+char * oname_src = NULL;
+char * oname_dst = NULL;
+char * str_flag = NULL;
/*-------------------------------------------------------------------------
* Function: leave
@@ -71,7 +69,6 @@ leave(int ret)
HDexit(ret);
}
-
/*-------------------------------------------------------------------------
* Function: usage
*
@@ -86,7 +83,7 @@ leave(int ret)
*-------------------------------------------------------------------------
*/
static void
-usage (void)
+usage(void)
{
FLUSHSTREAM(rawoutstream);
PRINTVALSTREAM(rawoutstream, "\n");
@@ -98,29 +95,41 @@ usage (void)
PRINTVALSTREAM(rawoutstream, " -d, --destination destination object name\n");
PRINTVALSTREAM(rawoutstream, " OPTIONS\n");
PRINTVALSTREAM(rawoutstream, " -h, --help Print a usage message and exit\n");
- PRINTVALSTREAM(rawoutstream, " -p, --parents No error if existing, make parent groups as needed\n");
+ PRINTVALSTREAM(rawoutstream,
+ " -p, --parents No error if existing, make parent groups as needed\n");
PRINTVALSTREAM(rawoutstream, " -v, --verbose Print information about OBJECTS and OPTIONS\n");
PRINTVALSTREAM(rawoutstream, " -V, --version Print version number and exit\n");
PRINTVALSTREAM(rawoutstream, " --enable-error-stack\n");
- PRINTVALSTREAM(rawoutstream, " Prints messages from the HDF5 error stack as they occur.\n");
+ PRINTVALSTREAM(rawoutstream,
+ " Prints messages from the HDF5 error stack as they occur.\n");
PRINTVALSTREAM(rawoutstream, " -f, --flag Flag type\n\n");
PRINTVALSTREAM(rawoutstream, " Flag type is one of the following strings:\n\n");
PRINTVALSTREAM(rawoutstream, " shallow Copy only immediate members for groups\n\n");
PRINTVALSTREAM(rawoutstream, " soft Expand soft links into new objects\n\n");
PRINTVALSTREAM(rawoutstream, " ext Expand external links into new objects\n\n");
- PRINTVALSTREAM(rawoutstream, " ref Copy references and any referenced objects, i.e., objects\n");
+ PRINTVALSTREAM(rawoutstream,
+ " ref Copy references and any referenced objects, i.e., objects\n");
PRINTVALSTREAM(rawoutstream, " that the references point to.\n");
- PRINTVALSTREAM(rawoutstream, " Referenced objects are copied in addition to the objects\n");
- PRINTVALSTREAM(rawoutstream, " specified on the command line and reference datasets are\n");
- PRINTVALSTREAM(rawoutstream, " populated with correct reference values. Copies of referenced\n");
- PRINTVALSTREAM(rawoutstream, " datasets outside the copy range specified on the command line\n");
- PRINTVALSTREAM(rawoutstream, " will normally have a different name from the original.\n");
- PRINTVALSTREAM(rawoutstream, " (Default:Without this option, reference value(s) in any\n");
- PRINTVALSTREAM(rawoutstream, " reference datasets are set to NULL and referenced objects are\n");
- PRINTVALSTREAM(rawoutstream, " not copied unless they are otherwise within the copy range\n");
+ PRINTVALSTREAM(rawoutstream,
+ " Referenced objects are copied in addition to the objects\n");
+ PRINTVALSTREAM(rawoutstream,
+ " specified on the command line and reference datasets are\n");
+ PRINTVALSTREAM(rawoutstream,
+ " populated with correct reference values. Copies of referenced\n");
+ PRINTVALSTREAM(rawoutstream,
+ " datasets outside the copy range specified on the command line\n");
+ PRINTVALSTREAM(rawoutstream,
+ " will normally have a different name from the original.\n");
+ PRINTVALSTREAM(rawoutstream,
+ " (Default:Without this option, reference value(s) in any\n");
+ PRINTVALSTREAM(rawoutstream,
