diff options
Diffstat (limited to 'tools/test/h5repack')
53 files changed, 11820 insertions, 0 deletions
diff --git a/tools/test/h5repack/CMakeLists.txt b/tools/test/h5repack/CMakeLists.txt new file mode 100644 index 0000000..cecec53 --- /dev/null +++ b/tools/test/h5repack/CMakeLists.txt @@ -0,0 +1,79 @@ +cmake_minimum_required (VERSION 3.1.0) +PROJECT (HDF5_TOOLS_TEST_H5REPACK) + +#----------------------------------------------------------------------------- +# Setup include Directories +#----------------------------------------------------------------------------- +INCLUDE_DIRECTORIES (${HDF5_TOOLS_DIR}/lib) +INCLUDE_DIRECTORIES (${HDF5_TOOLS_DIR}/src/h5repack) +INCLUDE_DIRECTORIES (${HDF5_TEST_SRC_DIR}) + +# -------------------------------------------------------------------- +# Add h5Repack test executables +# -------------------------------------------------------------------- +add_executable (testh5repack_detect_szip ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testh5repack_detect_szip.c) +TARGET_NAMING (testh5repack_detect_szip STATIC) +TARGET_C_PROPERTIES (testh5repack_detect_szip STATIC " " " ") +target_link_libraries (testh5repack_detect_szip ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) +set_target_properties (testh5repack_detect_szip PROPERTIES FOLDER tools) + +set (REPACK_COMMON_SOURCES + ${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR}/h5repack_copy.c + ${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR}/h5repack_filters.c + ${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR}/h5repack_opttable.c + ${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR}/h5repack_parse.c + ${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR}/h5repack_refs.c + ${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR}/h5repack_verify.c + ${HDF5_TOOLS_SRC_H5REPACK_SOURCE_DIR}/h5repack.c +) +add_executable (h5repacktest ${REPACK_COMMON_SOURCES} ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/h5repacktst.c) +TARGET_NAMING (h5repacktest STATIC) +TARGET_C_PROPERTIES (h5repacktest STATIC " " " ") +target_link_libraries (h5repacktest ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) +set_target_properties (h5repacktest PROPERTIES FOLDER tools) + + #----------------------------------------------------------------------------- + # If plugin library tests can be tested + #----------------------------------------------------------------------------- + set (HDF5_TOOL_PLUGIN_LIB_CORENAME "dynlibadd") + set (HDF5_TOOL_PLUGIN_LIB_NAME "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_TOOL_PLUGIN_LIB_CORENAME}") + set (HDF5_TOOL_PLUGIN_LIB_TARGET ${HDF5_TOOL_PLUGIN_LIB_CORENAME}) + set (HDF5_TOOL_PLUGIN_LIB_VCORENAME "dynlibvers") + set (HDF5_TOOL_PLUGIN_LIB_VNAME "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_TOOL_PLUGIN_LIB_VCORENAME}") + set (HDF5_TOOL_PLUGIN_LIB_VTARGET ${HDF5_TOOL_PLUGIN_LIB_VCORENAME}) + add_definitions (${HDF_EXTRA_C_FLAGS}) + INCLUDE_DIRECTORIES (${HDF5_SRC_DIR}) + + add_library (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_rpk.c) + TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED " " " ") + target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) + H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED ${HDF5_PACKAGE_SOVERSION}) + + add_library (${HDF5_TOOL_PLUGIN_LIB_VTARGET} SHARED dynlib_vrpk.c) + TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_VTARGET} SHARED " " " ") + target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_VTARGET} ${HDF5_TEST_LIB_TARGET}) + H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_VTARGET} ${HDF5_TOOL_PLUGIN_LIB_VNAME} SHARED ${HDF5_PACKAGE_SOVERSION}) + + # make plugins dir + file (MAKE_DIRECTORY "${CMAKE_BINARY_DIR}/plugins") + #----------------------------------------------------------------------------- + # Copy plugin library to a plugins folder + #----------------------------------------------------------------------------- + add_custom_command ( + TARGET ${HDF5_TOOL_PLUGIN_LIB_TARGET} + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different + "$<TARGET_FILE:${HDF5_TOOL_PLUGIN_LIB_TARGET}>" + "${CMAKE_BINARY_DIR}/plugins/$<TARGET_FILE_NAME:${HDF5_TOOL_PLUGIN_LIB_TARGET}>" + ) + add_custom_command ( + TARGET ${HDF5_TOOL_PLUGIN_LIB_VTARGET} + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different + "$<TARGET_FILE:${HDF5_TOOL_PLUGIN_LIB_VTARGET}>" + "${CMAKE_BINARY_DIR}/plugins/$<TARGET_FILE_NAME:${HDF5_TOOL_PLUGIN_LIB_VTARGET}>" + ) + + include (CMakeTests.cmake) diff --git a/tools/test/h5repack/CMakeTests.cmake b/tools/test/h5repack/CMakeTests.cmake new file mode 100644 index 0000000..f3ef2a5 --- /dev/null +++ b/tools/test/h5repack/CMakeTests.cmake @@ -0,0 +1,1153 @@ + +############################################################################## +############################################################################## +### T E S T I N G ### +############################################################################## +############################################################################## + + if (HDF5_TEST_VFD) + set (VFD_LIST + sec2 + stdio + core + split + multi + family + ) + + if (DIRECT_VFD) + set (VFD_LIST ${VFD_LIST} direct) + endif (DIRECT_VFD) + + MACRO (ADD_VFD_TEST vfdname resultcode) + add_test ( + NAME H5REPACK-VFD-${vfdname}-h5repacktest + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5repacktest>" + -D "TEST_ARGS:STRING=" + -D "TEST_VFD:STRING=${vfdname}" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_OUTPUT=h5repacktest" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -P "${HDF_RESOURCES_DIR}/vfdTest.cmake" + ) + if (NOT "${last_test}" STREQUAL "") + set_tests_properties (H5REPACK-VFD-${vfdname}-h5repacktest PROPERTIES DEPENDS ${last_test}) + endif (NOT "${last_test}" STREQUAL "") + set (last_test "H5REPACK-VFD-${vfdname}-h5repacktest") + ENDMACRO (ADD_VFD_TEST) + endif (HDF5_TEST_VFD) + + # -------------------------------------------------------------------- + # Copy all the HDF5 files from the source directory into the test directory + # -------------------------------------------------------------------- + set (LIST_HDF5_TEST_FILES + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_attr.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_attr_refs.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_deflate.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_early.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_ext.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_fill.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_filters.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_fletcher.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_hlink.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layouto.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout2.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout3.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout.UD.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_named_dtypes.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_nbit.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_objs.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_refs.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_shuffle.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_soffset.h5 + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_szip.h5 + # h5diff/testfile + ${HDF5_TOOLS_TEST_H5DIFF_SOURCE_DIR}/testfiles/h5diff_attr1.h5 + # tools/testfiles + ${HDF5_TOOLS_DIR}/testfiles/tfamily00000.h5 + ${HDF5_TOOLS_DIR}/testfiles/tfamily00001.h5 + ${HDF5_TOOLS_DIR}/testfiles/tfamily00002.h5 + ${HDF5_TOOLS_DIR}/testfiles/tfamily00003.h5 + ${HDF5_TOOLS_DIR}/testfiles/tfamily00004.h5 + ${HDF5_TOOLS_DIR}/testfiles/tfamily00005.h5 + ${HDF5_TOOLS_DIR}/testfiles/tfamily00006.h5 + ${HDF5_TOOLS_DIR}/testfiles/tfamily00007.h5 + ${HDF5_TOOLS_DIR}/testfiles/tfamily00008.h5 + ${HDF5_TOOLS_DIR}/testfiles/tfamily00009.h5 + ${HDF5_TOOLS_DIR}/testfiles/tfamily00010.h5 + # tools/testfiles/vds + ${HDF5_TOOLS_DIR}/testfiles/vds/1_a.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/1_b.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/1_c.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/1_d.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/1_e.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/1_f.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/1_vds.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/2_a.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/2_b.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/2_c.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/2_d.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/2_e.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/2_vds.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/3_1_vds.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/3_2_vds.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/4_0.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/4_1.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/4_2.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/4_vds.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/5_a.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/5_b.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/5_c.h5 + ${HDF5_TOOLS_DIR}/testfiles/vds/5_vds.h5 + ) + + set (LIST_OTHER_TEST_FILES + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack-help.txt + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_ext.bin + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/ublock.bin + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack.info + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/deflate_limit.h5repack_layout.h5.ddl + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout.h5.ddl + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_filters.h5-gzip_verbose_filters.tst + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout.h5-plugin_test.ddl + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/plugin_test.h5repack_layout.h5.tst + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout.UD.h5-plugin_none.ddl + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/plugin_none.h5repack_layout.UD.h5.tst + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout.h5-plugin_version_test.ddl + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/plugin_version_test.h5repack_layout.h5.tst + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/1_vds.h5-vds_dset_chunk20x10x5-v.ddl + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/2_vds.h5-vds_chunk3x6x9-v.ddl + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/3_1_vds.h5-vds_chunk2x5x8-v.ddl + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/4_vds.h5-vds_compa-v.ddl + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/4_vds.h5-vds_conti-v.ddl + ${HDF5_TOOLS_TEST_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout.h5-plugin_zero.tst + ) + + foreach (h5_file ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES}) + get_filename_component(fname "${h5_file}" NAME) + HDFTEST_COPY_FILE("${h5_file}" "${PROJECT_BINARY_DIR}/testfiles/${fname}" "h5repack_files") + endforeach (h5_file ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES}) + add_custom_target(h5repack_files ALL COMMENT "Copying files needed by h5repack tests" DEPENDS ${h5repack_files_list}) + +############################################################################## +############################################################################## +### T H E T E S T S M A C R O S ### +############################################################################## +############################################################################## + + MACRO (ADD_HELP_TEST testname resultcode) + # If using memchecker add tests without using scripts + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME H5REPACK-${testname} COMMAND $<TARGET_FILE:h5repack> ${ARGN}) + set_tests_properties (H5REPACK-${testname} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + if (NOT "${last_test}" STREQUAL "") + set_tests_properties (H5REPACK-${testname} PROPERTIES DEPENDS ${last_test}) + endif () + set (last_test "H5REPACK-${testname}") + else (HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK-h5repack-${testname} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5repack>" + -D "TEST_ARGS:STRING=${ARGN}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=h5repack-${testname}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=h5repack-${testname}.txt" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + endif (HDF5_ENABLE_USING_MEMCHECKER) + ENDMACRO (ADD_HELP_TEST) + + MACRO (ADD_H5_TEST_OLD testname testtype testfile) + if ("${testtype}" STREQUAL "SKIP") + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_OLD-${testname}-SKIPPED + COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} -i ${PROJECT_BINARY_DIR}/testfiles/${testfile} -o ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}" + ) + endif (NOT HDF5_ENABLE_USING_MEMCHECKER) + else ("${testtype}" STREQUAL "SKIP") + add_test ( + NAME H5REPACK_OLD-${testname} + COMMAND $<TARGET_FILE:h5repack> ${ARGN} -i ${PROJECT_BINARY_DIR}/testfiles/${testfile} -o ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + ) + if (NOT "${last_test}" STREQUAL "") + set_tests_properties (H5REPACK_OLD-${testname} PROPERTIES DEPENDS ${last_test}) + endif () + add_test ( + NAME H5REPACK_OLD-${testname}_DFF + COMMAND $<TARGET_FILE:h5diff> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + ) + set_tests_properties (H5REPACK_OLD-${testname}_DFF PROPERTIES DEPENDS H5REPACK_OLD-${testname}) + endif ("${testtype}" STREQUAL "SKIP") + ENDMACRO (ADD_H5_TEST_OLD) + + MACRO (ADD_H5_TEST testname testtype testfile) + if ("${testtype}" STREQUAL "SKIP") + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK-${testname}-SKIPPED + COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}" + ) + endif (NOT HDF5_ENABLE_USING_MEMCHECKER) + else ("${testtype}" STREQUAL "SKIP") + add_test ( + NAME H5REPACK-${testname} + COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + ) + if (NOT "${last_test}" STREQUAL "") + set_tests_properties (H5REPACK-${testname} PROPERTIES DEPENDS ${last_test}) + endif () + add_test ( + NAME H5REPACK-${testname}_DFF + COMMAND $<TARGET_FILE:h5diff> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + ) + set_tests_properties (H5REPACK-${testname}_DFF PROPERTIES DEPENDS H5REPACK-${testname}) + endif ("${testtype}" STREQUAL "SKIP") + ENDMACRO (ADD_H5_TEST) + + MACRO (ADD_H5_CMP_TEST testname testfilter testtype resultcode resultfile) + if ("${testtype}" STREQUAL "SKIP") + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_CMP-${testname}-SKIPPED + COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile}" + ) + endif (NOT HDF5_ENABLE_USING_MEMCHECKER) + else ("${testtype}" STREQUAL "SKIP") + # If using memchecker add tests without using scripts + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_CMP-${testname} + COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile}) + else (HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_CMP-${testname} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5repack>" + -D "TEST_ARGS:STRING=${ARGN};${resultfile};out-${testname}.${resultfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=${resultfile}-${testname}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_FILTER:STRING=${testfilter}" + -D "TEST_REFERENCE=${resultfile}-${testname}.tst" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + endif (HDF5_ENABLE_USING_MEMCHECKER) + if (NOT "${last_test}" STREQUAL "") + set_tests_properties (H5REPACK_CMP-${testname} PROPERTIES DEPENDS ${last_test}) + endif () + endif ("${testtype}" STREQUAL "SKIP") + ENDMACRO (ADD_H5_CMP_TEST) + + MACRO (ADD_H5_MASK_TEST testname testtype resultcode resultfile) + if ("${testtype}" STREQUAL "SKIP") + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_MASK-${testname}-SKIPPED + COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile}" + ) + endif (NOT HDF5_ENABLE_USING_MEMCHECKER) + else ("${testtype}" STREQUAL "SKIP") + # If using memchecker add tests without using scripts + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_MASK-${testname} + COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile}) + else (HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_MASK-${testname} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5repack>" + -D "TEST_ARGS:STRING=${ARGN};${resultfile};out-${testname}.${resultfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=${resultfile}-${testname}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_MASK_ERROR=true" + -D "TEST_REFERENCE=${resultfile}-${testname}.tst" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + endif (HDF5_ENABLE_USING_MEMCHECKER) + if (NOT "${last_test}" STREQUAL "") + set_tests_properties (H5REPACK_MASK-${testname} PROPERTIES DEPENDS ${last_test}) + endif () + endif ("${testtype}" STREQUAL "SKIP") + ENDMACRO (ADD_H5_MASK_TEST) + + MACRO (ADD_H5_DMP_TEST testname testtype resultcode resultfile) + if ("${testtype}" STREQUAL "SKIP") + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_DMP-${testname}-SKIPPED + COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile}" + ) + endif (NOT HDF5_ENABLE_USING_MEMCHECKER) + else ("${testtype}" STREQUAL "SKIP") + # If using memchecker add tests without using scripts + add_test ( + NAME H5REPACK_DMP-${testname} + COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile}) + if (NOT "${last_test}" STREQUAL "") + set_tests_properties (H5REPACK_DMP-${testname} PROPERTIES DEPENDS ${last_test}) + endif () + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_DMP-h5dump-${testname} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" + -D "TEST_ARGS:STRING=-pH;out-${testname}.${resultfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=${resultfile}-${testname}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=${testname}.${resultfile}.ddl" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + set_tests_properties (H5REPACK_DMP-h5dump-${testname} PROPERTIES DEPENDS "H5REPACK_DMP-${testname}") + endif (NOT HDF5_ENABLE_USING_MEMCHECKER) + endif ("${testtype}" STREQUAL "SKIP") + ENDMACRO (ADD_H5_DMP_TEST) + + MACRO (ADD_H5_VERIFY_TEST testname testtype resultcode testfile testdset testfilter) + if ("${testtype}" STREQUAL "SKIP") + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_VERIFY_LAYOUT-${testname}-SKIPPED + COMMAND ${CMAKE_COMMAND} -E echo "SKIP -d ${testdset} -pH ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile}" + ) + endif (NOT HDF5_ENABLE_USING_MEMCHECKER) + else ("${testtype}" STREQUAL "SKIP") + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_VERIFY_LAYOUT-${testname} + COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + ) + if (NOT "${last_test}" STREQUAL "") + set_tests_properties (H5REPACK_VERIFY_LAYOUT-${testname} PROPERTIES DEPENDS ${last_test}) + endif () + add_test ( + NAME H5REPACK_VERIFY_LAYOUT-${testname}_DFF + COMMAND $<TARGET_FILE:h5diff> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + ) + set_tests_properties (H5REPACK_VERIFY_LAYOUT-${testname}_DFF PROPERTIES DEPENDS H5REPACK_VERIFY_LAYOUT-${testname}) + if ("${resultcode}" STREQUAL "0") + add_test ( + NAME H5REPACK_VERIFY_LAYOUT-${testname}_DMP + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" + -D "TEST_ARGS:STRING=-d;${testdset};-pH;out-${testname}.${testfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=${testfile}-${testname}-v.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_FILTER:STRING=${testfilter}" + -D "TEST_REFERENCE=${testfilter}" + -P "${HDF_RESOURCES_EXT_DIR}/grepTest.cmake" + ) + set_tests_properties (H5REPACK_VERIFY_LAYOUT-${testname}_DMP PROPERTIES DEPENDS H5REPACK_VERIFY_LAYOUT-${testname}_DFF) + else ("${resultcode}" STREQUAL "0") + if ("${testfilter}" STREQUAL "CHUNKED") + set (nottestfilter "(CONTIGUOUS|COMPACT)") + endif () + if ("${testfilter}" STREQUAL "CONTIGUOUS") + set (nottestfilter "(CHUNK|COMPACT)") + endif () + if ("${testfilter}" STREQUAL "COMPACT") + set (nottestfilter "(CONTIGUOUS|CHUNK)") + endif () + add_test ( + NAME H5REPACK_VERIFY_LAYOUT-${testname}_DMP + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" + -D "TEST_ARGS:STRING=-pH;out-${testname}.${testfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=${testfile}-${testname}-v.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_FILTER:STRING=${nottestfilter}" + -D "TEST_REFERENCE=${testfilter}" + -P "${HDF_RESOURCES_EXT_DIR}/grepTest.cmake" + ) + set_tests_properties (H5REPACK_VERIFY_LAYOUT-${testname}_DMP PROPERTIES DEPENDS H5REPACK_VERIFY_LAYOUT-${testname}_DFF) + endif ("${resultcode}" STREQUAL "0") + endif (NOT HDF5_ENABLE_USING_MEMCHECKER) + endif ("${testtype}" STREQUAL "SKIP") + ENDMACRO (ADD_H5_VERIFY_TEST) + + MACRO (ADD_H5_VERIFY_VDS testname testtype resultcode testfile testdset testfilter) + if ("${testtype}" STREQUAL "SKIP") + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_VERIFY_LAYOUT_VDS-${testname}-SKIPPED + COMMAND ${CMAKE_COMMAND} -E echo "SKIP -d ${testdset} -pH ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile}" + ) + endif (NOT HDF5_ENABLE_USING_MEMCHECKER) + else ("${testtype}" STREQUAL "SKIP") + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5REPACK_VERIFY_LAYOUT_VDS-${testname} + COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile} + ) + set_tests_properties (H5REPACK_VERIFY_LAYOUT_VDS-${testname} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + if (NOT "${last_test}" STREQUAL "") + set_tests_properties (H5REPACK_VERIFY_LAYOUT_VDS-${testname} PROPERTIES DEPENDS ${last_test}) + endif () + add_test ( + NAME H5REPACK_VERIFY_LAYOUT_VDS-${testname}_DMP + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" + -D "TEST_ARGS:STRING=-d;${testdset};-p;out-${testname}.${testfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=${testfile}-${testname}-v.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=${testfile}-${testname}-v.ddl" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + set_tests_properties (H5REPACK_VERIFY_LAYOUT_VDS-${testname}_DMP PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + set_tests_properties (H5REPACK_VERIFY_LAYOUT_VDS-${testname}_DMP PROPERTIES DEPENDS H5REPACK_VERIFY_LAYOUT_VDS-${testname}) + endif (NOT HDF5_ENABLE_USING_MEMCHECKER) + endif ("${testtype}" STREQUAL "SKIP") + ENDMACRO (ADD_H5_VERIFY_VDS) + + MACRO (ADD_H5_TEST_META testname testfile) + add_test ( + NAME H5REPACK_META-${testname}_N + COMMAND $<TARGET_FILE:h5repack> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_N.${testname}.h5 + ) + if (NOT "${last_test}" STREQUAL "") + set_tests_properties (H5REPACK_META-${testname}_N PROPERTIES DEPENDS ${last_test}) + endif () + add_test ( + NAME H5REPACK_META-${testname}_M + COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_M.${testname}.h5 + ) + set_tests_properties (H5REPACK_META-${testname}_M PROPERTIES DEPENDS H5REPACK_META-${testname}_N) + + add_test (NAME H5REPACK_META-${testname} COMMAND ${CMAKE_COMMAND} -E compare_files ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_N.${testname}.h5 ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_M.${testname}.h5) + set_tests_properties (H5REPACK_META-${testname} PROPERTIES WILL_FAIL "true") + set_tests_properties (H5REPACK_META-${testname} PROPERTIES DEPENDS H5REPACK_META-${testname}_M) + ENDMACRO (ADD_H5_TEST_META) + + MACRO (ADD_H5_UD_TEST testname resultcode resultfile) + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + # Remove any output file left over from previous test run + add_test ( + NAME H5REPACK_UD-${testname}-clearall-objects + COMMAND ${CMAKE_COMMAND} + -E remove + testfiles/out-${testname}.${resultfile} + ) + add_test ( + NAME H5REPACK_UD-${testname} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5repack>" + -D "TEST_ARGS:STRING=${ARGN};${resultfile};out-${testname}.${resultfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_FILTER:STRING=O?...ing file[^\n]+\n" + -D "TEST_OUTPUT=${testname}.${resultfile}.out" + -D "TEST_REFERENCE=${testname}.${resultfile}.tst" + -D "TEST_ENV_VAR=HDF5_PLUGIN_PATH" + -D "TEST_ENV_VALUE=${CMAKE_BINARY_DIR}/plugins" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + set_tests_properties (H5REPACK_UD-${testname} PROPERTIES DEPENDS H5REPACK_UD-${testname}-clearall-objects) + add_test ( + NAME H5REPACK_UD-h5dump-${testname} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" + -D "TEST_ARGS:STRING=-pH;out-${testname}.${resultfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=${resultfile}-${testname}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=${resultfile}-${testname}.ddl" + -D "TEST_ENV_VAR=HDF5_PLUGIN_PATH" + -D "TEST_ENV_VALUE=${CMAKE_BINARY_DIR}/plugins" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + set_tests_properties (H5REPACK_UD-h5dump-${testname} PROPERTIES DEPENDS "H5REPACK_UD-${testname}") + endif (NOT HDF5_ENABLE_USING_MEMCHECKER) + ENDMACRO (ADD_H5_UD_TEST) + +############################################################################## +############################################################################## +### T H E T E S T S ### +############################################################################## +############################################################################## + + # -------------------------------------------------------------------- + # test file names + # -------------------------------------------------------------------- + set (INFO_FILE testfiles/h5repack.info) + + set (FILE0 h5repack_fill.h5) + set (FILE1 h5repack_objs.h5) + set (FILE2 h5repack_attr.h5) + set (FILE3 h5repack_hlink.h5) + set (FILE4 h5repack_layout.h5) + set (FILE5 h5repack_early.h5) + set (FILE7 h5repack_szip.h5) + set (FILE8 h5repack_deflate.h5) + set (FILE9 h5repack_shuffle.h5) + set (FILE10 h5repack_fletcher.h5) + set (FILE11 h5repack_filters.h5) + set (FILE12 h5repack_nbit.h5) + set (FILE13 h5repack_soffset.h5) + set (FILE14 h5repack_layouto.h5 ) # A file with an older version of the layout message (copy of test/tlayouto.h5) + set (FILE15 h5repack_named_dtypes.h5) + set (FILE16 tfamily%05d.h5) # located in common testfiles folder + set (FILE18 h5repack_layout2.h5) + set (FILE_REF h5repack_refs.h5) + set (FILE_ATTR_REF h5repack_attr_refs.h5) + set (FILEV1 1_vds.h5) + set (FILEV2 2_vds.h5) + set (FILEV3_1 3_1_vds.h5) + set (FILEV3_2 3_2_vds.h5) + set (FILEV4 4_vds.h5) + set (FILEV5 5_vds.h5) + + # Remove any output file left over from previous test run + add_test ( + NAME H5REPACK-clearall-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ./testfiles/h5dump-help.out + ./testfiles/h5repack_filters.h5-gzip_verbose_filters.out + ./testfiles/h5repack_filters.h5-gzip_verbose_filters.out.err + ./testfiles/h5repack_layout.h5-chunk_18x13-v.out + ./testfiles/h5repack_layout.h5-chunk_18x13-v.out.err + ./testfiles/h5repack_layout.h5-chunk_20x10-v.out + ./testfiles/h5repack_layout.h5-chunk_20x10-v.out.err + ./testfiles/h5repack_layout.h5-chunk_compa-v.out + ./testfiles/h5repack_layout.h5-chunk_compa-v.out.err + ./testfiles/h5repack_layout.h5-chunk_conti-v.out + ./testfiles/h5repack_layout.h5-chunk_conti-v.out.err + ./testfiles/h5repack_layout.h5-compa-v.out + ./testfiles/h5repack_layout.h5-compa-v.out.err + ./testfiles/h5repack_layout.h5-conti-v.out + ./testfiles/h5repack_layout.h5-conti-v.out.err + ./testfiles/h5repack_layout.h5-deflate_limit.out + ./testfiles/h5repack_layout.h5-deflate_limit.out.err + ./testfiles/h5repack_layout.h5-dset2_chunk_20x10-v.out + ./testfiles/h5repack_layout.h5-dset2_chunk_20x10-v.out.err + ./testfiles/h5repack_layout.h5-dset2_chunk_20x10-errstk.out + ./testfiles/h5repack_layout.h5-dset2_chunk_20x10-errstk.out.err + ./testfiles/h5repack_layout.h5-dset2_compa-v.out + ./testfiles/h5repack_layout.h5-dset2_compa-v.out.err + ./testfiles/h5repack_layout.h5-dset2_conti-v.out + ./testfiles/h5repack_layout.h5-dset2_conti-v.out.err + ./testfiles/h5repack_layout.h5-dset_compa_chunk-v.out + ./testfiles/h5repack_layout.h5-dset_compa_chunk-v.out.err + ./testfiles/h5repack_layout.h5-dset_compa_compa-v.out + ./testfiles/h5repack_layout.h5-dset_compa_compa-v.out.err + ./testfiles/h5repack_layout.h5-dset_compa_conti-v.out + ./testfiles/h5repack_layout.h5-dset_compa_conti-v.out.err + ./testfiles/h5repack_layout.h5-dset_conti_chunk-v.out + ./testfiles/h5repack_layout.h5-dset_conti_chunk-v.out.err + ./testfiles/h5repack_layout.h5-dset_conti_compa-v.out + ./testfiles/h5repack_layout.h5-dset_conti_compa-v.out.err + ./testfiles/h5repack_layout.h5-dset_conti_conti-v.out + ./testfiles/h5repack_layout.h5-dset_conti_conti-v.out.err + ./testfiles/h5repack_layout.h5-layout_long_switches-v.out + ./testfiles/h5repack_layout.h5-layout_long_switches-v.out.err + ./testfiles/h5repack_layout.h5-layout_short_switches-v.out + ./testfiles/h5repack_layout.h5-layout_short_switches-v.out.err + ./testfiles/h5repack_layout.h5-plugin_test.out + ./testfiles/h5repack_layout.h5-plugin_test.out.err + ./testfiles/h5repack_layout2.h5-contig_small_compa-v.out + ./testfiles/h5repack_layout2.h5-contig_small_compa-v.out.err + ./testfiles/h5repack_layout2.h5-contig_small_fixed_compa-v.out + ./testfiles/h5repack_layout2.h5-contig_small_fixed_compa-v.out.err + ./testfiles/h5repack_layout3.h5-ckdim_biger-v.out + ./testfiles/h5repack_layout3.h5-ckdim_biger-v.out.err + ./testfiles/h5repack_layout3.h5-ckdim_smaller-v.out + ./testfiles/h5repack_layout3.h5-ckdim_smaller-v.out.err + ./testfiles/h5repack_layout3.h5-chunk2chunk-v.out + ./testfiles/h5repack_layout3.h5-chunk2chunk-v.out.err + ./testfiles/h5repack_layout3.h5-chunk2compa-v.out + ./testfiles/h5repack_layout3.h5-chunk2compa-v.out.err + ./testfiles/h5repack_layout3.h5-chunk2conti-v.out + ./testfiles/h5repack_layout3.h5-chunk2conti-v.out.err + ./testfiles/h5repack_layout3.h5-error1-v.out + ./testfiles/h5repack_layout3.h5-error1-v.out.err + ./testfiles/h5repack_layout3.h5-error2-v.out + ./testfiles/h5repack_layout3.h5-error2-v.out.err + ./testfiles/h5repack_layout3.h5-error3-v.out + ./testfiles/h5repack_layout3.h5-error3-v.out.err + ./testfiles/out-family.tfamily%05d.h5 + ./testfiles/out-HDFFV-7840.h5diff_attr1.h5 + ./testfiles/out-attr.h5repack_attr.h5 + ./testfiles/out-native_attr.h5repack_attr.h5 + ./testfiles/out-HDFFV-5932.h5repack_attr_refs.h5 + ./testfiles/out-deflate_copy.h5repack_deflate.h5 + ./testfiles/out-deflate_remove.h5repack_deflate.h5 + ./testfiles/out-early.h5repack_early.h5 + ./testfiles/out-fill.h5repack_fill.h5 + ./testfiles/out-native_fill.h5repack_fill.h5 + ./testfiles/out-gzip_verbose_filters.h5repack_filters.h5 + ./testfiles/out-fletcher_copy.h5repack_fletcher.h5 + ./testfiles/out-fletcher_remove.h5repack_fletcher.h5 + ./testfiles/out-hlink.h5repack_hlink.h5 + ./testfiles/out-chunk_18x13.h5repack_layout.h5 + ./testfiles/out-chunk_20x10.h5repack_layout.h5 + ./testfiles/out-chunk_compa.h5repack_layout.h5 + ./testfiles/out-chunk_conti.h5repack_layout.h5 + ./testfiles/out-compa.h5repack_layout.h5 + ./testfiles/out-conti.h5repack_layout.h5 + ./testfiles/out-deflate_file.h5repack_layout.h5 + ./testfiles/out-deflate_limit.h5repack_layout.h5 + ./testfiles/out-dset2_chunk_20x10.h5repack_layout.h5 + ./testfiles/out-dset2_compa.h5repack_layout.h5 + ./testfiles/out-dset2_conti.h5repack_layout.h5 + ./testfiles/out-dset_compa_chunk.h5repack_layout.h5 + ./testfiles/out-dset_compa_compa.h5repack_layout.h5 + ./testfiles/out-dset_compa_conti.h5repack_layout.h5 + ./testfiles/out-dset_conti_chunk.h5repack_layout.h5 + ./testfiles/out-dset_conti_compa.h5repack_layout.h5 + ./testfiles/out-dset_conti_conti.h5repack_layout.h5 + ./testfiles/out-fletcher_all.h5repack_layout.h5 + ./testfiles/out-fletcher_individual.h5repack_layout.h5 + ./testfiles/out-global_filters.h5repack_layout.h5 + ./testfiles/out-gzip_all.h5repack_layout.h5 + ./testfiles/out-gzip_individual.h5repack_layout.h5 + ./testfiles/out-layout.h5repack_layout.h5 + ./testfiles/out-layout_long_switches.h5repack_layout.h5 + ./testfiles/out-layout_short_switches.h5repack_layout.h5 + ./testfiles/out-old_style_layout_short_switches.h5repack_layout.h5 + ./testfiles/out-plugin_test.h5repack_layout.h5 + ./testfiles/out-shuffle_all.h5repack_layout.h5 + ./testfiles/out-shuffle_individual.h5repack_layout.h5 + ./testfiles/out-upgrade_layout.h5repack_layouto.h5 + ./testfiles/out-contig_small_compa.h5repack_layout2.h5 + ./testfiles/out-contig_small_fixed_compa.h5repack_layout2.h5 + ./testfiles/out-ckdim_biger.h5repack_layout3.h5 + ./testfiles/out-ckdim_smaller.h5repack_layout3.h5 + ./testfiles/out-chunk2chunk.h5repack_layout3.h5 + ./testfiles/out-chunk2compa.h5repack_layout3.h5 + ./testfiles/out-chunk2conti.h5repack_layout3.h5 + ./testfiles/out-error1.h5repack_layout3.h5 + ./testfiles/out-error2.h5repack_layout3.h5 + ./testfiles/out-error3.h5repack_layout3.h5 + ./testfiles/out-error4.h5repack_layout3.h5 + ./testfiles/out-committed_dt.h5repack_named_dtypes.h5 + ./testfiles/out-nbit_add.h5repack_nbit.h5 + ./testfiles/out-nbit_copy.h5repack_nbit.h5 + ./testfiles/out-nbit_remove.h5repack_nbit.h5 + ./testfiles/out-add_alignment.h5repack_objs.h5 + ./testfiles/out-add_userblock.h5repack_objs.h5 + ./testfiles/out-objs.h5repack_objs.h5 + ./testfiles/out-gt_mallocsize.h5repack_objs.h5 + ./testfiles/out-bug1814.h5repack_refs.h5 + ./testfiles/out-shuffle_copy.h5repack_shuffle.h5 + ./testfiles/out-shuffle_remove.h5repack_shuffle.h5 + ./testfiles/out-scale_add.h5repack_soffset.h5 + ./testfiles/out-scale_copy.h5repack_soffset.h5 + ./testfiles/out-scale_remove.h5repack_soffset.h5 + ./testfiles/out-meta_short_M.meta_short.h5 + ./testfiles/out-meta_short_N.meta_short.h5 + ./testfiles/out-meta_long_M.meta_long.h5 + ./testfiles/out-meta_long_N.meta_long.h5 + ./testfiles/1_vds.h5-vds_dset_chunk20x10x5-v.out + ./testfiles/1_vds.h5-vds_dset_chunk20x10x5-v.out.err + ./testfiles/2_vds.h5-vds_chunk3x6x9-v.out + ./testfiles/2_vds.h5-vds_chunk3x6x9-v.out.err + ./testfiles/3_1_vds.h5-vds_chunk2x5x8-v.out + ./testfiles/3_1_vds.h5-vds_chunk2x5x8-v.out.err + ./testfiles/4_vds.h5-vds_compa-v.out + ./testfiles/4_vds.h5-vds_compa-v.out.err + ./testfiles/4_vds.h5-vds_conti-v.out + ./testfiles/4_vds.h5-vds_conti-v.out.err + ./testfiles/out-vds_compa.4_vds.h5 + ./testfiles/out-vds_conti.4_vds.h5 + ./testfiles/out-vds_chunk2x5x8.3_1_vds.h5 + ./testfiles/out-vds_chunk3x6x9.2_vds.h5 + ./testfiles/out-vds_dset_chunk20x10x5.1_vds.h5 + h5repack_attr.h5 + h5repack_attr_out.h5 + h5repack_attr_refs.h5 + h5repack_big.h5 + h5repack_deflate.h5 + h5repack_deflate_out.h5 + h5repack_early2.h5 + h5repack_early.h5 + h5repack_early_out.h5 + h5repack_ext.h5 + h5repack_ext_out.h5 + h5repack_fill.h5 + h5repack_fill_out.h5 + h5repack_filters.h5 + h5repack_filters_out.h5 + h5repack_fletcher.h5 + h5repack_fletcher_out.h5 + h5repack_hlink.h5 + h5repack_hlink_out.h5 + h5repack_layout.h5 + h5repack_layout_out.h5 + h5repack_layout2.h5 + h5repack_layout3.h5 + h5repack_named_dtypes.h5 + h5repack_named_dtypes_out.h5 + h5repack_nbit.h5 + h5repack_nbit_out.h5 + h5repack_objs.h5 + h5repack_objs_out.h5 + h5repack_refs.h5 + h5repack_shuffle.h5 + h5repack_shuffle_out.h5 + h5repack_soffset.h5 + h5repack_soffset_out.h5 + h5repack_szip.h5 + h5repack_szip_out.h5 + h5repack_ub.h5 + h5repack_ub_out.h5 + h5repack_ext.bin + ublock.bin + ) + if (NOT "${last_test}" STREQUAL "") + set_tests_properties (H5REPACK-clearall-objects PROPERTIES DEPENDS ${last_test}) + endif (NOT "${last_test}" STREQUAL "") + + ADD_HELP_TEST(help 0 -h) + + add_test (NAME H5REPACK-testh5repack_detect_szip COMMAND $<TARGET_FILE:testh5repack_detect_szip>) + if (HDF5_ENABLE_SZIP_SUPPORT) + if (HDF5_ENABLE_SZIP_ENCODING) + set (passRegex "yes") + set_tests_properties (H5REPACK-testh5repack_detect_szip PROPERTIES PASS_REGULAR_EXPRESSION "yes") + else (HDF5_ENABLE_SZIP_ENCODING) + set (passRegex "no") + set_tests_properties (H5REPACK-testh5repack_detect_szip PROPERTIES PASS_REGULAR_EXPRESSION "no") + endif (HDF5_ENABLE_SZIP_ENCODING) + else (HDF5_ENABLE_SZIP_SUPPORT) + set (passRegex "no") + set_tests_properties (H5REPACK-testh5repack_detect_szip PROPERTIES PASS_REGULAR_EXPRESSION "no") + endif (HDF5_ENABLE_SZIP_SUPPORT) + set_tests_properties (H5REPACK-testh5repack_detect_szip PROPERTIES DEPENDS H5REPACK-clearall-objects) + + add_test (NAME H5REPACK-h5repacktest COMMAND $<TARGET_FILE:h5repacktest>) + set_tests_properties (H5REPACK-h5repacktest PROPERTIES DEPENDS H5REPACK-testh5repack_detect_szip) + set (last_test "H5REPACK-h5repacktest") + +# +# The tests +# We use the files generated by h5repacktst +# Each run generates "<file>.out.h5" and the tool h5diff is used to +# compare the input and output files +# +# the tests are the same as the program h5repacktst, but run from the CLI +# + +# See which filters are usable (and skip tests for filters we +# don't have). Do this by searching H5pubconf.h to see which +# filters are defined. + +# detect whether the encoder is present. + set (USE_FILTER_SZIP_ENCODER "no") + if (HDF5_ENABLE_SZIP_ENCODING) + set (USE_FILTER_SZIP_ENCODER ${testh5repack_detect_szip}) + endif (HDF5_ENABLE_SZIP_ENCODING) + + if (H5_HAVE_FILTER_DEFLATE) + set (USE_FILTER_DEFLATE "true") + endif (H5_HAVE_FILTER_DEFLATE) + + if (H5_HAVE_FILTER_SZIP) + set (USE_FILTER_SZIP "true") + endif (H5_HAVE_FILTER_SZIP) + +# copy files (these files have no filters) + ADD_H5_TEST (fill "TEST" ${FILE0}) + ADD_H5_TEST (objs "TEST" ${FILE1}) + ADD_H5_TEST (attr "TEST" ${FILE2}) + ADD_H5_TEST (hlink "TEST" ${FILE3}) + ADD_H5_TEST (layout "TEST" ${FILE4}) + ADD_H5_TEST (early "TEST" ${FILE5}) + +# use $FILE4 to write some filters (this file has no filters) + +# gzip with individual object + set (arg ${FILE4} -f dset1:GZIP=1 -l dset1:CHUNK=20x10) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_TEST (gzip_individual ${TESTTYPE} ${arg}) + +# gzip for all + set (arg ${FILE4} -f GZIP=1) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_TEST (gzip_all ${TESTTYPE} ${arg}) + +# szip with individual object + set (arg ${FILE4} -f dset2:SZIP=8,EC -l dset2:CHUNK=20x10) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) + ADD_H5_TEST (szip_individual ${TESTTYPE} ${arg}) + +# szip for all + set (arg ${FILE4} -f SZIP=8,NN) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) + ADD_H5_TEST (szip_all ${TESTTYPE} ${arg}) + +# shuffle with individual object + set (arg ${FILE4} -f dset2:SHUF -l dset2:CHUNK=20x10) + ADD_H5_TEST (shuffle_individual "TEST" ${arg}) + +# shuffle for all + set (arg ${FILE4} -f SHUF) + ADD_H5_TEST (shuffle_all "TEST" ${arg}) + +# fletcher32 with individual object + set (arg ${FILE4} -f dset2:FLET -l dset2:CHUNK=20x10) + ADD_H5_TEST (fletcher_individual "TEST" ${arg}) + +# fletcher32 for all + set (arg ${FILE4} -f FLET) + ADD_H5_TEST (fletcher_all "TEST" ${arg}) + +# all filters + set (arg ${FILE4} -f dset2:SHUF -f dset2:FLET -f dset2:SZIP=8,NN -f dset2:GZIP=1 -l dset2:CHUNK=20x10) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_DEFLATE) + ADD_H5_TEST (all_filters ${TESTTYPE} ${arg}) + +# verbose gzip with individual object + set (arg ${FILE11} -v -f /dset_deflate:GZIP=9) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_CMP_TEST (gzip_verbose_filters "O?...ing file[^\n]+\n" ${TESTTYPE} 0 ${arg}) + +########################################################### +# the following tests assume the input files have filters +########################################################### + +# szip copy + set (arg ${FILE7}) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) + ADD_H5_TEST (szip_copy ${TESTTYPE} ${arg}) + +# szip remove + set (arg ${FILE7} --filter=dset_szip:NONE) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP) + ADD_H5_TEST (szip_remove ${TESTTYPE} ${arg}) + +# deflate copy + set (arg ${FILE8}) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_TEST (deflate_copy ${TESTTYPE} ${arg}) + +# deflate remove + set (arg ${FILE8} -f dset_deflate:NONE) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_TEST (deflate_remove ${TESTTYPE} ${arg}) + +# shuffle copy + set (arg ${FILE9}) + ADD_H5_TEST (shuffle_copy "TEST" ${arg}) + +# shuffle remove + set (arg ${FILE9} -f dset_shuffle:NONE) + ADD_H5_TEST (shuffle_remove "TEST" ${arg}) + +# fletcher32 copy + set (arg ${FILE10}) + ADD_H5_TEST (fletcher_copy "TEST" ${arg}) + +# fletcher32 remove + set (arg ${FILE10} -f dset_fletcher32:NONE) + ADD_H5_TEST (fletcher_remove "TEST" ${arg}) + +# nbit copy + set (arg ${FILE12}) + ADD_H5_TEST (nbit_copy "TEST" ${arg}) + +# nbit remove + set (arg ${FILE12} -f dset_nbit:NONE) + ADD_H5_TEST (nbit_remove "TEST" ${arg}) + +# nbit add + set (arg ${FILE12} -f dset_int31:NBIT) + ADD_H5_TEST (nbit_add "TEST" ${arg}) + +# scaleoffset copy + set (arg ${FILE13}) + ADD_H5_TEST (scale_copy "TEST" ${arg}) + +# scaleoffset add + set (arg ${FILE13} -f dset_none:SOFF=31,IN) + ADD_H5_TEST (scale_add "TEST" ${arg}) + +# scaleoffset remove + set (arg ${FILE13} -f dset_scaleoffset:NONE) + ADD_H5_TEST (scale_remove "TEST" ${arg}) + +# remove all filters + set (arg ${FILE11} -f NONE) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_SZIP_ENCODER) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_SZIP_ENCODER) + ADD_H5_TEST (remove_all ${TESTTYPE} ${arg}) + +#filter conversions + set (arg ${FILE8} -f dset_deflate:SZIP=8,NN) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_DEFLATE) + ADD_H5_TEST (deflate_convert ${TESTTYPE} ${arg}) + + set (arg ${FILE7} -f dset_szip:GZIP=1) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_SZIP OR NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_SZIP OR NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_DEFLATE) + ADD_H5_TEST (szip_convert ${TESTTYPE} ${arg}) + +#limit + set (arg ${FILE4} -f GZIP=1 -m 1024) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_DMP_TEST (deflate_limit ${TESTTYPE} 0 ${arg}) + +#file + set (arg ${FILE4} -e ${INFO_FILE}) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_TEST (deflate_file ${TESTTYPE} ${arg}) + +######################################################### +# layout options (these files have no filters) +######################################################### + ADD_H5_VERIFY_TEST (dset2_chunk_20x10 "TEST" 0 ${FILE4} dset2 CHUNKED --layout=dset2:CHUNK=20x10) + ADD_H5_VERIFY_TEST (chunk_20x10 "TEST" 1 ${FILE4} null CHUNKED -l CHUNK=20x10) + ADD_H5_VERIFY_TEST (dset2_conti "TEST" 0 ${FILE4} dset2 CONTIGUOUS -l dset2:CONTI) + ADD_H5_VERIFY_TEST (conti "TEST" 1 ${FILE4} null CONTIGUOUS -l CONTI) + ADD_H5_VERIFY_TEST (dset2_compa "TEST" 0 ${FILE4} dset2 COMPACT -l dset2:COMPA) + ADD_H5_VERIFY_TEST (compa "TEST" 1 ${FILE4} null COMPACT -l COMPA) + ADD_H5_MASK_TEST (dset2_chunk_20x10-errstk "TEST" 0 ${FILE4} --layout=dset2:CHUNK=20x10x5 --enable-error-stack) + +################################################################ +# layout conversions (file has no filters) +############################################################### + ADD_H5_VERIFY_TEST (dset_compa_conti "TEST" 0 ${FILE4} dset_compact CONTIGUOUS -l dset_compact:CONTI) + ADD_H5_VERIFY_TEST (dset_compa_chunk "TEST" 0 ${FILE4} dset_compact CHUNKED -l dset_compact:CHUNK=2x5) + ADD_H5_VERIFY_TEST (dset_compa_compa "TEST" 0 ${FILE4} dset_compact COMPACT -l dset_compact:COMPA) + ADD_H5_VERIFY_TEST (dset_conti_compa "TEST" 0 ${FILE4} dset_contiguous COMPACT -l dset_contiguous:COMPA) + ADD_H5_VERIFY_TEST (dset_conti_chunk "TEST" 0 ${FILE4} dset_contiguous CHUNKED -l dset_contiguous:CHUNK=3x6) + ADD_H5_VERIFY_TEST (dset_conti_conti "TEST" 0 ${FILE4} dset_contiguous CONTIGUOUS -l dset_contiguous:CONTI) + ADD_H5_VERIFY_TEST (chunk_compa "TEST" 0 ${FILE4} dset_chunk COMPACT -l dset_chunk:COMPA) + ADD_H5_VERIFY_TEST (chunk_conti "TEST" 0 ${FILE4} dset_chunk CONTIGUOUS -l dset_chunk:CONTI) + ADD_H5_VERIFY_TEST (chunk_18x13 "TEST" 0 ${FILE4} dset_chunk CHUNKED -l dset_chunk:CHUNK=18x13) + +# test convert small size dataset ( < 1k) to compact layout without -m + ADD_H5_VERIFY_TEST (contig_small_compa "TEST" 0 ${FILE18} contig_small COMPACT -l contig_small:COMPA) + ADD_H5_VERIFY_TEST (contig_small_fixed_compa "TEST" 0 ${FILE18} chunked_small_fixed COMPACT -l chunked_small_fixed:COMPA) + +#--------------------------------------------------------------------------- +# Test file contains chunked datasets (need multiple dsets) with +# unlimited max dims. (HDFFV-7933) +# Use first dset to test. +#--------------------------------------------------------------------------- +# chunk to chunk - specify chunk dim bigger than any current dim + ADD_H5_VERIFY_TEST (chunk2chunk "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:CHUNK=100x300) + +# chunk to contiguous + ADD_H5_VERIFY_TEST (chunk2conti "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CONTI -l chunk_unlimit1:CONTI) + +# chunk to compact - convert big dataset (should be > 64k) for this purpose, +# should remain as original layout (chunk) + ADD_H5_VERIFY_TEST (chunk2compa "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:COMPA) + +#-------------------------------------------------------------------------- +# Test -f for some specific cases. Chunked dataset with unlimited max dims. +# (HDFFV-8012) +#-------------------------------------------------------------------------- +# - should not fail +# - should not change max dims from unlimit + +# chunk dim is bigger than dataset dim. ( dset size < 64k ) + ADD_H5_VERIFY_TEST (error1 "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 H5S_UNLIMITED -f chunk_unlimit1:NONE) + +# chunk dim is bigger than dataset dim. ( dset size > 64k ) + ADD_H5_VERIFY_TEST (error2 "TEST" 0 h5repack_layout3.h5 chunk_unlimit2 H5S_UNLIMITED -f chunk_unlimit2:NONE) + +# chunk dims are smaller than dataset dims. ( dset size < 64k ) + ADD_H5_VERIFY_TEST (error3 "TEST" 0 h5repack_layout3.h5 chunk_unlimit3 H5S_UNLIMITED -f chunk_unlimit3:NONE) + +# file input - should not fail + ADD_H5_TEST (error4 "TEST" h5repack_layout3.h5 -f NONE) + +#-------------------------------------------------------------------------- +# Test base: Convert CHUNK to CONTI for a chunked dataset with small dataset +# (dset size < 64K) and with unlimited max dims on a condition as follow. +# (HDFFV-8214) +#-------------------------------------------------------------------------- +# chunk dim is bigger than dataset dim. should succeed. + ADD_H5_VERIFY_TEST (ckdim_biger "TEST" 0 h5repack_layout3.h5 chunk_unlimit2 CONTI -l chunk_unlimit2:CONTI) +# chunk dim is smaller than dataset dim. should succeed. + ADD_H5_VERIFY_TEST (ckdim_smaller "TEST" 0 h5repack_layout3.h5 chunk_unlimit3 CONTI -l chunk_unlimit3:CONTI) + + + +# Native option +# Do not use FILE1, as the named dtype will be converted to native, and h5diff will +# report a difference. + ADD_H5_TEST (native_fill "TEST" ${FILE0} -n) + ADD_H5_TEST (native_attr "TEST" ${FILE2} -n) + +# latest file format with long switches. use FILE4=h5repack_layout.h5 (no filters) + set (arg --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype]) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_VERIFY_TEST (layout_long_switches ${TESTTYPE} 1 ${FILE4} null CHUNKED ${arg}) + +# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters) + set (arg -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_VERIFY_TEST (layout_short_switches ${TESTTYPE} 1 ${FILE4} null CHUNKED ${arg}) + +# several global filters + set (arg ${FILE4} --filter GZIP=1 --filter SHUF) + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_TEST (global_filters ${TESTTYPE} ${arg}) + +# syntax of -i infile -o outfile +# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters) + set (arg ${FILE4} -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]) + set (TESTTYPE "LEGACY") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_TEST_OLD (old_style_layout_short_switches ${TESTTYPE} ${arg}) + +# add a userblock to file + set (arg ${FILE1} -u ${PROJECT_BINARY_DIR}/testfiles/ublock.bin -b 2048) + ADD_H5_TEST (add_userblock "TEST" ${arg}) + +# add alignment + set (arg ${FILE1} -t 1 -a 1) + ADD_H5_TEST (add_alignment "TEST" ${arg}) + +# Check repacking file with old version of layout message (should get upgraded +# to new version and be readable, etc.) + ADD_H5_TEST (upgrade_layout "TEST" ${FILE14}) + +# test for datum size > H5TOOLS_MALLOCSIZE + ADD_H5_TEST (gt_mallocsize "TEST" ${FILE1} -f GZIP=1) + +# Check repacking file with committed datatypes in odd configurations + ADD_H5_TEST (committed_dt "TEST" ${FILE15}) + +# tests family driver (file is located in common testfiles folder, uses TOOLTEST1 + ADD_H5_TEST (family "TEST" ${FILE16}) + +# test various references (bug 1814 and 1726) + ADD_H5_TEST (bug1814 "TEST" ${FILE_REF}) + +# test attribute with various references (bug1797 / HDFFV-5932) +# the references in attribute of compund or vlen datatype + ADD_H5_TEST (HDFFV-5932 "TEST" ${FILE_ATTR_REF}) + +# Add test for memory leak in attirbute. This test is verified by CTEST. +# 1. leak from vlen string +# 2. leak from compound type without reference member +# (HDFFV-7840, ) +# Note: this test is experimental for sharing test file among tools + ADD_H5_TEST (HDFFV-7840 "TEST" h5diff_attr1.h5) + +# tests for metadata block size option ('-M') + ADD_H5_TEST_META (meta_short h5repack_layout.h5 -M 8192) + ADD_H5_TEST_META (meta_long h5repack_layout.h5 --metadata_block_size=8192) + +# VDS tests + +################################################################ +# layout conversions +############################################################### + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_VERIFY_VDS (vds_dset_chunk20x10x5 ${TESTTYPE} 0 ${FILEV1} vds_dset CHUNKED -l vds_dset:CHUNK=20x10x5) + + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_VERIFY_VDS (vds_chunk2x5x8 ${TESTTYPE} 0 ${FILEV3_1} vds_dset CHUNKED -l vds_dset:CHUNK=2x5x8) + + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_VERIFY_VDS (vds_chunk3x6x9 ${TESTTYPE} 0 ${FILEV2} vds_dset CHUNKED -l vds_dset:CHUNK=3x6x9) + + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_VERIFY_VDS (vds_compa ${TESTTYPE} 0 ${FILEV4} vds_dset COMPACT -l vds_dset:COMPA) + + set (TESTTYPE "TEST") + if (NOT USE_FILTER_DEFLATE) + set (TESTTYPE "SKIP") + endif (NOT USE_FILTER_DEFLATE) + ADD_H5_VERIFY_VDS (vds_conti ${TESTTYPE} 0 ${FILEV4} vds_dset CONTIGUOUS -l vds_dset:CONTI) + +############################################################################## +### P L U G I N T E S T S +############################################################################## + ADD_H5_UD_TEST (plugin_version_test 0 h5repack_layout.h5 -v -f UD=260,4,9,1,9,235) + ADD_H5_UD_TEST (plugin_test 0 h5repack_layout.h5 -v -f UD=257,1,9) + ADD_H5_UD_TEST (plugin_none 0 h5repack_layout.UD.h5 -v -f NONE) + # check for no parameters + set (TESTRETVAL 255) + if (WIN32) + set (TESTRETVAL -1) + endif() + ADD_H5_CMP_TEST (plugin_zero "" "TEST" ${TESTRETVAL} h5repack_layout.h5 -v -f UD=250,0) + + if (HDF5_TEST_VFD) + # Run test with different Virtual File Driver + foreach (vfd ${VFD_LIST}) + ADD_VFD_TEST (${vfd} 0) + endforeach (vfd ${VFD_LIST}) + endif (HDF5_TEST_VFD) diff --git a/tools/test/h5repack/Makefile.am b/tools/test/h5repack/Makefile.am new file mode 100644 index 0000000..6c045c4 --- /dev/null +++ b/tools/test/h5repack/Makefile.am @@ -0,0 +1,67 @@ +# +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from help@hdfgroup.org. +## +## Makefile.am +## Run automake to generate a Makefile.in from this file. +# +# HDF5 Library Makefile(.in) +# + +include $(top_srcdir)/config/commence.am + +# Include src, test, and tools/lib directories +AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/test -I$(top_srcdir)/tools/lib -I$(top_srcdir)/tools/src/h5repack + +# Test programs and scripts +TEST_SCRIPT=h5repack.sh + +noinst_PROGRAMS=h5repacktst testh5repack_detect_szip + +SCRIPT_DEPEND=../../src/h5repack/h5repack$(EXEEXT) h5repacktst$(EXEEXT) +if HAVE_SHARED_CONDITIONAL +if USE_PLUGINS_CONDITIONAL + TEST_SCRIPT += h5repack_plugin.sh +endif +endif + +check_SCRIPTS=$(TEST_SCRIPT) + +# Depend on the hdf5 library, the tools library, the test library +LDADD=$(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5) + +testh5repack_detect_szip_SOURCES=testh5repack_detect_szip.c + +# Source files +COMMON_SOURCES=../../src/h5repack/h5repack.c ../../src/h5repack/h5repack_copy.c ../../src/h5repack/h5repack_filters.c \ + ../../src/h5repack/h5repack_opttable.c ../../src/h5repack/h5repack_parse.c ../../src/h5repack/h5repack_refs.c \ + ../../src/h5repack/h5repack_verify.c +h5repacktst_SOURCES=$(COMMON_SOURCES) h5repacktst.c + + +if HAVE_SHARED_CONDITIONAL + # Build it as shared library if configure is enabled for shared library. + lib_LTLIBRARIES=libdynlibadd.la libdynlibvers.la + libdynlibadd_la_SOURCES=dynlib_rpk.c + libdynlibvers_la_SOURCES=dynlib_vrpk.c + +install-exec-hook: + $(RM) $(DESTDIR)$(libdir)/*dynlib* +endif + +# Temporary files. *.h5 are generated by h5repack. They should +# copied to the testfiles/ directory if update is required. +CHECK_CLEANFILES+=*.h5 *.bin testfiles/h5diff_attr1.h5 testfiles/tfamily*.h5 +DISTCLEANFILES=h5repack.sh h5repack_plugin.sh + +include $(top_srcdir)/config/conclude.am diff --git a/tools/test/h5repack/dynlib_rpk.c b/tools/test/h5repack/dynlib_rpk.c new file mode 100644 index 0000000..3469e58 --- /dev/null +++ b/tools/test/h5repack/dynlib_rpk.c @@ -0,0 +1,97 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the files COPYING and Copyright.html. COPYING can be found at the root * + * of the source code distribution tree; Copyright.html can be found at the * + * root level of an installed copy of the electronic document set and is * + * linked from the top-level documents page. It can also be found at * + * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have access * + * to either file, you may request a copy from help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ +/* + * Programmer: Raymond Lu + * 13 February 2013 + * + * Purpose: Tests the plugin module (H5PL) + */ + +#include <stdlib.h> +#include <stdio.h> +#include "H5PLextern.h" + +#define H5Z_FILTER_DYNLIB1 257 + +static size_t H5Z_filter_dynlib1(unsigned int flags, size_t cd_nelmts, + const unsigned int *cd_values, size_t nbytes, size_t *buf_size, void **buf); + +/* This message derives from H5Z */ +const H5Z_class2_t H5Z_DYNLIB1[1] = {{ + H5Z_CLASS_T_VERS, /* H5Z_class_t version */ + H5Z_FILTER_DYNLIB1, /* Filter id number */ + 1, 1, /* Encoding and decoding enabled */ + "dynlib1", /* Filter name for debugging */ + NULL, /* The "can apply" callback */ + NULL, /* The "set local" callback */ + (H5Z_func_t)H5Z_filter_dynlib1, /* The actual filter function */ +}}; + +H5PL_type_t H5PLget_plugin_type(void) {return H5PL_TYPE_FILTER;} +const void *H5PLget_plugin_info(void) {return H5Z_DYNLIB1;} + +/*------------------------------------------------------------------------- + * Function: H5Z_filter_dynlib1 + * + * Purpose: A dynlib1 filter method that adds on and subtract from + * the original value with another value. It will be built + * as a shared library. plugin.c test will load and use + * this filter library. + * + * Return: Success: Data chunk size + * + * Failure: 0 + * + * Programmer: Raymond Lu + * 29 March 2013 + * + *------------------------------------------------------------------------- + */ +static size_t +H5Z_filter_dynlib1(unsigned int flags, size_t cd_nelmts, + const unsigned int *cd_values, size_t nbytes, + size_t *buf_size, void **buf) +{ + int *int_ptr = (int *)*buf; /* Pointer to the data values */ + size_t buf_left = *buf_size; /* Amount of data buffer left to process */ + int add_on = 0; + + /* Check for the correct number of parameters */ + if(cd_nelmts == 0) + return 0; + + /* Check that permanent parameters are set correctly */ + if(cd_values[0] > 9) + return 0; + + add_on = (int)cd_values[0]; + + if(flags & H5Z_FLAG_REVERSE) { /*read*/ + /* Substract the "add on" value to all the data values */ + while(buf_left > 0) { + *int_ptr++ -= add_on; + buf_left -= sizeof(int); + } /* end while */ + } /* end if */ + else { /*write*/ + /* Add the "add on" value to all the data values */ + while(buf_left > 0) { + *int_ptr++ += add_on; + buf_left -= sizeof(int); + } /* end while */ + } /* end else */ + + return nbytes; +} /* end H5Z_filter_dynlib1() */ + diff --git a/tools/test/h5repack/dynlib_vrpk.c b/tools/test/h5repack/dynlib_vrpk.c new file mode 100644 index 0000000..8da0270 --- /dev/null +++ b/tools/test/h5repack/dynlib_vrpk.c @@ -0,0 +1,104 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the files COPYING and Copyright.html. COPYING can be found at the root * + * of the source code distribution tree; Copyright.html can be found at the * + * root level of an installed copy of the electronic document set and is * + * linked from the top-level documents page. It can also be found at * + * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have access * + * to either file, you may request a copy from help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ +/* + * Purpose: Tests the plugin module (H5PL) + */ + +#include <stdlib.h> +#include <stdio.h> +#include "H5PLextern.h" + +#define H5Z_FILTER_DYNLIB4 260 + +#define PUSH_ERR(func, minor, str) H5Epush2(H5E_DEFAULT, __FILE__, func, __LINE__, H5E_ERR_CLS, H5E_PLUGIN, minor, str) + +static size_t H5Z_filter_dynlib4(unsigned int flags, size_t cd_nelmts, + const unsigned int *cd_values, size_t nbytes, size_t *buf_size, void **buf); + +/* This message derives from H5Z */ +const H5Z_class2_t H5Z_DYNLIB4[1] = {{ + H5Z_CLASS_T_VERS, /* H5Z_class_t version */ + H5Z_FILTER_DYNLIB4, /* Filter id number */ + 1, 1, /* Encoding and decoding enabled */ + "dynlib4", /* Filter name for debugging */ + NULL, /* The "can apply" callback */ + NULL, /* The "set local" callback */ + (H5Z_func_t)H5Z_filter_dynlib4, /* The actual filter function */ +}}; + +H5PL_type_t H5PLget_plugin_type(void) {return H5PL_TYPE_FILTER;} +const void *H5PLget_plugin_info(void) {return H5Z_DYNLIB4;} + +/*------------------------------------------------------------------------- + * Function: H5Z_filter_dynlib4 + * + * Purpose: A dynlib4 filter method that adds on and subtract from + * the original value with another value. It will be built + * as a shared library. plugin.c test will load and use + * this filter library. Designed to call a HDF function. + * + * Return: Success: Data chunk size + * + * Failure: 0 + * + *------------------------------------------------------------------------- + */ +static size_t +H5Z_filter_dynlib4(unsigned int flags, size_t cd_nelmts, + const unsigned int *cd_values, size_t nbytes, + size_t *buf_size, void **buf) +{ + int *int_ptr = (int *)*buf; /* Pointer to the data values */ + size_t buf_left = *buf_size; /* Amount of data buffer left to process */ + int add_on = 0; + unsigned ver_info[3]; + + /* Check for the library version */ + if(H5get_libversion(&ver_info[0], &ver_info[1], &ver_info[2]) < 0) { + PUSH_ERR("dynlib4", H5E_CALLBACK, "H5get_libversion"); + return(0); + } + /* Check for the correct number of parameters */ + if(cd_nelmts == 0) + return(0); + + /* Check that permanent parameters are set correctly */ + if(cd_values[0] > 9) + return(0); + + if(ver_info[0] != cd_values[1] || ver_info[1] != cd_values[2]) { + PUSH_ERR("dynlib4", H5E_CALLBACK, "H5get_libversion does not match"); + return(0); + } + + add_on = (int)cd_values[0]; + + if(flags & H5Z_FLAG_REVERSE) { /*read*/ + /* Substract the "add on" value to all the data values */ + while(buf_left > 0) { + *int_ptr++ -= add_on; + buf_left -= sizeof(int); + } /* end while */ + } /* end if */ + else { /*write*/ + /* Add the "add on" value to all the data values */ + while(buf_left > 0) { + *int_ptr++ += add_on; + buf_left -= sizeof(int); + } /* end while */ + } /* end else */ + + return nbytes; +} /* end H5Z_filter_dynlib4() */ + diff --git a/tools/test/h5repack/h5repack.sh.in b/tools/test/h5repack/h5repack.sh.in new file mode 100644 index 0000000..4d3cae8 --- /dev/null +++ b/tools/test/h5repack/h5repack.sh.in @@ -0,0 +1,1265 @@ +#! /bin/sh +# +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from help@hdfgroup.org. +# +# Tests for the h5repack tool +# +# Modification: +# Pedro Vicente Nunes, 11/15/2006 +# Added $FILEN variables for file names +# + +srcdir=@srcdir@ + +USE_FILTER_SZIP="@USE_FILTER_SZIP@" +USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" + +TESTNAME=h5repack +EXIT_SUCCESS=0 +EXIT_FAILURE=1 + +H5REPACK=../../src/h5repack/h5repack # The tool name +H5REPACK_BIN=`pwd`/$H5REPACK # The path of the tool binary + +H5DIFF=../../src/h5diff/h5diff # The h5diff tool name +H5DIFF_BIN=`pwd`/$H5DIFF # The path of the h5diff tool binary + +H5DUMP=../../src/h5dump/h5dump # The h5dump tool name +H5DUMP_BIN=`pwd`/$H5DUMP # The path of the h5dump tool binary + +RM='rm -rf' +CMP='cmp' +DIFF='diff -c' +GREP='grep' +CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' + +H5DETECTSZIP=testh5repack_detect_szip +H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP + + +nerrors=0 +verbose=yes + +# source dirs +SRC_TOOLS="$srcdir/../.." +SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles" + +# testfiles source dirs for tools +SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES" +SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES" +SRC_H5DIFF_TESTFILES="$SRC_TOOLS/test/h5diff/testfiles" +SRC_H5COPY_TESTFILES="$SRC_TOOLS/test/h5copy/testfiles" +SRC_H5REPACK_TESTFILES="$SRC_TOOLS/test/h5repack/testfiles" +SRC_H5JAM_TESTFILES="$SRC_TOOLS/test/h5jam/testfiles" +SRC_H5STAT_TESTFILES="$SRC_TOOLS/test/h5stat/testfiles" +SRC_H5IMPORT_TESTFILES="$SRC_TOOLS/test/h5import/testfiles" + +TESTDIR=./testpack +test -d $TESTDIR || mkdir $TESTDIR + +###################################################################### +# test files +# -------------------------------------------------------------------- +# All the test files copy from source directory to test directory +# NOTE: Keep this framework to add/remove test files. +# Any test files from other tools can be used in this framework. +# This list are also used for checking exist. +# Comment '#' without space can be used. +# -------------------------------------------------------------------- +LIST_HDF5_TEST_FILES=" +$SRC_H5REPACK_TESTFILES/h5repack_attr.h5 +$SRC_H5REPACK_TESTFILES/h5repack_attr_refs.h5 +$SRC_H5REPACK_TESTFILES/h5repack_deflate.h5 +$SRC_H5REPACK_TESTFILES/h5repack_early.h5 +$SRC_H5REPACK_TESTFILES/h5repack_ext.h5 +$SRC_H5REPACK_TESTFILES/h5repack_fill.h5 +$SRC_H5REPACK_TESTFILES/h5repack_filters.h5 +$SRC_H5REPACK_TESTFILES/h5repack_fletcher.h5 +$SRC_H5REPACK_TESTFILES/h5repack_hlink.h5 +$SRC_H5REPACK_TESTFILES/h5repack_layout.h5 +$SRC_H5REPACK_TESTFILES/h5repack_layouto.h5 +$SRC_H5REPACK_TESTFILES/h5repack_layout2.h5 +$SRC_H5REPACK_TESTFILES/h5repack_layout3.h5 +$SRC_H5REPACK_TESTFILES/h5repack_named_dtypes.h5 +$SRC_H5REPACK_TESTFILES/h5repack_nested_8bit_enum.h5 +$SRC_H5REPACK_TESTFILES/h5repack_nested_8bit_enum_deflated.h5 +$SRC_H5REPACK_TESTFILES/h5repack_nbit.h5 +$SRC_H5REPACK_TESTFILES/h5repack_objs.h5 +$SRC_H5REPACK_TESTFILES/h5repack_refs.h5 +$SRC_H5REPACK_TESTFILES/h5repack_shuffle.h5 +$SRC_H5REPACK_TESTFILES/h5repack_soffset.h5 +$SRC_H5REPACK_TESTFILES/h5repack_szip.h5 +$SRC_H5DIFF_TESTFILES/h5diff_attr1.h5 +$SRC_TOOLS_TESTFILES/tfamily00000.h5 +$SRC_TOOLS_TESTFILES/tfamily00001.h5 +$SRC_TOOLS_TESTFILES/tfamily00002.h5 +$SRC_TOOLS_TESTFILES/tfamily00003.h5 +$SRC_TOOLS_TESTFILES/tfamily00004.h5 +$SRC_TOOLS_TESTFILES/tfamily00005.h5 +$SRC_TOOLS_TESTFILES/tfamily00006.h5 +$SRC_TOOLS_TESTFILES/tfamily00007.h5 +$SRC_TOOLS_TESTFILES/tfamily00008.h5 +$SRC_TOOLS_TESTFILES/tfamily00009.h5 +$SRC_TOOLS_TESTFILES/tfamily00010.h5 +$SRC_TOOLS_TESTFILES/vds/1_a.h5 +$SRC_TOOLS_TESTFILES/vds/1_b.h5 +$SRC_TOOLS_TESTFILES/vds/1_c.h5 +$SRC_TOOLS_TESTFILES/vds/1_d.h5 +$SRC_TOOLS_TESTFILES/vds/1_e.h5 +$SRC_TOOLS_TESTFILES/vds/1_f.h5 +$SRC_TOOLS_TESTFILES/vds/1_vds.h5 +$SRC_TOOLS_TESTFILES/vds/2_a.h5 +$SRC_TOOLS_TESTFILES/vds/2_b.h5 +$SRC_TOOLS_TESTFILES/vds/2_c.h5 +$SRC_TOOLS_TESTFILES/vds/2_d.h5 +$SRC_TOOLS_TESTFILES/vds/2_e.h5 +$SRC_TOOLS_TESTFILES/vds/2_vds.h5 +$SRC_TOOLS_TESTFILES/vds/3_1_vds.h5 +$SRC_TOOLS_TESTFILES/vds/3_2_vds.h5 +$SRC_TOOLS_TESTFILES/vds/4_0.h5 +$SRC_TOOLS_TESTFILES/vds/4_1.h5 +$SRC_TOOLS_TESTFILES/vds/4_2.h5 +$SRC_TOOLS_TESTFILES/vds/4_vds.h5 +$SRC_TOOLS_TESTFILES/vds/5_a.h5 +$SRC_TOOLS_TESTFILES/vds/5_b.h5 +$SRC_TOOLS_TESTFILES/vds/5_c.h5 +$SRC_TOOLS_TESTFILES/vds/5_vds.h5 +" + +LIST_OTHER_TEST_FILES=" +$SRC_H5REPACK_TESTFILES/h5repack-help.txt +$SRC_H5REPACK_TESTFILES/h5repack_ext.bin +$SRC_H5REPACK_TESTFILES/ublock.bin +$SRC_H5REPACK_TESTFILES/h5repack.info +$SRC_H5REPACK_TESTFILES/deflate_limit.h5repack_layout.h5.ddl +$SRC_H5REPACK_TESTFILES/h5repack_layout.h5.ddl +$SRC_H5REPACK_TESTFILES/h5repack_filters.h5-gzip_verbose_filters.tst +$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst +$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-plugin_test.ddl +$SRC_H5REPACK_TESTFILES/plugin_test.h5repack_layout.h5.tst +$SRC_H5REPACK_TESTFILES/1_vds.h5-vds_dset_chunk20x10x5-v.ddl +$SRC_H5REPACK_TESTFILES/2_vds.h5-vds_chunk3x6x9-v.ddl +$SRC_H5REPACK_TESTFILES/3_1_vds.h5-vds_chunk2x5x8-v.ddl +$SRC_H5REPACK_TESTFILES/4_vds.h5-vds_compa-v.ddl +$SRC_H5REPACK_TESTFILES/4_vds.h5-vds_conti-v.ddl +" + +# +# copy test files and expected output files from source dirs to test dir +# +COPY_TESTFILES="$LIST_HDF5_TEST_FILES $LIST_OTHER_TEST_FILES" + +COPY_TESTFILES_TO_TESTDIR() +{ + # copy test files. Used -f to make sure get a new copy + for tstfile in $COPY_TESTFILES + do + # ignore '#' comment + echo $tstfile | tr -d ' ' | grep '^#' > /dev/null + RET=$? + if [ $RET -eq 1 ]; then + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi + fi + fi + done +} + +CLEAN_TESTFILES_AND_TESTDIR() +{ + # skip rm if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=$SRC_H5REPACK_TESTFILES + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $RM $TESTDIR + fi +} + +# Print a $* message left justified in a field of 70 characters +# +MESSAGE() { + SPACES=" " + echo "$* $SPACES" | cut -c1-70 | tr -d '\012' +} + +# Print a line-line message left justified in a field of 70 characters +# beginning with the word "Testing". +# +TESTING() { + MESSAGE "Testing $*" +} + +# Print a line-line message left justified in a field of 70 characters +# beginning with the word "Verifying". +# +VERIFY() { + MESSAGE "Verifying $*" +} + +# Print a message that a test has been skipped (because a required filter +# was unavailable) +SKIP() { + TESTING $H5REPACK $@ + echo " -SKIP-" +} + +# Call the h5diff tool +# +DIFFTEST() +{ + VERIFY h5diff output $@ + ( + cd $TESTDIR + $RUNSERIAL $H5DIFF_BIN -q "$@" + ) + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + fi + +} + +# Call h5repack +# + + +# call TOOLTEST_MAIN and delete $output file +TOOLTEST() +{ + echo $@ + infile=$2 + outfile=out-$1.