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-rw-r--r--tools/src/h5repack/h5repack.c89
1 files changed, 28 insertions, 61 deletions
diff --git a/tools/src/h5repack/h5repack.c b/tools/src/h5repack/h5repack.c
index 24f4e6c..0183cbf 100644
--- a/tools/src/h5repack/h5repack.c
+++ b/tools/src/h5repack/h5repack.c
@@ -220,11 +220,7 @@ h5repack_addlayout(const char *str, pack_opt_t *options)
*-------------------------------------------------------------------------
*/
hid_t
-copy_named_datatype(hid_t type_in,
- hid_t fidout,
- named_dt_t **named_dt_head_p,
- trav_table_t *travt,
- pack_opt_t *options)
+copy_named_datatype(hid_t type_in, hid_t fidout, named_dt_t **named_dt_head_p, trav_table_t *travt, pack_opt_t *options)
{
named_dt_t *dt = *named_dt_head_p; /* Stack pointer */
named_dt_t *dt_ret = NULL; /* Datatype to return */
@@ -248,8 +244,7 @@ copy_named_datatype(hid_t type_in,
if (travt->objs[i].type == H5TRAV_TYPE_NAMED_DATATYPE) {
/* Push onto the stack */
if (NULL == (dt = (named_dt_t *)HDmalloc(sizeof(named_dt_t))))
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "buffer allocation failed failed");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "buffer allocation failed failed");
dt->next = *named_dt_head_p;
*named_dt_head_p = dt;
@@ -289,8 +284,7 @@ copy_named_datatype(hid_t type_in,
else
dt_ret->id_out = H5Tcopy(type_in);
if (dt_ret->id_out < 0)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "H5Tget_native_type-H5Tcopy failed");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_native_type-H5Tcopy failed");
if (H5Tcommit_anon(fidout, dt_ret->id_out, H5P_DEFAULT, H5P_DEFAULT) < 0)
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tcommit_anon failed");
} /* end if named datatype not yet in output file */
@@ -347,12 +341,7 @@ done:
*-------------------------------------------------------------------------
*/
int
-copy_attr(
- hid_t loc_in,
- hid_t loc_out,
- named_dt_t **named_dt_head_p,
- trav_table_t *travt,
- pack_opt_t *options)
+copy_attr(hid_t loc_in, hid_t loc_out, named_dt_t **named_dt_head_p, trav_table_t *travt, pack_opt_t *options)
{
int ret_value = 0;
hid_t attr_id = -1; /* attr ID */
@@ -382,13 +371,13 @@ copy_attr(
*/
for (u = 0; u < (unsigned) oinfo.num_attrs; u++) {
/* open attribute */
- attr_id = H5Aopen_by_idx(loc_in, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t) u, H5P_DEFAULT, H5P_DEFAULT);
- if (attr_id < 0)
+ if ((attr_id = H5Aopen_by_idx(loc_in, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t) u, H5P_DEFAULT, H5P_DEFAULT)) < 0)
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aopen_by_idx failed");
if (H5Aget_name(attr_id, (size_t) 255, name) < 0)
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Pclose failed");
+ /* get the file datatype */
if ((ftype_id = H5Aget_type(attr_id)) < 0)
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Aget_type failed");
@@ -405,8 +394,7 @@ copy_attr(
/* Copy named dt */
if ((wtype_id = copy_named_datatype(ftype_id, fidout, named_dt_head_p, travt, options)) < 0) {
H5Fclose(fidout);
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "copy_named_datatype failed");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "copy_named_datatype failed");
}
if (H5Fclose(fidout) < 0)
@@ -425,8 +413,7 @@ copy_attr(
/* get dimensions */
if ((rank = H5Sget_simple_extent_dims(space_id, dims, NULL)) < 0)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "H5Sget_simple_extent_dims failed");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed");
nelmts = 1;
for (j = 0; j < rank; j++)
@@ -622,8 +609,7 @@ check_options(pack_opt_t *options)
} /* end for each object in options */
if (options->all_layout == 1 && has_ck)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "invalid chunking input: 'all' option is present with other objects");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid chunking input: 'all' option is present with other objects");
/*-------------------------------------------------------------------------
* Objects to filter
@@ -669,14 +655,10 @@ check_options(pack_opt_t *options)
if (options->verbose) {
if (pack.filter[j].filtn >= 0) {
if (pack.filter[j].filtn > H5Z_FILTER_SCALEOFFSET) {
- HDprintf(" <%s> with %s filter %d\n", name,
- get_sfilter(pack.filter[j].filtn),
- pack.filter[j].filtn);
+ HDprintf(" <%s> with %s filter %d\n", name, get_sfilter(pack.filter[j].filtn), pack.filter[j].filtn);
}
else {
- HDprintf(" <%s> with %s filter\n",
- name,
- get_sfilter(pack.filter[j].filtn));
+ HDprintf(" <%s> with %s filter\n", name, get_sfilter(pack.filter[j].filtn));
}
}
}
@@ -685,9 +667,7 @@ check_options(pack_opt_t *options)
} /* end for each object in options table */
if (options->all_filter == 1 && has_cp)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "invalid compression input: 'all' option is present with " \
- "other objects");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid compression input: 'all' option is present with other objects");
