diff options
Diffstat (limited to 'tools/src/h5format_convert')
-rw-r--r-- | tools/src/h5format_convert/h5format_convert.c | 259 |
1 files changed, 129 insertions, 130 deletions
diff --git a/tools/src/h5format_convert/h5format_convert.c b/tools/src/h5format_convert/h5format_convert.c index e60097b..203ad2b 100644 --- a/tools/src/h5format_convert/h5format_convert.c +++ b/tools/src/h5format_convert/h5format_convert.c @@ -15,7 +15,6 @@ * Programmer: Vailin Choi; Feb 2015 */ - /* * We include the private header file so we can get to the uniform * programming environment it declares. @@ -29,42 +28,39 @@ /* Name of tool */ #define PROGRAMNAME "h5format_convert" -static char *fname_g = NULL; -static char *dname_g = NULL; -static int dset_g = FALSE; -static int noop_g = FALSE; -static int verbose_g = 0; +static char *fname_g = NULL; +static char *dname_g = NULL; +static int dset_g = FALSE; +static int noop_g = FALSE; +static int verbose_g = 0; /* * Command-line options: The user can specify short or long-named * parameters. */ -static const char *s_opts = "hVvd:n"; -static struct long_options l_opts[] = { - { "help", no_arg, 'h' }, - { "hel", no_arg, 'h'}, - { "he", no_arg, 'h'}, - { "version", no_arg, 'V' }, - { "version", no_arg, 'V' }, - { "versio", no_arg, 'V' }, - { "versi", no_arg, 'V' }, - { "vers", no_arg, 'V' }, - { "verbose", no_arg, 'v' }, - { "verbos", no_arg, 'v' }, - { "verbo", no_arg, 'v' }, - { "verb", no_arg, 'v' }, - { "dname", require_arg, 'd' }, - { "dnam", require_arg, 'd' }, - { "dna", require_arg, 'd' }, - { "dn", require_arg, 'd' }, - { "noop", no_arg, 'n' }, - { "noo", no_arg, 'n' }, - { "no", no_arg, 'n' }, - { "enable-error-stack", no_arg, 'E' }, - { NULL, 0, '\0' } -}; - - +static const char * s_opts = "hVvd:n"; +static struct long_options l_opts[] = {{"help", no_arg, 'h'}, + {"hel", no_arg, 'h'}, + {"he", no_arg, 'h'}, + {"version", no_arg, 'V'}, + {"version", no_arg, 'V'}, + {"versio", no_arg, 'V'}, + {"versi", no_arg, 'V'}, + {"vers", no_arg, 'V'}, + {"verbose", no_arg, 'v'}, + {"verbos", no_arg, 'v'}, + {"verbo", no_arg, 'v'}, + {"verb", no_arg, 'v'}, + {"dname", require_arg, 'd'}, + {"dnam", require_arg, 'd'}, + {"dna", require_arg, 'd'}, + {"dn", require_arg, 'd'}, + {"noop", no_arg, 'n'}, + {"noo", no_arg, 'n'}, + {"no", no_arg, 'n'}, + {"enable-error-stack", no_arg, 'E'}, + {NULL, 0, '\0'}}; + /*------------------------------------------------------------------------- * Function: usage * @@ -74,7 +70,8 @@ static struct long_options l_opts[] = { * *------------------------------------------------------------------------- */ -static void usage(const char *prog) +static void +usage(const char *prog) { HDfprintf(stdout, "usage: %s [OPTIONS] file_name\n", prog); HDfprintf(stdout, " OPTIONS\n"); @@ -118,7 +115,7 @@ parse_command_line(int argc, const char **argv) { int opt; - /* no arguments */ + /* no arguments */ if (argc == 1) { usage(h5tools_getprogname()); h5tools_setstatus(EXIT_FAILURE); @@ -127,7 +124,7 @@ parse_command_line(int argc, const char **argv) /* parse command line options */ while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) { - switch((char) opt) { + switch ((char)opt) { case 'h': usage(h5tools_getprogname()); h5tools_setstatus(EXIT_SUCCESS); @@ -143,9 +140,9 @@ parse_command_line(int argc, const char **argv) break; case 'd': /* -d dname */ - if(opt_arg != NULL && *opt_arg) + if (opt_arg != NULL && *opt_arg) dname_g = HDstrdup(opt_arg); - if(dname_g == NULL) { + if (dname_g == NULL) { h5tools_setstatus(EXIT_FAILURE); error_msg("No dataset name\n", opt_arg); usage(h5tools_getprogname()); @@ -168,7 +165,7 @@ parse_command_line(int argc, const char **argv) goto error; break; } /* switch */ - } /* while */ + } /* while */ if (argc <= opt_ind) { error_msg("missing file name\n"); @@ -179,13 +176,13 @@ parse_command_line(int argc, const char **argv) fname_g = HDstrdup(argv[opt_ind]); - return(0); + return (0); error: - return(-1); ; + return (-1); + ; } /* parse_command_line() */ - /*------------------------------------------------------------------------- * Function: leave * @@ -224,134 +221,138 @@ leave(int ret) static int convert(hid_t fid, const char *dname) { - hid_t dcpl = H5I_INVALID_HID; - hid_t did = H5I_INVALID_HID; - H5D_layout_t layout_type; + hid_t dcpl = H5I_INVALID_HID; + hid_t did = H5I_INVALID_HID; + H5D_layout_t layout_type; H5D_chunk_index_t idx_type; /* Open the dataset */ - if((did = H5Dopen2(fid, dname, H5P_DEFAULT)) < 0) { + if ((did = H5Dopen2(fid, dname, H5P_DEFAULT)) < 0) { error_msg("unable to open dataset \"%s\"\n", dname); h5tools_setstatus(EXIT_FAILURE); goto error; } - else if(verbose_g) + else if (verbose_g) HDfprintf(stdout, "Open the dataset\n"); /* Get the dataset's creation property list */ - if((dcpl = H5Dget_create_plist(did)) < 0) { + if ((dcpl = H5Dget_create_plist(did)) < 0) { error_msg("unable to get the dataset creation property list\n"); h5tools_setstatus(EXIT_FAILURE); goto error; } /* Get the dataset's layout */ - if((layout_type = H5Pget_layout(dcpl)) < 0) { + if ((layout_type = H5Pget_layout(dcpl)) < 0) { error_msg("unable to get the dataset layout type\n"); h5tools_setstatus(EXIT_FAILURE); goto error; } - else if(verbose_g) + else if (verbose_g) HDfprintf(stdout, "Retrieve the dataset's layout\n"); - switch(layout_type) { - case H5D_CHUNKED: - if(verbose_g) - HDfprintf(stdout, "Dataset is a chunked dataset\n"); - - /* Get the dataset's chunk indexing type */ - if(H5Dget_chunk_index_type(did, &idx_type) < 0) { - error_msg("unable to get the chunk indexing type for \"%s\"\n", dname); - h5tools_setstatus(EXIT_FAILURE); - goto error; - } - else if(verbose_g) - HDfprintf(stdout, "Retrieve the dataset's chunk indexing type\n"); + switch (layout_type) { + case H5D_CHUNKED: + if (verbose_g) + HDfprintf(stdout, "Dataset is a chunked dataset\n"); - if(idx_type == H5D_CHUNK_IDX_BTREE) { - if(verbose_g) - HDfprintf(stdout, "Dataset's chunk indexing type is already version 1 B-tree: no further action\n"); - h5tools_setstatus(EXIT_SUCCESS); + /* Get the dataset's chunk indexing type */ + if (H5Dget_chunk_index_type(did, &idx_type) < 0) { + error_msg("unable to get the chunk indexing type for \"%s\"\n", dname); + h5tools_setstatus(EXIT_FAILURE); + goto