$2 + shift + shift + + # Run test. + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + DIFFTEST $infile $outfile + fi + rm -f $outfile +} + +#------------------------------------------ +# Verifying layouts of a dataset +VERIFY_LAYOUT_DSET() +{ + layoutfile=layout-$1.$2 + dset=$3 + expectlayout=$4 + infile=$2 + outfile=out-$1.$2 + shift + shift + shift + shift + + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + DIFFTEST $infile $outfile + fi + + #--------------------------------- + # check the layout from a dataset + VERIFY "a dataset layout" + ( + cd $TESTDIR + $RUNSERIAL $H5DUMP_BIN -d $dset -pH $outfile > $layoutfile + ) + $GREP $expectlayout $TESTDIR/$layoutfile > /dev/null + if [ $? -eq 0 ]; then + echo " PASSED" + else + echo " FAILED" + nerrors="`expr $nerrors + 1`" + fi + + # clean up tmp files + rm -f $outfile + rm -f $layoutfile +} + +#------------------------------------------ +# Verifying layouts of a dataset +VERIFY_LAYOUT_VDS() +{ + layoutfile=layout-$1.$2 + dset=$3 + expectlayout=$4 + infile=$2 + outfile=out-$1.$2 + + expect="$TESTDIR/$2-$1-v.ddl" + actual="$TESTDIR/$2-$1-v.out" + actual_err="$TESTDIR/$2-$1-v.err" + + shift + shift + shift + shift + + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + fi + + #--------------------------------- + # check the layout from a dataset + VERIFY "a dataset layout" + ( + cd $TESTDIR + $RUNSERIAL $H5DUMP_BIN -d $dset -p $outfile + ) >$actual 2>$actual_err + + cat $actual_err >> $actual + + if [ ! -f $expect ]; then + # Create the expect file if it doesn't yet exist. + echo " CREATED" + cp $actual $expect + elif $CMP $expect $actual > /dev/null 2>&1 ; then + echo " PASSED" + else + echo "*FAILED*" + echo " Expected result (*.ddl) differs from actual result (*.out)" + nerrors="`expr $nerrors + 1`" + test yes = "$verbose" && $DIFF $caseless $expect $actual |sed 's/^/ /' + fi + + # Clean up output file + if test -z "$HDF5_NOCLEANUP"; then + rm -f $actual $actual_err + fi + + # clean up tmp files + rm -f $outfile +} + +#---------------------------------------- +# Verifying layouts from entire file +VERIFY_LAYOUT_ALL() +{ + infile=$2 + outfile=out-$1.$2 + layoutfile=layout-$1.$2 + expectlayout=$3 + shift + shift + shift + + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + DIFFTEST $infile $outfile + fi + + + #--------------------------------- + # check the layout from a dataset + # check if the other layouts still exsit + VERIFY "layouts" + ( + cd $TESTDIR + echo + # if CONTIGUOUS + if [ $expectlayout = "CONTIGUOUS" ]; then + TESTING $H5DUMP_BIN -pH $outfile + ( + $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile + ) + $GREP "COMPACT" $layoutfile > /dev/null + if [ $? -eq 0 ]; then + echo " FAILED" + nerrors="`expr $nerrors + 1`" + else + $GREP "CHUNKED" $layoutfile > /dev/null + if [ $? -eq 0 ]; then + echo " FAILED" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + fi + fi + else + # if COMPACT + if [ $expectlayout = "COMPACT" ]; then + TESTING $H5DUMP_BIN -pH $outfile + ( + $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile + ) + $GREP "CHUNKED" $layoutfile > /dev/null + if [ $? -eq 0 ]; then + echo " FAILED" + nerrors="`expr $nerrors + 1`" + else + $GREP "CONTIGUOUS" $layoutfile > /dev/null + if [ $? -eq 0 ]; then + echo " FAILED" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + fi + fi + else + # if CHUNKED + if [ $expectlayout = "CHUNKED" ]; then + TESTING $H5DUMP_BIN -pH $outfile + ( + $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile + ) + $GREP "CONTIGUOUS" $layoutfile > /dev/null + if [ $? -eq 0 ]; then + echo " FAILED" + nerrors="`expr $nerrors + 1`" + else + $GREP "COMPACT" $layoutfile > /dev/null + if [ $? -eq 0 ]; then + echo " FAILED" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + fi + fi + fi + fi + fi + ) + + # clean up tmp files + rm -f $outfile + rm -f $layoutfile +} + +# same as TOOLTEST, but it uses the old syntax -i input_file -o output_file +# +TOOLTEST0() +{ + infile=$2 + outfile=out-$1.$2 + shift + shift + + # Run test. + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN -i $infile -o $outfile "$@" + ) + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + DIFFTEST $infile $outfile + fi + rm -f $outfile +} + + +# same as TOOLTEST, but it uses without -i -o options +# used to test the family driver, where these files reside +# +TOOLTEST1() +{ + infile=$2 + outfile=out-$1.$2 + shift + shift + + # Run test. + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + DIFFTEST $infile $outfile + fi + rm -f $outfile +} + +# This is same as TOOLTEST() with comparing display output +# from -v option +# +TOOLTESTV() +{ + expect="$TESTDIR/$2-$1.tst" + actual="$TESTDIR/`basename $2 .ddl`.out" + actual_err="$TESTDIR/`basename $2 .ddl`.err" + + infile=$2 + outfile=out-$1.$2 + shift + shift + + # Run test. + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) >$actual 2>$actual_err + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + DIFFTEST $infile $outfile + fi + + # display output compare + STDOUT_FILTER $actual + cat $actual_err >> $actual + + VERIFY output from $H5REPACK $@ + if cmp -s $expect $actual; then + echo " PASSED" + else + echo "*FAILED*" + echo " Expected result (*.tst) differs from actual result (*.out)" + nerrors="`expr $nerrors + 1`" + test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /' + fi + + rm -f $actual $actual_err + rm -f $outfile +} + +# same as TOOLTESTV but filters error stack output and compares to an error file +# Extract file name, line number, version and thread IDs because they may be different +# ADD_H5ERR_MASK_TEST +TOOLTESTM() { + + expect="$TESTDIR/$2-$1.tst" + actual="$TESTDIR/`basename $2 .tst`.out" + actual_err="$TESTDIR/`basename $2 .tst`.oerr" + actual_sav=${actual}-sav + actual_err_sav=${actual_err}-sav + + infile=$2 + outfile=out-$1.$2 + shift + shift + + # Run test. + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) >$actual 2>$actual_err + + # save actual and actual_err in case they are needed later. + cp $actual $actual_sav + cp $actual_err $actual_err_sav + + # Extract file name, line number, version and thread IDs because they may be different + sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \ + -e 's/line [0-9]*/line (number)/' \ + -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \ + -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \ + -e 's/H5Eget_auto[1-2]*/H5Eget_auto(1 or 2)/' \ + -e 's/H5Eset_auto[1-2]*/H5Eset_auto(1 or 2)/' \ + $actual_err > $actual + + if [ ! -f $expect ]; then + # Create the expect file if it doesn't yet exist. + echo " CREATED" + cp $actual $expect + elif $CMP $expect $actual; then + echo " PASSED" + else + echo "*FAILED*" + echo " Expected result (*.tst) differs from actual result (*.out)" + nerrors="`expr $nerrors + 1`" + test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /' + fi + + # Clean up output file + if test -z "$HDF5_NOCLEANUP"; then + rm -f $actual $actual_err $actual_sav $actual_err_sav + fi + +} + +# This is same as TOOLTESTV() with comparing h5dump output +# from -pH option +# +TOOLTEST_DUMP() +{ + infile=$2 + outfile=out-$1.$2 + expect="$TESTDIR/$1.$2.ddl" + actual="$TESTDIR/out-$1.$2.out" + actual_err="$TESTDIR/out-$1.$2.err" + + shift + shift + + # Run test. + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) >$actual 2>$actual_err + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + VERIFY h5dump output $@ + ( + cd $TESTDIR + $RUNSERIAL $H5DUMP_BIN -pH $outfile + ) >$actual 2>$actual_err + cat $actual_err >> $actual + + RET=$? + + fi + + if cmp -s $expect $actual; then + echo " PASSED" + else + echo "*FAILED*" + echo " Expected result (*.ddl) differs from actual result (*.out)" + nerrors="`expr $nerrors + 1`" + test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /' + fi + + rm -f $actual $actual_err + rm -f $outfile +} + +# TOOLTEST_META: +# Test metadata block size option. +# Reason to create a function here is to localize all special steps related to +# metadata block size option in one place. This is a quick solution. More +# thought out solution needed when there is more time. +# +# $1: test input file +# $2:$: metadata options (either "-M size" or "--metadata_block_size=size") +# +# Algorithm: +# Run it once without the metadata option ($2-$); +# Save the result output file; +# Run it second time with the metadata option; +# Verify the output file of second run is larger than the one of 1st run. +TOOLTEST_META() +{ + infile=$2 + outfile=out-$1.$2 + shift + shift + + # Run test. + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN $infile $outfile + ) + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + DIFFTEST $infile $outfile + fi + # get the size of the first output file + size1=`wc -c $TESTDIR/$outfile | cut -d' ' -f1` + + # 2nd run with metadata option + # Run test. + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile + ) + RET=$? + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + DIFFTEST $infile $outfile + fi + # get the size of the second output file + size2=`wc -c $TESTDIR/$outfile | cut -d' ' -f1` + + # verify sizes. + MESSAGE "Verify the sizes of both output files ($size1 vs $size2)" + if [ $size1 -lt $size2 ]; then + # pass + echo " PASSED" + else + #fail + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + fi + + rm -f $outfile +} + +# ADD_HELP_TEST +TOOLTEST_HELP() { + + expect="$TESTDIR/$1" + actual="$TESTDIR/`basename $1 .txt`.out" + actual_err="$TESTDIR/`basename $1 .txt`.err" + shift + + # Run test. + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN "$@" + ) >$actual 2>$actual_err + cat $actual_err >> $actual + + if [ ! -f $expect ]; then + # Create the expect data file if it doesn't yet exist. + echo " CREATED" + cp $actual $expect-CREATED + elif cmp -s $expect $actual; then + echo " PASSED" + else + echo "*FAILED*" + echo " Expected output (*.txt) differs from actual output (*.out)" + nerrors="`expr $nerrors + 1`" + fi + + # Clean up output file + if test -z "$HDF5_NOCLEANUP"; then + rm -f $actual $actual_err + fi + +} + +# This is different from $srcdir/../../../bin/output_filter.sh +STDOUT_FILTER() { + result_file=$1 + tmp_file=/tmp/h5test_tmp_$$ + # Filter name of files. + cp $result_file $tmp_file + sed -e '/^Opening file/d' -e '/^Making file/d' \ + < $tmp_file > $result_file + # cleanup + rm -f $tmp_file +} + +# +# The tests +# We use the files generated by h5repacktst +# Each run generates "<file>.out.h5" and the tool h5diff is used to +# compare the input and output files +# +# the tests are the same as the program h5repacktst, but run from the CLI +# + +# See which filters are usable (and skip tests for filters we +# don't have). Do this by searching H5pubconf.h to see which +# filters are defined. + +# detect whether the encoder is present. +USE_FILTER_SZIP_ENCODER="no"; +if test $USE_FILTER_SZIP = "yes"; then +USE_FILTER_SZIP_ENCODER=`$RUNSERIAL $H5DETECTSZIP_BIN` +fi + +############################################################################## +### T H E T E S T S +############################################################################## +# prepare for test +COPY_TESTFILES_TO_TESTDIR + +TOOLTEST_HELP h5repack-help.txt -h + +# copy files (these files have no filters) +TOOLTEST fill h5repack_fill.h5 +TOOLTEST objs h5repack_objs.h5 +TOOLTEST attr h5repack_attr.h5 +TOOLTEST hlink h5repack_hlink.h5 +TOOLTEST layout h5repack_layout.h5 +TOOLTEST early h5repack_early.h5 + +# nested 8bit enum in both deflated and non-deflated datafiles +if [ $USE_FILTER_DEFLATE != "yes" ]; then +TOOLTEST nested_8bit_enum h5repack_nested_8bit_enum.h5 +else +TOOLTEST nested_8bit_enum h5repack_nested_8bit_enum_deflated.h5 +fi + +# use h5repack_layout.h5 to write some filters (this file has no filters) + +# gzip with individual object +arg="h5repack_layout.h5 -f dset1:GZIP=1 -l dset1:CHUNK=20x10" +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP $arg +else + TOOLTEST gzip_individual $arg +fi + +# gzip for all +arg="h5repack_layout.h5 -f GZIP=1" +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP $arg +else + TOOLTEST gzip_all $arg +fi + +# szip with individual object +arg="h5repack_layout.h5 -f dset2:SZIP=8,EC -l dset2:CHUNK=20x10" +if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then + SKIP $arg +else + TOOLTEST szip_individual $arg +fi + +# szip for all +arg="h5repack_layout.h5 -f SZIP=8,NN" +if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then + SKIP $arg +else + TOOLTEST szip_all $arg +fi + +# shuffle with individual object +arg="h5repack_layout.h5 -f dset2:SHUF -l dset2:CHUNK=20x10" +TOOLTEST shuffle_individual $arg + + +# shuffle for all +arg="h5repack_layout.h5 -f SHUF" +TOOLTEST shuffle_all $arg + +# fletcher32 with individual object +arg="h5repack_layout.h5 -f dset2:FLET -l dset2:CHUNK=20x10" +TOOLTEST fletcher_individual $arg + +# fletcher32 for all +arg="h5repack_layout.h5 -f FLET" +TOOLTEST fletcher_all $arg + +# all filters +arg="h5repack_layout.h5 -f dset2:SHUF -f dset2:FLET -f dset2:SZIP=8,NN -f dset2:GZIP=1 -l dset2:CHUNK=20x10" +if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then + SKIP $arg +else + TOOLTEST all_filters $arg +fi + +# verbose gzip with individual object +arg="h5repack_filters.h5 -v -f /dset_deflate:GZIP=9" +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP $arg +else + # compare output + TOOLTESTV gzip_verbose_filters $arg +fi + +########################################################### +# the following tests assume the input files have filters +########################################################### + +# szip copy +arg="h5repack_szip.h5" +if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then + SKIP $arg +else + TOOLTEST szip_copy $arg +fi + +# szip remove +arg="h5repack_szip.h5 --filter=dset_szip:NONE" +if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then + SKIP $arg +else + TOOLTEST szip_remove $arg +fi + +# deflate copy +arg="h5repack_deflate.h5" +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP $arg +else + TOOLTEST deflate_copy $arg +fi + +# deflate remove +arg="h5repack_deflate.h5 -f dset_deflate:NONE" +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP $arg +else + TOOLTEST deflate_remove $arg +fi + +# shuffle copy +arg="h5repack_shuffle.h5" +TOOLTEST shuffle_copy $arg + +# shuffle remove +arg="h5repack_shuffle.h5 -f dset_shuffle:NONE" +TOOLTEST shuffle_remove $arg + +# fletcher32 copy +arg="h5repack_fletcher.h5" +TOOLTEST fletcher_copy $arg + +# fletcher32 remove +arg="h5repack_fletcher.h5 -f dset_fletcher32:NONE" +TOOLTEST fletcher_remove $arg + +# nbit copy +arg="h5repack_nbit.h5" +TOOLTEST nbit_copy $arg + +# nbit remove +arg="h5repack_nbit.h5 -f dset_nbit:NONE" +TOOLTEST nbit_remove $arg + +# nbit add +arg="h5repack_nbit.h5 -f dset_int31:NBIT" +TOOLTEST nbit_add $arg + +# scaleoffset copy +arg="h5repack_soffset.h5" +TOOLTEST scale_copy $arg + +# scaleoffset add +arg="h5repack_soffset.h5 -f dset_none:SOFF=31,IN" +TOOLTEST scale_add $arg + +# scaleoffset remove +arg="h5repack_soffset.h5 -f dset_scaleoffset:NONE" +TOOLTEST scale_remove $arg + +# remove all filters +arg="h5repack_filters.h5 -f NONE" +if test $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" ; then + SKIP $arg +else + TOOLTEST remove_all $arg +fi + +#filter conversions + +arg="h5repack_deflate.h5 -f dset_deflate:SZIP=8,NN" +if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then + SKIP $arg +else + TOOLTEST deflate_convert $arg +fi + +arg="h5repack_szip.h5 -f dset_szip:GZIP=1" +if test $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then + SKIP $arg +else + TOOLTEST szip_convert $arg +fi + + +#limit +arg="h5repack_layout.h5 -f GZIP=1 -m 1024" +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP $arg +else + TOOLTEST_DUMP deflate_limit $arg +fi + +#file +arg="h5repack_layout.h5 -e h5repack.info" +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP $arg +else + TOOLTEST deflate_file $arg +fi + +######################################################### +# layout options (these files have no filters) +######################################################### +VERIFY_LAYOUT_DSET dset2_chunk_20x10 h5repack_layout.h5 dset2 CHUNKED --layout dset2:CHUNK=20x10 + +VERIFY_LAYOUT_ALL chunk_20x10 h5repack_layout.h5 CHUNKED -l CHUNK=20x10 + +VERIFY_LAYOUT_DSET dset2_conti h5repack_layout.h5 dset2 CONTIGUOUS -l dset2:CONTI + +VERIFY_LAYOUT_ALL conti h5repack_layout.h5 CONTIGUOUS -l CONTI + +VERIFY_LAYOUT_DSET dset2_compa h5repack_layout.h5 dset2 COMPACT -l dset2:COMPA + +VERIFY_LAYOUT_ALL compa h5repack_layout.h5 COMPACT -l COMPA + +TOOLTESTM dset2_chunk_20x10-errstk h5repack_layout.h5 --layout=dset2:CHUNK=20x10x5 --enable-error-stack + +################################################################ +# layout conversions (file has no filters) +############################################################### + +VERIFY_LAYOUT_DSET dset_compa_conti h5repack_layout.h5 dset_compact CONTIGUOUS -l dset_compact:CONTI + +VERIFY_LAYOUT_DSET dset_compa_chunk h5repack_layout.h5 dset_compact CHUNKED -l dset_compact:CHUNK=2x5 + +VERIFY_LAYOUT_DSET dset_compa_compa h5repack_layout.h5 dset_compact COMPACT -l dset_compact:COMPA + +VERIFY_LAYOUT_DSET dset_conti_compa h5repack_layout.h5 dset_contiguous COMPACT -l dset_contiguous:COMPA + +VERIFY_LAYOUT_DSET dset_conti_chunk h5repack_layout.h5 dset_contiguous CHUNKED -l dset_contiguous:CHUNK=3x6 + +VERIFY_LAYOUT_DSET dset_conti_conti h5repack_layout.h5 dset_contiguous CONTIGUOUS -l dset_contiguous:CONTI + +VERIFY_LAYOUT_DSET chunk_compa h5repack_layout.h5 dset_chunk COMPACT -l dset_chunk:COMPA + +VERIFY_LAYOUT_DSET chunk_conti h5repack_layout.h5 dset_chunk CONTIGUOUS -l dset_chunk:CONTI + +VERIFY_LAYOUT_DSET chunk_18x13 h5repack_layout.h5 dset_chunk CHUNKED -l dset_chunk:CHUNK=18x13 + +# test convert small size dataset ( < 1k) to compact layout without -m +VERIFY_LAYOUT_DSET contig_small_compa h5repack_layout2.h5 contig_small COMPACT -l contig_small:COMPA + +VERIFY_LAYOUT_DSET contig_small_fixed_compa h5repack_layout2.h5 chunked_small_fixed COMPACT -l chunked_small_fixed:COMPA + +#--------------------------------------------------------------------------- +# Test file contains chunked datasets (need multiple dsets) with +# unlimited max dims. (HDFFV-7933) +# Use first dset to test. +#--------------------------------------------------------------------------- +# chunk to chunk - specify chunk dim bigger than any current dim +VERIFY_LAYOUT_DSET chunk2chunk h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:CHUNK=100x300 + +# chunk to contiguous +VERIFY_LAYOUT_DSET chunk2conti h5repack_layout3.h5 chunk_unlimit1 CONTI -l chunk_unlimit1:CONTI + +# chunk to compact - convert big dataset (should be > 64k) for this purpose, +# should remain as original layout (chunk) +VERIFY_LAYOUT_DSET chunk2compa h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:COMPA + +#-------------------------------------------------------------------------- +# Test -f for some specific cases. Chunked dataset with unlimited max dims. +# (HDFFV-8012) +#-------------------------------------------------------------------------- +# - should not fail +# - should not change max dims from unlimit + +# chunk dim is bigger than dataset dim. ( dset size < 64k ) +VERIFY_LAYOUT_DSET error1 h5repack_layout3.h5 chunk_unlimit1 H5S_UNLIMITED -f chunk_unlimit1:NONE +# chunk dim is bigger than dataset dim. ( dset size > 64k ) +VERIFY_LAYOUT_DSET error2 h5repack_layout3.h5 chunk_unlimit2 H5S_UNLIMITED -f chunk_unlimit2:NONE + +# chunk dims are smaller than dataset dims. ( dset size < 64k ) +#TOOLTEST_MAIN h5repack_layout3.h5 -f chunk_unlimit3:NONE +VERIFY_LAYOUT_DSET error3 h5repack_layout3.h5 chunk_unlimit3 H5S_UNLIMITED -f chunk_unlimit3:NONE + +# file input - should not fail +TOOLTEST error4 h5repack_layout3.h5 -f NONE + +#-------------------------------------------------------------------------- +# Test base: Convert CHUNK to CONTI for a chunked dataset with small dataset +# (dset size < 64K) and with unlimited max dims on a condition as follow. +# (HDFFV-8214) +#-------------------------------------------------------------------------- + +# chunk dim is bigger than dataset dim. should succeed. +VERIFY_LAYOUT_DSET ckdim_biger h5repack_layout3.h5 chunk_unlimit2 CONTI -l chunk_unlimit2:CONTI +# chunk dim is smaller than dataset dim. should succeed. +VERIFY_LAYOUT_DSET ckdim_smaller h5repack_layout3.h5 chunk_unlimit3 CONTI -l chunk_unlimit3:CONTI + + +# Native option +# Do not use FILE1, as the named dtype will be converted to native, and h5diff will +# report a difference. +TOOLTEST native_fill h5repack_fill.h5 -n +TOOLTEST native_attr h5repack_attr.h5 -n + + +# latest file format with long switches. use FILE4=h5repack_layout.h5 (no filters) +arg="h5repack_layout.h5 --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype]" +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP $arg +else + VERIFY_LAYOUT_ALL layout_long_switches h5repack_layout.h5 CHUNKED --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype] +fi + +# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters) +arg="h5repack_layout.h5 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]" +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP $arg +else + VERIFY_LAYOUT_ALL layout_short_switches h5repack_layout.h5 CHUNKED -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype] +fi + +# several global filters + +arg="h5repack_layout.h5 --filter GZIP=1 --filter SHUF" +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP $arg +else + TOOLTEST global_filters $arg +fi + +# syntax of -i infile -o outfile +# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters) +arg="h5repack_layout.h5 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]" +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP $arg +else + TOOLTEST0 old_style_layout_short_switches $arg +fi + +# add a userblock to file +arg="h5repack_objs.h5 -u ublock.bin -b 2048" +TOOLTEST add_userblock $arg + +# add alignment +arg="h5repack_objs.h5 -t 1 -a 1 " +TOOLTEST add_alignment $arg + +# Check repacking file with old version of layout message (should get upgraded +# to new version and be readable, etc.) +TOOLTEST upgrade_layout h5repack_layouto.h5 + +# test for datum size > H5TOOLS_MALLOCSIZE +TOOLTEST gt_mallocsize h5repack_objs.h5 -f GZIP=1 + +# Check repacking file with committed datatypes in odd configurations +TOOLTEST committed_dt h5repack_named_dtypes.h5 + +# tests family driver (file is located in common testfiles folder, uses TOOLTEST1 +TOOLTEST1 family tfamily%05d.h5 + +# test various references (bug 1814 and 1726) +TOOLTEST bug1814 h5repack_refs.h5 + +# test attribute with various references (bug1797 / HDFFV-5932) +# the references in attribute of compund or vlen datatype +TOOLTEST HDFFV-5932 h5repack_attr_refs.h5 + +# Add test for memory leak in attirbute. This test is verified by CTEST. +# 1. leak from vlen string +# 2. leak from compound type without reference member +# (HDFFV-7840, ) +# Note: this test is experimental for sharing test file among tools +TOOLTEST HDFFV-7840 h5diff_attr1.h5 + +# tests for metadata block size option +TOOLTEST_META meta_short h5repack_layout.h5 -M 8192 +TOOLTEST_META meta_long h5repack_layout.h5 --metadata_block_size=8192 + +# VDS tests + +################################################################ +# layout conversions +############################################################### +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP vds_dset_chunk_20x10x5 +else + VERIFY_LAYOUT_VDS vds_dset_chunk_20x10x5 1_vds.h5 vds_dset CHUNKED --layout vds_dset:CHUNK=20x10x5 +fi + +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP vds_chunk2x5x8 +else + VERIFY_LAYOUT_VDS vds_chunk2x5x8 3_1_vds.h5 vds_dset CHUNKED -l vds_dset:CHUNK=2x5x8 +fi + +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP vds_chunk3x6x9 +else + VERIFY_LAYOUT_VDS vds_chunk3x6x9 2_vds.h5 vds_dset CHUNKED -l vds_dset:CHUNK=3x6x9 +fi + +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP vds_compa 4_vds.h5 +else + VERIFY_LAYOUT_VDS vds_compa 4_vds.h5 vds_dset COMPACT -l vds_dset:COMPA +fi + +if test $USE_FILTER_DEFLATE != "yes" ; then + SKIP vds_conti 4_vds.h5 +else + VERIFY_LAYOUT_VDS vds_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI +fi + +# Clean up temporary files/directories +CLEAN_TESTFILES_AND_TESTDIR + +if test $nerrors -eq 0 ; then + echo "All $TESTNAME tests passed." + exit $EXIT_SUCCESS +else + echo "$TESTNAME tests failed with $nerrors errors." + exit $EXIT_FAILURE +fi + diff --git a/tools/test/h5repack/h5repack_plugin.sh.in b/tools/test/h5repack/h5repack_plugin.sh.in new file mode 100644 index 0000000..c7a9a6b --- /dev/null +++ b/tools/test/h5repack/h5repack_plugin.sh.in @@ -0,0 +1,275 @@ +#! /bin/sh +# +# Copyright by The HDF Group. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic document set and is +# linked from the top-level documents page. It can also be found at +# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have access +# to either file, you may request a copy from help@hdfgroup.org. +# +srcdir=@srcdir@ +TOP_BUILDDIR=@top_builddir@ + +# Determine backward compatibility options enabled +DEPRECATED_SYMBOLS="@DEPRECATED_SYMBOLS@" + +EXIT_SUCCESS=0 +EXIT_FAILURE=1 + +H5REPACK=../../src/h5repack/h5repack # The tool name +H5REPACK_BIN=`pwd`/$H5REPACK # The path of the tool binary + +H5DUMP=../../src/h5dump/h5dump # The h5dump tool name +H5DUMP_BIN=`pwd`/$H5DUMP # The path of the h5dump tool binary + +nerrors=0 +verbose=yes +exit_code=$EXIT_SUCCESS + +TEST_NAME=ud_plugin +FROM_DIR=`pwd`/.libs +PLUGIN_LIB="$FROM_DIR/libdynlibadd.*" +PLUGIN_LIB2="$FROM_DIR/libdynlibvers.*" +PLUGIN_LIBDIR=testdir3 +RM='rm -rf' + +GREP='grep' +CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' + +# source dirs +SRC_TOOLS="$srcdir/../.." + +# testfiles source dirs for tools +SRC_H5REPACK_TESTFILES="$SRC_TOOLS/test/h5repack/testfiles" + +TESTDIR=testplug +test -d $TESTDIR || mkdir $TESTDIR + +###################################################################### +# test files +# -------------------------------------------------------------------- +# All the test files copy from source directory to test directory +# NOTE: Keep this framework to add/remove test files. +# Any test files from other tools can be used in this framework. +# This list are also used for checking exist. +# Comment '#' without space can be used. +# -------------------------------------------------------------------- +LIST_HDF5_TEST_FILES=" +$SRC_H5REPACK_TESTFILES/h5repack_layout.h5 +$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-plugin_test.ddl +$SRC_H5REPACK_TESTFILES/plugin_test.h5repack_layout.h5.tst +$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-plugin_version_test.ddl +$SRC_H5REPACK_TESTFILES/plugin_version_test.h5repack_layout.h5.tst +" +#$SRC_H5REPACK_TESTFILES/h5repack_layout.UD.h5 +#$SRC_H5REPACK_TESTFILES/h5repack_layout.UD.h5-plugin_none.ddl +#$SRC_H5REPACK_TESTFILES/plugin_none.h5repack_layout.UD.h5.tst +#" + +# +# copy test files and expected output files from source dirs to test dir +# +COPY_TESTFILES="$LIST_HDF5_TEST_FILES" + +# Main Body +# Create test directories if not exists yet. +test -d $PLUGIN_LIBDIR || mkdir -p $PLUGIN_LIBDIR +if [ $? != 0 ]; then + echo "Failed to create test directory($PLUGIN_LIBDIR)" + exit $EXIT_FAILURE +fi + +# copy plugin library for test +$CP $PLUGIN_LIB $PLUGIN_LIBDIR +if [ $? != 0 ]; then + echo "Failed to copy plugin library ($PLUGIN_LIB) for test." + exit $EXIT_FAILURE +fi +$CP $PLUGIN_LIB2 $PLUGIN_LIBDIR +if [ $? != 0 ]; then + echo "Failed to copy plugin library ($PLUGIN_LIB2) for test." + exit $EXIT_FAILURE +fi + +# setup plugin path +ENVCMD="env HDF5_PLUGIN_PATH=../${PLUGIN_LIBDIR}" + +COPY_TESTFILES_TO_TESTDIR() +{ + # copy test files. Used -f to make sure get a new copy + for tstfile in $COPY_TESTFILES + do + # ignore '#' comment + echo $tstfile | tr -d ' ' | grep '^#' > /dev/null + RET=$? + if [ $RET -eq 1 ]; then + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi + fi + fi + done +} + +CLEAN_TESTFILES_AND_TESTDIR() +{ + # skip rm if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=$SRC_H5REPACK_TESTFILES + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $RM $TESTDIR + fi +} + +# Print a $* message left justified in a field of 70 characters +# +MESSAGE() { + SPACES=" " + echo "$* $SPACES" | cut -c1-70 | tr -d '\012' +} + +# Print a line-line message left justified in a field of 70 characters +# beginning with the word "Testing". +# +TESTING() { + SPACES=" " + echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012' +} + +# Print a line-line message left justified in a field of 70 characters +# beginning with the word "Verifying". +# +VERIFY() { + MESSAGE "Verifying $*" +} + +# This is different from $srcdir/../../../bin/output_filter.sh +STDOUT_FILTER() { + result_file=$1 + tmp_file=/tmp/h5test_tmp_$$ + # Filter name of files. + cp $result_file $tmp_file + sed -e '/^Opening file/d' -e '/^Making file/d' \ + < $tmp_file > $result_file + # cleanup + rm -f $tmp_file +} + +# This runs h5repack comparing output with h5dump output +# from -pH option +# +TOOLTEST_DUMP() +{ + echo $@ + infile=$2 + outfile=out-$1.$2 + expect1="$TESTDIR/$1.$2.tst" + actual1="$TESTDIR/$1.$2.out" + actual1_err="$TESTDIR/$1.