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Diffstat (limited to 'tools/src/h5ls/h5ls.c')
-rw-r--r--tools/src/h5ls/h5ls.c337
1 files changed, 122 insertions, 215 deletions
diff --git a/tools/src/h5ls/h5ls.c b/tools/src/h5ls/h5ls.c
index f3f9ede..f82827c 100644
--- a/tools/src/h5ls/h5ls.c
+++ b/tools/src/h5ls/h5ls.c
@@ -1333,10 +1333,10 @@ dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx
switch (ref_type) {
case H5R_OBJECT1:
H5TOOLS_DEBUG("ref_type is H5R_OBJECT1");
- if (H5Rget_obj_type3((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) {
+ if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) {
switch (obj_type) {
case H5O_TYPE_DATASET:
- if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
datactx.indent_level++;
h5tools_dump_dset(stream, info, &datactx, new_obj_id);
datactx.indent_level--;
@@ -1363,7 +1363,7 @@ dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx
break;
case H5R_DATASET_REGION1:
H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION1");
- if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
datactx.indent_level++;
h5tools_dump_dset(stream, info, &datactx, new_obj_id);
datactx.indent_level--;
@@ -1377,13 +1377,13 @@ dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx
break;
case H5R_OBJECT2:
H5TOOLS_DEBUG("ref_type is H5R_OBJECT2");
- if (H5Rget_obj_type3((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) {
+ if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) {
switch (obj_type) {
case H5O_TYPE_GROUP:
break;
case H5O_TYPE_DATASET:
- if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
datactx.indent_level++;
h5tools_dump_dset(stream, info, &datactx, new_obj_id);
datactx.indent_level--;
@@ -1416,10 +1416,10 @@ dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx
ncols = info->line_ncols;
/* if (new_obj_id < 0) - could mean that no reference was written do not throw failure */
- if((new_obj_id = H5Ropen_object((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) < 0)
H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 failed");
else {
- if((new_obj_sid = H5Ropen_region((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ if((new_obj_sid = H5Ropen_region(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
if (h5tools_is_zero(&ref_buf[i], H5Tget_size(H5T_STD_REF))) {
H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2");
@@ -1471,7 +1471,7 @@ dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx
break;
case H5R_ATTR:
H5TOOLS_DEBUG("ref_type is H5R_ATTR");
- if((new_obj_id = H5Ropen_attr((const H5R_ref_t *)&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
+ if((new_obj_id = H5Ropen_attr(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
h5tools_dump_region_attribute(new_obj_id, stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
if(H5Aclose(new_obj_id) < 0)
H5TOOLS_INFO("H5Aclose H5R_ATTR failed");
@@ -2334,13 +2334,13 @@ list_obj(const char *name, const H5O_info2_t *oinfo, const char *first_seen, voi
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
} /* end if */
else {
- hid_t obj = H5I_INVALID_HID; /* ID of object opened */
+ hid_t obj_id = H5I_INVALID_HID; /* ID of object opened */
/* Open the object. Not all objects can be opened. If this is the case
* then return right away.