error; + } + else if (verbose_g) + HDfprintf(stdout, "Retrieve the dataset's chunk indexing type\n"); + + if (idx_type == H5D_CHUNK_IDX_BTREE) { + if (verbose_g) + HDfprintf( + stdout, + "Dataset's chunk indexing type is already version 1 B-tree: no further action\n"); + h5tools_setstatus(EXIT_SUCCESS); + goto done; + } + else if (verbose_g) + HDfprintf(stdout, "Dataset's chunk indexing type is not version 1 B-tree\n"); + + break; + + case H5D_CONTIGUOUS: + if (verbose_g) + HDfprintf(stdout, "Dataset is a contiguous dataset: downgrade layout version as needed\n"); + break; + + case H5D_COMPACT: + if (verbose_g) + HDfprintf(stdout, "Dataset is a compact dataset: downgrade layout version as needed\n"); + break; + + case H5D_VIRTUAL: + if (verbose_g) + HDfprintf(stdout, "No further action for virtual dataset\n"); goto done; - } - else if (verbose_g) - HDfprintf(stdout, "Dataset's chunk indexing type is not version 1 B-tree\n"); - - break; - case H5D_CONTIGUOUS: - if(verbose_g) - HDfprintf(stdout, "Dataset is a contiguous dataset: downgrade layout version as needed\n"); - break; - - case H5D_COMPACT: - if(verbose_g) - HDfprintf(stdout, "Dataset is a compact dataset: downgrade layout version as needed\n"); - break; - - case H5D_VIRTUAL: - if(verbose_g) - HDfprintf(stdout, "No further action for virtual dataset\n"); - goto done; - - case H5D_NLAYOUTS: - case H5D_LAYOUT_ERROR: - default: - error_msg("unknown layout type for \"%s\"\n", dname); - h5tools_setstatus(EXIT_FAILURE); - goto error; + case H5D_NLAYOUTS: + case H5D_LAYOUT_ERROR: + default: + error_msg("unknown layout type for \"%s\"\n", dname); + h5tools_setstatus(EXIT_FAILURE); + goto error; } /* end switch */ /* No further action if it is a noop */ - if(noop_g) { - if(verbose_g) + if (noop_g) { + if (verbose_g) HDfprintf(stdout, "Not converting the dataset\n"); h5tools_setstatus(EXIT_SUCCESS); goto done; } - if(verbose_g) + if (verbose_g) HDfprintf(stdout, "Converting the dataset...\n"); /* Downgrade the dataset */ - if(H5Dformat_convert(did) < 0) { + if (H5Dformat_convert(did) < 0) { error_msg("unable to downgrade dataset \"%s\"\n", dname); h5tools_setstatus(EXIT_FAILURE); goto error; } - else if(verbose_g) + else if (verbose_g) HDfprintf(stdout, "Done\n"); done: /* Close the dataset */ - if(H5Dclose(did) < 0) { + if (H5Dclose(did) < 0) { error_msg("unable to close dataset \"%s\"\n", dname); h5tools_setstatus(EXIT_FAILURE); goto error; } - else if(verbose_g) + else if (verbose_g) HDfprintf(stdout, "Close the dataset\n"); /* Close the dataset creation property list */ - if(H5Pclose(dcpl) < 0) { + if (H5Pclose(dcpl) < 0) { error_msg("unable to close dataset creation property list\n"); h5tools_setstatus(EXIT_FAILURE); goto error; } - else if(verbose_g) + else if (verbose_g) HDprintf("Close the dataset creation property list\n"); return 0; error: - if(verbose_g) + if (verbose_g) HDfprintf(stdout, "Error encountered\n"); - H5E_BEGIN_TRY { + H5E_BEGIN_TRY + { H5Pclose(dcpl); H5Dclose(did); - } H5E_END_TRY; + } + H5E_END_TRY; return -1; } /* convert() */ @@ -372,14 +373,14 @@ convert_dsets_cb(const char *path, const H5O_info2_t *oi, const char *already_vi hid_t fid = *(hid_t *)_fid; /* If the object has already been seen then just return */ - if(NULL == already_visited) { - if(oi->type == H5O_TYPE_DATASET) { - if(verbose_g) + if (NULL == already_visited) { + if (oi->type == H5O_TYPE_DATASET) { + if (verbose_g) HDfprintf(stdout, "Going to process dataset:%s...