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diff --git a/tools/src/h5repack/h5repack_main.c b/tools/src/h5repack/h5repack_main.c
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+++ b/tools/src/h5repack/h5repack_main.c
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+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "h5tools.h"
+#include "h5tools_utils.h"
+#include "h5repack.h"
+
+/* Name of tool */
+#define PROGRAMNAME "h5repack"
+
+static int parse_command_line(int argc, const char **argv, pack_opt_t* options);
+static void leave(int ret) H5_ATTR_NORETURN;
+
+
+/* module-scoped variables */
+static int has_i_o = 0;
+const char *infile = NULL;
+const char *outfile = NULL;
+
+/*
+ * Command-line options: The user can specify short or long-named
+ * parameters.
+ */
+static const char *s_opts = "hVvf:l:m:e:nLc:d:s:u:b:M:t:a:i:o:S:T:E";
+static struct long_options l_opts[] = {
+ { "help", no_arg, 'h' },
+ { "version", no_arg, 'V' },
+ { "verbose", no_arg, 'v' },
+ { "filter", require_arg, 'f' },
+ { "layout", require_arg, 'l' },
+ { "minimum", require_arg, 'm' },
+ { "file", require_arg, 'e' },
+ { "native", no_arg, 'n' },
+ { "latest", no_arg, 'L' },
+ { "compact", require_arg, 'c' },
+ { "indexed", require_arg, 'd' },
+ { "ssize", require_arg, 's' },
+ { "ublock", require_arg, 'u' },
+ { "block", require_arg, 'b' },
+ { "metadata_block_size", require_arg, 'M' },
+ { "threshold", require_arg, 't' },
+ { "alignment", require_arg, 'a' },
+ { "infile", require_arg, 'i' }, /* -i for backward compability */
+ { "outfile", require_arg, 'o' }, /* -o for backward compability */
+ { "fs_strategy", require_arg, 'S' },
+ { "fs_threshold", require_arg, 'T' },
+ { "enable-error-stack", no_arg, 'E' },
+ { NULL, 0, '\0' }
+};
+
+/*-------------------------------------------------------------------------
+ * Function: usage
+ *
+ * Purpose: print usage
+ *
+ * Return: void
+ *
+ *-------------------------------------------------------------------------
+ */
+static void usage(const char *prog) {
+ FLUSHSTREAM(rawoutstream);
+ PRINTSTREAM(rawoutstream, "usage: %s [OPTIONS] file1 file2\n", prog);
+ PRINTVALSTREAM(rawoutstream, " file1 Input HDF5 File\n");
+ PRINTVALSTREAM(rawoutstream, " file2 Output HDF5 File\n");
+ PRINTVALSTREAM(rawoutstream, " OPTIONS\n");
+ PRINTVALSTREAM(rawoutstream, " -h, --help Print a usage message and exit\n");
+ PRINTVALSTREAM(rawoutstream, " -v, --verbose Verbose mode, print object information\n");
+ PRINTVALSTREAM(rawoutstream, " -V, --version Print version number and exit\n");
+ PRINTVALSTREAM(rawoutstream, " -n, --native Use a native HDF5 type when repacking\n");
+ PRINTVALSTREAM(rawoutstream, " -L, --latest Use latest version of file format\n");
+ PRINTVALSTREAM(rawoutstream, " -c L1, --compact=L1 Maximum number of links in header messages\n");
+ PRINTVALSTREAM(rawoutstream, " -d L2, --indexed=L2 Minimum number of links in the indexed format\n");
+ PRINTVALSTREAM(rawoutstream, " -s S[:F], --ssize=S[:F] Shared object header message minimum size\n");
+ PRINTVALSTREAM(rawoutstream, " -m M, --minimum=M Do not apply the filter to datasets smaller than M\n");
+ PRINTVALSTREAM(rawoutstream, " -e E, --file=E Name of file E with the -f and -l options\n");
+ PRINTVALSTREAM(rawoutstream, " -u U, --ublock=U Name of file U with user block data to be added\n");
+ PRINTVALSTREAM(rawoutstream, " -b B, --block=B Size of user block to be added\n");
+ PRINTVALSTREAM(rawoutstream, " -M A, --metadata_block_size=A Metadata block size for H5Pset_meta_block_size\n");