*/
H5TOOLS_DEBUG("Open object name=%s", name);
- if (obj_type >= 0 && (obj = H5Oopen(iter->fid, name, H5P_DEFAULT)) < 0) {
+ if (obj_type >= 0 && (obj_id = H5Oopen(iter->fid, name, H5P_DEFAULT)) < 0) {
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, " *ERROR*\n");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
@@ -2350,7 +2350,7 @@ list_obj(const char *name, const H5O_info2_t *oinfo, const char *first_seen, voi
/* List the first line of information for the object. */
H5TOOLS_DEBUG("Object type:%d", obj_type);
if (obj_type >= 0 && dispatch_g[obj_type].list1)
- (dispatch_g[obj_type].list1)(obj);
+ (dispatch_g[obj_type].list1)(obj_id);
if (!iter->symlink_target || (verbose_g > 0)) {
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "\n");
@@ -2362,23 +2362,26 @@ list_obj(const char *name, const H5O_info2_t *oinfo, const char *first_seen, voi
if (verbose_g > 0) {
size_t buf_size = 0;
char* comment = NULL;
- char* obj_addr_str = NULL;
+ char* obj_tok_str = NULL;
ssize_t cmt_bufsize = -1;
+ void *obj = NULL;
+ hid_t connector_id = H5I_INVALID_HID;
+ hbool_t supported = FALSE;
/* Display attributes */
H5TOOLS_DEBUG("Display attributes");
if (obj_type >= 0)
- H5Aiterate2(obj, H5_INDEX_NAME, H5_ITER_INC, NULL, list_attr, NULL);
+ H5Aiterate2(obj_id, H5_INDEX_NAME, H5_ITER_INC, NULL, list_attr, NULL);
/* Object location & reference count */
- H5Otoken_to_str(obj, &oinfo->token, &obj_addr_str);
+ H5Otoken_to_str(obj_id, &oinfo->token, &obj_tok_str);
h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, " %-10s %lu:%s\n", "Location:", oinfo->fileno, obj_addr_str);
+ h5tools_str_append(&buffer, " %-10s %lu:%s\n", "Location:", oinfo->fileno, obj_tok_str);
h5tools_str_append(&buffer, " %-10s %u\n", "Links:", (unsigned)oinfo->rc);
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
- H5free_memory(obj_addr_str);
+ H5free_memory(obj_tok_str);
/* Modification time */
if (oinfo->mtime > 0) {
@@ -2397,36 +2400,45 @@ list_obj(const char *name, const H5O_info2_t *oinfo, const char *first_seen, voi
} /* end if */
} /* end if */
- /* Object comment */
- cmt_bufsize = H5Oget_comment(obj, comment, buf_size);
-
- /* if the actual length of the comment is longer than cmt_bufsize, then call
- * H5Oget_comment again with the correct value.
- * If the call to H5Oget_comment returned an error, skip this block */
- if (cmt_bufsize > 0) {
- comment = (char *)HDmalloc((size_t)cmt_bufsize + 1); /* new_size including null terminator */
- if (comment) {
- cmt_bufsize = H5Oget_comment(obj, comment, (size_t)cmt_bufsize);
- if (cmt_bufsize > 0) {
- comment[cmt_bufsize] = 0;
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, " %-10s \"", "Comment:");
- print_string(&buffer, comment, FALSE);
- h5tools_str_append(&buffer, "\"\n");
- h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
- } /* end if */
- HDfree(comment);
+ /* Only emit comments if the VOL connector supports that */
+ obj = H5VLobject(obj_id);
+ connector_id = H5VLget_connector_id(obj_id);
+ H5VLintrospect_opt_query(obj, connector_id, H5VL_SUBCLS_OBJECT, H5VL_NATIVE_OBJECT_GET_COMMENT, &supported);
+ H5VLclose(connector_id);
+
+ if (supported) {
+
+ /* Object comment */
+ cmt_bufsize = H5Oget_comment(obj_id, comment, buf_size);
+
+ /* if the actual length of the comment is longer than cmt_bufsize, then call
