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-rw-r--r--tools/src/h5repack/h5repack.c88
1 files changed, 59 insertions, 29 deletions
diff --git a/tools/src/h5repack/h5repack.c b/tools/src/h5repack/h5repack.c
index d75b1cf..d0aad79 100644
--- a/tools/src/h5repack/h5repack.c
+++ b/tools/src/h5repack/h5repack.c
@@ -221,6 +221,7 @@ h5repack_addlayout(const char *str, pack_opt_t *options)
* to free the stack.
*-------------------------------------------------------------------------
*/
+
hid_t
copy_named_datatype(hid_t type_in, hid_t fidout, named_dt_t **named_dt_head_p, trav_table_t *travt,
pack_opt_t *options)
@@ -354,24 +355,28 @@ done:
int
copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_t *travt, pack_opt_t *options)
{
- hid_t attr_id = H5I_INVALID_HID; /* attr ID */
- hid_t attr_out = H5I_INVALID_HID; /* attr ID */
- hid_t space_id = H5I_INVALID_HID; /* space ID */
- hid_t ftype_id = H5I_INVALID_HID; /* file type ID */
- hid_t wtype_id = H5I_INVALID_HID; /* read/write type ID */
- size_t msize; /* size of type */
- void * buf = NULL; /* data buffer */
- hsize_t nelmts; /* number of elements in dataset */
- int rank; /* rank of dataset */
- htri_t is_named; /* Whether the datatype is named */
- hsize_t dims[H5S_MAX_RANK]; /* dimensions of dataset */
- char name[255];
- H5O_info2_t oinfo; /* object info */
- int j;
- unsigned u;
- hbool_t is_ref = 0;
- H5T_class_t type_class = -1;
- int ret_value = 0;
+ hid_t attr_id = H5I_INVALID_HID; /* attr ID */
+ hid_t attr_out = H5I_INVALID_HID; /* attr ID */
+ hid_t space_id = H5I_INVALID_HID; /* space ID */
+ hid_t ftype_id = H5I_INVALID_HID; /* file type ID */
+ hid_t wtype_id = H5I_INVALID_HID; /* read/write type ID */
+ size_t msize; /* size of type */
+ void * buf = NULL; /* data buffer */
+ hsize_t nelmts; /* number of elements in dataset */
+ int rank; /* rank of dataset */
+ htri_t is_named; /* Whether the datatype is named */
+ hsize_t dims[H5S_MAX_RANK]; /* dimensions of dataset */
+ H5_timer_t timer; /* Timer for read/write operations */
+ H5_timevals_t times; /* Elapsed time for each operation */
+ static double read_time = 0;
+ static double write_time = 0;
+ char name[255];
+ H5O_info2_t oinfo; /* object info */
+ int j;
+ unsigned u;
+ hbool_t is_ref = 0;
+ H5T_class_t type_class = -1;
+ int ret_value = 0;
if (H5Oget_info3(loc_in, &oinfo, H5O_INFO_NUM_ATTRS) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Oget_info failed");
@@ -468,6 +473,9 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_
} /* end for each member */
} /* end if type_class is H5T_COMPOUND */
+ read_time = 0;
+ write_time = 0;
+
if (!is_ref) {
/*-----------------------------------------------------------------
* read to memory
@@ -478,8 +486,17 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_
if (buf == NULL) {
H5TOOLS_GOTO_ERROR((-1), "HDmalloc failed");
} /* end if */
+ if (options->verbose == 2) {
+ H5_timer_init(&timer);
+ H5_timer_start(&timer);
+ }
if (H5Aread(attr_id, wtype_id, buf) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Aread failed");
+ if (options->verbose == 2) {
+ H5_timer_stop(&timer);
+ H5_timer_get_times(timer, &times);
+ read_time += times.elapsed;
+ }
/*-----------------------------------------------------------------
* copy
@@ -488,8 +505,18 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_
if ((attr_out = H5Acreate2(loc_out, name, wtype_id, space_id, H5P_DEFAULT, H5P_DEFAULT)) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Acreate2 failed on ,%s>", name);
+
+ if (options->verbose == 2) {
+ H5_timer_init(&timer);
+ H5_timer_start(&timer);
+ }
if (H5Awrite(attr_out, wtype_id, buf) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Awrite failed");
