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+usage: h5repack [OPTIONS] file1 file2
+ file1 Input HDF5 File
+ file2 Output HDF5 File
+ ERROR
+ --enable-error-stack Prints messages from the HDF5 error stack as they occur.
+ Optional value 2 also prints file open errors.
+ OPTIONS
+ -h, --help Print a usage message and exit
+ -v N, --verbose=N Verbose mode, print object information.
+ N - is an integer greater than 1, 2 displays read/write timing
+ -V, --version Print version number and exit
+ -n, --native Use a native HDF5 type when repacking
+ --src-vol-value Value (ID) of the VOL connector to use for opening the
+ input HDF5 file specified
+ --src-vol-name Name of the VOL connector to use for opening the input
+ HDF5 file specified
+ --src-vol-info VOL-specific info to pass to the VOL connector used for
+ opening the input HDF5 file specified
+ --dst-vol-value Value (ID) of the VOL connector to use for opening the
+ output HDF5 file specified
+ --dst-vol-name Name of the VOL connector to use for opening the output
+ HDF5 file specified
+ --dst-vol-info VOL-specific info to pass to the VOL connector used for
+ opening the output HDF5 file specified
+ --src-vfd-value Value (ID) of the VFL driver to use for opening the
+ input HDF5 file specified
+ --src-vfd-name Name of the VFL driver to use for opening the input
+ HDF5 file specified
+ --src-vfd-info VFD-specific info to pass to the VFL driver used for
+ opening the input HDF5 file specified
+ --dst-vfd-value Value (ID) of the VFL driver to use for opening the
+ output HDF5 file specified
+ --dst-vfd-name Name of the VFL driver to use for opening the output
+ HDF5 file specified
+ --dst-vfd-info VFD-specific info to pass to the VFL driver used for
+ opening the output HDF5 file specified
+ -L, --latest Use latest version of file format
+ This option will take precedence over the options
+ --low and --high
+ --low=BOUND The low bound for library release versions to use
+ when creating objects in the file
+ (default is H5F_LIBVER_EARLIEST)
+ --high=BOUND The high bound for library release versions to use
+ when creating objects in the file
+ (default is H5F_LIBVER_LATEST)
+ --merge Follow external soft link recursively and merge data
+ --prune Do not follow external soft links and remove link
+ --merge --prune Follow external link, merge data and remove dangling link
+ -c L1, --compact=L1 Maximum number of links in header messages
+ -d L2, --indexed=L2 Minimum number of links in the indexed format
+ -s S[:F], --ssize=S[:F] Shared object header message minimum size
+ -m M, --minimum=M Do not apply the filter to datasets smaller than M
+ -e E, --file=E Name of file E with the -f and -l options
+ -u U, --ublock=U Name of file U with user block data to be added
+ -b B, --block=B Size of user block to be added
+ -M A, --metadata_block_size=A Metadata block size for H5Pset_meta_block_size
+ -t T, --threshold=T Threshold value for H5Pset_alignment
+ -a A, --alignment=A Alignment value for H5Pset_alignment
+ -q Q, --sort_by=Q Sort groups and attributes by index Q
+ -z Z, --sort_order=Z Sort groups and attributes by order Z
+ -f FILT, --filter=FILT Filter type
+ -l LAYT, --layout=LAYT Layout type
+ -S FS_STRATEGY, --fs_strategy=FS_STRATEGY File space management strategy for
+ H5Pset_file_space_strategy
+ -P FS_PERSIST, --fs_persist=FS_PERSIST Persisting or not persisting free-
+ space for H5Pset_file_space_strategy
+ -T FS_THRESHOLD, --fs_threshold=FS_THRESHOLD Free-space section threshold
+ for H5Pset_file_space_strategy
+ -G FS_PAGESIZE, --fs_pagesize=FS_PAGESIZE File space page size for
+ H5Pset_file_space_page_size
+
+ M - is an integer greater than 1, size of dataset in bytes (default is 0)
+ E - is a filename.
+ S - is an integer
+ U - is a filename.
+ T - is an integer
+ A - is an integer greater than zero
+ Q - is the sort index type for the input file. It can be "name" or
+ "creation_order" (default)
+ Z - is the sort order type for the input file. It can be "descending" or
+ "ascending" (default)
+ B - is the user block size, any value that is 512 or greater and is
+ a power of 2 (1024 default)
+ F - is the shared object header message type, any of <dspace|dtype|fill|
+ pline|attr>. If F is not specified, S applies to all messages
+
+ BOUND is an integer indicating the library release versions to use when
+ creating objects in the file (see H5Pset_libver_bounds()):
+ 0: This is H5F_LIBVER_EARLIEST in H5F_libver_t struct
+ 1: This is H5F_LIBVER_V18 in H5F_libver_t struct
+ 2: This is H5F_LIBVER_V110 in H5F_libver_t struct
+ 3: This is H5F_LIBVER_V112 in H5F_libver_t struct
+ 4: This is H5F_LIBVER_V114 in H5F_libver_t struct
+ 5: This is H5F_LIBVER_V116 in H5F_libver_t struct
+ (H5F_LIBVER_LATEST is aliased to H5F_LIBVER_V116 for this release
+
+ FS_STRATEGY is a string indicating the file space strategy used:
+ FSM_AGGR:
+ The mechanisms used in managing file space are free-space
+ managers, aggregators and virtual file driver.