+ * H5Oget_comment again with the correct value.
+ */
+ if (cmt_bufsize > 0) {
+ comment = (char *)HDmalloc((size_t)cmt_bufsize + 1); /* new_size including null terminator */
+ if (comment) {
+ cmt_bufsize = H5Oget_comment(obj_id, comment, (size_t)cmt_bufsize);
+ if (cmt_bufsize > 0) {
+ comment[cmt_bufsize] = 0;
+ h5tools_str_reset(&buffer);
+ h5tools_str_append(&buffer, " %-10s \"", "Comment:");
+ print_string(&buffer, comment, FALSE);
+ h5tools_str_append(&buffer, "\"\n");
+ h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
+ } /* end if */
+ HDfree(comment);
+ }
}
}
} /* end if */
/* Detailed list for object */
if (obj_type >= 0 && dispatch_g[obj_type].list2)
- (dispatch_g[obj_type].list2)(obj, name);
+ (dispatch_g[obj_type].list2)(obj_id, name);
/* Close the object. */
if (obj_type >= 0)
- H5Oclose(obj);
+ H5Oclose(obj_id);
} /* end else */
done:
@@ -2833,41 +2845,41 @@ leave(int ret)
int
main(int argc, const char *argv[])
{
- hid_t file_id = H5I_INVALID_HID;
- char *fname = NULL, *oname = NULL, *x;
- const char *s = NULL;
- char *rest;
- int argno;
- static char root_name[] = "/";
- char drivername[50];
- const char *preferred_driver = NULL;
- int err_exit = 0;
- hid_t fapl_id = H5P_DEFAULT;
- H5E_auto2_t func;
- H5E_auto2_t tools_func;
- void *edata;
- void *tools_edata;
+ hid_t file_id = H5I_INVALID_HID;
+ char *fname = NULL, *oname = NULL, *x;
+ const char *s = NULL;
+ char *rest;
+ int argno;
+ static char root_name[] = "/";
+ char drivername[50];
+ const char *preferred_driver = NULL;
+ int err_exit = 0;
+ hid_t fapl_id = H5P_DEFAULT;
+ H5E_auto2_t func;
+ H5E_auto2_t tools_func;
+ void *edata;
+ void *tools_edata;
#ifdef H5_HAVE_ROS3_VFD
- /* default "anonymous" s3 configuration */
+ /* Default "anonymous" S3 configuration */
H5FD_ros3_fapl_t ros3_fa = {
- 1, /* fapl version */
- false, /* authenticate */
- "", /* aws region */
- "", /* access key id */
- "", /* secret access key */
+ 1, /* Structure Version */
+ false, /* Authenticate? */
+ "", /* AWS Region */
+ "", /* Access Key ID */
+ "", /* Secret Access Key */
};
-#endif /* H5_HVAE_ROS3_VFD */
+#endif /* H5_HAVE_ROS3_VFD */
#ifdef H5_HAVE_LIBHDFS
- /* "default" HDFS configuration */
+ /* "Default" HDFS configuration */
H5FD_hdfs_fapl_t hdfs_fa = {
- 1, /* fapl version */
- "localhost", /* namenode name */
- 0, /* namenode port */
- "", /* kerberos ticket cache */
- "", /* user name */
- 2048, /* stream buffer size */
+ 1, /* Structure Version */
+ "localhost", /* Namenode Name */
+ 0, /* Namenode Port */
+ "", /* Kerberos ticket cache */
+ "", /* User name */
+ 2048, /* Stream buffer size */
};
#endif /* H5_HAVE_LIBHDFS */
@@ -3005,18 +3017,9 @@ main(int argc, const char *argv[])
}
else if (!HDstrncmp(argv[argno], "--s3-cred=", (size_t)10)) {
-#ifndef H5_HAVE_ROS3_VFD
- HDfprintf(rawerrorstream, "Error: Read-Only S3 VFD is not enabled\n\n");
- usage();
- leave(EXIT_FAILURE);
-#else
- unsigned nelems = 0;
- char *start = NULL;
- char *s3cred_src = NULL;
- char **s3cred = NULL;
- char const *ccred[3];
- /* try to parse s3 credentials tuple
- */
+#ifdef H5_HAVE_ROS3_VFD
+ char const *start = NULL;
+
start = strchr(argv[argno], '=');
if (start == NULL) {
HDfprintf(rawerrorstream, "Error: Unable to parse null credentials tuple\n"