+ " reference datasets are set to NULL and referenced objects are\n");
+ PRINTVALSTREAM(rawoutstream,
+ " not copied unless they are otherwise within the copy range\n");
PRINTVALSTREAM(rawoutstream, " specified on the command line.)\n\n");
PRINTVALSTREAM(rawoutstream, " noattr Copy object without copying attributes\n\n");
- PRINTVALSTREAM(rawoutstream, " allflags Switches all flags from the default to the non-default setting\n\n");
+ PRINTVALSTREAM(rawoutstream,
+ " allflags Switches all flags from the default to the non-default setting\n\n");
PRINTVALSTREAM(rawoutstream, " These flag types correspond to the following API symbols\n\n");
PRINTVALSTREAM(rawoutstream, " H5O_COPY_SHALLOW_HIERARCHY_FLAG\n");
PRINTVALSTREAM(rawoutstream, " H5O_COPY_EXPAND_SOFT_LINK_FLAG\n");
@@ -130,8 +139,6 @@ usage (void)
PRINTVALSTREAM(rawoutstream, " H5O_COPY_ALL\n");
}
-
-
/*-------------------------------------------------------------------------
* Function: parse_flag
*
@@ -156,30 +163,30 @@ usage (void)
*-------------------------------------------------------------------------
*/
-
-static int parse_flag(const char* s_flag, unsigned *flag)
+static int
+parse_flag(const char *s_flag, unsigned *flag)
{
- unsigned fla=0;
+ unsigned fla = 0;
if (HDstrcmp(s_flag, "shallow") == 0) {
fla = H5O_COPY_SHALLOW_HIERARCHY_FLAG;
}
- else if (HDstrcmp(s_flag, "soft") == 0) {
+ else if (HDstrcmp(s_flag, "soft") == 0) {
fla = H5O_COPY_EXPAND_SOFT_LINK_FLAG;
}
- else if (HDstrcmp(s_flag, "ext") == 0) {
+ else if (HDstrcmp(s_flag, "ext") == 0) {
fla = H5O_COPY_EXPAND_EXT_LINK_FLAG;
}
- else if (HDstrcmp(s_flag, "ref") == 0) {
+ else if (HDstrcmp(s_flag, "ref") == 0) {
fla = H5O_COPY_EXPAND_REFERENCE_FLAG;
}
- else if (HDstrcmp(s_flag, "noattr") == 0) {
+ else if (HDstrcmp(s_flag, "noattr") == 0) {
fla = H5O_COPY_WITHOUT_ATTR_FLAG;
}
- else if (HDstrcmp(s_flag, "allflags") == 0) {
+ else if (HDstrcmp(s_flag, "allflags") == 0) {
fla = H5O_COPY_ALL;
}
- else if (HDstrcmp(s_flag, "nullmsg") == 0) {
+ else if (HDstrcmp(s_flag, "nullmsg") == 0) {
fla = H5O_COPY_PRESERVE_NULL_FLAG;
}
else {
@@ -205,19 +212,19 @@ static int parse_flag(const char* s_flag, unsigned *flag)
*/
int
-main (int argc, const char *argv[])
+main(int argc, const char *argv[])
{
- hid_t fid_src = H5I_INVALID_HID;
- hid_t fid_dst = H5I_INVALID_HID;
- unsigned flag = 0;
- unsigned verbose = 0;
- unsigned parents = 0;
- hid_t ocpl_id = (-1); /* Object copy property list */
- hid_t lcpl_id = (-1); /* Link creation property list */
- int opt;
- int li_ret;
+ hid_t fid_src = H5I_INVALID_HID;
+ hid_t fid_dst = H5I_INVALID_HID;
+ unsigned flag = 0;
+ unsigned verbose = 0;
+ unsigned parents = 0;
+ hid_t ocpl_id = (-1); /* Object copy property list */
+ hid_t lcpl_id = (-1); /* Link creation property list */
+ int opt;
+ int li_ret;
h5tool_link_info_t linkinfo;
- int ret_value = 0;
+ int ret_value = 0;
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
@@ -229,7 +236,7 @@ main (int argc, const char *argv[])
HDmemset(&linkinfo, 0, sizeof(h5tool_link_info_t));
/* Check for no command line parameters */
- if(argc == 1) {
+ if (argc == 1) {
usage();
leave(EXIT_FAILURE);
} /* end if */
@@ -237,82 +244,82 @@ main (int argc, const char *argv[])
/* parse command line options */
while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
switch ((char)opt) {
- case 'd':
- oname_dst = HDstrdup(opt_arg);
- break;
+ case 'd':
+ oname_dst = HDstrdup(opt_arg);