+ PRINTVALSTREAM(rawoutstream, " -t T, --threshold=T Threshold value for H5Pset_alignment\n");
+ PRINTVALSTREAM(rawoutstream, " -a A, --alignment=A Alignment value for H5Pset_alignment\n");
+ PRINTVALSTREAM(rawoutstream, " -f FILT, --filter=FILT Filter type\n");
+ PRINTVALSTREAM(rawoutstream, " -l LAYT, --layout=LAYT Layout type\n");
+ PRINTVALSTREAM(rawoutstream, " -S FS_STRGY, --fs_strategy=FS_STRGY File space management strategy\n");
+ PRINTVALSTREAM(rawoutstream, " -T FS_THRD, --fs_threshold=FS_THRD Free-space section threshold\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " M - is an integer greater than 1, size of dataset in bytes (default is 0) \n");
+ PRINTVALSTREAM(rawoutstream, " E - is a filename.\n");
+ PRINTVALSTREAM(rawoutstream, " S - is an integer\n");
+ PRINTVALSTREAM(rawoutstream, " U - is a filename.\n");
+ PRINTVALSTREAM(rawoutstream, " T - is an integer\n");
+ PRINTVALSTREAM(rawoutstream, " A - is an integer greater than zero\n");
+ PRINTVALSTREAM(rawoutstream, " B - is the user block size, any value that is 512 or greater and is\n");
+ PRINTVALSTREAM(rawoutstream, " a power of 2 (1024 default)\n");
+ PRINTVALSTREAM(rawoutstream, " F - is the shared object header message type, any of <dspace|dtype|fill|\n");
+ PRINTVALSTREAM(rawoutstream, " pline|attr>. If F is not specified, S applies to all messages\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " --enable-error-stack Prints messages from the HDF5 error stack as they\n");
+ PRINTVALSTREAM(rawoutstream, " occur.\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " FS_STRGY is the file space management strategy to use for the output file.\n");
+ PRINTVALSTREAM(rawoutstream, " It is a string as listed below:\n");
+ PRINTVALSTREAM(rawoutstream, " ALL_PERSIST - Use persistent free-space managers, aggregators and virtual file driver\n");
+ PRINTVALSTREAM(rawoutstream, " for file space allocation\n");
+ PRINTVALSTREAM(rawoutstream, " ALL - Use non-persistent free-space managers, aggregators and virtual file driver\n");
+ PRINTVALSTREAM(rawoutstream, " for file space allocation\n");
+ PRINTVALSTREAM(rawoutstream, " AGGR_VFD - Use aggregators and virtual file driver for file space allocation\n");
+ PRINTVALSTREAM(rawoutstream, " VFD - Use virtual file driver for file space allocation\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " FS_THRD is the free-space section threshold to use for the output file.\n");
+ PRINTVALSTREAM(rawoutstream, " It is the minimum size (in bytes) of free-space sections to be tracked\n");
+ PRINTVALSTREAM(rawoutstream, " by the the library's free-space managers.\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " FILT - is a string with the format:\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " <list of objects>:<name of filter>=<filter parameters>\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " <list of objects> is a comma separated list of object names, meaning apply\n");
+ PRINTVALSTREAM(rawoutstream, " compression only to those objects. If no names are specified, the filter\n");
+ PRINTVALSTREAM(rawoutstream, " is applied to all objects\n");
+ PRINTVALSTREAM(rawoutstream, " <name of filter> can be:\n");
+ PRINTVALSTREAM(rawoutstream, " GZIP, to apply the HDF5 GZIP filter (GZIP compression)\n");
+ PRINTVALSTREAM(rawoutstream, " SZIP, to apply the HDF5 SZIP filter (SZIP compression)\n");
+ PRINTVALSTREAM(rawoutstream, " SHUF, to apply the HDF5 shuffle filter\n");
+ PRINTVALSTREAM(rawoutstream, " FLET, to apply the HDF5 checksum filter\n");
+ PRINTVALSTREAM(rawoutstream, " NBIT, to apply the HDF5 NBIT filter (NBIT compression)\n");