@@ -3025,124 +3028,38 @@ main(int argc, const char *argv[])
leave(EXIT_FAILURE);
}
start++;
- if (FAIL == parse_tuple((const char *)start, ',', &s3cred_src, &nelems, &s3cred)) {
- HDfprintf(rawerrorstream, "Error: Unable to parse S3 credentials\n\n");
- usage();
- leave(EXIT_FAILURE);
- }
- /* sanity-check tuple count
- */
- if (nelems != 3) {
- HDfprintf(rawerrorstream, "Error: Invalid S3 credentials\n\n");
- usage();
- leave(EXIT_FAILURE);
- }
- ccred[0] = (const char *)s3cred[0];
- ccred[1] = (const char *)s3cred[1];
- ccred[2] = (const char *)s3cred[2];
- if (0 == h5tools_populate_ros3_fapl(&ros3_fa, ccred)) {
- HDfprintf(rawerrorstream, "Error: Invalid S3 credentials\n\n");
+
+ if (h5tools_parse_ros3_fapl_tuple(start, ',', &ros3_fa) < 0) {
+ HDfprintf(rawerrorstream, "Error: failed to parse S3 VFD credential info\n\n");
usage();
leave(EXIT_FAILURE);
}
- HDfree(s3cred);
- HDfree(s3cred_src);
-#endif /* H5_HAVE_ROS3_VFD */
-
+#else
+ HDfprintf(rawerrorstream, "Error: Read-Only S3 VFD is not enabled\n\n");
+ usage();
+ leave(EXIT_FAILURE);
+#endif
}
else if (!HDstrncmp(argv[argno], "--hdfs-attrs=", (size_t)13)) {
-#ifndef H5_HAVE_LIBHDFS
- PRINTVALSTREAM(rawoutstream, "The HDFS VFD is not enabled.\n");
- leave(EXIT_FAILURE);
-#else
- /* Parse received configuration data and set fapl config struct */
-
- hbool_t _debug = FALSE;
- unsigned nelems = 0;
- char const *start = NULL;
- char *props_src = NULL;
- char **props = NULL;
- unsigned long k = 0;
-
- /* try to parse tuple
- */
- if (_debug) {
- HDfprintf(stderr, "configuring hdfs...\n");
- }
+#ifdef H5_HAVE_LIBHDFS
+ char const *start = NULL;
+
start = argv[argno]+13; /* should never segfault: worst case of */
if (*start != '(') { /* null-termintor after '='. */
-
- if (_debug) {
- HDfprintf(stderr, " no tuple.\n");
- }
- usage();
- leave(EXIT_FAILURE);
- }
- if (FAIL == parse_tuple((const char *)start, ',', &props_src, &nelems, &props)) {
- HDfprintf(stderr, " unable to parse tuple.\n");
usage();
leave(EXIT_FAILURE);
}
- /* sanity-check tuple count
- */
- if (nelems != 5) {
- HDfprintf(stderr, " expected 5-ple, got `%d`\n", nelems);
+ if (h5tools_parse_hdfs_fapl_tuple(start, ',', &hdfs_fa) < 0) {
+ HDfprintf(rawerrorstream, "Error: failed to parse HDFS VFD configuration info\n\n");
usage();
leave(EXIT_FAILURE);
}
- if (_debug) {
- HDfprintf(stderr, " got hdfs-attrs tuple: `(%s,%s,%s,%s,%s)`\n", props[0], props[1], props[2], props[3], props[4]);
- }
-
- /* Populate fapl configuration structure with given properties.
- * WARNING: No error-checking is done on length of input strings...
- * Silent overflow is possible, albeit unlikely.
- */
- if (HDstrncmp(props[0], "", 1)) {
- if (_debug) {
- HDfprintf(stderr, " setting namenode name: %s\n", props[0]);
- }
- HDstrncpy(hdfs_fa.namenode_name, (const char *)props[0], HDstrlen(props[0]));
- }
- if (HDstrncmp(props[1], "", 1)) {
- k = strtoul((const char *)props[1], NULL, 0);
- if (errno == ERANGE) {
- HDfprintf(stderr, " supposed port number wasn't.\n");
- leave(EXIT_FAILURE);
- }
- if (_debug) {
- HDfprintf(stderr, " setting namenode port: %lu\n", k);
- }
- hdfs_fa.namenode_port = (int32_t)k;
- }
- if (HDstrncmp(props[2], "", 1)) {
- if (_debug) {
- HDfprintf(stderr, " setting kerb cache path: %s\n", props[2]);
- }