+ break;
+
+ case 'f':
+ /* validate flag */
+ if (parse_flag(opt_arg, &flag) < 0) {
+ usage();
+ leave(EXIT_FAILURE);
+ }
+ str_flag = HDstrdup(opt_arg);
+ break;
+
+ case 'h':
+ usage();
+ leave(EXIT_SUCCESS);
+ break;
+
+ case 'i':
+ fname_src = HDstrdup(opt_arg);
+ break;
+
+ case 'o':
+ fname_dst = HDstrdup(opt_arg);
+ break;
+
+ case 'p':
+ parents = 1;
+ break;
- case 'f':
- /* validate flag */
- if (parse_flag(opt_arg, &flag) < 0) {
+ case 's':
+ oname_src = HDstrdup(opt_arg);
+ break;
+
+ case 'V':
+ print_version(h5tools_getprogname());
+ leave(EXIT_SUCCESS);
+ break;
+
+ case 'v':
+ verbose = 1;
+ break;
+
+ case 'E':
+ enable_error_stack = 1;
+ break;
+
+ default:
usage();
leave(EXIT_FAILURE);
- }
- str_flag = HDstrdup(opt_arg);
- break;
-
- case 'h':
- usage();
- leave(EXIT_SUCCESS);
- break;
-
- case 'i':
- fname_src = HDstrdup(opt_arg);
- break;
-
- case 'o':
- fname_dst = HDstrdup(opt_arg);
- break;
-
- case 'p':
- parents = 1;
- break;
-
- case 's':
- oname_src = HDstrdup(opt_arg);
- break;
-
- case 'V':
- print_version(h5tools_getprogname());
- leave(EXIT_SUCCESS);
- break;
-
- case 'v':
- verbose = 1;
- break;
-
- case 'E':
- enable_error_stack = 1;
- break;
-
- default:
- usage();
- leave(EXIT_FAILURE);
}
} /* end of while */
-/*-------------------------------------------------------------------------
- * check for missing file/object names
- *-------------------------------------------------------------------------*/
+ /*-------------------------------------------------------------------------
+ * check for missing file/object names
+ *-------------------------------------------------------------------------*/
- if (fname_src==NULL) {
+ if (fname_src == NULL) {
error_msg("Input file name missing\n");
usage();
leave(EXIT_FAILURE);
}
- if (fname_dst==NULL) {
+ if (fname_dst == NULL) {
error_msg("Output file name missing\n");
usage();
leave(EXIT_FAILURE);
}
- if (oname_src==NULL) {
+ if (oname_src == NULL) {
error_msg("Source object name missing\n");
usage();
leave(EXIT_FAILURE);
}
- if (oname_dst==NULL) {
+ if (oname_dst == NULL) {
error_msg("Destination object name missing\n");
usage();
leave(EXIT_FAILURE);
@@ -321,63 +328,61 @@ main (int argc, const char *argv[])
/* enable error reporting if command line option */
h5tools_error_report();
- /*-------------------------------------------------------------------------
- * open output file
- *-------------------------------------------------------------------------*/
+ /*-------------------------------------------------------------------------
+ * open output file
+ *-------------------------------------------------------------------------*/
/* Attempt to open an existing HDF5 file first. Need to open the dst file
before the src file just in case that the dst and src are the same file
*/
fid_dst = h5tools_fopen(fname_dst, H5F_ACC_RDWR, H5P_DEFAULT, FALSE, NULL, 0);
- /*-------------------------------------------------------------------------
- * open input file
- *-------------------------------------------------------------------------*/
+ /*-------------------------------------------------------------------------
+ * open input file
+ *-------------------------------------------------------------------------*/
fid_src = h5tools_fopen(fname_src, H5F_ACC_RDONLY, H5P_DEFAULT, FALSE, NULL, 0);
- /*-------------------------------------------------------------------------
- * test for error in opening input file