+ if (options->verbose == 2) {
+ H5_timer_stop(&timer);
+ H5_timer_get_times(timer, &times);
+ write_time += times.elapsed;
+ }
/*close*/
if (H5Aclose(attr_out) < 0)
@@ -499,11 +526,14 @@ copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_
* be reclaimed */
if (TRUE == h5tools_detect_vlen(wtype_id))
H5Treclaim(wtype_id, space_id, H5P_DEFAULT, buf);
+
HDfree(buf);
buf = NULL;
} /*H5T_REFERENCE*/
- if (options->verbose)
+ if (options->verbose == 2)
+ HDprintf(FORMAT_OBJ_ATTR_TIME, "attr", read_time, write_time, name);
+ else
HDprintf(FORMAT_OBJ_ATTR, "attr", name);
/*---------------------------------------------------------------------
@@ -569,7 +599,7 @@ check_options(pack_opt_t *options)
* Objects to layout
*-------------------------------------------------------------------------
*/
- if (options->verbose && have_request(options)) {
+ if (options->verbose > 0 && have_request(options)) {
if (options->all_layout == 1) {
HDprintf("All objects to modify layout are...\n");
switch (options->layout_g) {
@@ -610,7 +640,7 @@ check_options(pack_opt_t *options)
char *name = options->op_tbl->objs[i].path;
if (options->op_tbl->objs[i].chunk.rank > 0) {
- if (options->verbose) {
+ if (options->verbose > 0) {
HDprintf(" <%s> with chunk size ", name);
for (k = 0; k < options->op_tbl->objs[i].chunk.rank; k++)
HDprintf("%d ", (int)options->op_tbl->objs[i].chunk.chunk_lengths[k]);
@@ -619,7 +649,7 @@ check_options(pack_opt_t *options)
has_ck = 1;
}
else if (options->op_tbl->objs[i].chunk.rank == -2) { /* TODO: replace 'magic number' */
- if (options->verbose)
+ if (options->verbose > 0)
HDprintf(" <%s> %s\n", name, "NONE (contiguous)");
has_ck = 1;
}
@@ -633,7 +663,7 @@ check_options(pack_opt_t *options)
*-------------------------------------------------------------------------
*/
- if (options->verbose && have_request(options)) {
+ if (options->verbose > 0 && have_request(options)) {
if (options->all_filter == 1) {
HDprintf("All objects to apply filter are...\n");
for (k = 0; k < options->n_filter_g; k++) {
@@ -670,7 +700,7 @@ check_options(pack_opt_t *options)
char * name = pack.path;
for (j = 0; j < pack.nfilters; j++) {
- if (options->verbose) {
+ if (options->verbose > 0) {
if (pack.filter[j].filtn >= 0) {
if (pack.filter[j].filtn > H5Z_FILTER_SCALEOFFSET) {
HDprintf(" <%s> with %s filter %d\n", name, get_sfilter(pack.filter[j].filtn),
@@ -708,7 +738,7 @@ check_options(pack_opt_t *options)
*------------------------------------------------------------------------
*/
if (options->ublock_filename != NULL && options->ublock_size == 0) {
- if (options->verbose) {
+ if (options->verbose > 0) {
HDprintf("Warning: user block size missing for file %s. Assigning a default size of 1024...\n",
options->ublock_filename);
options->ublock_size = 1024;
@@ -781,21 +811,21 @@ check_objects(const char *fname, pack_opt_t *options)
*-------------------------------------------------------------------------
*/
- if (options->verbose)
+ if (options->verbose > 0)
HDprintf("Opening file. Searching %zu objects to modify ...\n", travt->nobjs);
for (i = 0; i < options->op_tbl->nelems; i++) {
pack_info_t obj = options->op_tbl->objs[i];
char * name = obj.path;
- if (options->verbose)
+ if (options->verbose > 0)
HDprintf(" <%s>", name);
/* the input object names are present in the file and are valid */
if (h5trav_getindext(name, travt) < 0)
H5TOOLS_GOTO_ERROR((-1), "%s Could not find <%s> in file <%s>. Exiting...\n",
- (options->verbose ? "\n" : ""), name, fname);
- if (options->verbose)
+ (options->verbose > 0 ? "\n" : ""), name, fname);
+ if (options->verbose > 0)
HDprintf("...Found\n");
for (ifil = 0; ifil < obj.nfilters; ifil++) {
generated by cgit v0.12 at 2024-07-07 22:27:13 (GMT)