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-rw-r--r--tools/src/h5ls/h5ls.c275
1 files changed, 13 insertions, 262 deletions
diff --git a/tools/src/h5ls/h5ls.c b/tools/src/h5ls/h5ls.c
index 08a561e..1b294da 100644
--- a/tools/src/h5ls/h5ls.c
+++ b/tools/src/h5ls/h5ls.c
@@ -1298,230 +1298,6 @@ print_type(h5tools_str_t *buffer, hid_t type, int ind)
h5tools_str_append(buffer,"%lu-byte class-%u unknown", (unsigned long)H5Tget_size(type), (unsigned)data_class);
}
-/*
- *
- */
-static void
-dump_reference(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t container, H5R_ref_t *ref_buf, int ndims)
-{
- hid_t new_obj_id = H5I_INVALID_HID;
- hid_t new_obj_sid = H5I_INVALID_HID;
- hsize_t elmt_counter = 0; /*counts the # elements printed. */
- size_t ncols = 80; /* available output width */
- int i;
- hsize_t curr_pos = 0; /* total data element position */
- h5tools_str_t buffer; /* string into which to render */
- h5tools_context_t datactx; /* print context */
-
- H5TOOLS_START_DEBUG("");
-
- datactx = *ctx; /* print context */
- /* Assume entire data space to be printed */
- if (datactx.ndims > 0)
- for (i = 0; (unsigned)i < datactx.ndims; i++)
- datactx.p_min_idx[i] = 0;
- datactx.need_prefix = TRUE;
-
- HDmemset(&buffer, 0, sizeof(h5tools_str_t));
- for(i = 0; i < ndims; i++, datactx.cur_elmt++, elmt_counter++) {
- H5O_type_t obj_type = -1; /* Object type */
- H5R_type_t ref_type; /* Reference type */
-
- H5TOOLS_DEBUG("reference loop:%d with curr_pos=%ld", i, curr_pos);
-
- datactx.need_prefix = TRUE;
- h5tools_str_reset(&buffer);
- H5TOOLS_DEBUG("reference loop - h5tools_str_sprint with H5T_STD_REF:%d", i);
- h5tools_str_sprint(&buffer, info, container, H5T_STD_REF, &ref_buf[i], &datactx);
- h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)i, (hsize_t)ndims);
-
- ref_type = H5Rget_type((const H5R_ref_t *)&ref_buf[i]);
- switch (ref_type) {
- case H5R_OBJECT1:
- H5TOOLS_DEBUG("ref_type is H5R_OBJECT1");
- if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) {
- switch (obj_type) {
- case H5O_TYPE_DATASET:
- if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- datactx.indent_level++;
- h5tools_dump_dset(stream, info, &datactx, new_obj_id);
- datactx.indent_level--;
- if(H5Dclose(new_obj_id) < 0)
- H5TOOLS_INFO("H5Dclose H5R_OBJECT1:H5O_TYPE_DATASET failed");
- if(H5Rdestroy(&ref_buf[i]) < 0)
- H5TOOLS_INFO("H5Rdestroy H5R_OBJECT1:H5O_TYPE_DATASET failed");
- }
- else
- H5TOOLS_INFO("H5Ropen_object H5R_OBJECT1:H5O_TYPE_DATASET failed");
- break;
-
- case H5O_TYPE_GROUP:
- case H5O_TYPE_NAMED_DATATYPE:
- case H5O_TYPE_MAP:
- case H5O_TYPE_UNKNOWN:
- case H5O_TYPE_NTYPES:
- default:
- break;
- } /* end switch */
- }
- else
- H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT1 failed");
- break;
- case H5R_DATASET_REGION1:
- H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION1");
- if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- datactx.indent_level++;
- h5tools_dump_dset(stream, info, &datactx, new_obj_id);
- datactx.indent_level--;
- if(H5Dclose(new_obj_id) < 0)
- H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION1 failed");