- *-------------------------------------------------------------------------*/
- if (fid_src==-1) {
+ /*-------------------------------------------------------------------------
+ * test for error in opening input file
+ *-------------------------------------------------------------------------*/
+ if (fid_src == -1) {
error_msg("Could not open input file <%s>...Exiting\n", fname_src);
leave(EXIT_FAILURE);
}
-
- /*-------------------------------------------------------------------------
- * create an output file when failed to open it
- *-------------------------------------------------------------------------*/
+ /*-------------------------------------------------------------------------
+ * create an output file when failed to open it
+ *-------------------------------------------------------------------------*/
/* If we couldn't open an existing file, try creating file */
/* (use "EXCL" instead of "TRUNC", so we don't blow away existing non-HDF5 file) */
- if(fid_dst < 0)
+ if (fid_dst < 0)
fid_dst = H5Fcreate(fname_dst, H5F_ACC_EXCL, H5P_DEFAULT, H5P_DEFAULT);
- /*-------------------------------------------------------------------------
- * test for error in opening output file
- *-------------------------------------------------------------------------*/
- if (fid_dst==-1) {
+ /*-------------------------------------------------------------------------
+ * test for error in opening output file
+ *-------------------------------------------------------------------------*/
+ if (fid_dst == -1) {
error_msg("Could not open output file <%s>...Exiting\n", fname_dst);
leave(EXIT_FAILURE);
}
- /*-------------------------------------------------------------------------
- * print some info
- *-------------------------------------------------------------------------*/
+ /*-------------------------------------------------------------------------
+ * print some info
+ *-------------------------------------------------------------------------*/
if (verbose) {
- HDprintf("Copying file <%s> and object <%s> to file <%s> and object <%s>\n",
- fname_src, oname_src, fname_dst, oname_dst);
+ HDprintf("Copying file <%s> and object <%s> to file <%s> and object <%s>\n", fname_src, oname_src,
+ fname_dst, oname_dst);
if (flag) {
HDprintf("Using %s flag\n", str_flag);
}
}
-
- /*-------------------------------------------------------------------------
- * create property lists for copy
- *-------------------------------------------------------------------------*/
+ /*-------------------------------------------------------------------------
+ * create property lists for copy
+ *-------------------------------------------------------------------------*/
/* create property to pass copy options */
if ((ocpl_id = H5Pcreate(H5P_OBJECT_COPY)) < 0)
@@ -385,42 +390,42 @@ main (int argc, const char *argv[])
/* set options for object copy */
if (flag) {
- if ( H5Pset_copy_object(ocpl_id, flag) < 0)
+ if (H5Pset_copy_object(ocpl_id, flag) < 0)
H5TOOLS_GOTO_ERROR(EXIT_FAILURE, "H5Pset_copy_object failed");
}
/* Create link creation property list */
- if((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) {
+ if ((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) {
error_msg("Could not create link creation property list\n");
H5TOOLS_GOTO_ERROR(EXIT_FAILURE, "H5Pcreate failed");
} /* end if */
/* Check for creating intermediate groups */
- if(parents) {
+ if (parents) {