+ PRINTVALSTREAM(rawoutstream, " SOFF, to apply the HDF5 Scale/Offset filter\n");
+ PRINTVALSTREAM(rawoutstream, " UD, to apply a user defined filter\n");
+ PRINTVALSTREAM(rawoutstream, " NONE, to remove all filters\n");
+ PRINTVALSTREAM(rawoutstream, " <filter parameters> is optional filter parameter information\n");
+ PRINTVALSTREAM(rawoutstream, " GZIP=<deflation level> from 1-9\n");
+ PRINTVALSTREAM(rawoutstream, " SZIP=<pixels per block,coding> pixels per block is a even number in\n");
+ PRINTVALSTREAM(rawoutstream, " 2-32 and coding method is either EC or NN\n");
+ PRINTVALSTREAM(rawoutstream, " SHUF (no parameter)\n");
+ PRINTVALSTREAM(rawoutstream, " FLET (no parameter)\n");
+ PRINTVALSTREAM(rawoutstream, " NBIT (no parameter)\n");
+ PRINTVALSTREAM(rawoutstream, " SOFF=<scale_factor,scale_type> scale_factor is an integer and scale_type\n");
+ PRINTVALSTREAM(rawoutstream, " is either IN or DS\n");
+ PRINTVALSTREAM(rawoutstream, " UD=<filter_number,cd_value_count,value_1[,value_2,...,value_N]>\n");
+ PRINTVALSTREAM(rawoutstream, " required values for filter_number,cd_value_count,value_1\n");
+ PRINTVALSTREAM(rawoutstream, " optional values for value_2 to value_N\n");
+ PRINTVALSTREAM(rawoutstream, " NONE (no parameter)\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " LAYT - is a string with the format:\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " <list of objects>:<layout type>=<layout parameters>\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " <list of objects> is a comma separated list of object names, meaning that\n");
+ PRINTVALSTREAM(rawoutstream, " layout information is supplied for those objects. If no names are\n");
+ PRINTVALSTREAM(rawoutstream, " specified, the layout type is applied to all objects\n");
+ PRINTVALSTREAM(rawoutstream, " <layout type> can be:\n");
+ PRINTVALSTREAM(rawoutstream, " CHUNK, to apply chunking layout\n");
+ PRINTVALSTREAM(rawoutstream, " COMPA, to apply compact layout\n");
+ PRINTVALSTREAM(rawoutstream, " CONTI, to apply contiguous layout\n");
+ PRINTVALSTREAM(rawoutstream, " <layout parameters> is optional layout information\n");
+ PRINTVALSTREAM(rawoutstream, " CHUNK=DIM[xDIM...xDIM], the chunk size of each dimension\n");
+ PRINTVALSTREAM(rawoutstream, " COMPA (no parameter)\n");
+ PRINTVALSTREAM(rawoutstream, " CONTI (no parameter)\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, "Examples of use:\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, "1) h5repack -v -f GZIP=1 file1 file2\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " GZIP compression with level 1 to all objects\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, "2) h5repack -v -f dset1:SZIP=8,NN file1 file2\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " SZIP compression with 8 pixels per block and NN coding method to object dset1\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, "3) h5repack -v -l dset1,dset2:CHUNK=20x10 -f dset3,dset4,dset5:NONE file1 file2\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " Chunked layout, with a layout size of 20x10, to objects dset1 and dset2\n");
+ PRINTVALSTREAM(rawoutstream, " and remove filters to objects dset3, dset4, dset5\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, "4) h5repack -L -c 10 -s 20:dtype file1 file2 \n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " Using latest file format with maximum compact group size of 10 and\n");