- if(H5Rdestroy(&ref_buf[i]) < 0)
- H5TOOLS_INFO("H5Rdestroy H5R_DATASET_REGION1 failed");
- }
- else
- H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION1 failed");
- break;
- case H5R_OBJECT2:
- H5TOOLS_DEBUG("ref_type is H5R_OBJECT2");
- if (H5Rget_obj_type3(&ref_buf[i], H5P_DEFAULT, &obj_type) >= 0) {
- switch (obj_type) {
- case H5O_TYPE_GROUP:
- break;
-
- case H5O_TYPE_DATASET:
- if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- datactx.indent_level++;
- h5tools_dump_dset(stream, info, &datactx, new_obj_id);
- datactx.indent_level--;
- if(H5Oclose(new_obj_id) < 0)
- H5TOOLS_INFO("H5Oclose H5R_OBJECT2 failed");
- if(H5Rdestroy(&ref_buf[i]) < 0)
- H5TOOLS_INFO("H5Rdestroy H5R_OBJECT2 failed");
- }
- else
- H5TOOLS_INFO("H5Ropen_object H5R_OBJECT2 failed");
- break;
-
- case H5O_TYPE_NAMED_DATATYPE:
- break;
-
- case H5O_TYPE_MAP:
- case H5O_TYPE_UNKNOWN:
- case H5O_TYPE_NTYPES:
- default:
- break;
- } /* end switch */
- }
- else
- H5TOOLS_INFO("H5Rget_obj_type3 H5R_OBJECT2 failed");
- break;
- case H5R_DATASET_REGION2:
- H5TOOLS_DEBUG("ref_type is H5R_DATASET_REGION2");
-
- if (info->line_ncols > 0)
- ncols = info->line_ncols;
-
- /* if (new_obj_id < 0) - could mean that no reference was written do not throw failure */
- if((new_obj_id = H5Ropen_object(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) < 0)
- H5TOOLS_INFO("H5Ropen_object H5R_DATASET_REGION2 failed");
- else {
- if((new_obj_sid = H5Ropen_region(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- if (h5tools_is_zero(&ref_buf[i], H5Tget_size(H5T_STD_REF))) {
- H5TOOLS_DEBUG("NULL H5R_DATASET_REGION2");
-
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, " {");
- h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
- datactx.need_prefix = TRUE;
- datactx.indent_level++;
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, "NULL");
- h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
- datactx.indent_level--;
- datactx.need_prefix = TRUE;
-
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, "}");
- h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
- }
- else {
- H5S_sel_type region_type;
-
- region_type = H5Sget_select_type(new_obj_sid);
- if(region_type == H5S_SEL_POINTS) {
- /* Print point information */
- H5TOOLS_DEBUG("H5S_SEL_POINTS H5R_DATASET_REGION2");
- h5tools_dump_region_data_points(new_obj_sid, new_obj_id, stream, info, &datactx,
- &buffer, &curr_pos, ncols, (hsize_t)i, elmt_counter);
- }
- else if(region_type == H5S_SEL_HYPERSLABS) {
- /* Print block information */
- H5TOOLS_DEBUG("H5S_SEL_HYPERSLABS H5R_DATASET_REGION2");
- h5tools_dump_region_data_blocks(new_obj_sid, new_obj_id, stream, info, &datactx,
- &buffer, &curr_pos, ncols, (hsize_t)i, elmt_counter);
- }
- else
- H5TOOLS_INFO("invalid region type");
- } /* end else to if (h5tools_is_zero(... */
- if(H5Sclose(new_obj_sid) < 0)
- H5TOOLS_INFO("H5Sclose H5R_DATASET_REGION2 failed");
- }
- else
- H5TOOLS_INFO("H5Ropen_region H5R_DATASET_REGION2 failed");
- if(H5Dclose(new_obj_id) < 0)
- H5TOOLS_INFO("H5Dclose H5R_DATASET_REGION2 failed");
- if(H5Rdestroy(&ref_buf[i]) < 0)