/*-------------------------------------------------------------------------
* Check options for the latest format
@@ -695,18 +675,14 @@ check_options(pack_opt_t *options)
*/
if (options->grp_compact < 0)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "invalid maximum number of links to store as header messages");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid maximum number of links to store as header messages");
if (options->grp_indexed < 0)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "invalid minimum number of links to store in indexed format");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid minimum number of links to store in the indexed format");
if (options->grp_indexed > options->grp_compact)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "minimum indexed size is greater than maximum compact size");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "minimum indexed size is greater than the maximum compact size");
for (i = 0; i < 8; i++)
if (options->msg_size[i] < 0)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "invalid shared message size");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "invalid shared message size");
/*------------------------------------------------------------------------
* Verify new user userblock options; file name must be present
@@ -720,8 +696,7 @@ check_options(pack_opt_t *options)
}
if (options->ublock_filename == NULL && options->ublock_size != 0)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "file name missing for user block", options->ublock_filename);
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "file name missing for user block", options->ublock_filename);
/*------------------------------------------------------------------------
* Verify alignment options; threshold is zero default but alignment not
@@ -729,8 +704,7 @@ check_options(pack_opt_t *options)
*/
if (options->alignment == 0 && options->threshold != 0)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "alignment for H5Pset_alignment missing");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "alignment for H5Pset_alignment missing");
done:
return ret_value;
@@ -765,8 +739,7 @@ check_objects(const char* fname, pack_opt_t *options)
*-------------------------------------------------------------------------
*/
if ((fid = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, 0)) < 0)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "h5tools_fopen failed <%s>: %s", fname, H5FOPENERROR);
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "h5tools_fopen failed <%s>: %s", fname, H5FOPENERROR);
/*-------------------------------------------------------------------------
* get the list of objects in the file
@@ -775,6 +748,7 @@ check_objects(const char* fname, pack_opt_t *options)
/* Initialize indexing options */
h5trav_set_index(sort_by, sort_order);
+ /* init table */
trav_table_init(&travt);
/* get the list of objects in the file */
@@ -798,8 +772,7 @@ check_objects(const char* fname, pack_opt_t *options)
/* the input object names are present in the file and are valid */
if (h5trav_getindext(name, travt) < 0)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "%s Could not find <%s> in file <%s>. Exiting...\n",
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "%s Could not find <%s> in file <%s>. Exiting...\n",
(options->verbose ? "\n" : ""), name, fname);
if (options->verbose)
HDprintf("...Found\n");
@@ -825,27 +798,21 @@ check_objects(const char* fname, pack_opt_t *options)
}
else {
if ((did = H5Dopen2(fid, name, H5P_DEFAULT)) < 0)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "H5Dopen2 failed");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dopen2 failed");
if ((sid = H5Dget_space(did)) < 0)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "H5Dget_space failed");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed");
if ((rank = H5Sget_simple_extent_ndims(sid)) < 0)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "H5Sget_simple_extent_ndims failed");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed");
HDmemset(dims, 0, sizeof dims);
if (H5Sget_simple_extent_dims(sid, dims, NULL) < 0)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "H5Sget_simple_extent_dims failed");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed");
for (j = 0; j < rank; j++)
csize *= dims[j];
if (H5Sclose(sid) < 0)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "H5Sclose failed");
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Sclose failed");
if (H5Dclose(did) < 0)
- HGOTO_ERROR(FAIL, H5E_tools_min_id_g,
- "H5Dclose failed");
- } /* end else (chunk rank is 0) */
+ HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dclose failed");
+ }
if (csize < ppb) {
HDprintf(" <warning: SZIP settings, chunk size is smaller than pixels per block>\n");
generated by cgit v0.12 at 2025-01-09 11:01:36 (GMT)