$2.err" + expect2="$TESTDIR/$2-$1.ddl" + actual2="$TESTDIR/$2-$1.out" + actual2_err="$TESTDIR/$2-$1.err" + + shift + shift + + # Run test. + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $ENVCMD $H5REPACK_BIN "$@" $infile $outfile + ) >$actual1 2>$actual1_err + RET=$? + STDOUT_FILTER $actual1 + cat $actual1_err >> $actual1 + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + if cmp -s $expect1 $actual1; then + echo " PASSED" + else + echo "*FAILED*" + echo " Expected result (*.tst) differs from actual result (*.out)" + nerrors="`expr $nerrors + 1`" + test yes = "$verbose" && diff -c $expect1 $actual1 |sed 's/^/ /' + fi + VERIFY h5dump output -pH $outfile + ( + cd $TESTDIR + $ENVCMD $H5DUMP_BIN -pH $outfile + ) >$actual2 2>$actual2_err + RET=$? + cat $actual2_err >> $actual2 + + if cmp -s $expect2 $actual2; then + echo " PASSED" + else + echo "*FAILED*" + echo " Expected result (*.ddl) differs from actual result (*.out)" + nerrors="`expr $nerrors + 1`" + test yes = "$verbose" && diff -c $expect2 $actual2 |sed 's/^/ /' + fi + + fi + + + rm -f $actual1 $actual1_err $actual2 $actual2_err + rm -f $outfile +} + +############################################################################## +### T H E T E S T S +############################################################################## +# prepare for test +COPY_TESTFILES_TO_TESTDIR + +# Run the test +arg="h5repack_layout.h5 -v -f UD=260,4,9,1,9,235" +TOOLTEST_DUMP plugin_version_test $arg + +arg="h5repack_layout.h5 -v -f UD=257,1,9" +TOOLTEST_DUMP plugin_test $arg + +#arg="h5repack_layout.UD.h5 -v -f NONE" +#TOOLTEST_DUMP plugin_none $arg + +# print results +if test $nerrors -ne 0 ; then + echo "$nerrors errors encountered" + exit_code=$EXIT_FAILURE +else + echo "All Plugin API tests passed." + exit_code=$EXIT_SUCCESS +fi + +# Clean up temporary files/directories +CLEAN_TESTFILES_AND_TESTDIR + +# Clean up temporary files/directories and leave +$RM $PLUGIN_LIBDIR + +exit $exit_code diff --git a/tools/test/h5repack/h5repacktst.c b/tools/test/h5repack/h5repacktst.c new file mode 100644 index 0000000..82b45fc --- /dev/null +++ b/tools/test/h5repack/h5repacktst.c @@ -0,0 +1,6856 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * +* Copyright by The HDF Group. * +* Copyright by the Board of Trustees of the University of Illinois. * +* All rights reserved. * +* * +* This file is part of HDF5. The full HDF5 copyright notice, including * +* terms governing use, modification, and redistribution, is contained in * +* the files COPYING and Copyright.html. COPYING can be found at the root * +* of the source code distribution tree; Copyright.html can be found at the * +* root level of an installed copy of the electronic HDF5 document set and * +* is linked from the top-level documents page. It can also be found at * +* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * +* access to either file, you may request a copy from help@hdfgroup.org. * +* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +#include "h5repack.h" +#include "h5test.h" +#include "h5diff.h" +#include "h5tools.h" +#include "h5tools_utils.h" + +#define GOERROR {H5_FAILED(); goto error;} + + +/* fill value test */ +#define FNAME0 "h5repack_fill.h5" +#define FNAME0OUT "h5repack_fill_out.h5" +/* HDF5 objects and all dataset datatypes */ +#define FNAME1 "h5repack_objs.h5" +#define FNAME1OUT "h5repack_objs_out.h5" +/* attributes, all datatypes */ +#define FNAME2 "h5repack_attr.h5" +#define FNAME2OUT "h5repack_attr_out.h5" +/* hard links */ +#define FNAME3 "h5repack_hlink.h5" +#define FNAME3OUT "h5repack_hlink_out.h5" +/* layout */ +#define FNAME4 "h5repack_layout.h5" +#define FNAME4OUT "h5repack_layout_out.h5" +/* H5D_ALLOC_TIME_EARLY */ +#define FNAME5 "h5repack_early.h5" +#define FNAME5OUT "h5repack_early_out.h5" +#define FNAME6 "h5repack_early2.h5" +#ifdef H5_HAVE_FILTER_SZIP +/* SZIP filter */ +#define FNAME7 "h5repack_szip.h5" +#define FNAME7OUT "h5repack_szip_out.h5" +#endif +/* GZIP filter */ +#define FNAME8 "h5repack_deflate.h5" +#define FNAME8OUT "h5repack_deflate_out.h5" +/* GZIP filter */ +#define FNAME9 "h5repack_shuffle.h5" +#define FNAME9OUT "h5repack_shuffle_out.h5" +/* Fletcher filter */ +#define FNAME10 "h5repack_fletcher.h5" +#define FNAME10OUT "h5repack_fletcher_out.h5" +/* All filters */ +#define FNAME11 "h5repack_filters.h5" +#define FNAME11OUT "h5repack_filters_out.h5" +/* NBit filter */ +#define FNAME12 "h5repack_nbit.h5" +#define FNAME12OUT "h5repack_nbit_out.h5" +/* Scale Offset filter */ +#define FNAME13 "h5repack_soffset.h5" +#define FNAME13OUT "h5repack_soffset_out.h5" +/* Big file to test read by hyperslabs */ +#define FNAME14 "h5repack_big.h5" +#define FNAME14OUT "h5repack_big_out.h5" +/* external file */ +#define FNAME15 "h5repack_ext.h5" +#define FNAME15OUT "h5repack_ext_out.h5" +/* File w/userblock */ +#define FNAME16 "h5repack_ub.h5" +#define FNAME16OUT "h5repack_ub_out.h5" +/* Named datatypes */ +#define FNAME17 "h5repack_named_dtypes.h5" +#define FNAME17OUT "h5repack_named_dtypes_out.h5" + +#define FNAME18 "h5repack_layout2.h5" + +#define FNAME_UB "ublock.bin" + +/* obj and region references */ +#define FNAME_REF "h5repack_refs.h5" + +/* obj and region references in attr of compound and vlen type */ +#define FNAME_ATTR_REF "h5repack_attr_refs.h5" + +const char *H5REPACK_FILENAMES[] = { + "h5repack_big_out", + NULL +}; + +#define H5REPACK_EXTFILE "h5repack_ext.bin" + +/* Name of tool */ +#define PROGRAMNAME "h5repacktst" + + +#define DIM1 40 +#define DIM2 20 +#define CDIM1 DIM1/2 +#define CDIM2 DIM2/2 +#define RANK 2 + +/* Size of userblock (for userblock test) */ +#define USERBLOCK_SIZE 2048 + +/* obj and region references */ +#define NAME_OBJ_DS1 "Dset1" +#define NAME_OBJ_GRP "Group" +#define NAME_OBJ_NDTYPE "NamedDatatype" +#define NAME_OBJ_DS2 "Dset2" +#define REG_REF_DS1 "Dset_REGREF" + +/*------------------------------------------------------------------------- +* prototypes +*------------------------------------------------------------------------- +*/ +static int make_all_objects(hid_t loc_id); +static int make_attributes(hid_t loc_id); +static int make_hlinks(hid_t loc_id); +static int make_early(void); +static int make_layout(hid_t loc_id); +static int make_layout2(hid_t loc_id); +static int make_layout3(hid_t loc_id); +#ifdef H5_HAVE_FILTER_SZIP +static int make_szip(hid_t loc_id); +#endif /* H5_HAVE_FILTER_SZIP */ +static int make_deflate(hid_t loc_id); +static int make_shuffle(hid_t loc_id); +static int make_fletcher32(hid_t loc_id); +static int make_nbit(hid_t loc_id); +static int make_scaleoffset(hid_t loc_id); +static int make_all_filters(hid_t loc_id); +static int make_fill(hid_t loc_id); +static int make_big(hid_t loc_id); +static int make_testfiles(void); +static int write_dset_in(hid_t loc_id,const char* dset_name,hid_t file_id,int make_diffs ); +static int write_attr_in(hid_t loc_id,const char* dset_name,hid_t fid,int make_diffs ); +static int write_dset(hid_t loc_id,int rank,hsize_t *dims,const char *dset_name,hid_t tid,void *buf ); +static int make_dset(hid_t loc_id,const char *name,hid_t sid,hid_t dcpl,void *buf); +static int make_attr(hid_t loc_id,int rank,hsize_t *dims,const char *attr_name,hid_t tid,void *buf); +static int make_dset_reg_ref(hid_t loc_id); +static int make_external(hid_t loc_id); +static int make_userblock(void); +static int verify_userblock( const char* filename); +static int make_userblock_file(void); +static int make_named_dtype(hid_t loc_id); +static int make_references(hid_t loc_id); +static int make_complex_attr_references(hid_t loc_id); + + +/*------------------------------------------------------------------------- +* Function: main +* +* Purpose: Executes h5repack tests +* +* Return: Success: zero +* Failure: 1 +* +* Programmer: Pedro Vicente <pvn@ncsa.uiuc.edu> +* January, 6, 2004 +* +*------------------------------------------------------------------------- +*/ + +int main (void) +{ + pack_opt_t pack_options; + diff_opt_t diff_options; + hsize_t fs_size = 0; /* free space section threshold */ + H5F_file_space_type_t fs_type = H5F_FILE_SPACE_DEFAULT; /* file space handling strategy */ + h5_stat_t file_stat; + h5_stat_size_t fsize1, fsize2; /* file sizes */ +#if defined (H5_HAVE_FILTER_SZIP) + int szip_can_encode = 0; +#endif + + h5tools_setprogname(PROGRAMNAME); + h5tools_setstatus(EXIT_SUCCESS); + + /* Initialize h5tools lib */ + h5tools_init(); + + /* initialize */ + HDmemset(&diff_options, 0, sizeof (diff_opt_t)); + HDmemset(&pack_options, 0, sizeof (pack_opt_t)); + + /* run tests */ + puts("Testing h5repack:"); + + /* make the test files */ + TESTING(" generating datasets"); + if (make_testfiles() < 0) + GOERROR; + PASSED(); + + /*------------------------------------------------------------------------- + * Format of the tests: + * + * 1) make a copy of the file with h5repack + * 2) use the h5diff function to compare the input and output file + *------------------------------------------------------------------------- + */ + + + /*------------------------------------------------------------------------- + * file with fill values + *------------------------------------------------------------------------- + */ + + TESTING(" copy of datasets (fill values)"); + + /* fs_type = 0; fs_size = 0 */ + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack(FNAME0,FNAME0OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME0,FNAME0OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME0, FNAME0OUT,&pack_options)<=0) + GOERROR; + if (h5repack_cmp_pl(FNAME0,FNAME0OUT)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + + /*------------------------------------------------------------------------- + * file with all kinds of dataset datatypes + *------------------------------------------------------------------------- + */ + TESTING(" copy of datasets (all datatypes)"); + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack(FNAME1,FNAME1OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME1,FNAME1OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME1, FNAME1OUT,&pack_options)<=0) + GOERROR; + if (h5repack_cmp_pl(FNAME1,FNAME1OUT)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + + /*------------------------------------------------------------------------- + * file with attributes + *------------------------------------------------------------------------- + */ + TESTING(" copy of datasets (attributes)"); + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack(FNAME2,FNAME2OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME2,FNAME2OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME2, FNAME2OUT,&pack_options)<=0) + GOERROR; + if (h5repack_cmp_pl(FNAME2,FNAME2OUT)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + /*------------------------------------------------------------------------- + * file with hardlinks + *------------------------------------------------------------------------- + */ + TESTING(" copy of datasets (hardlinks)"); + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack(FNAME3,FNAME3OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME3,FNAME3OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME3, FNAME3OUT,&pack_options)<=0) + GOERROR; + if (h5repack_cmp_pl(FNAME3,FNAME3OUT)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + /*------------------------------------------------------------------------- + * alloc early test + *------------------------------------------------------------------------- + */ + TESTING(" copy of allocation early file"); + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack(FNAME5,FNAME5OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME5,FNAME5OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME5, FNAME5OUT, &pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + /*------------------------------------------------------------------------- + * the remaining files differ in the dcpl's + *------------------------------------------------------------------------- + */ + + /*------------------------------------------------------------------------- + * deflate + *------------------------------------------------------------------------- + */ + TESTING(" adding deflate filter (old_format)"); + +#ifdef H5_HAVE_FILTER_DEFLATE + + /*------------------------------------------------------------------------- + * test an individual object option + *------------------------------------------------------------------------- + */ + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset1:GZIP=9",&pack_options) < 0) + GOERROR; + if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); +#else + SKIPPED(); +#endif + + TESTING(" adding deflate filter (new format)"); +#ifdef H5_HAVE_FILTER_DEFLATE + /*------------------------------------------------------------------------- + * test an individual object option + * For new format, "dset1" should be using Fixed Array indexing + *------------------------------------------------------------------------- + */ + + if (h5repack_init (&pack_options, 0, TRUE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset1:GZIP=9",&pack_options) < 0) + GOERROR; + if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); +#else + SKIPPED(); +#endif + + /*------------------------------------------------------------------------- + * test all objects option + *------------------------------------------------------------------------- + */ + + TESTING(" adding deflate filter to all"); + +#ifdef H5_HAVE_FILTER_DEFLATE + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("GZIP=1",&pack_options) < 0) + GOERROR; + if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); +#else + SKIPPED(); +#endif + + /*------------------------------------------------------------------------- + * SZIP + *------------------------------------------------------------------------- + */ + + TESTING(" adding szip filter"); + +#if defined (H5_HAVE_FILTER_SZIP) + if (h5tools_can_encode(H5Z_FILTER_SZIP) >0) { + szip_can_encode = 1; + } + + /*------------------------------------------------------------------------- + * test an individual object option + *------------------------------------------------------------------------- + */ + + if (szip_can_encode) { + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset2:SZIP=8,EC",&pack_options) < 0) + GOERROR; + if (h5repack_addlayout("dset2:CHUNK=20x10",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + } else { + SKIPPED(); + } +#else + SKIPPED(); +#endif + + + /*------------------------------------------------------------------------- + * test all objects option + *------------------------------------------------------------------------- + */ + TESTING(" adding szip filter to all"); + +#if defined (H5_HAVE_FILTER_SZIP) + if (szip_can_encode) { + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("SZIP=8,NN",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + } else { + SKIPPED(); + } +#else + SKIPPED(); +#endif + + + TESTING(" addding shuffle filter"); + + /*------------------------------------------------------------------------- + * test an individual object option + *------------------------------------------------------------------------- + */ + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset1:SHUF",&pack_options) < 0) + GOERROR; + if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + /*------------------------------------------------------------------------- + * test all objects option + *------------------------------------------------------------------------- + */ + + TESTING(" addding shuffle filter to all"); + + /* fs_type = H5F_FILE_SPACE_ALL_PERSIST; fs_size = 1 */ + if (h5repack_init (&pack_options, 0, FALSE, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) + GOERROR; + if (h5repack_addfilter("SHUF",&pack_options) < 0) + GOERROR; + if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + + TESTING(" adding checksum filter"); + + /*------------------------------------------------------------------------- + * test an individual object option + *------------------------------------------------------------------------- + */ + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset1:FLET",&pack_options) < 0) + GOERROR; + if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + /*------------------------------------------------------------------------- + * test all objects option + *------------------------------------------------------------------------- + */ + + + TESTING(" adding checksum filter to all"); + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("FLET",&pack_options) < 0) + GOERROR; + if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + + TESTING(" filter queue fletcher, shuffle, deflate, szip"); + + /*------------------------------------------------------------------------- + * add some filters + *------------------------------------------------------------------------- + */ + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("dset1:CHUNK 20x10",&pack_options) < 0) + GOERROR; + if (h5repack_addfilter("dset1:FLET",&pack_options) < 0) + GOERROR; + if (h5repack_addfilter("dset1:SHUF",&pack_options) < 0) + GOERROR; + +#if defined (H5_HAVE_FILTER_SZIP) + if (szip_can_encode) { + if (h5repack_addfilter("dset1:SZIP=8,NN",&pack_options) < 0) + GOERROR; + } +#endif + +#ifdef H5_HAVE_FILTER_DEFLATE + if (h5repack_addfilter("dset1:GZIP=1",&pack_options) < 0) + GOERROR; +#endif + + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + + TESTING(" adding layout chunked (old format)"); + + /*------------------------------------------------------------------------- + * test an individual object option + *------------------------------------------------------------------------- + */ + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options )<= 0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + TESTING(" adding layout chunked (new format)"); + + /*------------------------------------------------------------------------- + * test an individual object option + * For new format, "dset1" should be using Fixed Array indexing + *------------------------------------------------------------------------- + */ + + if (h5repack_init (&pack_options, 0, TRUE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options )<= 0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + /*------------------------------------------------------------------------- + * test all objects option + *------------------------------------------------------------------------- + */ + TESTING(" adding layout chunked to all"); + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + TESTING(" adding layout contiguous"); + + /*------------------------------------------------------------------------- + * test an individual object option + *------------------------------------------------------------------------- + */ + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("dset1:CONTI",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + TESTING(" adding layout contiguous to all"); + + /*------------------------------------------------------------------------- + * test all objects option + *------------------------------------------------------------------------- + */ + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("CONTI",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + /*------------------------------------------------------------------------- + * do the same test for a file with filters (chunked) + *------------------------------------------------------------------------- + */ + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("CONTI",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME8, FNAME8OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + TESTING(" adding layout compact"); + + /*------------------------------------------------------------------------- + * test an individual object option + *------------------------------------------------------------------------- + */ + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("dset1:COMPA",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + TESTING(" adding layout compact to all"); + + /*------------------------------------------------------------------------- + * test all objects option + *------------------------------------------------------------------------- + */ + + /* fs_type = H5F_FILE_SPACE_ALL; fs_size = 2 */ + if (h5repack_init (&pack_options, 0, FALSE, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) + GOERROR; + if (h5repack_addlayout("COMPA",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + + TESTING(" layout compact to contiguous conversion"); + + /*------------------------------------------------------------------------- + * layout compact to contiguous conversion + *------------------------------------------------------------------------- + */ + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("dset_compact:CONTI",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + TESTING(" layout compact to chunk conversion"); + + /*------------------------------------------------------------------------- + * layout compact to chunk conversion + *------------------------------------------------------------------------- + */ + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("dset_compact:CHUNK=2x5",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + TESTING(" layout compact to compact conversion"); + + /*------------------------------------------------------------------------- + * layout compact to compact conversion + *------------------------------------------------------------------------- + */ + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("dset_compact:COMPA",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + TESTING(" layout contiguous to compact conversion"); + /*------------------------------------------------------------------------- + * layout contiguous to compact conversion + *------------------------------------------------------------------------- + */ + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("dset_contiguous:COMPA",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + TESTING(" layout contiguous to chunk conversion"); + /*------------------------------------------------------------------------- + * layout contiguous to chunk conversion + *------------------------------------------------------------------------- + */ + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("dset_contiguous:CHUNK=3x6",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + TESTING(" layout contiguous to contiguous conversion"); + + /*------------------------------------------------------------------------- + * layout contiguous to contiguous conversion + *------------------------------------------------------------------------- + */ + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("dset_contiguous:CONTI",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + TESTING(" layout chunked to compact conversion"); + /*------------------------------------------------------------------------- + * layout chunked to compact conversion + *------------------------------------------------------------------------- + */ + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("dset_chunk:COMPA",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + TESTING(" layout chunked to contiguous conversion"); + + /*------------------------------------------------------------------------- + * layout chunked to contiguous conversion + *------------------------------------------------------------------------- + */ + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("dset_chunk:CONTI",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + TESTING(" layout chunked to chunk conversion"); + /*------------------------------------------------------------------------- + * layout chunked to chunked conversion + *------------------------------------------------------------------------- + */ + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("dset_chunk:CHUNK=18x13",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + + /*------------------------------------------------------------------------- + * the following tests assume the input files have filters + * FNAME7 + * FNAME8 + * FNAME9 + * FNAME10 + * FNAME11 + *------------------------------------------------------------------------- + */ + + + TESTING(" copy of szip filter"); + +#if defined (H5_HAVE_FILTER_SZIP) + if (szip_can_encode) { + /* fs_type = H5F_FILE_SPACE_AGGR_VFD; fs_size = 3 */ + if (h5repack_init (&pack_options, 0, FALSE, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) + GOERROR; + if (h5repack(FNAME7,FNAME7OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME7,FNAME7OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME7, FNAME7OUT,&pack_options)<=0) + GOERROR; + if (h5repack_cmp_pl(FNAME7,FNAME7OUT)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + } else { + SKIPPED(); + } +#else + SKIPPED(); +#endif + + TESTING(" removing szip filter"); + +#if defined (H5_HAVE_FILTER_SZIP) + if (szip_can_encode) { + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset_szip:NONE",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME7,FNAME7OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME7,FNAME7OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME7, FNAME7OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + } else { + SKIPPED(); + } +#else + SKIPPED(); +#endif + + + TESTING(" copy of deflate filter"); + +#ifdef H5_HAVE_FILTER_DEFLATE + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME8, FNAME8OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); +#else + SKIPPED(); +#endif + + + TESTING(" removing deflate filter"); + +#ifdef H5_HAVE_FILTER_DEFLATE + if (h5repack_init (&pack_options, 0, FALSE, fs_type, ++fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset_deflate:NONE",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME8,FNAME8OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME8, FNAME8OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); +#else + SKIPPED(); +#endif + + + + TESTING(" copy of shuffle filter"); + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack(FNAME9,FNAME9OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME9,FNAME9OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME9, FNAME9OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + + TESTING(" removing shuffle filter"); + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset_shuffle:NONE",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME9,FNAME9OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME9,FNAME9OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME9, FNAME9OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + + TESTING(" copy of fletcher filter"); + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack(FNAME10,FNAME10OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME10,FNAME10OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME10, FNAME10OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + + TESTING(" removing fletcher filter"); + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset_fletcher32:NONE",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME10,FNAME10OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME10,FNAME10OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME10, FNAME10OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + + TESTING(" copy of nbit filter"); + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME12, FNAME12OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + + TESTING(" removing nbit filter"); + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset_nbit:NONE",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME12, FNAME12OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + + TESTING(" adding nbit filter"); + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset_int31:NBIT",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME12,FNAME12OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME12, FNAME12OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + + TESTING(" copy of scaleoffset filter"); + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME13, FNAME13OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + + TESTING(" removing scaleoffset filter"); + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset_scaleoffset:NONE",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME13, FNAME13OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + + TESTING(" adding scaleoffset filter"); + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset_none:SOFF=31,IN",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME13,FNAME13OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME13, FNAME13OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + + + /*------------------------------------------------------------------------- + * file with all filters + * dset_all + * dset_deflate + * dset_szip + * dset_shuffle + * dset_fletcher32 + *------------------------------------------------------------------------- + */ + + + TESTING(" filter conversion from deflate to szip"); + +#if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE) + + if (szip_can_encode) { + /* fs_type = H5F_FILE_SPACE_VFD; fs_size = 4 */ + if (h5repack_init (&pack_options, 0, FALSE, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset_deflate:SZIP=8,NN",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + } else { + SKIPPED(); + } +#else + SKIPPED(); +#endif + + TESTING(" filter conversion from szip to deflate"); + +#if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE) + + if (szip_can_encode) { + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset_szip:GZIP=1",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); + } else { + SKIPPED(); + } +#else + SKIPPED(); +#endif + + + /*------------------------------------------------------------------------- + * test the NONE global option + *------------------------------------------------------------------------- + */ + + TESTING(" removing all filters"); + +#if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE) + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("NONE",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); +#else + SKIPPED(); +#endif + + /*------------------------------------------------------------------------- + * test a big file + *------------------------------------------------------------------------- + */ + TESTING(" big file"); + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack(FNAME14,FNAME14OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME14,FNAME14OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME14, FNAME14OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + /*------------------------------------------------------------------------- + * test external dataset + *------------------------------------------------------------------------- + */ + TESTING(" external datasets"); + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack(FNAME15,FNAME15OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME15,FNAME15OUT,NULL,NULL,&diff_options) > 0) + GOERROR; + if (h5repack_verify(FNAME15, FNAME15OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + /*------------------------------------------------------------------------- + * test file with userblock + *------------------------------------------------------------------------- + */ + TESTING(" file with userblock"); + if(h5repack_init(&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if(h5repack(FNAME16, FNAME16OUT, &pack_options) < 0) + GOERROR; + if(h5diff(FNAME16, FNAME16OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if(h5repack_verify(FNAME16, FNAME16OUT, &pack_options) <= 0) + GOERROR; + if(verify_userblock(FNAME16OUT) < 0) + GOERROR; + if(h5repack_end(&pack_options) < 0) + GOERROR; + PASSED(); + + /*------------------------------------------------------------------------- + * test --latest options + *------------------------------------------------------------------------- + */ + TESTING(" latest file format options"); + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + pack_options.latest=1; + pack_options.grp_compact=10; + pack_options.grp_indexed=5; + pack_options.msg_size[0] = 10; + pack_options.msg_size[1] = 20; + pack_options.msg_size[2] = 30; + pack_options.msg_size[3] = 40; + pack_options.msg_size[4] = 50; + if (h5repack(FNAME1,FNAME1OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME1,FNAME1OUT,NULL,NULL,&diff_options) > 0) + GOERROR; + if (h5repack_verify(FNAME1, FNAME1OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + + /*------------------------------------------------------------------------- + * test several global filters + *------------------------------------------------------------------------- + */ + + TESTING(" several global filters"); + +#if defined (H5_HAVE_FILTER_DEFLATE) + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("GZIP=1",&pack_options) < 0) + GOERROR; + if (h5repack_addfilter("SHUF",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME11,FNAME11OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME11,FNAME11OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME11, FNAME11OUT,&pack_options)<=0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + + PASSED(); +#else + SKIPPED(); +#endif + + + /*------------------------------------------------------------------------- + * test file with userblock + *------------------------------------------------------------------------- + */ + TESTING(" file with added userblock"); + +#ifdef H5_HAVE_FILTER_DEFLATE + + if(h5repack_init(&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + + /* add the options for a user block size and user block filename */ + pack_options.ublock_size = USERBLOCK_SIZE; + pack_options.ublock_filename = FNAME_UB; + + if(h5repack(FNAME8, FNAME8OUT, &pack_options) < 0) + GOERROR; + if(h5diff(FNAME8, FNAME8OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if(h5repack_verify(FNAME8, FNAME8OUT, &pack_options) <= 0) + GOERROR; + if(verify_userblock(FNAME8OUT) < 0) + GOERROR; + if(h5repack_end(&pack_options) < 0) + GOERROR; + + + PASSED(); +#else + SKIPPED(); +#endif + + + /*------------------------------------------------------------------------- + * test file with aligment + *------------------------------------------------------------------------- + */ + TESTING(" file with aligment"); + +#ifdef H5_HAVE_FILTER_DEFLATE + + if(h5repack_init(&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + + /* add the options for aligment */ + pack_options.alignment = 1; + pack_options.threshold = 1; + + if(h5repack(FNAME8, FNAME8OUT, &pack_options) < 0) + GOERROR; + if(h5diff(FNAME8, FNAME8OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if(h5repack_verify(FNAME8, FNAME8OUT, &pack_options) <= 0) + GOERROR; + + /* verify aligment */ + { + hsize_t threshold; + hsize_t alignment; + hid_t fapl; + hid_t fid; + + if (( fid = H5Fopen(FNAME8OUT, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0 ) + GOERROR; + if ((fapl = H5Fget_access_plist(fid)) < 0) + GOERROR; + if ( H5Pget_alignment(fapl, &threshold, &alignment ) < 0) + GOERROR; + if ( threshold != 1 ) + GOERROR; + if ( alignment != 1 ) + GOERROR; + if ( H5Pclose(fapl) < 0) + GOERROR; + if (H5Fclose(fid) < 0) + GOERROR; + + } + + + if(h5repack_end(&pack_options) < 0) + GOERROR; + + + PASSED(); +#else + SKIPPED(); +#endif + + /*------------------------------------------------------------------------- + * test file with userblock + *------------------------------------------------------------------------- + */ + TESTING(" file with committed datatypes"); + + if(h5repack_init(&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + + if(h5repack(FNAME17, FNAME17OUT, &pack_options) < 0) + GOERROR; + if(h5diff(FNAME17, FNAME17OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if(h5repack_verify(FNAME17, FNAME17OUT, &pack_options) <= 0) + GOERROR; + if(h5repack_end(&pack_options) < 0) + GOERROR; + + + PASSED(); + + /*------------------------------------------------------------------------- + * test --metadata_block_size option + * Also verify that output file using the metadata_block_size option is + * larger than the output file one not using it. + * FNAME4 is used because it is the same as the test file used for the + * shell script version of this test (h5repack.sh). + *------------------------------------------------------------------------- + */ + TESTING(" metadata block size option"); + /* First run without metadata option. No need to verify the correctness */ + /* since this has been verified by earlier tests. Just record the file */ + /* size of the output file. */ + if(h5repack_init(&pack_options, 0, FALSE, H5F_FILE_SPACE_DEFAULT, (hsize_t)0) < 0) + GOERROR; + if(h5repack(FNAME4, FNAME4OUT, &pack_options) < 0) + GOERROR; + if(HDstat(FNAME4OUT, &file_stat) < 0) + GOERROR; + fsize1 = file_stat.st_size; + if(h5repack_end(&pack_options) < 0) + GOERROR; + + /* run it again with metadata option */ + if(h5repack_init(&pack_options, 0, FALSE, H5F_FILE_SPACE_DEFAULT, (hsize_t)0) < 0) + GOERROR; + pack_options.meta_block_size = 8192; + if(h5repack(FNAME4, FNAME4OUT, &pack_options) < 0) + GOERROR; + if(h5diff(FNAME4, FNAME4OUT, NULL, NULL, &diff_options) > 0) + GOERROR; + if(h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0) + GOERROR; + /* record the file size of the output file */ + if(HDstat(FNAME4OUT, &file_stat) < 0) + GOERROR; + fsize2 = file_stat.st_size; + /* verify second file size is larger than the first one */ + if(fsize2 <= fsize1) + GOERROR; + if(h5repack_end(&pack_options) < 0) + GOERROR; + PASSED(); + + + /*------------------------------------------------------------------------- + * clean temporary test files + *------------------------------------------------------------------------- + */ + { + hid_t fapl; + + fapl = h5_fileaccess(); + h5_clean_files(H5REPACK_FILENAMES, fapl); + + } + + puts("All h5repack tests passed."); + + h5tools_close(); + + return 0; + +error: + puts("***** H5REPACK TESTS FAILED *****"); + return 1; + +} + + +/*------------------------------------------------------------------------- +* Function: make_testfiles +* +* Purpose: make a test file with all types of HDF5 objects, +* datatypes and filters +* +*------------------------------------------------------------------------- +*/ +static +int make_testfiles(void) +{ + hid_t fid; + + /*------------------------------------------------------------------------- + * create a file for general copy test + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME0,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_fill(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create another file for general copy test (all datatypes) + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME1,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_all_objects(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create a file for attributes copy test + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME2,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_attributes(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create a file for hard links test + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME3,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_hlinks(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create a file for layouts test + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME4,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_layout(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create a file for layout conversion test + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME18, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + return -1; + + if(make_layout2(fid) < 0) + goto out; + + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * for test layout conversions form chunk with unlimited max dims + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate("h5repack_layout3.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + return -1; + + if(make_layout3(fid) < 0) + goto out; + + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create a file for the H5D_ALLOC_TIME_EARLY test + *------------------------------------------------------------------------- + */ + if (make_early() < 0) + goto out; + + /*------------------------------------------------------------------------- + * create a file with the SZIP filter + *------------------------------------------------------------------------- + */ +#ifdef H5_HAVE_FILTER_SZIP + if((fid = H5Fcreate(FNAME7,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_szip(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; +#endif /* H5_HAVE_FILTER_SZIP */ + + + /*------------------------------------------------------------------------- + * create a file with the deflate filter + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME8,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_deflate(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create a file with the shuffle filter + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME9,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_shuffle(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create a file with the fletcher32 filter + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME10,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_fletcher32(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create a file with all the filters + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME11,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_all_filters(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create a file with the nbit filter + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME12,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_nbit(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create a file with the scaleoffset filter + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME13,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_scaleoffset(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create a big dataset + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME14,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_big(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create a file with external dataset + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME15,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_external(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create a file with userblock + *------------------------------------------------------------------------- + */ + if(make_userblock() < 0) + goto out; + + /*------------------------------------------------------------------------- + * create a userblock file + *------------------------------------------------------------------------- + */ + if(make_userblock_file() < 0) + goto out; + + /*------------------------------------------------------------------------- + * create a file with named datatypes + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME17,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_named_dtype(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create obj and region reference type datasets (bug1814) + * add attribute with int type (bug1726) + * add attribute with obj and region reference type (bug1726) + *-------------------------------------------------------------------------*/ + if((fid = H5Fcreate(FNAME_REF,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + /* create reference type datasets */ + if (make_references(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create a file with obj and region references in attribute of compound and + * vlen datatype + *-------------------------------------------------------------------------*/ + if((fid = H5Fcreate(FNAME_ATTR_REF,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT)) < 0) + return -1; + if (make_complex_attr_references(fid) < 0) + goto out; + if(H5Fclose(fid) < 0) + return -1; + + return 0; + +out: + H5Fclose(fid); + return -1; +} + + + +/*------------------------------------------------------------------------- +* Function: make_all_objects +* +* Purpose: make a test file with all types of HDF5 objects +* +*------------------------------------------------------------------------- +*/ +static +int make_all_objects(hid_t loc_id) +{ + hid_t did=-1; + hid_t gid=-1; + hid_t tid=-1; + hid_t rid=-1; + hid_t sid=-1; + hid_t gcplid=-1; + hsize_t dims[1]={2}; + /* compound datatype */ + typedef struct s_t + { + int a; + float b; + } s_t; + + /*------------------------------------------------------------------------- + * H5G_DATASET + *------------------------------------------------------------------------- + */ + if ((sid = H5Screate_simple(1, dims, NULL)) < 0) + goto out; + if ((did = H5Dcreate2(loc_id, "dset_referenced", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + + + /*------------------------------------------------------------------------- + * H5G_GROUP + *------------------------------------------------------------------------- + */ + if ((gid = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if (H5Gclose(gid) < 0) + goto out; + + /* create a group "g2" with H5P_CRT_ORDER_TRACKED set */ + if ((gcplid = H5Pcreate(H5P_GROUP_CREATE)) < 0) + goto out; + if (H5Pset_link_creation_order(gcplid, H5P_CRT_ORDER_TRACKED) < 0) + goto out; + if ((gid = H5Gcreate2(loc_id, "g2", H5P_DEFAULT, gcplid, H5P_DEFAULT)) < 0) + goto out; + if (H5Gclose(gid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5G_TYPE + *------------------------------------------------------------------------- + */ + + /* create a compound datatype */ + if ((tid = H5Tcreate(H5T_COMPOUND, sizeof(s_t))) < 0) + goto out; + if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_INT) < 0) + goto out; + if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_FLOAT) < 0) + goto out; + if (H5Tcommit2(loc_id, "type", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5G_LINK + *------------------------------------------------------------------------- + */ + + if (H5Lcreate_soft("dset", loc_id, "link", H5P_DEFAULT, H5P_DEFAULT) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5G_UDLINK + *------------------------------------------------------------------------- + */ + /* Create an external link. Other UD links are not supported by h5repack */ + if (H5Lcreate_external("file", "path", loc_id, "ext_link", H5P_DEFAULT, H5P_DEFAULT) < 0) + goto out; + + /*------------------------------------------------------------------------- + * write a series of datasetes at root + *------------------------------------------------------------------------- + */ + + if ((rid = H5Gopen2(loc_id, "/", H5P_DEFAULT)) < 0) + goto out; + if (write_dset_in(rid,"dset_referenced",loc_id,0) < 0) + goto out; + if (H5Gclose(rid) < 0) + goto out; + + /* close */ + if (H5Dclose(did) < 0) + goto out; + if (H5Sclose(sid) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + if (H5Pclose(gcplid) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY + { + H5Dclose(did); + H5Gclose(gid); + H5Gclose(rid); + H5Sclose(sid); + H5Tclose(tid); + H5Pclose(gcplid); + } H5E_END_TRY; + return -1; +} + + +/*------------------------------------------------------------------------- +* Function: make_attributes +* +* Purpose: make a test file with all types of attributes +* +*------------------------------------------------------------------------- +*/ +static +int make_attributes(hid_t loc_id) +{ + hid_t did=-1; + hid_t gid=-1; + hid_t rid=-1; + hid_t sid=-1; + hsize_t dims[1]={2}; + + /*------------------------------------------------------------------------- + * H5G_DATASET + *------------------------------------------------------------------------- + */ + if ((sid = H5Screate_simple(1, dims, NULL)) < 0) + goto out; + if ((did = H5Dcreate2(loc_id, "dset", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5G_GROUP + *------------------------------------------------------------------------- + */ + if ((gid = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if ((rid = H5Gopen2(loc_id, "/", H5P_DEFAULT)) < 0) + goto out; + + /*------------------------------------------------------------------------- + * write a series of attributes on the dataset, group, and root group + *------------------------------------------------------------------------- + */ + + if ( write_attr_in(did,"dset",loc_id,0) < 0) + goto out; + if (write_attr_in(gid,"dset",loc_id,0) < 0) + goto out; + if (write_attr_in(rid,"dset",loc_id,0) < 0) + goto out; + + /* close */ + if (H5Dclose(did) < 0) + goto out; + if (H5Gclose(gid) < 0) + goto out; + if (H5Gclose(rid) < 0) + goto out; + if (H5Sclose(sid) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY + { + H5Dclose(did); + H5Gclose(gid); + H5Gclose(rid); + H5Sclose(sid); + } H5E_END_TRY; + return -1; + +} + +/*------------------------------------------------------------------------- +* Function: make_hlinks +* +* Purpose: make a test file with hard links +* +*------------------------------------------------------------------------- +*/ +static +int make_hlinks(hid_t loc_id) +{ + hid_t g1id=-1; + hid_t g2id=-1; + hid_t g3id=-1; + hsize_t dims[2]={3,2}; + int buf[3][2]= {{1,1},{1,2},{2,2}}; + + /*------------------------------------------------------------------------- + * create a dataset and some hard links to it + *------------------------------------------------------------------------- + */ + + if(write_dset(loc_id, 2, dims, "dset", H5T_NATIVE_INT, buf) < 0) + return -1; + if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link1 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0) + return -1; + if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link2 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0) + return -1; + if(H5Lcreate_hard(loc_id, "dset", H5L_SAME_LOC, "link3 to dset", H5P_DEFAULT, H5P_DEFAULT) < 0) + return -1; + + /*------------------------------------------------------------------------- + * create a group and some hard links to it + *------------------------------------------------------------------------- + */ + + if((g1id = H5Gcreate2(loc_id, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if((g2id = H5Gcreate2(g1id, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if((g3id = H5Gcreate2(g2id, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + + if(H5Lcreate_hard(loc_id, "g1", g2id, "link1 to g1", H5P_DEFAULT, H5P_DEFAULT) < 0) + goto out; + if(H5Lcreate_hard(g1id, "g2", g3id, "link1 to g2", H5P_DEFAULT, H5P_DEFAULT) < 0) + goto out; + + + /* close */ + if (H5Gclose(g1id) < 0) + goto out; + if (H5Gclose(g2id) < 0) + goto out; + if (H5Gclose(g3id) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY + { + H5Gclose(g1id); + H5Gclose(g2id); + H5Gclose(g3id); + } H5E_END_TRY; + return -1; + +} + + +/*------------------------------------------------------------------------- +* Function: make_szip +* +* Purpose: make a dataset with the SZIP filter +* +*------------------------------------------------------------------------- +*/ +#ifdef H5_HAVE_FILTER_SZIP +static +int make_szip(hid_t loc_id) +{ + hid_t dcpl; /* dataset creation property list */ + hid_t sid; /* dataspace ID */ + unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK; + unsigned szip_pixels_per_block=8; + hsize_t dims[RANK]={DIM1,DIM2}; + hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; + int buf[DIM1][DIM2]; + int i, j, n; + int szip_can_encode = 0; + + for (i=n=0; i<DIM1; i++) + { + for (j=0; j<DIM2; j++) + { + buf[i][j]=n++; + } + } + /* create a space */ + if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + return -1; + /* create a dcpl */ + if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + /* set up chunk */ + if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) + goto out; + + /*------------------------------------------------------------------------- + * SZIP + *------------------------------------------------------------------------- + */ + /* Make sure encoding is enabled */ + if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1) + { + szip_can_encode = 1; + } + if (szip_can_encode) + { + /* set szip data */ + if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block) < 0) + goto out; + if (make_dset(loc_id,"dset_szip",sid,dcpl,buf) < 0) + goto out; + } + else + { + /* WARNING? SZIP is decoder only, can't generate test files */ + } + + if(H5Sclose(sid) < 0) + goto out; + if(H5Pclose(dcpl) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY { + H5Pclose(dcpl); + H5Sclose(sid); + } H5E_END_TRY; + return -1; +} +#endif /* H5_HAVE_FILTER_SZIP */ + + + +/*------------------------------------------------------------------------- +* Function: make_deflate +* +* Purpose: make a dataset with the deflate filter +* +*------------------------------------------------------------------------- +*/ +static +int make_deflate(hid_t loc_id) +{ + hid_t dcpl; /* dataset creation property list */ + hid_t sid; /* dataspace ID */ + hsize_t dims[RANK]={DIM1,DIM2}; + hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; + int buf[DIM1][DIM2]; + hobj_ref_t bufref[1]; /* reference */ + hsize_t dims1r[1]={1}; + int i, j, n; + + for (i=n=0; i<DIM1; i++) + { + for (j=0; j<DIM2; j++) + { + buf[i][j]=n++; + } + } + + /* create a space */ + if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + return -1; + /* create a dcpl */ + if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + /* set up chunk */ + if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) + goto out; + + /*------------------------------------------------------------------------- + * GZIP + *------------------------------------------------------------------------- + */ +#if defined (H5_HAVE_FILTER_DEFLATE) + /* set deflate data */ + if(H5Pset_deflate(dcpl, 9) < 0) + goto out; + if (make_dset(loc_id,"dset_deflate",sid,dcpl,buf) < 0) + goto out; + + /* create a reference to the dataset, test second seeep of file for references */ + + if (H5Rcreate(&bufref[0],loc_id,"dset_deflate",H5R_OBJECT,(hid_t)-1) < 0) + goto out; + if (write_dset(loc_id,1,dims1r,"ref",H5T_STD_REF_OBJ,bufref) < 0) + goto out; +#endif + + + /*------------------------------------------------------------------------- + * close space and dcpl + *------------------------------------------------------------------------- + */ + if(H5Sclose(sid) < 0) + goto out; + if(H5Pclose(dcpl) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY { + H5Pclose(dcpl); + H5Sclose(sid); + } H5E_END_TRY; + return -1; +} + + +/*------------------------------------------------------------------------- +* Function: make_shuffle +* +* Purpose: make a dataset with the shuffle filter +* +*------------------------------------------------------------------------- +*/ +static +int make_shuffle(hid_t loc_id) +{ + hid_t dcpl; /* dataset creation property list */ + hid_t sid; /* dataspace ID */ + hsize_t dims[RANK]={DIM1,DIM2}; + hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; + int buf[DIM1][DIM2]; + int i, j, n; + + for (i=n=0; i<DIM1; i++) + { + for (j=0; j<DIM2; j++) + { + buf[i][j]=n++; + } + } + /* create a space */ + if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + return -1; + /* create a dcpl */ + if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + /* set up chunk */ + if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) + goto out; + + /*------------------------------------------------------------------------- + * shuffle + *------------------------------------------------------------------------- + */ + + /* set the shuffle filter */ + if (H5Pset_shuffle(dcpl) < 0) + goto out; + if (make_dset(loc_id,"dset_shuffle",sid,dcpl,buf) < 0) + goto out; + + + /*------------------------------------------------------------------------- + * close space and dcpl + *------------------------------------------------------------------------- + */ + if(H5Sclose(sid) < 0) + goto out; + if(H5Pclose(dcpl) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY { + H5Pclose(dcpl); + H5Sclose(sid); + } H5E_END_TRY; + return -1; +} + +/*------------------------------------------------------------------------- +* Function: make_fletcher32 +* +* Purpose: make a dataset with the fletcher32 filter +* +*------------------------------------------------------------------------- +*/ +static +int make_fletcher32(hid_t loc_id) +{ + hid_t dcpl; /* dataset creation property list */ + hid_t sid; /* dataspace ID */ + hsize_t dims[RANK]={DIM1,DIM2}; + hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; + int buf[DIM1][DIM2]; + int i, j, n; + + for (i=n=0; i<DIM1; i++) + { + for (j=0; j<DIM2; j++) + { + buf[i][j]=n++; + } + } + /* create a space */ + if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + return -1; + /* create a dataset creation property list; the same DCPL is used for all dsets */ + if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + /* set up chunk */ + if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) + goto out; + + + /*------------------------------------------------------------------------- + * fletcher32 + *------------------------------------------------------------------------- + */ + + /* remove the filters from the dcpl */ + if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0) + goto out; + /* set the checksum filter */ + if (H5Pset_fletcher32(dcpl) < 0) + goto out; + if (make_dset(loc_id,"dset_fletcher32",sid,dcpl,buf) < 0) + goto out; + + /*------------------------------------------------------------------------- + * close space and dcpl + *------------------------------------------------------------------------- + */ + if(H5Sclose(sid) < 0) + goto out; + if(H5Pclose(dcpl) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY { + H5Pclose(dcpl); + H5Sclose(sid); + } H5E_END_TRY; + return -1; +} + + +/*------------------------------------------------------------------------- +* Function: make_nbit +* +* Purpose: make a dataset with the nbit filter +* +*------------------------------------------------------------------------- +*/ +static +int make_nbit(hid_t loc_id) +{ + hid_t dcpl; /* dataset creation property list */ + hid_t sid; /* dataspace ID */ + hid_t dtid; + hid_t dsid; + hsize_t dims[RANK]={DIM1,DIM2}; + hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; + int buf[DIM1][DIM2]; + int i, j, n; + + for (i=n=0; i<DIM1; i++) + { + for (j=0; j<DIM2; j++) + { + buf[i][j]=n++; + } + } + /* create a space */ + if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + return -1; + /* create a dataset creation property list; the same DCPL is used for all dsets */ + if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + /* set up chunk */ + if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) + goto out; + + dtid = H5Tcopy(H5T_NATIVE_INT); + if (H5Tset_precision(dtid,(H5Tget_precision(dtid) - 1)) < 0) + { + H5Tclose(dtid); + goto out; + } + + /* remove the filters from the dcpl */ + if(H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) + { + H5Tclose(dtid); + goto out; + } + if(H5Pset_nbit(dcpl) < 0) { + H5Tclose(dtid); + goto out; + } + if((dsid = H5Dcreate2(loc_id, "dset_nbit", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) { + H5Tclose(dtid); + goto out; + } + if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) { + H5Tclose(dtid); + goto out; + } + H5Dclose(dsid); + + if(H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) { + H5Tclose(dtid); + goto out; + } + if((dsid = H5Dcreate2(loc_id, "dset_int31", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) { + H5Tclose(dtid); + goto out; + } + if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) { + H5Tclose(dtid); + goto out; + } + H5Dclose(dsid); + + /*------------------------------------------------------------------------- + * close + *------------------------------------------------------------------------- + */ + if(H5Sclose(sid) < 0) + goto out; + if(H5Pclose(dcpl) < 0) + goto out; + if (H5Tclose(dtid) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY { + H5Pclose(dcpl); + H5Sclose(sid); + } H5E_END_TRY; + return -1; +} + + +/*------------------------------------------------------------------------- +* Function: make_scaleoffset +* +* Purpose: make a dataset with the scaleoffset filter +* +*------------------------------------------------------------------------- +*/ +static +int make_scaleoffset(hid_t loc_id) +{ + hid_t dcpl; /* dataset creation property list */ + hid_t sid; /* dataspace ID */ + hid_t dtid; + hid_t dsid; + hsize_t dims[RANK]={DIM1,DIM2}; + hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; + int buf[DIM1][DIM2]; + int i, j, n; + + for (i=n=0; i<DIM1; i++) + { + for (j=0; j<DIM2; j++) + { + buf[i][j]=n++; + } + } + /* create a space */ + if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + return -1; + /* create a dataset creation property list; the same DCPL is used for all dsets */ + if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + /* set up chunk */ + if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) + goto out; + + dtid = H5Tcopy(H5T_NATIVE_INT); + + /* remove the filters from the dcpl */ + if(H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) { + H5Tclose(dtid); + goto out; + } + if(H5Pset_scaleoffset(dcpl, H5Z_SO_INT, 31) < 0) { + H5Tclose(dtid); + goto out; + } + if((dsid = H5Dcreate2(loc_id, "dset_scaleoffset", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) { + H5Tclose(dtid); + goto out; + } + if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) { + H5Tclose(dtid); + goto out; + } + H5Dclose(dsid); + if((dsid = H5Dcreate2(loc_id, "dset_none", dtid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) { + H5Tclose(dtid); + goto out; + } + if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) { + H5Tclose(dtid); + goto out; + } + H5Tclose(dtid); + H5Dclose(dsid); + + /*------------------------------------------------------------------------- + * close space and dcpl + *------------------------------------------------------------------------- + */ + if(H5Sclose(sid) < 0) + goto out; + if(H5Pclose(dcpl) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY { + H5Pclose(dcpl); + H5Sclose(sid); + } H5E_END_TRY; + return -1; +} + + +/*------------------------------------------------------------------------- +* Function: make_all_filters +* +* Purpose: make a file with all filters +* +*------------------------------------------------------------------------- +*/ +static +int make_all_filters(hid_t loc_id) +{ + hid_t dcpl; /* dataset creation property list */ + hid_t sid; /* dataspace ID */ + hid_t dtid; + hid_t dsid; +#if defined (H5_HAVE_FILTER_SZIP) + unsigned szip_options_mask=H5_SZIP_ALLOW_K13_OPTION_MASK|H5_SZIP_NN_OPTION_MASK; + unsigned szip_pixels_per_block=8; +#endif /* H5_HAVE_FILTER_SZIP */ + hsize_t dims[RANK]={DIM1,DIM2}; + hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; + int buf[DIM1][DIM2]; + int i, j, n; +#if defined (H5_HAVE_FILTER_SZIP) + int szip_can_encode = 0; +#endif + + for (i=n=0; i<DIM1; i++) + { + for (j=0; j<DIM2; j++) + { + buf[i][j]=n++; + } + } + /* create a space */ + if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + return -1; + /* create a dataset creation property list; the same DCPL is used for all dsets */ + if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + /* set up chunk */ + if (H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) + goto out; + + /* set the shuffle filter */ + if (H5Pset_shuffle(dcpl) < 0) + goto out; + + /* set the checksum filter */ + if (H5Pset_fletcher32(dcpl) < 0) + goto out; + +#if defined (H5_HAVE_FILTER_SZIP) + if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1) + { + szip_can_encode = 1; + } + if (szip_can_encode) + { + /* set szip data */ + if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block) < 0) + goto out; + } else { + /* WARNING? SZIP is decoder only, can't generate test data using szip */ + } +#endif + +#if defined (H5_HAVE_FILTER_DEFLATE) + /* set deflate data */ + if(H5Pset_deflate(dcpl, 9) < 0) + goto out; +#endif + + if (make_dset(loc_id,"dset_all",sid,dcpl,buf) < 0) + goto out; + + /* remove the filters from the dcpl */ + if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0) + goto out; + /* set the checksum filter */ + if (H5Pset_fletcher32(dcpl) < 0) + goto out; + if (make_dset(loc_id,"dset_fletcher32",sid,dcpl,buf) < 0) + goto out; + + + /* Make sure encoding is enabled */ +#if defined (H5_HAVE_FILTER_SZIP) + if (szip_can_encode) + { + /* remove the filters from the dcpl */ + if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0) + goto out; + /* set szip data */ + if(H5Pset_szip (dcpl,szip_options_mask,szip_pixels_per_block) < 0) + goto out; + if (make_dset(loc_id,"dset_szip",sid,dcpl,buf) < 0) + goto out; + } else + { + /* WARNING? SZIP is decoder only, can't generate test dataset */ + } +#endif + + + /* remove the filters from the dcpl */ + if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0) + goto out; + /* set the shuffle filter */ + if (H5Pset_shuffle(dcpl) < 0) + goto out; + if (make_dset(loc_id,"dset_shuffle",sid,dcpl,buf) < 0) + goto out; + + +#if defined (H5_HAVE_FILTER_DEFLATE) + /* remove the filters from the dcpl */ + if (H5Premove_filter(dcpl,H5Z_FILTER_ALL) < 0) + goto out; + /* set deflate data */ + if(H5Pset_deflate(dcpl, 