- H5TOOLS_INFO("H5Rdestroy H5R_DATASET_REGION2 failed");
- }
- break;
- case H5R_ATTR:
- H5TOOLS_DEBUG("ref_type is H5R_ATTR");
- if((new_obj_id = H5Ropen_attr(&ref_buf[i], H5P_DEFAULT, H5P_DEFAULT)) >= 0) {
- h5tools_dump_region_attribute(new_obj_id, stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
- if(H5Aclose(new_obj_id) < 0)
- H5TOOLS_INFO("H5Aclose H5R_ATTR failed");
- if(H5Rdestroy(&ref_buf[i]) < 0)
- H5TOOLS_INFO("H5Rdestroy H5R_ATTR failed");
- }
- else {
- H5TOOLS_DEBUG("NULL H5R_ATTR");
-
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, " {");
- h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
- datactx.need_prefix = TRUE;
- datactx.indent_level++;
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, "NULL");
- h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
- datactx.indent_level--;
- datactx.need_prefix = TRUE;
-
- h5tools_str_reset(&buffer);
- h5tools_str_append(&buffer, "}");
- h5tools_render_element(stream, info, &datactx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0);
-
- H5TOOLS_INFO("H5Ropen_attr H5R_ATTR failed");
- }
- break;
- case H5R_BADTYPE:
- case H5R_MAXTYPE:
- default:
- break;
- } /* end switch */
-
- H5TOOLS_DEBUG("finished reference loop:%d",i);
- } /* end for(i = 0; i < ndims; i++, ctx->cur_elmt++, elmt_counter++) */
-
- h5tools_str_close(&buffer);
-
- PRINTVALSTREAM(stream, "\n");
-
- H5TOOLS_ENDDEBUG("");
-}
-
/*-------------------------------------------------------------------------
* Function: dump_dataset_values
*
@@ -1537,7 +1313,6 @@ dump_dataset_values(hid_t dset)
hid_t space = H5I_INVALID_HID;
hsize_t total_size[H5S_MAX_RANK];
int ndims;
- size_t i;
char string_prefix[64];
static char fmt_double[16];
static char fmt_float[16];
@@ -1653,13 +1428,9 @@ dump_dataset_values(hid_t dset)
H5TOOLS_DEBUG("ndims=%d - ctx.ndims=%d", ndims, ctx.ndims);
/* Assume entire data space to be printed */
- if (ctx.ndims > 0)
- for (i = 0; i < (size_t)ctx.ndims; i++)
- ctx.p_min_idx[i] = 0;
-
H5Sget_simple_extent_dims(space, total_size, NULL);
- if (ctx.ndims > 0)
- init_acc_pos(&ctx, total_size);
+ init_acc_pos(ctx.ndims, total_size, ctx.acc, ctx.pos, ctx.p_min_idx);
+
ctx.need_prefix = TRUE;
if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)ndims))) {
@@ -1669,7 +1440,9 @@ dump_dataset_values(hid_t dset)
H5TOOLS_INFO("H5Dread reference failed");
H5TOOLS_GOTO_DONE_NO_RET();
}
- dump_reference(rawoutstream, info, &ctx, dset, ref_buf, ndims);
+ h5tools_dump_reference(rawoutstream, info, &ctx, dset, ref_buf, ndims);
+
+ PRINTVALSTREAM(rawoutstream, "\n");
HDfree(ref_buf);
}
}
@@ -1707,7 +1480,6 @@ dump_attribute_values(hid_t attr)
hid_t space = H5I_INVALID_HID;
hsize_t total_size[H5S_MAX_RANK];
int ndims;
- size_t i;
char string_prefix[64];
static char fmt_double[16];
static char fmt_float[16];
@@ -1824,13 +1596,9 @@ dump_attribute_values(hid_t attr)
H5TOOLS_DEBUG("ndims=%d - ctx.ndims=%d", ndims, ctx.ndims);
/* Assume entire data space to be printed */
- if (ctx.ndims > 0)
- for (i = 0; i < (size_t)ctx.ndims; i++)
- ctx.p_min_idx[i] = 0;
-
H5Sget_simple_extent_dims(space, total_size, NULL);
- if (ctx.ndims > 0)
- init_acc_pos(&ctx, total_size);