- HDstrncpy(hdfs_fa.kerberos_ticket_cache, (const char *)props[2], HDstrlen(props[2]));
- }
- if (HDstrncmp(props[3], "", 1)) {
- if (_debug) {
- HDfprintf(stderr, " setting username: %s\n", props[3]);
- }
- HDstrncpy(hdfs_fa.user_name, (const char *)props[3], HDstrlen(props[3]));
- }
- if (HDstrncmp(props[4], "", 1)) {
- k = HDstrtoul((const char *)props[4], NULL, 0);
- if (errno == ERANGE) {
- HDfprintf(stderr, " supposed buffersize number wasn't.\n");
- leave(EXIT_FAILURE);
- }
- if (_debug) {
- HDfprintf(stderr, " setting stream buffer size: %lu\n", k);
- }
- hdfs_fa.stream_buffer_size = (int32_t)k;
- }
- HDfree(props);
- HDfree(props_src);
-#endif /* H5_HAVE_LIBHDFS */
-
+#else
+ HDfprintf(rawerrorstream, "Error: The HDFS VFD is not enabled\n\n");
+ usage();
+ leave(EXIT_FAILURE);
+#endif
}
else if('-'!=argv[argno][1]) {
/* Single-letter switches */
@@ -3236,41 +3153,35 @@ main(int argc, const char *argv[])
}
if (preferred_driver) {
- void *conf_fa = NULL;
+ h5tools_fapl_info_t fapl_info;
- if (!HDstrcmp(preferred_driver, "ros3")) {
-#ifndef H5_HAVE_ROS3_VFD
- HDfprintf(rawerrorstream, "Error: Read-Only S3 VFD not enabled.\n\n");
- usage();
- leave(EXIT_FAILURE);
-#else
- conf_fa = (void *)&ros3_fa;
-#endif /* H5_HAVE_ROS3_VFD */
+ /* Currently, only retrieval of VFDs is supported. */
+ fapl_info.type = VFD_BY_NAME;
+ fapl_info.info = NULL;
+ fapl_info.u.name = preferred_driver;
- }
- else if (!HDstrcmp(preferred_driver, "hdfs")) {
-#ifndef H5_HAVE_LIBHDFS
- PRINTVALSTREAM(rawoutstream, "The HDFS VFD is not enabled.\n");
+ if (!HDstrcmp(preferred_driver, drivernames[ROS3_VFD_IDX])) {
+#ifdef H5_HAVE_ROS3_VFD
+ fapl_info.info = (void *)&ros3_fa;
+#else
+ HDfprintf(rawerrorstream, "Error: Read-Only S3 VFD is not enabled\n\n");
leave(EXIT_FAILURE);
+#endif
+ }
+ else if (!HDstrcmp(preferred_driver, drivernames[HDFS_VFD_IDX])) {
+#ifdef H5_HAVE_LIBHDFS
+ fapl_info.info = (void *)&hdfs_fa;
#else
- conf_fa = (void *)&hdfs_fa;
-#endif /* H5_HAVE_LIBHDFS */
+ HDfprintf(rawerrorstream, "Error: The HDFS VFD is not enabled\n\n");
+ leave(EXIT_FAILURE);
+#endif
}
- if (conf_fa != NULL) {
- HDassert(fapl_id == H5P_DEFAULT);
- fapl_id = H5Pcreate(H5P_FILE_ACCESS);
- if (fapl_id < 0) {
- HDfprintf(rawerrorstream, "Error: Unable to create fapl entry\n\n");
- leave(EXIT_FAILURE);
- }
- if (0 == h5tools_set_configured_fapl(fapl_id, preferred_driver, conf_fa)) {
- HDfprintf(rawerrorstream, "Error: Unable to set fapl\n\n");
- usage();
- leave(EXIT_FAILURE);
- }
+ if ((fapl_id = h5tools_get_fapl(H5P_DEFAULT, &fapl_info)) < 0) {
+ HDfprintf(rawerrorstream, "Error: Unable to create FAPL for file access\n\n");
+ leave(EXIT_FAILURE);
}
- } /* preferred_driver defined */
+ }
if (enable_error_stack > 0) {
H5Eset_auto2(H5E_DEFAULT, func, edata);
@@ -3301,12 +3212,8 @@ main(int argc, const char *argv[])
file_id = H5I_INVALID_HID;
while (fname && *fname) {
- if (fapl_id != H5P_DEFAULT) {
- file_id = H5Fopen(fname, H5F_ACC_RDONLY, fapl_id);
- }
- else {
- file_id = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, preferred_driver, drivername, sizeof drivername);
- }
+ file_id = h5tools_fopen(fname, H5F_ACC_RDONLY, fapl_id,
+ (fapl_id == H5P_DEFAULT) ? FALSE : TRUE, drivername, sizeof drivername);
if (file_id >= 0) {
if (verbose_g)
generated by cgit v0.12 at 2024-07-17 09:29:03 (GMT)