/* Set the intermediate group creation property */
- if(H5Pset_create_intermediate_group(lcpl_id, 1) < 0) {
+ if (H5Pset_create_intermediate_group(lcpl_id, 1) < 0) {
error_msg("Could not set property for creating parent groups\n");
H5TOOLS_GOTO_ERROR(EXIT_FAILURE, "H5Pset_create_intermediate_group failed");
} /* end if */
/* Display some output if requested */
- if(verbose)
+ if (verbose)
HDprintf("%s: Creating parent groups\n", h5tools_getprogname());
} /* end if */
else {
/* error, if parent groups doesn't already exist in destination file */
- size_t i, len;
+ size_t i, len;
len = HDstrlen(oname_dst);
/* check if all the parents groups exist. skip root group */
for (i = 1; i < len; i++) {
- if ('/'==oname_dst[i]) {
- char *str_ptr;
+ if ('/' == oname_dst[i]) {
+ char *str_ptr;
str_ptr = (char *)HDcalloc(i + 1, sizeof(char));
HDstrncpy(str_ptr, oname_dst, i);
- str_ptr[i]='\0';
+ str_ptr[i] = '\0';
if (H5Lexists(fid_dst, str_ptr, H5P_DEFAULT) <= 0) {
error_msg("group <%s> doesn't exist. Use -p to create parent groups.\n", str_ptr);
HDfree(str_ptr);
@@ -431,29 +436,27 @@ main (int argc, const char *argv[])
}
}
- /*-------------------------------------------------------------------------
- * do the copy
- *-------------------------------------------------------------------------*/
+ /*-------------------------------------------------------------------------
+ * do the copy
+ *-------------------------------------------------------------------------*/
- if(verbose)
+ if (verbose)
linkinfo.opt.msg_mode = 1;
li_ret = H5tools_get_symlink_info(fid_src, oname_src, &linkinfo, 1);
if (li_ret == 0) {
/* dangling link */
- if(H5Lcopy(fid_src, oname_src,
- fid_dst, oname_dst,
- H5P_DEFAULT, H5P_DEFAULT) < 0)
+ if (H5Lcopy(fid_src, oname_src, fid_dst, oname_dst, H5P_DEFAULT, H5P_DEFAULT) < 0)
H5TOOLS_GOTO_ERROR(EXIT_FAILURE, "H5Lcopy failed");
}
else {
/* valid link */
- if (H5Ocopy(fid_src, /* Source file or group identifier */
- oname_src, /* Name of the source object to be copied */
- fid_dst, /* Destination file or group identifier */
- oname_dst, /* Name of the destination object */
- ocpl_id, /* Object copy property list */
- lcpl_id)<0) /* Link creation property list */
+ if (H5Ocopy(fid_src, /* Source file or group identifier */
+ oname_src, /* Name of the source object to be copied */
+ fid_dst, /* Destination file or group identifier */
+ oname_dst, /* Name of the destination object */
+ ocpl_id, /* Object copy property list */
+ lcpl_id) < 0) /* Link creation property list */
H5TOOLS_GOTO_ERROR(EXIT_FAILURE, "H5Ocopy failed");
}
@@ -462,15 +465,15 @@ main (int argc, const char *argv[])
HDfree(linkinfo.trg_path);
/* close propertis */
- if(H5Pclose(ocpl_id)<0)
+ if (H5Pclose(ocpl_id) < 0)
H5TOOLS_GOTO_ERROR(EXIT_FAILURE, "H5Pclose failed");
- if(H5Pclose(lcpl_id)<0)
+ if (H5Pclose(lcpl_id) < 0)
H5TOOLS_GOTO_ERROR(EXIT_FAILURE, "H5Pclose failed");
/* close files */
- if (H5Fclose(fid_src)<0)
+ if (H5Fclose(fid_src) < 0)
H5TOOLS_GOTO_ERROR(EXIT_FAILURE, "H5Fclose failed");
- if (H5Fclose(fid_dst)<0)
+ if (H5Fclose(fid_dst) < 0)
H5TOOLS_GOTO_ERROR(EXIT_FAILURE, "H5Fclose failed");
leave(EXIT_SUCCESS);
@@ -482,13 +485,14 @@ done:
if (linkinfo.trg_path)
HDfree(linkinfo.trg_path);
- H5E_BEGIN_TRY {
+ H5E_BEGIN_TRY
+ {
H5Pclose(ocpl_id);
H5Pclose(lcpl_id);
H5Fclose(fid_src);
H5Fclose(fid_dst);
- } H5E_END_TRY;
+ }
+ H5E_END_TRY;
leave(ret_value);
}
-
generated by cgit v0.12 at 2024-07-19 18:02:30 (GMT)