+ init_acc_pos(ctx.ndims, total_size, ctx.acc, ctx.pos, ctx.p_min_idx);
+
ctx.need_prefix = TRUE;
if (NULL != (ref_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)ndims))) {
@@ -1841,7 +1609,9 @@ dump_attribute_values(hid_t attr)
H5TOOLS_GOTO_DONE_NO_RET();
}
ctx.indent_level++;
- dump_reference(rawoutstream, info, &ctx, attr, ref_buf, ndims);
+ h5tools_dump_reference(rawoutstream, info, &ctx, attr, ref_buf, ndims);
+
+ PRINTVALSTREAM(rawoutstream, "\n");
ctx.indent_level--;
HDfree(ref_buf);
}
@@ -2856,10 +2626,6 @@ main(int argc, const char *argv[])
const char *preferred_driver = NULL;
int err_exit = 0;
hid_t fapl_id = H5P_DEFAULT;
- H5E_auto2_t func;
- H5E_auto2_t tools_func;
- void *edata;
- void *tools_edata;
hbool_t custom_vol_fapl = FALSE;
h5tools_vol_info_t vol_info;
@@ -2889,17 +2655,9 @@ main(int argc, const char *argv[])
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
- /* Disable error reporting */
- H5Eget_auto2(H5E_DEFAULT, &func, &edata);
- H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
-
/* Initialize h5tools lib */
h5tools_init();
- /* Disable tools error reporting */
- H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
-
/* Initialize fapl info struct */
HDmemset(&vol_info, 0, sizeof(h5tools_vol_info_t));
@@ -3158,6 +2916,9 @@ main(int argc, const char *argv[])
}
} /* end for */
+ /* enable error reporting if command line option */
+ h5tools_error_report();
+
/* If no arguments remain then print a usage message (instead of doing
* absolutely nothing ;-) */
if (argno >= argc) {
@@ -3208,11 +2969,6 @@ main(int argc, const char *argv[])
}
}
- if (enable_error_stack > 0) {
- H5Eset_auto2(H5E_DEFAULT, func, edata);
- H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
- }
-
/* Each remaining argument is an hdf5 file followed by an optional slash
* and object name.
*
@@ -3271,7 +3027,6 @@ main(int argc, const char *argv[])
x = oname;
if (NULL == (oname = HDstrdup(oname))) {
HDfprintf(rawerrorstream, "memory allocation failed\n");
- H5Eset_auto2(H5E_DEFAULT, func, edata);
leave(EXIT_FAILURE);
}
*x = '\0';
@@ -3316,7 +3071,6 @@ main(int argc, const char *argv[])
h5tools_str_reset(&buffer);
print_obj_name(&buffer, &iter, oname, "**NOT FOUND**");
h5tools_render_element(rawoutstream, info, &ctx, &buffer, &curr_pos, (size_t)info->line_ncols, (hsize_t)0, (hsize_t)0);
- H5Eset_auto2(H5E_DEFAULT, func, edata);
leave(EXIT_FAILURE);
} /* end if */
} /* end if */
@@ -3326,7 +3080,6 @@ main(int argc, const char *argv[])
/* Open the object and display it's information */
if (li.type == H5L_TYPE_HARD) {
if (visit_obj(file_id, oname, &iter) < 0) {
- H5Eset_auto2(H5E_DEFAULT, func, edata);
leave(EXIT_FAILURE);
}
} /* end if(li.type == H5L_TYPE_HARD) */
@@ -3357,12 +3110,10 @@ main(int argc, const char *argv[])
if (fapl_id != H5P_DEFAULT) {
if (0 < H5Pclose(fapl_id)) {
HDfprintf(rawerrorstream, "Error: Unable to set close fapl entry\n\n");
- H5Eset_auto2(H5E_DEFAULT, func, edata);
leave(EXIT_FAILURE);
}
}
- H5Eset_auto2(H5E_DEFAULT, func, edata);
if (err_exit)
leave(EXIT_FAILURE);
else
generated by cgit v0.12 at 2024-11-06 18:06:12 (GMT)