\n", path); - if(convert(fid, path) < 0) + if (convert(fid, path) < 0) goto error; } /* end if */ - } /* end if */ + } /* end if */ return 0; @@ -387,7 +388,6 @@ error: return -1; } /* end convert_dsets_cb() */ - /*------------------------------------------------------------------------- * Function: main * @@ -411,41 +411,41 @@ main(int argc, const char *argv[]) h5tools_init(); /* Parse command line options */ - if(parse_command_line(argc, argv) < 0) + if (parse_command_line(argc, argv) < 0) goto done; - else if(verbose_g) + else if (verbose_g) HDfprintf(stdout, "Process command line options\n"); - if(noop_g && verbose_g) + if (noop_g && verbose_g) HDfprintf(stdout, "It is noop...\n"); /* enable error reporting if command line option */ h5tools_error_report(); /* Open the HDF5 file */ - if((fid = h5tools_fopen(fname_g, H5F_ACC_RDWR, H5P_DEFAULT, FALSE, NULL, 0)) < 0) { + if ((fid = h5tools_fopen(fname_g, H5F_ACC_RDWR, H5P_DEFAULT, FALSE, NULL, 0)) < 0) { error_msg("unable to open file \"%s\"\n", fname_g); h5tools_setstatus(EXIT_FAILURE); goto done; } - else if(verbose_g) + else if (verbose_g) HDfprintf(stdout, "Open the file %s\n", fname_g); - if(dset_g) { /* Convert a specified dataset in the file */ - if(verbose_g) + if (dset_g) { /* Convert a specified dataset in the file */ + if (verbose_g) HDfprintf(stdout, "Going to process dataset: %s...\n", dname_g); - if(convert(fid, dname_g) < 0) + if (convert(fid, dname_g) < 0) goto done; } else { /* Convert all datasets in the file */ - if(verbose_g) + if (verbose_g) HDfprintf(stdout, "Processing all datasets in the file...\n"); - if(h5trav_visit(fid, "/", TRUE, TRUE, convert_dsets_cb, NULL, &fid, H5O_INFO_BASIC) < 0) + if (h5trav_visit(fid, "/", TRUE, TRUE, convert_dsets_cb, NULL, &fid, H5O_INFO_BASIC) < 0) goto done; } /* end else */ - if(verbose_g) { - if(noop_g) { + if (verbose_g) { + if (noop_g) { HDfprintf(stdout, "Not processing the file's superblock...\n"); h5tools_setstatus(EXIT_SUCCESS); goto done; @@ -454,7 +454,7 @@ main(int argc, const char *argv[]) } /* end if */ /* Process superblock */ - if(H5Fformat_convert(fid) < 0) { + if (H5Fformat_convert(fid) < 0) { error_msg("unable to convert file's superblock\"%s\"\n", fname_g); h5tools_setstatus(EXIT_FAILURE); goto done; @@ -462,22 +462,21 @@ main(int argc, const char *argv[]) done: /* Close the file */ - if(fid >= 0) { - if(H5Fclose(fid) < 0) { + if (fid >= 0) { + if (H5Fclose(fid) < 0) { error_msg("unable to close file \"%s\"\n", fname_g); h5tools_setstatus(EXIT_FAILURE); } - else if(verbose_g) { + else if (verbose_g) { HDfprintf(stdout, "Close the file\n"); } - } /* end if */ + } /* end if */ - if(fname_g) + if (fname_g) HDfree(fname_g); - if(dname_g) + if (dname_g) HDfree(dname_g); leave(h5tools_getstatus()); } /* end main() */ - |