+ PRINTVALSTREAM(rawoutstream, " and minimum shared datatype size of 20\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, "5) h5repack -f SHUF -f GZIP=1 file1 file2 \n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " Add both filters SHUF and GZIP in this order to all datasets\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, "6) h5repack -f UD=307,1,9 file1 file2 \n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+ PRINTVALSTREAM(rawoutstream, " Add bzip2 filter to all datasets\n");
+ PRINTVALSTREAM(rawoutstream, "\n");
+}
+
+/*-------------------------------------------------------------------------
+ * Function: leave
+ *
+ * Purpose: Shutdown MPI & HDF5 and call exit()
+ *
+ * Return: Does not return
+ *
+ * Programmer: Quincey Koziol
+ * Saturday, 31. January 2004
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void leave(int ret) {
+ h5tools_close();
+
+ HDexit(ret);
+}
+
+/*-------------------------------------------------------------------------
+ * Function: read_info
+ *
+ * Purpose: read comp and chunk options from a file
+ *
+ * Return: void, exit on error
+ *
+ * Programmer: pvn@ncsa.uiuc.edu
+ *
+ * Date: September, 22, 2003
+ *
+ *-------------------------------------------------------------------------
+ */
+
+static
+int read_info(const char *filename, pack_opt_t *options) {
+
+ char stype[10];
+ char comp_info[1024];
+ FILE *fp = NULL;
+ char c;
+ int i, rc = 1;
+ int ret_value = EXIT_SUCCESS;
+
+ if ((fp = HDfopen(filename, "r")) == (FILE *) NULL) {
+ error_msg("cannot open options file %s\n", filename);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = EXIT_FAILURE;
+ goto done;
+ }
+
+ /* cycle until end of file reached */
+ while (1) {
+ rc = fscanf(fp, "%s", stype);
+ if (rc == -1)
+ break;
+
+ /*-------------------------------------------------------------------------
+ * filter
+ *-------------------------------------------------------------------------
+ */
+ if (HDstrcmp(stype,"-f") == 0) {
+ /* find begining of info */
+ i = 0;
+ c = '0';
+ while (c != ' ') {
+ if(fscanf(fp, "%c", &c) < 0 && HDferror(fp)) {
+ error_msg("fscanf error\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = EXIT_FAILURE;
+ goto done;
+ } /* end if */
+ if (HDfeof(fp))
+ break;
+ }
+ c = '0';
+ /* go until end */
+ while (c != ' ') {
+ if(fscanf(fp, "%c", &c) < 0 && HDferror(fp)) {
+ error_msg("fscanf error\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = EXIT_FAILURE;
+ goto done;
+ } /* end if */
+ comp_info[i] = c;
+ i++;
+ if (HDfeof(fp))
+ break;
+ if (c == 10 /*eol*/)
+ break;
+ }
+ comp_info[i - 1] = '\0'; /*cut the last " */
+
+ if (h5repack_addfilter(comp_info, options) == -1) {
+ error_msg("could not add compression option\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = EXIT_FAILURE;
+ goto done;
+ }
+ }
+ /*-------------------------------------------------------------------------
+ * layout
+ *-------------------------------------------------------------------------
+ */
+ else if (HDstrcmp(stype,"-l") == 0) {
+
+ /* find begining of info */
+ i = 0;
+ c = '0';
+ while (c != ' ') {
+ if(fscanf(fp, "%c", &c) < 0 && HDferror(fp)) {
+ error_msg("fscanf error\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = EXIT_FAILURE;
+ goto done;
+ } /* end if */
+ if (HDfeof(fp))
+ break;
+ }
+ c = '0';
+ /* go until end */
+ while (c != ' ') {
+ if(fscanf(fp, "%c", &c) < 0 && HDferror(fp)) {
+ error_msg("fscanf error\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = EXIT_FAILURE;
+ goto done;
+ } /* end if */
+ comp_info[i] = c;
+ i++;
+ if (HDfeof(fp))
+ break;
+ if (c == 10 /*eol*/)
+ break;
+ }
+ comp_info[i - 1] = '\0'; /*cut the last " */
+
+ if (h5repack_addlayout(comp_info, options) == -1) {