+ PAGE:
+ The mechanisms used in managing file space are free-space
+ managers with embedded paged aggregation and virtual file driver.
+ AGGR:
+ The mechanisms used in managing file space are aggregators and
+ virtual file driver.
+ NONE:
+ The mechanisms used in managing file space are virtual file
+ driver.
+ The default strategy when not set is FSM_AGGR without persisting free-
+ space.
+
+ FS_PERSIST is 1 to persisting free-space or 0 to not persisting free-space.
+ The default when not set is not persisting free-space.
+ The value is ignored for AGGR and NONE strategies.
+
+ FS_THRESHOLD is the minimum size (in bytes) of free-space sections to be
+ tracked by the library.
+ The default when not set is 1.
+ The value is ignored for AGGR and NONE strategies.
+
+ FS_PAGESIZE is the size (in bytes) >=512 that is used by the library when
+ the file space strategy PAGE is used.
+ The default when not set is 4096.
+
+ FILT - is a string with the format:
+
+ <list of objects>:<name of filter>=<filter parameters>
+
+ <list of objects> is a comma separated list of object names, meaning apply
+ compression only to those objects. If no names are specified, the filter
+ is applied to all objects
+ <name of filter> can be:
+ GZIP, to apply the HDF5 GZIP filter (GZIP compression)
+ SZIP, to apply the HDF5 SZIP filter (SZIP compression)
+ SHUF, to apply the HDF5 shuffle filter
+ FLET, to apply the HDF5 checksum filter
+ NBIT, to apply the HDF5 NBIT filter (NBIT compression)
+ SOFF, to apply the HDF5 Scale/Offset filter
+ UD, to apply a user defined filter
+ NONE, to remove all filters
+ <filter parameters> is optional filter parameter information
+ GZIP=<deflation level> from 1-9
+ SZIP=<pixels per block,coding> pixels per block is a even number in
+ 2-32 and coding method is either EC or NN
+ SHUF (no parameter)
+ FLET (no parameter)
+ NBIT (no parameter)
+ SOFF=<scale_factor,scale_type> scale_factor is an integer and scale_type
+ is either IN or DS
+ UD=<filter_number,filter_flag,cd_value_count,value1[,value2,...,valueN]>
+ Required values: filter_number, filter_flag, cd_value_count, value1
+ Optional values: value2 to valueN
+ filter_flag: 1 is OPTIONAL or 0 is MANDATORY
+ NONE (no parameter)
+
+ LAYT - is a string with the format:
+
+ <list of objects>:<layout type>=<layout parameters>
+
+ <list of objects> is a comma separated list of object names, meaning that
+ layout information is supplied for those objects. If no names are
+ specified, the layout type is applied to all objects
+ <layout type> can be:
+ CHUNK, to apply chunking layout
+ COMPA, to apply compact layout
+ CONTI, to apply contiguous layout
+ <layout parameters> is optional layout information
+ CHUNK=DIM[xDIM...xDIM], the chunk size of each dimension
+ COMPA (no parameter)
+ CONTI (no parameter)
+
+Examples of use:
+
+1) h5repack -v -f GZIP=1 file1 file2
+
+ GZIP compression with level 1 to all objects
+
+2) h5repack -v -f dset1:SZIP=8,NN file1 file2
+
+ SZIP compression with 8 pixels per block and NN coding method to object dset1
+
+3) h5repack -v -l dset1,dset2:CHUNK=20x10 -f dset3,dset4,dset5:NONE file1 file2
+
+ Chunked layout, with a layout size of 20x10, to objects dset1 and dset2
+ and remove filters to objects dset3, dset4, dset5
+
+4) h5repack -L -c 10 -s 20:dtype file1 file2
+
+ Using latest file format with maximum compact group size of 10 and
+ minimum shared datatype size of 20
+
+5) h5repack -f SHUF -f GZIP=1 file1 file2
+
+ Add both filters SHUF and GZIP in this order to all datasets
+
+6) h5repack -f UD=307,0,1,9 file1 file2
+
+ Add bzip2 filter to all datasets
+
+7) h5repack --low=0 --high=1 file1 file2
+
+ Set low=H5F_LIBVER_EARLIEST and high=H5F_LIBVER_V18 via
+ H5Pset_libver_bounds() when creating the repacked file, file2
+