+ error_msg("could not add chunck option\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = EXIT_FAILURE;
+ goto done;
+ }
+ }
+ /*-------------------------------------------------------------------------
+ * not valid
+ *-------------------------------------------------------------------------
+ */
+ else {
+ error_msg("bad file format for %s", filename);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = EXIT_FAILURE;
+ goto done;
+ }
+ }
+
+done:
+ if (fp)
+ HDfclose(fp);
+
+ return ret_value;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: parse_command_line
+ *
+ * Purpose: parse command line input
+ *
+ *-------------------------------------------------------------------------
+ */
+
+static
+int parse_command_line(int argc, const char **argv, pack_opt_t* options) {
+
+ int opt;
+ int ret_value = 0;
+
+ /* parse command line options */
+ while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
+ switch ((char) opt) {
+
+ /* -i for backward compability */
+ case 'i':
+ infile = opt_arg;
+ has_i_o = 1;
+ break;
+
+ /* -o for backward compability */
+ case 'o':
+ outfile = opt_arg;
+ has_i_o = 1;
+ break;
+
+ case 'h':
+ usage(h5tools_getprogname());
+ h5tools_setstatus(EXIT_SUCCESS);
+ ret_value = -1;
+ goto done;
+
+ case 'V':
+ print_version(h5tools_getprogname());
+ h5tools_setstatus(EXIT_SUCCESS);
+ ret_value = -1;
+ goto done;
+
+ case 'v':
+ options->verbose = 1;
+ break;
+
+ case 'f':
+ /* parse the -f filter option */
+ if (h5repack_addfilter(opt_arg, options) < 0) {
+ error_msg("in parsing filter\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
+ goto done;
+ }
+ break;
+
+ case 'l':
+ /* parse the -l layout option */
+ if (h5repack_addlayout(opt_arg, options) < 0) {
+ error_msg("in parsing layout\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
+ goto done;
+ }
+ break;
+
+ case 'm':
+ options->min_comp = HDstrtoull(opt_arg , NULL, 0);
+ if ((int) options->min_comp <= 0) {
+ error_msg("invalid minimum compress size <%s>\n", opt_arg);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
+ goto done;
+ }
+ break;
+
+ case 'e':
+ ret_value = read_info(opt_arg, options);
+ if (ret_value < 0)
+ goto done;
+ break;
+
+ case 'n':
+ options->use_native = 1;
+ break;
+
+ case 'L':
+ options->latest = TRUE;
+ break;
+
+ case 'c':
+ options->grp_compact = HDatoi( opt_arg );
+ if (options->grp_compact > 0)
+ options->latest = TRUE; /* must use latest format */
+ break;
+
+ case 'd':
+ options->grp_indexed = HDatoi( opt_arg );
+ if (options->grp_indexed > 0)
+ options->latest = TRUE; /* must use latest format */
+ break;
+
+ case 's':
+ {
+ int idx = 0;
+ int ssize = 0;
+ char *msgPtr = HDstrchr( opt_arg, ':');
+ options->latest = TRUE; /* must use latest format */
+ if (msgPtr == NULL) {
+ ssize = HDatoi( opt_arg );
+ for (idx = 0; idx < 5; idx++)
+ options->msg_size[idx] = ssize;
+ }
+ else {
+ char msgType[10];
+ HDstrcpy(msgType, msgPtr + 1);
+ msgPtr[0] = '\0';
+ ssize = HDatoi( opt_arg );
+ if (HDstrncmp(msgType, "dspace",6) == 0) {
+ options->msg_size[0] = ssize;
+ }
+ else if (HDstrncmp(msgType, "dtype", 5) == 0) {
+ options->msg_size[1] = ssize;
+ }
+ else if (HDstrncmp(msgType, "fill", 4) == 0) {
+ options->msg_size[2] = ssize;
+ }
+ else if (HDstrncmp(msgType, "pline", 5) == 0) {
+ options->msg_size[3] = ssize;
+ }
+ else if (HDstrncmp(msgType, "attr", 4) == 0) {
+ options->msg_size[4] = ssize;
+ }
+ }
+ }
+ break;
+
+ case 'u':
+ options->ublock_filename = opt_arg;
+ break;
+
+ case 'b':
+ options->ublock_size = (hsize_t) HDatol( opt_arg );
+ break;
+
+ case 'M':
+ options->meta_block_size = (hsize_t) HDatol( opt_arg );
+ break;
+
+ case 't':
+ options->threshold = (hsize_t) HDatol( opt_arg );
+ break;
+
+ case 'a':
+ options->alignment = HDstrtoull(opt_arg , NULL, 0);
+ if (options->alignment < 1) {
+ error_msg("invalid alignment size\n", opt_arg);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
+ goto done;
+ }
+ break;
+
+ case 'S':
+ {
+ char strategy[MAX_NC_NAME];
+
+ HDstrcpy(strategy, opt_arg);
+ if (!HDstrcmp(strategy, "ALL_PERSIST"))
+ options->fs_strategy = H5F_FILE_SPACE_ALL_PERSIST;
+ else if (!HDstrcmp(strategy, "ALL"))
+ options->fs_strategy = H5F_FILE_SPACE_ALL;
+ else if (!HDstrcmp(strategy, "AGGR_VFD"))
+ options->fs_strategy = H5F_FILE_SPACE_AGGR_VFD;
+ else if (!HDstrcmp(strategy, "VFD"))
+ options->fs_strategy = H5F_FILE_SPACE_VFD;
+ else {
+ error_msg("invalid file space management strategy\n", opt_arg);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
+ goto done;
+ }
+ }
+ break;
+
+ case 'T':
+ options->fs_threshold = (hsize_t) HDatol( opt_arg );
+ break;
+
+ case 'E':
+ enable_error_stack = TRUE;
+ break;
+
+ default:
+ break;
+ } /* switch */
+
+ } /* while */
+
+ if (has_i_o == 0) {
+ /* check for file names to be processed */
+ if (argc <= opt_ind || argv[opt_ind + 1] == NULL) {
+ error_msg("missing file names\n");
+ usage(h5tools_getprogname());
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
+ }
+ }
+
+done:
+ return ret_value;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: main
+ *
+ * Purpose: h5repack main program
+ *
+ * Return: Success: EXIT_SUCCESS(0)
+ *
+ * Failure: EXIT_FAILURE(1)
+ *
+ * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
+ *
+ * Date: May 9, 2003
+ *
+ * Comments:
+ *
+ *-------------------------------------------------------------------------
+ */
+int main(int argc, const char **argv) {
+ H5E_auto2_t func;
+ H5E_auto2_t tools_func;
+ void *edata;
+ void *tools_edata;
+
+ pack_opt_t options; /*the global options */
+
+ h5tools_setprogname(PROGRAMNAME);
+ h5tools_setstatus(EXIT_SUCCESS);
+
+ /* Disable error reporting */
+ H5Eget_auto2(H5E_DEFAULT, &func, &edata);
+ H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
+
+ /* Initialize h5tools lib */
+ h5tools_init();
+
+ /* Disable tools error reporting */
+ H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
+ H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
+
+ /* update hyperslab buffer size from H5TOOLS_BUFSIZE env if exist */
+ if (h5tools_getenv_update_hyperslab_bufsize() < 0) {
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
+
+ /* initialize options */
+ h5repack_init(&options, 0, FALSE, H5F_FILE_SPACE_DEFAULT, (hsize_t) 0);
+
+ if (parse_command_line(argc, argv, &options) < 0)
+ goto done;
+
+ /* get file names if they were not yet got */
+ if (has_i_o == 0) {
+
+ if (argv[opt_ind] != NULL && argv[opt_ind + 1] != NULL) {
+ infile = argv[opt_ind];
+ outfile = argv[opt_ind + 1];
+
+ if ( HDstrcmp( infile, outfile ) == 0) {
+ error_msg("file names cannot be the same\n");
+ usage(h5tools_getprogname());
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
+ }
+ else {
+ error_msg("file names missing\n");
+ usage(h5tools_getprogname());
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
+ }
+
+ if (enable_error_stack) {
+ H5Eset_auto2(H5E_DEFAULT, func, edata);
+ H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
+ }
+
+ /* pack it */
+ h5tools_setstatus(h5repack(infile, outfile, &options));
+
+done:
+ /* free tables */
+ h5repack_end(&options);
+
+ leave(h5tools_getstatus());
+}
+
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