1) < 0) + goto out; + if (make_dset(loc_id,"dset_deflate",sid,dcpl,buf) < 0) + goto out; +#endif + + + + /* remove the filters from the dcpl */ + if (H5Premove_filter(dcpl, H5Z_FILTER_ALL) < 0) + goto out; + /* set the shuffle filter */ + if (H5Pset_nbit(dcpl) < 0) + goto out; + if ((dtid = H5Tcopy(H5T_NATIVE_INT)) < 0) + goto out; + if (H5Tset_precision(dtid, (H5Tget_precision(dtid) - 1)) < 0) + goto out; + if((dsid = H5Dcreate2(loc_id, "dset_nbit", dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + goto out; + if(H5Dwrite(dsid, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) + goto out; + + /* close */ + if(H5Tclose(dtid) < 0) + return -1; + if(H5Dclose(dsid) < 0) + return -1; + + if(H5Sclose(sid) < 0) + goto out; + if(H5Pclose(dcpl) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY + { + H5Pclose(dcpl); + H5Sclose(sid); + } H5E_END_TRY; + return -1; +} + + + +/*------------------------------------------------------------------------- +* Function: make_early +* +* Purpose: create a file for the H5D_ALLOC_TIME_EARLY test +* +*------------------------------------------------------------------------- +*/ +static +int make_early(void) +{ + hsize_t dims[1] ={3000}; + hsize_t cdims[1]={30}; + hid_t fid=-1; + hid_t did=-1; + hid_t sid=-1; + hid_t tid=-1; + hid_t dcpl=-1; + int i; + char name[10]; + int iter=100; + + if ((fid = H5Fcreate(FNAME5, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + return -1; + if (H5Fclose(fid) < 0) + goto out; + + if ((sid = H5Screate_simple(1, dims, NULL)) < 0) + goto out; + if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + if (H5Pset_chunk(dcpl, 1, cdims) < 0) + goto out; + if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0) + goto out; + + for(i = 0; i < iter; i++) + { + if ((fid = H5Fopen(FNAME5, H5F_ACC_RDWR, H5P_DEFAULT)) < 0) + goto out; + if ((did = H5Dcreate2(fid, "early", H5T_NATIVE_DOUBLE, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + goto out; + if ((tid = H5Tcopy(H5T_NATIVE_DOUBLE)) < 0) + goto out; + sprintf(name, "%d", i); + if ((H5Tcommit2(fid, name, tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + if (H5Dclose(did) < 0) + goto out; + if (H5Ldelete(fid, "early", H5P_DEFAULT) < 0) + goto out; + if (H5Fclose(fid) < 0) + goto out; + } + + /*------------------------------------------------------------------------- + * do the same without close/opening the file and creating the dataset + *------------------------------------------------------------------------- + */ + + if ((fid = H5Fcreate(FNAME6, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + return -1; + + for(i = 0; i < iter; i++) + { + if ((tid = H5Tcopy(H5T_NATIVE_DOUBLE)) < 0) + goto out; + sprintf(name, "%d", i); + if ((H5Tcommit2(fid, name, tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + } + + if (H5Sclose(sid) < 0) + goto out; + if (H5Pclose(dcpl) < 0) + goto out; + if (H5Fclose(fid) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY + { + H5Tclose(tid); + H5Pclose(dcpl); + H5Sclose(sid); + H5Dclose(did); + H5Fclose(fid); + } H5E_END_TRY; + return -1; +} + + +/*------------------------------------------------------------------------- +* Function: make_layout +* +* Purpose: make several datasets with several layouts in location LOC_ID +* +*------------------------------------------------------------------------- +*/ +static +int make_layout(hid_t loc_id) +{ + hid_t dcpl=-1; /* dataset creation property list */ + hid_t sid=-1; /* dataspace ID */ + hsize_t dims[RANK]={DIM1,DIM2}; + hsize_t chunk_dims[RANK]={CDIM1,CDIM2}; + int buf[DIM1][DIM2]; + int i, j, n; + char name[6]; + + + for (i=n=0; i<DIM1; i++) + { + for (j=0; j<DIM2; j++) + { + buf[i][j]=n++; + } + } + + /*------------------------------------------------------------------------- + * make several dataset with no filters + *------------------------------------------------------------------------- + */ + for (i=0; i<4; i++) + { + sprintf(name,"dset%d",i+1); + if (write_dset(loc_id,RANK,dims,name,H5T_NATIVE_INT,buf) < 0) + return -1; + } + + + /*------------------------------------------------------------------------- + * make several dataset with several layout options + *------------------------------------------------------------------------- + */ + /* create a space */ + if((sid = H5Screate_simple(RANK, dims, NULL)) < 0) + return -1; + /* create a dataset creation property list; the same DCPL is used for all dsets */ + if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + { + goto out; + } + + /*------------------------------------------------------------------------- + * H5D_COMPACT + *------------------------------------------------------------------------- + */ + if(H5Pset_layout (dcpl,H5D_COMPACT) < 0) + goto out; + if (make_dset(loc_id,"dset_compact",sid,dcpl,buf) < 0) + { + goto out; + } + + /*------------------------------------------------------------------------- + * H5D_CONTIGUOUS + *------------------------------------------------------------------------- + */ + if(H5Pset_layout (dcpl,H5D_CONTIGUOUS) < 0) + goto out; + if (make_dset(loc_id,"dset_contiguous",sid,dcpl,buf) < 0) + { + goto out; + } + + /*------------------------------------------------------------------------- + * H5D_CHUNKED + *------------------------------------------------------------------------- + */ + if(H5Pset_chunk(dcpl, RANK, chunk_dims) < 0) + goto out; + if (make_dset(loc_id,"dset_chunk",sid,dcpl,buf) < 0) + { + goto out; + } + + /*------------------------------------------------------------------------- + * close space and dcpl + *------------------------------------------------------------------------- + */ + if(H5Sclose(sid) < 0) + goto out; + if(H5Pclose(dcpl) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY + { + H5Pclose(dcpl); + H5Sclose(sid); + } H5E_END_TRY; + return -1; +} + +/*------------------------------------------------------------------------- + * Function: make_layout2 + * + * Purpose: create datasets with contiguous and chunked layouts: + * + * contig_small: < 1k, fixed dims datspace + * chunked_small_fixed: < 1k, fixed dims dataspace + * + *------------------------------------------------------------------------- + */ +#define S_DIM1 4 +#define S_DIM2 10 +#define CONTIG_S "contig_small" +#define CHUNKED_S_FIX "chunked_small_fixed" + +static +int make_layout2(hid_t loc_id) +{ + + hid_t contig_dcpl = -1; /* dataset creation property list */ + hid_t chunked_dcpl = -1; /* dataset creation property list */ + + int i, j, n; /* Local index variables */ + int ret_value = -1; /* Return value */ + hid_t s_sid = -1; /* dataspace ID */ + + hsize_t s_dims[RANK] = {S_DIM1,S_DIM2}; /* Dataspace (< 1 k) */ + hsize_t chunk_dims[RANK] = {S_DIM1/2, S_DIM2/2}; /* Dimension sizes for chunks */ + + int s_buf[S_DIM1][S_DIM2]; /* Temporary buffer */ + + for(i = n = 0; i < S_DIM1; i++) { + for (j = 0; j < S_DIM2; j++) { + s_buf[i][j] = n++; + } + } + + /* Create dataspaces */ + if((s_sid = H5Screate_simple(RANK, s_dims, NULL)) < 0) + goto out; + + /* Create contiguous datasets */ + if((contig_dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + if(H5Pset_layout(contig_dcpl, H5D_CONTIGUOUS) < 0) + goto out; + if(make_dset(loc_id, CONTIG_S, s_sid, contig_dcpl, s_buf) < 0) + goto out; + + /* Create chunked datasets */ + if((chunked_dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + if(H5Pset_chunk(chunked_dcpl, RANK, chunk_dims) < 0) + goto out; + if(make_dset(loc_id, CHUNKED_S_FIX, s_sid, chunked_dcpl, s_buf) < 0) + goto out; + + ret_value = 0; + +out: + H5E_BEGIN_TRY { + H5Pclose(contig_dcpl); + H5Pclose(chunked_dcpl); + + H5Sclose(s_sid); + + } H5E_END_TRY; + + return(ret_value); + +} /* make_layout2() */ + +/*------------------------------------------------------------------------- +* Function: make_layout3 +* +* Purpose: make chunked datasets with unlimited max dim and chunk dim is +* bigger than current dim. (HDFFV-7933) +* Test for converting chunk to chunk , chunk to conti and chunk +* to compact. +* - The chunk to chunk changes layout bigger than any current dim +* again. +* - The chunk to compact test dataset bigger than 64K, should +* remain original layout.* +* +*------------------------------------------------------------------------- +*/ +#define DIM1_L3 300 +#define DIM2_L3 200 +/* small size */ +#define SDIM1_L3 4 +#define SDIM2_L3 50 +static +int make_layout3(hid_t loc_id) +{ + hid_t dcpl1=-1; /* dataset creation property list */ + hid_t dcpl2=-1; /* dataset creation property list */ + hid_t dcpl3=-1; /* dataset creation property list */ + hid_t sid1=-1; /* dataspace ID */ + hid_t sid2=-1; /* dataspace ID */ + hsize_t dims1[RANK]={DIM1_L3,DIM2_L3}; + hsize_t dims2[RANK]={SDIM1_L3,SDIM2_L3}; + hsize_t maxdims[RANK]={H5S_UNLIMITED, H5S_UNLIMITED}; + hsize_t chunk_dims1[RANK]={DIM1_L3*2,5}; + hsize_t chunk_dims2[RANK]={SDIM1_L3 + 2, SDIM2_L3/2}; + hsize_t chunk_dims3[RANK]={SDIM1_L3 - 2, SDIM2_L3/2}; + int buf1[DIM1_L3][DIM2_L3]; + int buf2[SDIM1_L3][SDIM2_L3]; + int i, j, n; + + /* init buf1 */ + for (i=n=0; i<DIM1_L3; i++) + { + for (j=0; j<DIM2_L3; j++) + { + buf1[i][j]=n++; + } + } + + /* init buf2 */ + for (i=n=0; i<SDIM1_L3; i++) + { + for (j=0; j<SDIM2_L3; j++) + { + buf2[i][j]=n++; + } + } + + /*------------------------------------------------------------------------- + * make chunked dataset with + * - dset maxdims are UNLIMIT + * - a chunk dim is bigger than dset dim + * - dset size bigger than compact max (64K) + *------------------------------------------------------------------------- + */ + /* create a space */ + if((sid1 = H5Screate_simple(RANK, dims1, maxdims)) < 0) + return -1; + /* create a dataset creation property list; the same DCPL is used for all dsets */ + if ((dcpl1 = H5Pcreate(H5P_DATASET_CREATE)) < 0) + { + goto out; + } + + if(H5Pset_chunk(dcpl1, RANK, chunk_dims1) < 0) + goto out; + if (make_dset(loc_id,"chunk_unlimit1",sid1,dcpl1,buf1) < 0) + { + goto out; + } + + /*------------------------------------------------------------------------- + * make chunked dataset with + * - dset maxdims are UNLIMIT + * - a chunk dim is bigger than dset dim + * - dset size smaller than compact (64K) + *------------------------------------------------------------------------- + */ + + /* create a space */ + if((sid2 = H5Screate_simple(RANK, dims2, maxdims)) < 0) + return -1; + /* create a dataset creation property list; the same DCPL is used for all dsets */ + if ((dcpl2 = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + + if(H5Pset_chunk(dcpl2, RANK, chunk_dims2) < 0) + goto out; + + if (make_dset(loc_id,"chunk_unlimit2",sid2,dcpl2,buf2) < 0) + goto out; + + /*------------------------------------------------------------------------- + * make chunked dataset with + * - dset maxdims are UNLIMIT + * - a chunk dims are smaller than dset dims + * - dset size smaller than compact (64K) + *------------------------------------------------------------------------- + */ + /* create a dataset creation property list; the same DCPL is used for all dsets */ + if ((dcpl3 = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + + if(H5Pset_chunk(dcpl3, RANK, chunk_dims3) < 0) + goto out; + + if (make_dset(loc_id,"chunk_unlimit3",sid2,dcpl3,buf2) < 0) + goto out; + + /*------------------------------------------------------------------------- + * close space and dcpl + *------------------------------------------------------------------------- + */ + if(H5Sclose(sid1) < 0) + goto out; + if(H5Sclose(sid2) < 0) + goto out; + if(H5Pclose(dcpl1) < 0) + goto out; + if(H5Pclose(dcpl2) < 0) + goto out; + if(H5Pclose(dcpl3) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY + { + H5Sclose(sid1); + H5Sclose(sid2); + H5Pclose(dcpl1); + H5Pclose(dcpl2); + H5Pclose(dcpl3); + } H5E_END_TRY; + return -1; +} + +/*------------------------------------------------------------------------- +* Function: make a file with an integer dataset with a fill value +* +* Purpose: test copy of fill values +* +*------------------------------------------------------------------------- +*/ +static +int make_fill(hid_t loc_id) +{ + hid_t did=-1; + hid_t sid=-1; + hid_t dcpl; + hsize_t dims[2]={3,2}; + int buf[3][2]= {{1,1},{1,2},{2,2}}; + int fillvalue = 2; + + /*------------------------------------------------------------------------- + * H5T_INTEGER, write a fill value + *------------------------------------------------------------------------- + */ + if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + if(H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillvalue) < 0) + goto out; + if((sid = H5Screate_simple(2,dims,NULL)) < 0) + goto out; + if((did = H5Dcreate2(loc_id, "dset_fill", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + goto out; + if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) + goto out; + + /* close */ + if(H5Sclose(sid) < 0) + goto out; + if(H5Pclose(dcpl) < 0) + goto out; + if(H5Dclose(did) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY { + H5Pclose(dcpl); + H5Sclose(sid); + H5Dclose(did); + } H5E_END_TRY; + return -1; + +} + +/*------------------------------------------------------------------------- +* Function: make_big +* +* Purpose: used in test read by hyperslabs. Creates a 128MB dataset. +* Only 1 1024Kb hyperslab is written. +* +*------------------------------------------------------------------------- +*/ +static +int make_big(hid_t loc_id) +{ + hid_t did=-1; + hid_t f_sid=-1; + hid_t m_sid=-1; + hid_t tid; + hid_t dcpl; + hsize_t dims[1]={ H5TOOLS_MALLOCSIZE + 1}; /* dataset dimensions */ + hsize_t hs_size[1]; /* hyperslab dimensions */ + hsize_t hs_start[1]; /* hyperslab start */ + hsize_t chunk_dims[1]={1024}; /* chunk dimensions */ + size_t size; + size_t nelmts=(size_t)1024; + signed char fillvalue=-1; + signed char *buf=NULL; + + /* write one 1024 byte hyperslab */ + hs_start[0] = 0; + hs_size[0] = 1024; + + /* create */ + if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + if(H5Pset_fill_value(dcpl, H5T_NATIVE_SCHAR, &fillvalue) < 0) + goto out; + if(H5Pset_chunk(dcpl, 1, chunk_dims) < 0) + goto out; + if((f_sid = H5Screate_simple(1,dims,NULL)) < 0) + goto out; + if((did = H5Dcreate2(loc_id, "dset", H5T_NATIVE_SCHAR, f_sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + goto out; + if((m_sid = H5Screate_simple(1, hs_size, hs_size)) < 0) + goto out; + if((tid = H5Dget_type(did)) < 0) + goto out; + if((size = H5Tget_size(tid))<=0) + goto out; + + /* initialize buffer to 0 */ + buf=(signed char *) HDcalloc( nelmts, size); + + if (H5Sselect_hyperslab (f_sid,H5S_SELECT_SET,hs_start,NULL,hs_size, NULL) < 0) + goto out; + if (H5Dwrite (did,H5T_NATIVE_SCHAR,m_sid,f_sid,H5P_DEFAULT,buf) < 0) + goto out; + + HDfree(buf); + buf=NULL; + + /* close */ + if(H5Sclose(f_sid) < 0) + goto out; + if(H5Sclose(m_sid) < 0) + goto out; + if(H5Pclose(dcpl) < 0) + goto out; + if(H5Dclose(did) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY { + H5Pclose(dcpl); + H5Sclose(f_sid); + H5Sclose(m_sid); + H5Dclose(did); + } H5E_END_TRY; + return -1; + +} + + +/*------------------------------------------------------------------------- +* Function: make_external +* +* Purpose: create a external dataset +* +*------------------------------------------------------------------------- +*/ +static +int make_external(hid_t loc_id) +{ + hid_t did=-1; + hid_t sid=-1; + hid_t dcpl; + int buf[2]={1,2}; + hsize_t cur_size[1]; /* data space current size */ + hsize_t max_size[1]; /* data space maximum size */ + hsize_t size; + + cur_size[0] = max_size[0] = 2; + size = max_size[0] * sizeof(int); + + /* create */ + if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + if(H5Pset_external(dcpl, H5REPACK_EXTFILE, (off_t)0, size) < 0) + goto out; + if((sid = H5Screate_simple(1,cur_size, max_size)) < 0) + goto out; + if((did = H5Dcreate2(loc_id, "external", H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + goto out; + if(H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) + goto out; + + /* close */ + if(H5Sclose(sid) < 0) + goto out; + if(H5Pclose(dcpl) < 0) + goto out; + if(H5Dclose(did) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY + { + H5Pclose(dcpl); + H5Sclose(sid); + H5Dclose(did); + } H5E_END_TRY; + return -1; + +} + +/*------------------------------------------------------------------------- +* Function: make_userblock +* +* Purpose: create a file for the userblock copying test +* +*------------------------------------------------------------------------- +*/ +static int +make_userblock(void) +{ + hid_t fid = -1; + hid_t fcpl = -1; + int fd = -1; /* File descriptor for writing userblock */ + char ub[USERBLOCK_SIZE]; /* User block data */ + ssize_t nwritten; /* # of bytes written */ + size_t u; /* Local index variable */ + + /* Create file creation property list with userblock set */ + if((fcpl = H5Pcreate(H5P_FILE_CREATE)) < 0) + goto out; + if(H5Pset_userblock(fcpl, (hsize_t)USERBLOCK_SIZE) < 0) + goto out; + + /* Create file with userblock */ + if((fid = H5Fcreate(FNAME16, H5F_ACC_TRUNC, fcpl, H5P_DEFAULT)) < 0) + goto out; + if(H5Fclose(fid) < 0) + goto out; + + /* Close file creation property list */ + if(H5Pclose(fcpl) < 0) + goto out; + + + /* Initialize userblock data */ + for(u = 0; u < USERBLOCK_SIZE; u++) + ub[u] = (char)('a' + (char)(u % 26)); + + /* Re-open HDF5 file, as "plain" file */ + if((fd = HDopen(FNAME16, O_WRONLY, 0644)) < 0) + goto out; + + /* Write userblock data */ + nwritten = HDwrite(fd, ub, (size_t)USERBLOCK_SIZE); + HDassert(nwritten == USERBLOCK_SIZE); + + /* Close file */ + HDclose(fd); + + return 0; + +out: + H5E_BEGIN_TRY { + H5Pclose(fcpl); + H5Fclose(fid); + } H5E_END_TRY; + if(fd > 0) + HDclose(fd); + + return -1; +} /* end make_userblock() */ + +/*------------------------------------------------------------------------- +* Function: verify_userblock +* +* Purpose: Verify that the userblock was copied correctly +* +*------------------------------------------------------------------------- +*/ +static int +verify_userblock( const char* filename) +{ + hid_t fid = -1; + hid_t fcpl = -1; + int fd = -1; /* File descriptor for writing userblock */ + char ub[USERBLOCK_SIZE]; /* User block data */ + hsize_t ub_size = 0; /* User block size */ + ssize_t nread; /* # of bytes read */ + size_t u; /* Local index variable */ + + /* Open file with userblock */ + if((fid = H5Fopen(filename, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0) + goto out; + + /* Retrieve file creation property list & userblock size */ + if((fcpl = H5Fget_create_plist(fid)) < 0) + goto out; + if(H5Pget_userblock(fcpl, &ub_size) < 0) + goto out; + + /* Verify userblock size is correct */ + if(ub_size != USERBLOCK_SIZE) + goto out; + + /* Close file creation property list */ + if(H5Pclose(fcpl) < 0) + goto out; + + if(H5Fclose(fid) < 0) + goto out; + + + /* Re-open HDF5 file, as "plain" file */ + if((fd = HDopen(filename, O_RDONLY, 0)) < 0) + goto out; + + /* Read userblock data */ + nread = HDread(fd, ub, (size_t)USERBLOCK_SIZE); + HDassert(nread == USERBLOCK_SIZE); + + /* Verify userblock data */ + for(u = 0; u < USERBLOCK_SIZE; u++) + if(ub[u] != (char)('a' + (u % 26))) + goto out; + + /* Close file */ + HDclose(fd); + + return 0; + +out: + H5E_BEGIN_TRY { + H5Pclose(fcpl); + H5Fclose(fid); + } H5E_END_TRY; + if(fd > 0) + HDclose(fd); + + return -1; +} /* end verify_userblock() */ + + +/*------------------------------------------------------------------------- +* Function: make_userblock_file +* +* Purpose: create a file for the userblock add test +* +*------------------------------------------------------------------------- +*/ +static int +make_userblock_file(void) +{ + int fd = -1; /* File descriptor for writing userblock */ + char ub[USERBLOCK_SIZE]; /* User block data */ + ssize_t nwritten; /* # of bytes written */ + size_t u; /* Local index variable */ + + /* initialize userblock data */ + for(u = 0; u < USERBLOCK_SIZE; u++) + ub[u] = (char)('a' + (char)(u % 26)); + + /* open file */ + if((fd = HDopen(FNAME_UB,O_WRONLY|O_CREAT|O_TRUNC, 0644 )) < 0) + goto out; + + /* write userblock data */ + nwritten = HDwrite(fd, ub, (size_t)USERBLOCK_SIZE); + HDassert(nwritten == USERBLOCK_SIZE); + + /* close file */ + HDclose(fd); + + return 0; + +out: + + if(fd > 0) + HDclose(fd); + + return -1; +} + +/*------------------------------------------------------------------------- +* Function: write_dset_in +* +* Purpose: write datasets in LOC_ID +* +* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu +* +* Date: November 12, 2003 +* +*------------------------------------------------------------------------- +*/ +static +int write_dset_in(hid_t loc_id, + const char* dset_name, /* for saving reference to dataset*/ + hid_t file_id, + int make_diffs /* flag to modify data buffers */) +{ + /* compound datatype */ + typedef struct s_t + { + char a; + double b; + } s_t; + + typedef enum + { + RED, + GREEN + } e_t; + + hid_t did=-1; + hid_t sid=-1; + hid_t tid=-1; + hid_t pid=-1; + unsigned i, j; + int val, k, n; + float f; + + /* create 1D attributes with dimension [2], 2 elements */ + hsize_t dims[1]={2}; + hsize_t dims1r[1]={2}; + char buf1[2][3]= {"ab","de"}; /* string */ + char buf2[2]= {1,2}; /* bitfield, opaque */ + s_t buf3[2]= {{1,2},{3,4}}; /* compound */ + hobj_ref_t buf4[2]; /* reference */ + e_t buf45[2]= {RED,GREEN}; /* enum */ + hvl_t buf5[2]; /* vlen */ + hsize_t dimarray[1]={3}; /* array dimension */ + int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ + int buf7[2]= {1,2}; /* integer */ + float buf8[2]= {1,2}; /* float */ + + /* create 2D attributes with dimension [3][2], 6 elements */ + hsize_t dims2[2]={3,2}; + hsize_t dims2r[2]={1,1}; + char buf12[6][3]= {"ab","cd","ef","gh","ij","kl"}; /* string */ + char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */ + s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */ + hobj_ref_t buf42[1][1]; /* reference */ + hvl_t buf52[3][2]; /* vlen */ + int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ + int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ + float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */ + + /* create 3D attributes with dimension [4][3][2], 24 elements */ + hsize_t dims3[3]={4,3,2}; + hsize_t dims3r[3]={1,1,1}; + char buf13[24][3]= {"ab","cd","ef","gh","ij","kl","mn","pq", + "rs","tu","vw","xz","AB","CD","EF","GH", + "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */ + char buf23[4][3][2]; /* bitfield, opaque */ + s_t buf33[4][3][2]; /* compound */ + hobj_ref_t buf43[1][1][1]; /* reference */ + hvl_t buf53[4][3][2]; /* vlen */ + int buf63[24][3]; /* array */ + int buf73[4][3][2]; /* integer */ + float buf83[4][3][2]; /* float */ + + + /*------------------------------------------------------------------------- + * 1D + *------------------------------------------------------------------------- + */ + + /*------------------------------------------------------------------------- + * H5T_STRING + *------------------------------------------------------------------------- + */ + + + if(make_diffs) { + for(i = 0; i < 2; i++) + for(j = 0; j < 2; j++) + buf1[i][j] = 'z'; + } + + + if ((tid = H5Tcopy(H5T_C_S1)) < 0) + goto out; + if (H5Tset_size(tid, (size_t)2) < 0) + goto out; + if (write_dset(loc_id,1,dims,"string",tid,buf1) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + + /* create hard link */ + if (H5Lcreate_hard(loc_id, "string", H5L_SAME_LOC, "string_link", H5P_DEFAULT, H5P_DEFAULT) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ + + if(make_diffs) { + for(i = 0; i < 2; i++) + buf2[i] = buf2[1] = 0; + } + + if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) + goto out; + if (write_dset(loc_id,1,dims,"bitfield",tid,buf2) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ + + if(make_diffs) { + for(i = 0; i < 2; i++) { + buf3[i].a = 0; + buf3[i].b = 0; + } + } + + if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0) + goto out; + if (H5Tset_tag(tid, "1-byte opaque type") < 0) + goto out; + if (write_dset(loc_id,1,dims,"opaque",tid,buf2) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + + + if(make_diffs) { + for(i = 0; i < 2; i++) + buf45[i] = GREEN; + } + + if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) + goto out; + if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) + goto out; + if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) + goto out; + if (write_dset(loc_id,1,dims,"compound",tid,buf3) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_REFERENCE + *------------------------------------------------------------------------- + */ + /* object references ( H5R_OBJECT ) */ + buf4[0]=0; + buf4[1]=0; + if (dset_name) + { + if (H5Rcreate(&buf4[0],file_id,dset_name,H5R_OBJECT,(hid_t)-1) < 0) + goto out; + if (write_dset(loc_id,1,dims1r,"refobj",H5T_STD_REF_OBJ,buf4) < 0) + goto out; + } + + /* Dataset region reference ( H5R_DATASET_REGION ) */ + if (make_dset_reg_ref(loc_id) < 0) + goto out; + + + /*------------------------------------------------------------------------- + * H5T_ENUM + *------------------------------------------------------------------------- + */ + if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) + goto out; + if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) + goto out; + if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) + goto out; + if (write_dset(loc_id,1,dims,"enum",tid,buf45) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_VLEN + *------------------------------------------------------------------------- + */ + + /* Allocate and initialize VL dataset to write */ + + buf5[0].len = 1; + buf5[0].p = HDmalloc( 1 * sizeof(int)); + ((int *)buf5[0].p)[0]=1; + buf5[1].len = 2; + buf5[1].p = HDmalloc( 2 * sizeof(int)); + ((int *)buf5[1].p)[0] = 2; + ((int *)buf5[1].p)[1] = 3; + + if(make_diffs) { + ((int *)buf5[0].p)[0] = 0; + ((int *)buf5[1].p)[0] = 0; + ((int *)buf5[1].p)[1] = 0; + } + + if ((sid = H5Screate_simple(1, dims, NULL)) < 0) + goto out; + if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0) + goto out; + if ((did = H5Dcreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf5) < 0) + goto out; + if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5) < 0) + goto out; + if (H5Dclose(did) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + if (H5Sclose(sid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + + if(make_diffs) { + for(i = 0; i < 2; i++) + for(j = 0; j < 3; j++) + buf6[i][j] = 0; + } + + if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0) + goto out; + if (write_dset(loc_id, 1, dims, "array", tid, buf6) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + { + + hsize_t TEST_BUFSIZE = (128 * 1024 * 1024); /* 128MB */ + double *dbuf; /* information to write */ + size_t size; + hsize_t sdims[] = {1}; + hsize_t tdims[] = {TEST_BUFSIZE / sizeof(double) + 1}; + unsigned u; + + /* allocate and initialize array data to write */ + size = ( TEST_BUFSIZE / sizeof(double) + 1 ) * sizeof(double); + dbuf = (double*)HDmalloc( size ); + if (NULL == dbuf) + { + printf ("\nError: Cannot allocate memory for \"arrayd\" data buffer size %dMB.\n", (int) size / 1000000 ); + goto out; + } + + for( u = 0; u < TEST_BUFSIZE / sizeof(double) + 1; u++) + dbuf[u] = u; + + if (make_diffs) + { + dbuf[5] = 0; + dbuf[6] = 0; + } + + /* create a type larger than TEST_BUFSIZE */ + if ((tid = H5Tarray_create2(H5T_NATIVE_DOUBLE, 1, tdims)) < 0) + goto out; + size = H5Tget_size(tid); + if ((sid = H5Screate_simple(1, sdims, NULL)) < 0) + goto out; + if ((did = H5Dcreate2(loc_id, "arrayd", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; +#if defined(WRITE_ARRAY) + H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, dbuf); +#endif + + /* close */ + H5Dclose(did); + H5Tclose(tid); + H5Sclose(sid); + HDfree( dbuf ); + } + + /*------------------------------------------------------------------------- + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ + + if(make_diffs) { + for(i = 0; i < 2; i++) { + buf7[i] = 0; + buf8[i] = 0; + } + } + + if (write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7) < 0) + goto out; + if (write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8) < 0) + goto out; + + + /*------------------------------------------------------------------------- + * 2D + *------------------------------------------------------------------------- + */ + + /*------------------------------------------------------------------------- + * H5T_STRING + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + HDmemset(buf12, 'z', sizeof buf12); + } + + + if ((tid = H5Tcopy(H5T_C_S1)) < 0) + goto out; + if (H5Tset_size(tid, (size_t)2) < 0) + goto out; + if (write_dset(loc_id,2,dims2,"string2D",tid,buf12) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ + + + if (make_diffs) + { + HDmemset(buf22,0,sizeof buf22); + } + + if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) + goto out; + if (write_dset(loc_id,2,dims2,"bitfield2D",tid,buf22) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ + if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0) + goto out; + if (H5Tset_tag(tid, "1-byte opaque type") < 0) + goto out; + if (write_dset(loc_id,2,dims2,"opaque2D",tid,buf22) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + HDmemset(buf32,0,sizeof buf32); + } + + if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) + goto out; + if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) + goto out; + if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) + goto out; + if (write_dset(loc_id,2,dims2,"compound2D",tid,buf32) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_REFERENCE + *------------------------------------------------------------------------- + */ + /* Create references to dataset */ + if (dset_name) + { + if (H5Rcreate(&buf42[0][0], file_id, dset_name, H5R_OBJECT, (hid_t)-1) < 0) + goto out; + if (write_dset(loc_id, 2, dims2r, "refobj2D", H5T_STD_REF_OBJ, buf42) < 0) + goto out; + } + + /*------------------------------------------------------------------------- + * H5T_ENUM + *------------------------------------------------------------------------- + */ + + if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) + goto out; + if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) + goto out; + if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) + goto out; + if (write_dset(loc_id,2,dims2,"enum2D",tid,0) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_VLEN + *------------------------------------------------------------------------- + */ + + /* Allocate and initialize VL dataset to write */ + n = 0; + for(i = 0; i < 3; i++) { + for(j = 0; j < 2; j++) { + unsigned l; + + buf52[i][j].p = HDmalloc((i + 1) * sizeof(int)); + buf52[i][j].len = (size_t)(i + 1); + for(l = 0; l < i + 1; l++) { + if(make_diffs) + ((int *)buf52[i][j].p)[l] = 0; + else + ((int *)buf52[i][j].p)[l] = n++; + } + } + } + + if ((sid = H5Screate_simple(2, dims2, NULL)) < 0) + goto out; + if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0) + goto out; + if ((did = H5Dcreate2(loc_id, "vlen2D", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf52) < 0) + goto out; + if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf52) < 0) + goto out; + if (H5Dclose(did) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + if (H5Sclose(sid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + HDmemset(buf62,0,sizeof buf62); + } + + + if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0) + goto out; + if (write_dset(loc_id, 2, dims2, "array2D", tid, buf62) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_INTEGER, write a fill value + *------------------------------------------------------------------------- + */ + + + if(make_diffs) { + HDmemset(buf72, 0, sizeof buf72); + HDmemset(buf82, 0, sizeof buf82); + } + + + if ((pid = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + if ((sid = H5Screate_simple(2, dims2, NULL)) < 0) + goto out; + if ((did = H5Dcreate2(loc_id, "integer2D", H5T_NATIVE_INT, sid, H5P_DEFAULT, pid, H5P_DEFAULT)) < 0) + goto out; + if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf72) < 0) + goto out; + if (H5Pclose(pid) < 0) + goto out; + if (H5Dclose(did) < 0) + goto out; + if (H5Sclose(sid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_FLOAT + *------------------------------------------------------------------------- + */ + + if (write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82) < 0) + goto out; + + + /*------------------------------------------------------------------------- + * 3D + *------------------------------------------------------------------------- + */ + + /*------------------------------------------------------------------------- + * H5T_STRING + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + HDmemset(buf13,'z',sizeof buf13); + } + + if ((tid = H5Tcopy(H5T_C_S1)) < 0) + goto out; + if (H5Tset_size(tid, (size_t)2) < 0) + goto out; + if (write_dset(loc_id,3,dims3,"string3D",tid,buf13) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ + + + n=1; + for(i = 0; i < 4; i++) { + for(j = 0; j < 3; j++) { + for(k = 0; k < 2; k++) { + if(make_diffs) + buf23[i][j][k] = 0; + else + buf23[i][j][k] = (char)(n++); + } + } + } + + + if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) + goto out; + if (write_dset(loc_id,3,dims3,"bitfield3D",tid,buf23) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ + if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0) + goto out; + if (H5Tset_tag(tid, "1-byte opaque type") < 0) + goto out; + if (write_dset(loc_id,3,dims3,"opaque3D",tid,buf23) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + + n=1; + for(i = 0; i < 4; i++) { + for(j = 0; j < 3; j++) { + for(k = 0; k < 2; k++) { + if(make_diffs) { + buf33[i][j][k].a = 0; + buf33[i][j][k].b = 0; + } + else { + buf33[i][j][k].a = (char)(n++); + buf33[i][j][k].b = n++; + } + } + } + } + + + if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) + goto out; + if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) + goto out; + if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) + goto out; + if (write_dset(loc_id,3,dims3,"compound3D",tid,buf33) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_REFERENCE + *------------------------------------------------------------------------- + */ + /* Create references to dataset */ + if (dset_name) + { + if (H5Rcreate(&buf43[0][0][0], file_id, dset_name, H5R_OBJECT, (hid_t)-1) < 0) + goto out; + if (write_dset(loc_id, 3, dims3r, "refobj3D", H5T_STD_REF_OBJ, buf43) < 0) + goto out; + } + + /*------------------------------------------------------------------------- + * H5T_ENUM + *------------------------------------------------------------------------- + */ + + if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) + goto out; + if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) + goto out; + if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) + goto out; + if (write_dset(loc_id,3,dims3,"enum3D",tid,0) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_VLEN + *------------------------------------------------------------------------- + */ + + /* Allocate and initialize VL dataset to write */ + n = 0; + for(i = 0; i < 4; i++) { + for(j = 0; j < 3; j++) { + for(k = 0; k < 2; k++) { + unsigned l; + + buf53[i][j][k].p = HDmalloc((i + 1) * sizeof(int)); + buf53[i][j][k].len = (size_t)(i + 1); + for(l = 0; l < i + 1; l++) { + if(make_diffs) + ((int *)buf53[i][j][k].p)[l] = 0; + else + ((int *)buf53[i][j][k].p)[l] = n++; + } + } + } + } + + if ((sid = H5Screate_simple(3, dims3, NULL)) < 0) + goto out; + if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0) + goto out; + if ((did = H5Dcreate2(loc_id, "vlen3D", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if (H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf53) < 0) + goto out; + + if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf53) < 0) + goto out; + + if (H5Dclose(did) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + if (H5Sclose(sid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + + + n = 1; + for(i = 0; i < 24; i++) { + for(j = 0; j < dimarray[0]; j++) { + if(make_diffs) + buf63[i][j] = 0; + else + buf63[i][j] = n++; + } + } + + if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0) + goto out; + if (write_dset(loc_id, 3, dims3, "array3D", tid, buf63) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + + /*------------------------------------------------------------------------- + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ + n=1; f=1; + for (i = 0; i < 4; i++) { + for (j = 0; j < 3; j++) { + for (k = 0; k < 2; k++) { + if (make_diffs) { + buf73[i][j][k]=0; + buf83[i][j][k]=0; + } + else { + buf73[i][j][k]=n++; + buf83[i][j][k]=f++; + } + } + } + } + if (write_dset(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73) < 0) + goto out; + if (write_dset(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY { + H5Pclose(pid); + H5Sclose(sid); + H5Dclose(did); + H5Tclose(tid); + } H5E_END_TRY; + return -1; +} + + + +/*------------------------------------------------------------------------- +* Function: make_dset_reg_ref +* +* Purpose: write dataset region references +* +*------------------------------------------------------------------------- +*/ + +#define SPACE1_RANK 1 +#define SPACE1_DIM1 1 +#define SPACE2_RANK 2 +#define SPACE2_DIM1 10 +#define SPACE2_DIM2 10 +static +int make_dset_reg_ref(hid_t loc_id) +{ + hid_t did1=-1; /* Dataset ID */ + hid_t did2=-1; /* Dereferenced dataset ID */ + hid_t sid1=-1; /* Dataspace ID #1 */ + hid_t sid2=-1; /* Dataspace ID #2 */ + hsize_t dims1[] = {SPACE1_DIM1}; + hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2}; + hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */ + hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */ + hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */ + hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */ + hdset_reg_ref_t *wbuf=NULL; /* buffer to write to disk */ + int *dwbuf=NULL; /* Buffer for writing numeric data to disk */ + int i; /* counting variables */ + int retval = -1; /* return value */ + + /* Allocate write & read buffers */ + wbuf = (hdset_reg_ref_t *)HDcalloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1); + dwbuf = (int *)HDmalloc(sizeof(int) * SPACE2_DIM1 * SPACE2_DIM2); + + /* Create dataspace for datasets */ + if ((sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL)) < 0) + goto out; + + /* Create a dataset */ + if ((did2 = H5Dcreate2(loc_id, "dsetreg", H5T_NATIVE_UCHAR, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + + for (i = 0; i < SPACE2_DIM1 * SPACE2_DIM2; i++) + dwbuf[i] = i * 3; + + /* Write selection to disk */ + if (H5Dwrite(did2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dwbuf) < 0) + goto out; + + /* Create dataspace for the reference dataset */ + if ((sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL)) < 0) + goto out; + + /* Create a dataset */ + if ((did1 = H5Dcreate2(loc_id, "refreg", H5T_STD_REF_DSETREG, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + + /* Select 6x6 hyperslab for first reference */ + start[0] = 2; start[1] = 2; + stride[0] = 1; stride[1] = 1; + count[0] = 6; count[1] = 6; + block[0] = 1; block[1] = 1; + if (H5Sselect_hyperslab(sid2, H5S_SELECT_SET, start, stride, count, block) < 0) + goto out; + + + /* Store dataset region */ + if (H5Rcreate(&wbuf[0], loc_id, "dsetreg", H5R_DATASET_REGION, sid2) < 0) + goto out; + + /* Write selection to disk */ + if (H5Dwrite(did1,H5T_STD_REF_DSETREG,H5S_ALL,H5S_ALL,H5P_DEFAULT,wbuf) < 0) + goto out; + + /* Close all objects */ + if (H5Sclose(sid1) < 0) + goto out; + if (H5Dclose(did1) < 0) + goto out; + if (H5Sclose(sid2) < 0) + goto out; + if (H5Dclose(did2) < 0) + goto out; + + retval = 0; + +out: + if(wbuf) + HDfree(wbuf); + if(dwbuf) + HDfree(dwbuf); + + H5E_BEGIN_TRY + { + H5Sclose(sid1); + H5Sclose(sid2); + H5Dclose(did1); + H5Dclose(did2); + } H5E_END_TRY; + + return retval; +} + +/*------------------------------------------------------------------------- +* Function: write_attr_in +* +* Purpose: write attributes in LOC_ID (dataset, group, named datatype) +* +* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu +* +* Date: November 12, 2003 +* +*------------------------------------------------------------------------- +*/ + +static +int write_attr_in(hid_t loc_id, + const char* dset_name, /* for saving reference to dataset*/ + hid_t fid, /* for reference create */ + int make_diffs /* flag to modify data buffers */) +{ + /* Compound datatype */ + typedef struct s_t + { + char a; + double b; + } s_t; + + typedef enum + { + RED, + GREEN + } e_t; + + hid_t aid = -1; + hid_t sid = -1; + hid_t tid = -1; + int val, j, k, n; + unsigned i; + float f; + + /* create 1D attributes with dimension [2], 2 elements */ + hsize_t dims[1]={2}; + char buf1[2][3]= {"ab","de"}; /* string */ + char buf2[2]= {1,2}; /* bitfield, opaque */ + s_t buf3[2]= {{1,2},{3,4}}; /* compound */ + hobj_ref_t buf4[2]; /* reference */ + e_t buf45[2]= {RED,RED}; /* enum */ + hvl_t buf5[2]; /* vlen */ + hsize_t dimarray[1]={3}; /* array dimension */ + int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */ + int buf7[2]= {1,2}; /* integer */ + float buf8[2]= {1,2}; /* float */ + + /* create 2D attributes with dimension [3][2], 6 elements */ + hsize_t dims2[2]={3,2}; + char buf12[6][3]= {"ab","cd","ef","gh","ij","kl"}; /* string */ + char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */ + s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */ + hobj_ref_t buf42[3][2]; /* reference */ + e_t buf452[3][2]; /* enum */ + hvl_t buf52[3][2]; /* vlen */ + int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */ + int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */ + float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */ + + /* create 3D attributes with dimension [4][3][2], 24 elements */ + hsize_t dims3[3]={4,3,2}; + char buf13[24][3]= {"ab","cd","ef","gh","ij","kl","mn","pq", + "rs","tu","vw","xz","AB","CD","EF","GH", + "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */ + char buf23[4][3][2]; /* bitfield, opaque */ + s_t buf33[4][3][2]; /* compound */ + hobj_ref_t buf43[4][3][2]; /* reference */ + e_t buf453[4][3][2]; /* enum */ + hvl_t buf53[4][3][2]; /* vlen */ + int buf63[24][3]; /* array */ + int buf73[4][3][2]; /* integer */ + float buf83[4][3][2]; /* float */ + + + /*------------------------------------------------------------------------- + * 1D attributes + *------------------------------------------------------------------------- + */ + + /*------------------------------------------------------------------------- + * H5T_STRING + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + for (i=0; i<2; i++) + for (j=0; j<2; j++) + { + buf1[i][j]='z'; + } + } + /* + buf1[2][2]= {"ab","de"}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <string> and <string> + position string of </g1> string of </g1> difference + ------------------------------------------------------------ + [ 0 ] a z + [ 0 ] b z + [ 1 ] d z + [ 1 ] e z + */ + if ((tid = H5Tcopy(H5T_C_S1)) < 0) + goto out; + if (H5Tset_size(tid, (size_t)2) < 0) + goto out; + if (make_attr(loc_id,1,dims,"string",tid,buf1) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + for (i=0; i<2; i++) + buf2[i]=buf2[1]=0; + } + /* + buf2[2]= {1,2}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <bitfield> and <bitfield> + position bitfield of </g1> bitfield of </g1> difference + position opaque of </g1> opaque of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 1 ] 2 0 2 + */ + + if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) + goto out; + if (make_attr(loc_id,1,dims,"bitfield",tid,buf2) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ + + /* + buf2[2]= {1,2}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <opaque> and <opaque> + position opaque of </g1> opaque of </g1> difference + position opaque of </g1> opaque of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 1 ] 2 0 2 + */ + + if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0) + goto out; + if (H5Tset_tag(tid, "1-byte opaque type") < 0) + goto out; + if (make_attr(loc_id,1,dims,"opaque",tid,buf2) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + for (i=0; i<2; i++) + { + buf3[i].a=0; buf3[i].b=0; + } + } + + /* + buf3[2]= {{1,2},{3,4}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <compound> and <compound> + position compound of </g1> compound of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 5 4 + [ 0 ] 2 5 3 + [ 1 ] 3 5 2 + [ 1 ] 4 5 1 + */ + + if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) + goto out; + if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) + goto out; + if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) + goto out; + if (make_attr(loc_id,1,dims,"compound",tid,buf3) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_REFERENCE + *------------------------------------------------------------------------- + */ + /* object references ( H5R_OBJECT */ + if (dset_name) + { + if (H5Rcreate(&buf4[0],fid,dset_name,H5R_OBJECT,(hid_t)-1) < 0) + goto out; + if (H5Rcreate(&buf4[1],fid,dset_name,H5R_OBJECT,(hid_t)-1) < 0) + goto out; + if (make_attr(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4) < 0) + goto out; + } + + + /*------------------------------------------------------------------------- + * H5T_ENUM + *------------------------------------------------------------------------- + */ + if (make_diffs) + { + for (i=0; i<2; i++) + { + buf45[i]=GREEN; + } + } + /* + buf45[2]= {RED,RED}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <enum> and <enum> + position enum of </g1> enum of </g1> difference + ------------------------------------------------------------ + [ 0 ] RED GREEN + [ 1 ] RED GREEN + */ + if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) + goto out; + if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) + goto out; + if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) + goto out; + if (make_attr(loc_id,1,dims,"enum",tid,buf45) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_VLEN + *------------------------------------------------------------------------- + */ + + /* Allocate and initialize VL dataset to write */ + + buf5[0].len = 1; + buf5[0].p = HDmalloc( 1 * sizeof(int)); + ((int *)buf5[0].p)[0]=1; + buf5[1].len = 2; + buf5[1].p = HDmalloc(2 * sizeof(int)); + ((int *)buf5[1].p)[0] = 2; + ((int *)buf5[1].p)[1] = 3; + + if(make_diffs) + { + ((int *)buf5[0].p)[0] = 0; + ((int *)buf5[1].p)[0] = 0; + ((int *)buf5[1].p)[1] = 0; + } + /* + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + position vlen of </g1> vlen of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 1 ] 2 0 2 + [ 1 ] 3 0 3 + */ + + if ((sid = H5Screate_simple(1, dims, NULL)) < 0) + goto out; + if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0) + goto out; + if ((aid = H5Acreate2(loc_id, "vlen", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if (H5Awrite(aid, tid, buf5) < 0) + goto out; + if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf5) < 0) + goto out; + if (H5Aclose(aid) < 0) + goto out; + aid = -1; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + if (H5Sclose(sid) < 0) + goto out; + sid = -1; + + /*------------------------------------------------------------------------- + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + for (i=0; i<2; i++) + for (j=0; j<3; j++) + { + buf6[i][j]=0; + } + } + /* + buf6[2][3]= {{1,2,3},{4,5,6}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <array> and <array> + position array of </g1> array of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 0 ] 2 0 2 + [ 0 ] 3 0 3 + [ 1 ] 4 0 4 + [ 1 ] 5 0 5 + [ 1 ] 6 0 6 + */ + if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0) + goto out; + if (make_attr(loc_id, 1, dims, "array", tid, buf6) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ + + if(make_diffs) + { + for(i = 0; i < 2; i++) + { + buf7[i]=0; + buf8[i]=0; + } + } + + /* + buf7[2]= {1,2}; + buf8[2]= {1,2}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + position integer of </g1> integer of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 1 ] 2 0 2 + position float of </g1> float of </g1> difference + ------------------------------------------------------------ + [ 0 ] 1 0 1 + [ 1 ] 2 0 2 + */ + if (make_attr(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7) < 0) + goto out; + if (make_attr(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8) < 0) + goto out; + + + /*------------------------------------------------------------------------- + * 2D attributes + *------------------------------------------------------------------------- + */ + + /*------------------------------------------------------------------------- + * H5T_STRING + *------------------------------------------------------------------------- + */ + if (make_diffs) + { + HDmemset(buf12, 'z', sizeof buf12); + } + + /* + buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: <string2D> and <string2D> + position string2D of </g1> string2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] a z + [ 0 0 ] b z + [ 0 1 ] c z + [ 0 1 ] d z + [ 1 0 ] e z + [ 1 0 ] f z + [ 1 1 ] g z + [ 1 1 ] h z + [ 2 0 ] i z + [ 2 0 ] j z + [ 2 1 ] k z + [ 2 1 ] l z + */ + + if ((tid = H5Tcopy(H5T_C_S1)) < 0) + goto out; + if (H5Tset_size(tid, (size_t)2) < 0) + goto out; + if (make_attr(loc_id,2,dims2,"string2D",tid,buf12) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + HDmemset(buf22,0,sizeof buf22); + } + + /* + buf22[3][2]= {{1,2},{3,4},{5,6}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: <bitfield2D> and <bitfield2D> + position bitfield2D of </g1> bitfield2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 1 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 2 0 ] 5 0 5 + [ 2 1 ] 6 0 6 + */ + + + if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) + goto out; + if (make_attr(loc_id,2,dims2,"bitfield2D",tid,buf22) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ + + /* + buf22[3][2]= {{1,2},{3,4},{5,6}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: <opaque2D> and <opaque2D> + position opaque2D of </g1> opaque2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 1 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 2 0 ] 5 0 5 + [ 2 1 ] 6 0 6 + */ + if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0) + goto out; + if (H5Tset_tag(tid, "1-byte opaque type") < 0) + goto out; + if (make_attr(loc_id,2,dims2,"opaque2D",tid,buf22) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + if (make_diffs) + { + HDmemset(buf32,0,sizeof buf32); + } + + /* + buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Attribute: <opaque2D> and <opaque2D> + position opaque2D of </g1> opaque2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 1 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 2 0 ] 5 0 5 + [ 2 1 ] 6 0 6 + */ + + + if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) + goto out; + if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) + goto out; + if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) + goto out; + if (make_attr(loc_id,2,dims2,"compound2D",tid,buf32) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_REFERENCE + *------------------------------------------------------------------------- + */ + /* Create references to dataset */ + if (dset_name) + { + for (i = 0; i < 3; i++) + { + for (j = 0; j < 2; j++) + { + if (H5Rcreate(&buf42[i][j],fid,dset_name,H5R_OBJECT,(hid_t)-1) < 0) + goto out; + } + } + if (make_attr(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42) < 0) + goto out; + } + + /*------------------------------------------------------------------------- + * H5T_ENUM + *------------------------------------------------------------------------- + */ + for (i=0; i<3; i++) + { + for (j=0; j<2; j++) + { + if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED; + } + } + + /* + Attribute: <enum2D> and <enum2D> + position enum2D of </g1> enum2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] RED GREEN + [ 0 1 ] RED GREEN + [ 1 0 ] RED GREEN + [ 1 1 ] RED GREEN + [ 2 0 ] RED GREEN + [ 2 1 ] RED GREEN + */ + + if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) + goto out; + if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) + goto out; + if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) + goto out; + if (make_attr(loc_id,2,dims2,"enum2D",tid,buf452) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_VLEN + *------------------------------------------------------------------------- + */ + + /* Allocate and initialize VL dataset to write */ + n=0; + for(i = 0; i < 3; i++) { + for(j = 0; j < 2; j++) { + unsigned l; + + buf52[i][j].p = HDmalloc((i + 1) * sizeof(int)); + buf52[i][j].len = (size_t)(i + 1); + for(l = 0; l < i + 1; l++) + if(make_diffs) + ((int *)buf52[i][j].p)[l] = 0; + else + ((int *)buf52[i][j].p)[l] = n++; + } + } + + /* + position vlen2D of </g1> vlen2D of </g1> difference + ------------------------------------------------------------ + [ 0 1 ] 1 0 1 + [ 1 0 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 1 1 ] 5 0 5 + [ 2 0 ] 6 0 6 + [ 2 0 ] 7 0 7 + [ 2 0 ] 8 0 8 + [ 2 1 ] 9 0 9 + [ 2 1 ] 10 0 10 + [ 2 1 ] 11 0 11 + */ + + if ((sid = H5Screate_simple(2, dims2, NULL)) < 0) + goto out; + if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0) + goto out; + if ((aid = H5Acreate2(loc_id, "vlen2D", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if (H5Awrite(aid, tid, buf52) < 0) + goto out; + if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf52) < 0) + goto out; + if (H5Aclose(aid) < 0) + goto out; + aid = -1; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + if (H5Sclose(sid) < 0) + goto out; + sid = -1; + + /*------------------------------------------------------------------------- + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + HDmemset(buf62,0,sizeof buf62); + } + /* + buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; + $h5diff file7.h5 file6.h5 g1 g1 -v + Group: </g1> and </g1> + Attribute: <array2D> and <array2D> + position array2D of </g1> array2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 0 ] 2 0 2 + [ 0 0 ] 3 0 3 + [ 0 1 ] 4 0 4 + [ 0 1 ] 5 0 5 + [ 0 1 ] 6 0 6 + [ 1 0 ] 7 0 7 + [ 1 0 ] 8 0 8 + [ 1 0 ] 9 0 9 + [ 1 1 ] 10 0 10 + [ 1 1 ] 11 0 11 + [ 1 1 ] 12 0 12 + [ 2 0 ] 13 0 13 + [ 2 0 ] 14 0 14 + [ 2 0 ] 15 0 15 + [ 2 1 ] 16 0 16 + [ 2 1 ] 17 0 17 + [ 2 1 ] 18 0 18 + */ + if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0) + goto out; + if (make_attr(loc_id, 2, dims2, "array2D", tid, buf62) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ + + if(make_diffs) + { + HDmemset(buf72, 0, sizeof buf72); + HDmemset(buf82, 0, sizeof buf82); + } + /* + Attribute: <integer2D> and <integer2D> + position integer2D of </g1> integer2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 1 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 2 0 ] 5 0 5 + [ 2 1 ] 6 0 6 + 6 differences found + Attribute: <float2D> and <float2D> + position float2D of </g1> float2D of </g1> difference + ------------------------------------------------------------ + [ 0 0 ] 1 0 1 + [ 0 1 ] 2 0 2 + [ 1 0 ] 3 0 3 + [ 1 1 ] 4 0 4 + [ 2 0 ] 5 0 5 + [ 2 1 ] 6 0 6 + */ + + if (make_attr(loc_id,2,dims2,"integer2D",H5T_NATIVE_INT,buf72) < 0) + goto out; + if (make_attr(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82) < 0) + goto out; + + + /*------------------------------------------------------------------------- + * 3D attributes + *------------------------------------------------------------------------- + */ + + /*------------------------------------------------------------------------- + * H5T_STRING + *------------------------------------------------------------------------- + */ + + if (make_diffs) + { + HDmemset(buf13,'z',sizeof buf13); + } + + /* + buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq", + "rs","tu","vw","xz","AB","CD","EF","GH", + "IJ","KL","MN","PQ","RS","TU","VW","XZ"}; + + Attribute: <string3D> and <string3D> + position string3D of </g1> string3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] a z + [ 0 0 0 ] b z + [ 0 0 1 ] c z + [ 0 0 1 ] d z + [ 0 1 0 ] e z + [ 0 1 0 ] f z + [ 0 1 1 ] g z + [ 0 1 1 ] h z + [ 0 2 0 ] i z + [ 0 2 0 ] j z + [ 0 2 1 ] k z + [ 0 2 1 ] l z + [ 1 0 0 ] m z + [ 1 0 0 ] n z + [ 1 0 1 ] p z + [ 1 0 1 ] q z + [ 1 1 0 ] r z + [ 1 1 0 ] s z + [ 1 1 1 ] t z + [ 1 1 1 ] u z + [ 1 2 0 ] v z + [ 1 2 0 ] w z + [ 1 2 1 ] x z + [ 2 0 0 ] A z + [ 2 0 0 ] B z + [ 2 0 1 ] C z + [ 2 0 1 ] D z + [ 2 1 0 ] E z + [ 2 1 0 ] F z + [ 2 1 1 ] G z + [ 2 1 1 ] H z + [ 2 2 0 ] I z + [ 2 2 0 ] J z + [ 2 2 1 ] K z + [ 2 2 1 ] L z + [ 3 0 0 ] M z + [ 3 0 0 ] N z + [ 3 0 1 ] P z + [ 3 0 1 ] Q z + [ 3 1 0 ] R z + [ 3 1 0 ] S z + [ 3 1 1 ] T z + [ 3 1 1 ] U z + [ 3 2 0 ] V z + [ 3 2 0 ] W z + [ 3 2 1 ] X z + [ 3 2 1 ] Z z + */ + + if ((tid = H5Tcopy(H5T_C_S1)) < 0) + goto out; + if (H5Tset_size(tid, (size_t)2) < 0) + goto out; + if (make_attr(loc_id,3,dims3,"string3D",tid,buf13) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_BITFIELD + *------------------------------------------------------------------------- + */ + + n=1; + for(i = 0; i < 4; i++) { + for(j = 0; j < 3; j++) { + for(k = 0; k < 2; k++) { + if(make_diffs) + buf23[i][j][k] = 0; + else + buf23[i][j][k] = (char)(n++); + } + } + } + + /* + position bitfield3D of </g1> bitfield3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] 1 0 1 + [ 0 0 1 ] 2 0 2 + [ 0 1 0 ] 3 0 3 + [ 0 1 1 ] 4 0 4 + [ 0 2 0 ] 5 0 5 + [ 0 2 1 ] 6 0 6 + [ 1 0 0 ] 7 0 7 + [ 1 0 1 ] 8 0 8 + [ 1 1 0 ] 9 0 9 + [ 1 1 1 ] 10 0 10 + [ 1 2 0 ] 11 0 11 + [ 1 2 1 ] 12 0 12 + [ 2 0 0 ] 13 0 13 + [ 2 0 1 ] 14 0 14 + [ 2 1 0 ] 15 0 15 + [ 2 1 1 ] 16 0 16 + [ 2 2 0 ] 17 0 17 + [ 2 2 1 ] 18 0 18 + [ 3 0 0 ] 19 0 19 + [ 3 0 1 ] 20 0 20 + [ 3 1 0 ] 21 0 21 + [ 3 1 1 ] 22 0 22 + [ 3 2 0 ] 23 0 23 + [ 3 2 1 ] 24 0 24 + */ + + if ((tid = H5Tcopy(H5T_STD_B8LE)) < 0) + goto out; + if (make_attr(loc_id,3,dims3,"bitfield3D",tid,buf23) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_OPAQUE + *------------------------------------------------------------------------- + */ + if ((tid = H5Tcreate(H5T_OPAQUE, (size_t)1)) < 0) + goto out; + if (H5Tset_tag(tid, "1-byte opaque type") < 0) + goto out; + if (make_attr(loc_id,3,dims3,"opaque3D",tid,buf23) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_COMPOUND + *------------------------------------------------------------------------- + */ + + n=1; + for(i = 0; i < 4; i++) { + for(j = 0; j < 3; j++) { + for(k = 0; k < 2; k++) { + if(make_diffs) { + buf33[i][j][k].a = 0; + buf33[i][j][k].b = 0; + } + else { + buf33[i][j][k].a = (char)(n++); + buf33[i][j][k].b = n++; + } + } + } + } + /*position compound3D of </g1> compound3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] 1 0 1 + [ 0 0 0 ] 2 0 2 + [ 0 0 1 ] 3 0 3 + [ 0 0 1 ] 4 0 4 + [ 0 1 0 ] 5 0 5 + [ 0 1 0 ] 6 0 6 + [ 0 1 1 ] 7 0 7 + [ 0 1 1 ] 8 0 8 + [ 0 2 0 ] 9 0 9 + [ 0 2 0 ] 10 0 10 + [ 0 2 1 ] 11 0 11 + [ 0 2 1 ] 12 0 12 + [ 1 0 0 ] 13 0 13 + [ 1 0 0 ] 14 0 14 + [ 1 0 1 ] 15 0 15 + [ 1 0 1 ] 16 0 16 + [ 1 1 0 ] 17 0 17 + [ 1 1 0 ] 18 0 18 + [ 1 1 1 ] 19 0 19 + [ 1 1 1 ] 20 0 20 + [ 1 2 0 ] 21 0 21 + [ 1 2 0 ] 22 0 22 + [ 1 2 1 ] 23 0 23 + [ 1 2 1 ] 24 0 24 + [ 2 0 0 ] 25 0 25 + [ 2 0 0 ] 26 0 26 + [ 2 0 1 ] 27 0 27 + [ 2 0 1 ] 28 0 28 + [ 2 1 0 ] 29 0 29 + [ 2 1 0 ] 30 0 30 + [ 2 1 1 ] 31 0 31 + [ 2 1 1 ] 32 0 32 + [ 2 2 0 ] 33 0 33 + [ 2 2 0 ] 34 0 34 + [ 2 2 1 ] 35 0 35 + [ 2 2 1 ] 36 0 36 + [ 3 0 0 ] 37 0 37 + [ 3 0 0 ] 38 0 38 + [ 3 0 1 ] 39 0 39 + [ 3 0 1 ] 40 0 40 + [ 3 1 0 ] 41 0 41 + [ 3 1 0 ] 42 0 42 + [ 3 1 1 ] 43 0 43 + [ 3 1 1 ] 44 0 44 + [ 3 2 0 ] 45 0 45 + [ 3 2 0 ] 46 0 46 + [ 3 2 1 ] 47 0 47 + [ 3 2 1 ] 48 0 48 + */ + + + + if ((tid = H5Tcreate (H5T_COMPOUND, sizeof(s_t))) < 0) + goto out; + if (H5Tinsert(tid, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR) < 0) + goto out; + if (H5Tinsert(tid, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE) < 0) + goto out; + if (make_attr(loc_id,3,dims3,"compound3D",tid,buf33) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_REFERENCE + *------------------------------------------------------------------------- + */ + /* Create references to dataset */ + if (dset_name) + { + for (i = 0; i < 4; i++) + { + for (j = 0; j < 3; j++) + { + for (k = 0; k < 2; k++) + if (H5Rcreate(&buf43[i][j][k],fid,dset_name,H5R_OBJECT,(hid_t)-1) < 0) + goto out; + } + } + if (make_attr(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43) < 0) + goto out; + } + + /*------------------------------------------------------------------------- + * H5T_ENUM + *------------------------------------------------------------------------- + */ + + for (i = 0; i < 4; i++) + { + for (j = 0; j < 3; j++) + { + for (k = 0; k < 2; k++) + { + if (make_diffs) + { + buf453[i][j][k]=RED; + } + else + { + buf453[i][j][k]=GREEN; + } + } + } + } + + /* + position enum3D of </g1> enum3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] GREEN RED + [ 0 0 1 ] GREEN RED + [ 0 1 0 ] GREEN RED + [ 0 1 1 ] GREEN RED + [ 0 2 0 ] GREEN RED + [ 0 2 1 ] GREEN RED + [ 1 0 0 ] GREEN RED + [ 1 0 1 ] GREEN RED + [ 1 1 0 ] GREEN RED + [ 1 1 1 ] GREEN RED + [ 1 2 0 ] GREEN RED + [ 1 2 1 ] GREEN RED + [ 2 0 0 ] GREEN RED + [ 2 0 1 ] GREEN RED + [ 2 1 0 ] GREEN RED + [ 2 1 1 ] GREEN RED + [ 2 2 0 ] GREEN RED + [ 2 2 1 ] GREEN RED + [ 3 0 0 ] GREEN RED + [ 3 0 1 ] GREEN RED + [ 3 1 0 ] GREEN RED + [ 3 1 1 ] GREEN RED + [ 3 2 0 ] GREEN RED + [ 3 2 1 ] GREEN RED + */ + + + if ((tid = H5Tcreate(H5T_ENUM, sizeof(e_t))) < 0) + goto out; + if (H5Tenum_insert(tid, "RED", (val = 0, &val)) < 0) + goto out; + if (H5Tenum_insert(tid, "GREEN", (val = 1, &val)) < 0) + goto out; + if (make_attr(loc_id,3,dims3,"enum3D",tid,buf453) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_VLEN + *------------------------------------------------------------------------- + */ + + /* Allocate and initialize VL dataset to write */ + n=0; + for (i = 0; i < 4; i++) + { + for (j = 0; j < 3; j++) + { + for (k = 0; k < 2; k++) + { + unsigned l; + + buf53[i][j][k].p = HDmalloc((i + 1) * sizeof(int)); + buf53[i][j][k].len = (size_t)i + 1; + for (l = 0; l < i + 1; l++) + if (make_diffs) + ((int *)buf53[i][j][k].p)[l] = 0; + else + ((int *)buf53[i][j][k].p)[l] = n++; + } + } + } + /* + position vlen3D of </g1> vlen3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 1 ] 1 0 1 + [ 0 1 0 ] 2 0 2 + [ 0 1 1 ] 3 0 3 + [ 0 2 0 ] 4 0 4 + [ 0 2 1 ] 5 0 5 + [ 1 0 0 ] 6 0 6 + [ 1 0 0 ] 7 0 7 + [ 1 0 1 ] 8 0 8 + [ 1 0 1 ] 9 0 9 + [ 1 1 0 ] 10 0 10 + etc + */ + if ((sid = H5Screate_simple(3, dims3, NULL)) < 0) + goto out; + if ((tid = H5Tvlen_create(H5T_NATIVE_INT)) < 0) + goto out; + if ((aid = H5Acreate2(loc_id, "vlen3D", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if (H5Awrite(aid, tid, buf53) < 0) + goto out; + if (H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, buf53) < 0) + goto out; + if (H5Aclose(aid) < 0) + goto out; + aid = -1; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + if (H5Sclose(sid) < 0) + goto out; + sid = -1; + + /*------------------------------------------------------------------------- + * H5T_ARRAY + *------------------------------------------------------------------------- + */ + n=1; + for (i = 0; i < 24; i++) + { + for (j = 0; j < (int)dimarray[0]; j++) + { + if (make_diffs) buf63[i][j]=0; + else buf63[i][j]=n++; + } + } + /* + position array3D of </g1> array3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] 1 0 1 + [ 0 0 0 ] 2 0 2 + [ 0 0 0 ] 3 0 3 + [ 0 0 1 ] 4 0 4 + [ 0 0 1 ] 5 0 5 + [ 0 0 1 ] 6 0 6 + [ 0 1 0 ] 7 0 7 + etc + */ + + if ((tid = H5Tarray_create2(H5T_NATIVE_INT, 1, dimarray)) < 0) + goto out; + if (make_attr(loc_id, 3, dims3, "array3D", tid, buf63) < 0) + goto out; + if (H5Tclose(tid) < 0) + goto out; + tid = -1; + + /*------------------------------------------------------------------------- + * H5T_INTEGER and H5T_FLOAT + *------------------------------------------------------------------------- + */ + n = 1; f = 1; + for(i = 0; i < 4; i++) + { + for(j = 0; j < 3; j++) + { + for(k = 0; k < 2; k++) + { + if(make_diffs) + { + buf73[i][j][k] = 0; + buf83[i][j][k] = 0; + } + else + { + buf73[i][j][k] = n++; + buf83[i][j][k] = f++; + } + } + } + } + + /* + position integer3D of </g1> integer3D of </g1> difference + ------------------------------------------------------------ + [ 0 0 0 ] 1 0 1 + [ 0 0 1 ] 2 0 2 + [ 0 1 0 ] 3 0 3 + [ 0 1 1 ] 4 0 4 + [ 0 2 0 ] 5 0 5 + [ 0 2 1 ] 6 0 6 + [ 1 0 0 ] 7 0 7 + [ 1 0 1 ] 8 0 8 + [ 1 1 0 ] 9 0 9 + [ 1 1 1 ] 10 0 10 + etc + */ + if (make_attr(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73) < 0) + goto out; + if (make_attr(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83) < 0) + goto out; + + + return 0; + +out: + H5E_BEGIN_TRY { + H5Aclose(aid); + H5Sclose(sid); + H5Tclose(tid); + } H5E_END_TRY; + return -1; +} + + + + +/*------------------------------------------------------------------------- +* Function: make_dset +* +* Purpose: utility function to create and write a dataset in LOC_ID +* +* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu +* +* Date: November 12, 2003 +* +*------------------------------------------------------------------------- +*/ +static +int make_dset(hid_t loc_id, + const char *name, + hid_t sid, + hid_t dcpl, + void *buf) +{ + hid_t did=-1; + + if ((did = H5Dcreate2(loc_id, name, H5T_NATIVE_INT, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + return -1; + if (H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) + goto out; + if (H5Dclose(did) < 0) + return -1; + return 0; + +out: + H5E_BEGIN_TRY { + H5Dclose(did); + } H5E_END_TRY; + return -1; +} + + +/*------------------------------------------------------------------------- +* Function: write_dset +* +* Purpose: utility function to create and write a dataset in LOC_ID +* +* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu +* +* Date: November 12, 2003 +* +*------------------------------------------------------------------------- +*/ +static +int write_dset( hid_t loc_id, + int rank, + hsize_t *dims, + const char *dset_name, + hid_t tid, + void *buf ) +{ + hid_t did=-1; + hid_t sid=-1; + + if ((sid = H5Screate_simple(rank, dims, NULL)) < 0) + return -1; + if ((did = H5Dcreate2(loc_id, dset_name, tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if (buf) + { + if(H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) + goto out; + } + if (H5Dclose(did) < 0) + goto out; + if (H5Sclose(sid) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY { + H5Dclose(did); + H5Sclose(sid); + } H5E_END_TRY; + return -1; +} + + + +/*------------------------------------------------------------------------- +* Function: make_attr +* +* Purpose: utility function to write an attribute in LOC_ID +* +* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu +* +* Date: November 12, 2003 +* +*------------------------------------------------------------------------- +*/ +static +int make_attr(hid_t loc_id, + int rank, + hsize_t *dims, + const char *attr_name, + hid_t tid, + void *buf) +{ + hid_t aid; + hid_t sid; + + if ((sid = H5Screate_simple(rank, dims, NULL)) < 0) + return -1; + if ((aid = H5Acreate2(loc_id, attr_name, tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if(buf) + { + if(H5Awrite(aid, tid, buf) < 0) + goto out; + } + if (H5Aclose(aid) < 0) + goto out; + if (H5Sclose(sid) < 0) + goto out; + return 0; + +out: + H5E_BEGIN_TRY { + H5Aclose(aid); + H5Sclose(sid); + } H5E_END_TRY; + return -1; +} + + +/*------------------------------------------------------------------------- +* Function: make_named_dtype +* +* Purpose: create a file with named datatypes in various configurations +* +*------------------------------------------------------------------------- +*/ +static +int make_named_dtype(hid_t loc_id) +{ + hsize_t dims[1] ={3}; + hid_t did=-1; + hid_t aid=-1; + hid_t sid=-1; + hid_t tid=-1; + hid_t gid=-1; + + if ((sid = H5Screate_simple(1, dims, NULL)) < 0) + goto out; + + /* Create a dataset with an anonymous committed datatype as the first thing + * h5repack sees */ + if((tid = H5Tcopy(H5T_STD_I16LE)) < 0) + goto out; + if(H5Tcommit_anon(loc_id, tid, H5P_DEFAULT, H5P_DEFAULT) < 0) + goto out; + if ((did = H5Dcreate2(loc_id, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if(H5Tclose(tid) < 0) + goto out; + + /* Create an attribute on that dataset that uses a committed datatype in + * a remote group */ + if((gid = H5Gcreate2(loc_id, "M", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if(H5Gclose(gid) < 0) + goto out; + if((gid = H5Gcreate2(loc_id, "M/M", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if(H5Gclose(gid) < 0) + goto out; + if((tid = H5Tcopy(H5T_STD_I16BE)) < 0) + goto out; + if(H5Tcommit2(loc_id, "/M/M/A", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) + goto out; + if((aid = H5Acreate2(did, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if(H5Aclose(aid) < 0) + goto out; + if(H5Tclose(tid) < 0) + goto out; + if(H5Dclose(did) < 0) + goto out; + + /* Create a dataset in the remote group that uses a committed datatype in + * the root group */ + if((tid = H5Tcopy(H5T_STD_I32LE)) < 0) + goto out; + if(H5Tcommit2(loc_id, "N", tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT) < 0) + goto out; + if((did = H5Dcreate2(loc_id, "M/M/B", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if(H5Tclose(tid) < 0) + goto out; + + /* Create an attribute on the remote dataset that uses an anonymous + * committed datatype */ + if((tid = H5Tcopy(H5T_STD_I32BE)) < 0) + goto out; + if(H5Tcommit_anon(loc_id, tid, H5P_DEFAULT, H5P_DEFAULT) < 0) + goto out; + if((aid = H5Acreate2(did, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if(H5Aclose(aid) < 0) + goto out; + + /* Create another attribute that uses the same anonymous datatype */ + if((aid = H5Acreate2(did, "B", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if(H5Aclose(aid) < 0) + goto out; + if(H5Tclose(tid) < 0) + goto out; + if(H5Dclose(did) < 0) + goto out; + + /* Create a dataset in the root group that uses the committed datatype in + * the root group */ + if((tid = H5Topen2(loc_id, "N", H5P_DEFAULT)) < 0) + goto out; + if((did = H5Dcreate2(loc_id, "O", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if(H5Dclose(did) < 0) + goto out; + + /* Create 2 attributes on the committed datatype that use that datatype */ + if((aid = H5Acreate2(tid, "A", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if(H5Aclose(aid) < 0) + goto out; + if((aid = H5Acreate2(tid, "B", tid, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0) + goto out; + if(H5Aclose(aid) < 0) + goto out; + if(H5Tclose(tid) < 0) + goto out; + + /* Close */ + if (H5Sclose(sid) < 0) + goto out; + + return 0; + +out: + H5E_BEGIN_TRY + { + H5Tclose(tid); + H5Aclose(aid); + H5Sclose(sid); + H5Dclose(did); + H5Gclose(gid); + } H5E_END_TRY; + return -1; +} /* end make_named_dtype() */ + +/*------------------------------------------------------------------------- + * Function: add_attr_with_objref + * + * Purpose: + * Create attributes with object reference to objects (dset, + * group, datatype). + * + * Note: + * this function depends on locally created objects, however can be modified + * to be independent as necessary + * + * Programmer: Jonathan Kim (March 23, 2010) + *------------------------------------------------------------------------*/ +static herr_t add_attr_with_objref(hid_t file_id, hid_t obj_id) +{ + int ret = SUCCEED; + int status; + /* attr obj ref */ + hsize_t dim_attr_objref[1]={3}; + hobj_ref_t data_attr_objref[3]; + + /* -------------------------------- + * add attribute with obj ref type + */ + /* ref to dset */ + status = H5Rcreate(&data_attr_objref[0],file_id,NAME_OBJ_DS1,H5R_OBJECT,(hid_t)-1); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* ref to group */ + status = H5Rcreate(&data_attr_objref[1],file_id,NAME_OBJ_GRP,H5R_OBJECT,(hid_t)-1); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* ref to datatype */ + status = H5Rcreate(&data_attr_objref[2],file_id,NAME_OBJ_NDTYPE,H5R_OBJECT,(hid_t)-1); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* create attr with obj ref type */ + status = make_attr(obj_id,1,dim_attr_objref,"Attr_OBJREF",H5T_STD_REF_OBJ,data_attr_objref); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> make_attr failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + +out: + + return ret; + +} + +/*------------------------------------------------------------------------- + * Function: add_attr_with_regref + * + * Purpose: + * Create attributes with region reference to dset + * + * Note: + * this function depends on locally created objects, however can be modified + * to be independent as necessary + * + * Programmer: Jonathan Kim (March 23, 2010) + *------------------------------------------------------------------------*/ +static herr_t add_attr_with_regref(hid_t file_id, hid_t obj_id) +{ + int ret = SUCCEED; + int status; + + /* attr region ref */ + hid_t sid_regrefed_dset=0; + hsize_t dim_regrefed_dset[2]={3,6}; + hsize_t coords_regrefed_dset[3][2] = {{0,1},{1,2},{2,3}}; + hsize_t dim_attr_regref[1]= {1}; /* dim of */ + hdset_reg_ref_t data_attr_regref[1]; + + + /* ----------------------------------- + * add attribute with region ref type + */ + sid_regrefed_dset = H5Screate_simple (2, dim_regrefed_dset, NULL); + if (sid_regrefed_dset < 0) + { + fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* select elements space for reference */ + status = H5Sselect_elements (sid_regrefed_dset, H5S_SELECT_SET, (size_t)3, coords_regrefed_dset[0]); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* create region reference from elements space */ + status = H5Rcreate (&data_attr_regref[0], file_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_regrefed_dset); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* create attr with region ref type */ + status = make_attr(obj_id,1,dim_attr_regref,"Attr_REGREF",H5T_STD_REF_DSETREG,data_attr_regref); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> make_attr failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + +out: + if (sid_regrefed_dset > 0) + H5Sclose (sid_regrefed_dset); + + return ret; + +} + +/*------------------------------------------------------------------------- + * Function: gen_refered_objs + * + * Purpose: + * Create objects (dataset, group, datatype) to be referenced + * + * Note: + * This function is to use along with gen_obj_ref() gen_region_ref() + * + * Programmer: Jonathan Kim (March 23, 2010) + *------------------------------------------------------------------------*/ +static herr_t gen_refered_objs(hid_t loc_id) +{ + int status; + herr_t ret = SUCCEED; + + /* objects (dset, group, datatype) */ + hid_t sid=0, did1=0, gid=0, tid=0; + hsize_t dims1[1]={3}; + int data[3] = {10,20,30}; + + /* Dset2 */ + hid_t sid2=0, did2=0; + hsize_t dims2[2] = {3,16}; + char data2[3][16] = {"The quick brown", "fox jumps over ", "the 5 lazy dogs"}; + + /*----------------------- + * add short dataset + * (define NAME_OBJ_DS1) + */ + sid = H5Screate_simple(1, dims1, NULL); + if (sid < 0) + { + fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + did1 = H5Dcreate2 (loc_id, NAME_OBJ_DS1, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (did1 < 0) + { + fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + status = H5Dwrite(did1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /*-------------- + * add group + * (define NAME_OBJ_GRP) + */ + gid = H5Gcreate2 (loc_id, NAME_OBJ_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (gid < 0) + { + fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /*---------------------- + * add named datatype + * (define NAME_OBJ_NDTYPE) + */ + tid = H5Tcopy(H5T_NATIVE_INT); + status = H5Tcommit2(loc_id, NAME_OBJ_NDTYPE, tid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + + /*-------------------------- + * create long dataset + * (define NAME_OBJ_DS2) + */ + sid2 = H5Screate_simple (2, dims2, NULL); + if (sid2 < 0) + { + fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* create normal dataset which is refered */ + did2 = H5Dcreate2 (loc_id, NAME_OBJ_DS2, H5T_STD_I8LE, sid2, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); + if (did2 < 0) + { + fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* write values to dataset */ + status = H5Dwrite (did2, H5T_NATIVE_CHAR, H5S_ALL, H5S_ALL, H5P_DEFAULT, data2); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + +out: + if(did1 > 0) + H5Dclose(did1); + if(gid > 0) + H5Gclose(gid); + if(tid > 0) + H5Tclose(tid); + if(sid > 0) + H5Sclose(sid); + + if(did2 > 0) + H5Dclose(did2); + if(sid2 > 0) + H5Sclose(sid2); + return ret; + +} + +/*------------------------------------------------------------------------- + * Function: gen_obj_ref + * + * Purpose: + * Generate object references to objects (dataset,group and named datatype) + * + * Note: + * copied from h5copygentest.c and upate to create named datatype + * + * Programmer: Jonathan Kim (March 18, 2010) + *------------------------------------------------------------------------*/ +static herr_t gen_obj_ref(hid_t loc_id) +{ + int status; + herr_t ret = SUCCEED; + + hid_t sid=0, oid=0; + hsize_t dims_dset_objref[1]={3}; + + /* attr with int type */ + hsize_t dim_attr_int[1]={2}; + int data_attr_int[2] = {10,20}; + + /* write buffer for obj reference */ + hobj_ref_t objref_buf[3]; + + /*--------------------------------------------------------- + * create obj references to the previously created objects. + * Passing -1 as reference is an object.*/ + + /* obj ref to dataset */ + status = H5Rcreate (&objref_buf[0], loc_id, NAME_OBJ_DS1, H5R_OBJECT, (hid_t)-1); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* obj ref to group */ + status = H5Rcreate (&objref_buf[1], loc_id, NAME_OBJ_GRP, H5R_OBJECT, (hid_t)-1); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* obj ref to named-datatype */ + status = H5Rcreate (&objref_buf[2], loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT, (hid_t)-1); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /*--------------------------------------------------------- + * create dataset contain references + */ + sid = H5Screate_simple (1, dims_dset_objref, NULL); + if (sid < 0) + { + fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + oid = H5Dcreate2 (loc_id, "Dset_OBJREF", H5T_STD_REF_OBJ, sid, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); + if (oid < 0) + { + fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + status = H5Dwrite(oid, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, objref_buf); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* add attribute with int type */ + if (make_attr(oid,1,dim_attr_int,"integer",H5T_NATIVE_INT,data_attr_int) < 0) + goto out; + + /* add attribute with obj ref */ + status = add_attr_with_objref(loc_id, oid); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> add_attr_with_objref failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* add attribute with region ref */ + status = add_attr_with_regref(loc_id, oid); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> add_attr_with_regref failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + +out: + if(oid > 0) + H5Dclose(oid); + if(sid > 0) + H5Sclose(sid); + + return ret; +} + + +/*------------------------------------------------------------------------- + * Function: gen_region_ref + * + * Purpose: Generate dataset region references + * + * Note: + * copied from h5copygentest.c + * + * Programmer: Jonathan Kim (March 18, 2010) + *------------------------------------------------------------------------*/ +static herr_t gen_region_ref(hid_t loc_id) +{ + int status; + herr_t ret = SUCCEED; + + /* target dataset */ + hid_t sid_trg=0; + hsize_t dims_trg[2] = {3,16}; + + /* dset with region ref type */ + hid_t sid_ref=0, oid_ref=0; + + /* region ref to target dataset */ + hsize_t coords[4][2] = { {0,1}, {2,11}, {1,0}, {2,4} }; + hdset_reg_ref_t rr_data[2]; + hsize_t start[2] = {0,0}; + hsize_t stride[2] = {2,11}; + hsize_t count[2] = {2,2}; + hsize_t block[2] = {1,3}; + hsize_t dims1[1] = {2}; + + /* attr with int type */ + hsize_t dim_attr_int[1]={2}; + int data_attr_int[2] = {10,20}; + + sid_trg = H5Screate_simple (2, dims_trg, NULL); + if (sid_trg < 0) + { + fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* select elements space for reference */ + status = H5Sselect_elements (sid_trg, H5S_SELECT_SET, (size_t)4, coords[0]); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* create region reference from elements space */ + status = H5Rcreate (&rr_data[0], loc_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_trg); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* select hyperslab space for reference */ + status = H5Sselect_hyperslab (sid_trg, H5S_SELECT_SET, start, stride, count, block); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Sselect_hyperslab failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* create region reference from hyperslab space */ + status = H5Rcreate (&rr_data[1], loc_id, NAME_OBJ_DS2, H5R_DATASET_REGION, sid_trg); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* Create dataspace. */ + sid_ref = H5Screate_simple (1, dims1, NULL); + if (sid_ref < 0) + { + fprintf(stderr, "Error: %s %d> H5Screate_simple failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* create region reference dataset */ + oid_ref = H5Dcreate2 (loc_id, REG_REF_DS1, H5T_STD_REF_DSETREG, sid_ref, H5P_DEFAULT,H5P_DEFAULT,H5P_DEFAULT); + if (oid_ref < 0) + { + fprintf(stderr, "Error: %s %d> H5Dcreate2 failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* write data as region references */ + status = H5Dwrite (oid_ref, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rr_data); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* add attribute with int type */ + if (make_attr(oid_ref,1,dim_attr_int,"integer",H5T_NATIVE_INT,data_attr_int) < 0) + goto out; + + /* add attribute with obj ref */ + status = add_attr_with_objref(loc_id, oid_ref); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> add_attr_with_objref failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* add attribute with region ref */ + status = add_attr_with_regref(loc_id, oid_ref); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> add_attr_with_regref failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + +out: + if (oid_ref > 0) + H5Dclose (oid_ref); + if (sid_ref > 0) + H5Sclose (sid_ref); + if (sid_trg > 0) + H5Sclose (sid_trg); + + return ret; +} + +/*------------------------------------------------------------------------- +* Function: make_references +* +* Purpose: create a file with obj and region references +* +* Programmer: Jonathan Kim (March 18, 2010) +*------------------------------------------------------------------------- +*/ +static herr_t make_references(hid_t loc_id) +{ + herr_t ret = SUCCEED; + herr_t status; + + /* add target objects */ + status = gen_refered_objs(loc_id); + if (status == FAIL) + { + fprintf(stderr, "Failed to generate referenced object.\n"); + ret = FAIL; + } + + /* add object reference */ + status = gen_obj_ref(loc_id); + if (status == FAIL) + { + fprintf(stderr, "Failed to generate object reference.\n"); + ret = FAIL; + } + + /* add region reference */ + status = gen_region_ref(loc_id); + if (status == FAIL) + { + fprintf(stderr, "Failed to generate region reference.\n"); + ret = FAIL; + } + + return ret; +} + +/*------------------------------------------------------------------------- +* Function: make_complex_attr_references +* +* Purpose: +* create a file with : +* 1. obj ref in attribute of compound type +* 2. region ref in attribute of compound type +* 3. obj ref in attribute of vlen type +* 4. region ref in attribute of vlen type +* +* Programmer: Jonathan (March 25, 2010) +*------------------------------------------------------------------------- +*/ +/* obj dset */ +#define RANK_OBJ 2 +#define DIM0_OBJ 6 +#define DIM1_OBJ 10 +/* container dset */ +#define RANK_DSET 1 +#define DIM_DSET 4 +/* 1. obj references in compound attr */ +#define RANK_COMP_OBJREF 1 +#define DIM_COMP_OBJREF 3 /* for dataset, group, datatype */ +/* 2. region references in compound attr */ +#define RANK_COMP_REGREF 1 +#define DIM_COMP_REGREF 1 /* for element region */ +/* 3. obj references in vlen attr */ +#define RANK_VLEN_OBJREF 1 +#define DIM_VLEN_OBJREF 3 /* for dataset, group, datatype */ +#define LEN0_VLEN_OBJREF 1 /* dataset */ +#define LEN1_VLEN_OBJREF 1 /* group */ +#define LEN2_VLEN_OBJREF 1 /* datatype */ +/* 4. region references in vlen attr */ +#define RANK_VLEN_REGREF 1 +#define DIM_VLEN_REGREF 1 /* for element region */ +#define LEN0_VLEN_REGREF 1 /* element region */ + +static herr_t make_complex_attr_references(hid_t loc_id) +{ + herr_t ret = SUCCEED; + herr_t status; + /* + * for objects + */ + hid_t objgid=0, objdid=0, objtid=0, objsid=0; + hsize_t obj_dims[RANK_OBJ] = {DIM0_OBJ, DIM1_OBJ}; + int obj_data[DIM0_OBJ][DIM1_OBJ]= + {{ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9}, + {10,11,12,13,14,15,16,17,18,19}, + {20,21,22,23,24,25,26,27,28,29}, + {30,31,32,33,34,35,36,37,38,39}, + {40,41,42,43,44,45,46,47,48,49}, + {50,51,52,53,54,55,56,57,58,59}}; + + /* + * group main + */ + hid_t main_gid=0; + /* + * dataset which the attribute will be attached to + */ + hsize_t main_dset_dims[RANK_DSET] = {DIM_DSET}; + hid_t main_sid=0, main_did=0; + /* + * 1. obj references in compound attr + */ + hid_t comp_objref_tid=0, comp_objref_aid=0; + typedef struct comp_objref_t { + hobj_ref_t val_objref; + int val_int; + } comp_objref_t; + comp_objref_t comp_objref_data[DIM_COMP_OBJREF]; + hid_t comp_objref_attr_sid=0; + hsize_t comp_objref_dim[RANK_COMP_OBJREF] = {DIM_COMP_OBJREF}; + + /* + * 2. region references in compound attr + */ + hid_t comp_regref_tid=0, comp_regref_aid=0; + typedef struct comp_regref_t { + hdset_reg_ref_t val_regref; + int val_int; + } comp_regref_t; + comp_regref_t comp_regref_data[DIM_COMP_REGREF]; + hid_t comp_regref_attr_sid=0; + hsize_t comp_regref_dim[RANK_COMP_REGREF] = {DIM_COMP_REGREF}; + hsize_t coords[4][2] = { {0,1}, {2,3}, {3,4}, {4,5} }; + + /* + * 3. obj references in vlen attr + */ + hid_t vlen_objref_attr_tid=0, vlen_objref_attr_sid=0; + hid_t vlen_objref_attr_id=0; + hvl_t vlen_objref_data[DIM_VLEN_OBJREF]; + hsize_t vlen_objref_dims[RANK_VLEN_OBJREF] = {DIM_VLEN_OBJREF}; + + /* + * 4. region references in vlen attr + */ + hid_t vlen_regref_attr_tid=0, vlen_regref_attr_sid=0; + hid_t vlen_regref_attr_id=0; + hvl_t vlen_regref_data[DIM_VLEN_REGREF]; + hsize_t vlen_regref_dim[RANK_VLEN_REGREF] = {DIM_VLEN_REGREF}; + + + /* --------------------------------------- + * create objects which to be referenced + */ + /* object1 group */ + objgid = H5Gcreate2(loc_id, NAME_OBJ_GRP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + /* object2 dataset */ + objsid = H5Screate_simple(RANK_OBJ, obj_dims, NULL); + objdid = H5Dcreate2(loc_id, NAME_OBJ_DS1, H5T_NATIVE_INT, objsid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + status = H5Dwrite(objdid, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obj_data[0]); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* object3 named datatype */ + objtid = H5Tcopy(H5T_NATIVE_INT); + status = H5Tcommit2(loc_id, NAME_OBJ_NDTYPE, objtid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Tcommit2 failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + + /* --------------------------------------------- + * Put testing objs in this group + * create group contain dataset with attribute and the attribute has + * compound type which contain obj and region reference */ + main_gid = H5Gcreate2(loc_id, "group_main", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (main_gid < 0) + { + fprintf(stderr, "Error: %s %d> H5Gcreate2 failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /*---------------------------------------------------------- + * create dataset which the attribute will be attached to + */ + main_sid = H5Screate_simple(RANK_DSET, main_dset_dims, NULL); + + main_did = H5Dcreate2(main_gid, "dset_main", H5T_NATIVE_INT, main_sid, H5P_DEFAULT,H5P_DEFAULT, H5P_DEFAULT); + + status = H5Dwrite(main_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, obj_data[0]); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Dwrite failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /*------------------------------------------------------------------- + * 1. create obj references in a attribute of compound type + */ + + /* + * create compound type for attribute + */ + comp_objref_tid = H5Tcreate (H5T_COMPOUND, sizeof(comp_objref_t)); + + H5Tinsert(comp_objref_tid, "value_objref", HOFFSET(comp_objref_t, val_objref), H5T_STD_REF_OBJ); + H5Tinsert(comp_objref_tid, "value_int", HOFFSET(comp_objref_t, val_int), H5T_NATIVE_INT); + + /* + * Create the object references into compound type + */ + /* references to dataset */ + status = H5Rcreate (&(comp_objref_data[0].val_objref), loc_id, NAME_OBJ_DS1, H5R_OBJECT,(hid_t)-1); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + comp_objref_data[0].val_int = 0; + + /* references to group */ + status = H5Rcreate (&(comp_objref_data[1].val_objref), loc_id, NAME_OBJ_GRP, H5R_OBJECT,(hid_t)-1); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + comp_objref_data[1].val_int = 10; + + /* references to datatype */ + status = H5Rcreate (&(comp_objref_data[2].val_objref), loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT,(hid_t)-1); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + comp_objref_data[2].val_int = 20; + + /* + * create attribute and write the object ref + */ + comp_objref_attr_sid = H5Screate_simple (RANK_COMP_OBJREF, comp_objref_dim, NULL); + comp_objref_aid = H5Acreate2 (main_did, "Comp_OBJREF", comp_objref_tid, comp_objref_attr_sid, H5P_DEFAULT, H5P_DEFAULT); + status = H5Awrite (comp_objref_aid, comp_objref_tid, comp_objref_data); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /*------------------------------------------------------------------- + * 2. create region references in attribute of compound type + */ + /* + * create compound type for attribute + */ + comp_regref_tid = H5Tcreate (H5T_COMPOUND, sizeof(comp_regref_t)); + + H5Tinsert(comp_regref_tid, "value_regref", HOFFSET(comp_regref_t, val_regref), H5T_STD_REF_DSETREG); + H5Tinsert(comp_regref_tid, "value_int", HOFFSET(comp_regref_t, val_int), H5T_NATIVE_INT); + + /* + * create the region reference + */ + status = H5Sselect_elements (objsid, H5S_SELECT_SET, (size_t)4, coords[0]); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + status = H5Rcreate (&(comp_regref_data[0].val_regref), loc_id, NAME_OBJ_DS1, H5R_DATASET_REGION, objsid); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + comp_regref_data[0].val_int = 10; + + /* + * create attribute and write the region ref + */ + comp_regref_attr_sid = H5Screate_simple (RANK_COMP_REGREF, comp_regref_dim, NULL); + comp_regref_aid = H5Acreate2 (main_did, "Comp_REGREF", comp_regref_tid, comp_regref_attr_sid, H5P_DEFAULT, H5P_DEFAULT); + status = H5Awrite (comp_regref_aid, comp_regref_tid, comp_regref_data); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + + /*------------------------------------------------------------------- + * 3. create obj references in attribute of vlen type + */ + /* + * prepare vlen data + */ + vlen_objref_data[0].len = LEN0_VLEN_OBJREF; + vlen_objref_data[0].p = HDmalloc (vlen_objref_data[0].len * sizeof(hobj_ref_t)); + vlen_objref_data[1].len = LEN1_VLEN_OBJREF; + vlen_objref_data[1].p = HDmalloc (vlen_objref_data[1].len * sizeof(hobj_ref_t)); + vlen_objref_data[2].len = LEN2_VLEN_OBJREF; + vlen_objref_data[2].p = HDmalloc (vlen_objref_data[2].len * sizeof(hobj_ref_t)); + + /* + * create obj references + */ + /* reference to dataset */ + status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[0].p)[0], loc_id, NAME_OBJ_DS1, H5R_OBJECT, (hid_t)-1); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + /* reference to group */ + status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[1].p)[0], loc_id, NAME_OBJ_GRP, H5R_OBJECT, (hid_t)-1); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + /* reference to datatype */ + status = H5Rcreate (&((hobj_ref_t*)vlen_objref_data[2].p)[0], loc_id, NAME_OBJ_NDTYPE, H5R_OBJECT, (hid_t)-1); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* + * create vlen type with obj reference + */ + vlen_objref_attr_tid = H5Tvlen_create (H5T_STD_REF_OBJ); + vlen_objref_attr_sid = H5Screate_simple (RANK_VLEN_OBJREF, vlen_objref_dims, NULL); + + /* + * create attribute and write the object reference + */ + vlen_objref_attr_id = H5Acreate2(main_did, "Vlen_OBJREF", vlen_objref_attr_tid, vlen_objref_attr_sid, H5P_DEFAULT, H5P_DEFAULT); + status = H5Awrite (vlen_objref_attr_id, vlen_objref_attr_tid, vlen_objref_data); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* close resource for vlen data */ + status = H5Dvlen_reclaim (vlen_objref_attr_tid, vlen_objref_attr_sid, H5P_DEFAULT, vlen_objref_data); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Dvlen_reclaim failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /*------------------------------------------------------------------- + * 4. create region references in a attribute of vlen type + */ + + /* + * prepare vlen data + */ + vlen_regref_data[0].len = LEN0_VLEN_REGREF; + vlen_regref_data[0].p = HDmalloc (vlen_regref_data[0].len * sizeof(hdset_reg_ref_t)); + + /* + * create region reference + */ + status = H5Sselect_elements(objsid, H5S_SELECT_SET, (size_t)4, coords[0]); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Sselect_elements failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + status = H5Rcreate (&((hdset_reg_ref_t*)vlen_regref_data[0].p)[0], loc_id, NAME_OBJ_DS1, H5R_DATASET_REGION, objsid); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Rcreate failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* + * create vlen type with region reference + */ + vlen_regref_attr_tid = H5Tvlen_create(H5T_STD_REF_DSETREG); + vlen_regref_attr_sid = H5Screate_simple(RANK_VLEN_REGREF, vlen_regref_dim, NULL); + + /* + * create attribute and write the region reference + */ + vlen_regref_attr_id = H5Acreate2(main_did, "Vlen_REGREF", vlen_regref_attr_tid, vlen_regref_attr_sid, H5P_DEFAULT, H5P_DEFAULT); + status = H5Awrite(vlen_regref_attr_id, vlen_regref_attr_tid, vlen_regref_data); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Awrite failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + + /* close resource for vlen data */ + status = H5Dvlen_reclaim (vlen_regref_attr_tid, vlen_regref_attr_sid, H5P_DEFAULT, vlen_regref_data); + if (status < 0) + { + fprintf(stderr, "Error: %s %d> H5Dvlen_reclaim failed.\n", FUNC, __LINE__); + ret = FAIL; + goto out; + } + +out: + /* release resources */ + if (objgid > 0) + H5Gclose(objgid); + if (objsid > 0) + H5Sclose(objsid); + if (objdid > 0) + H5Dclose(objdid); + if (objtid > 0) + H5Tclose(objtid); + + if (main_gid > 0) + H5Gclose(main_gid); + if (main_sid > 0) + H5Sclose(main_sid); + if (main_did > 0) + H5Dclose(main_did); + /* comp obj ref */ + if (comp_objref_tid > 0) + H5Tclose(comp_objref_tid); + if (comp_objref_aid > 0) + H5Aclose(comp_objref_aid); + if (comp_objref_attr_sid > 0) + H5Sclose(comp_objref_attr_sid); + /* comp region ref */ + if (comp_regref_tid > 0) + H5Tclose(comp_regref_tid); + if (comp_regref_aid > 0) + H5Aclose(comp_regref_aid); + if (comp_regref_attr_sid > 0) + H5Sclose(comp_regref_attr_sid); + /* vlen obj ref */ + if (vlen_objref_attr_id > 0) + H5Aclose(vlen_objref_attr_id); + if (vlen_objref_attr_sid > 0) + H5Sclose(vlen_objref_attr_sid); + if (vlen_objref_attr_tid > 0) + H5Tclose(vlen_objref_attr_tid); + /* vlen region ref */ + if (vlen_regref_attr_id > 0) + H5Aclose(vlen_regref_attr_id); + if (vlen_regref_attr_sid > 0) + H5Sclose(vlen_regref_attr_sid); + if (vlen_regref_attr_tid > 0) + H5Tclose(vlen_regref_attr_tid); + + return ret; +} diff --git a/tools/test/h5repack/testfiles/1_vds.h5-vds_dset_chunk20x10x5-v.ddl b/tools/test/h5repack/testfiles/1_vds.h5-vds_dset_chunk20x10x5-v.ddl new file mode 100644 index 0000000..fab9494 --- /dev/null +++ b/tools/test/h5repack/testfiles/1_vds.h5-vds_dset_chunk20x10x5-v.ddl @@ -0,0 +1,112 @@ +HDF5 "out-vds_dset_chunk20x10x5.1_vds.h5" { +DATASET "vds_dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 5, 18, 8 ) / ( H5S_UNLIMITED, 18, 8 ) } + STORAGE_LAYOUT { + CHUNKED ( 20, 10, 5 ) + SIZE 16000 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE -9 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + DATA { + (0,0,0): 10, 10, 10, 10, 10, 10, 10, 10, + (0,1,0): 10, 10, 10, 10, 10, 10, 10, 10, + (0,2,0): 20, 20, 20, 20, 20, 20, 20, 20, + (0,3,0): 20, 20, 20, 20, 20, 20, 20, 20, + (0,4,0): 20, 20, 20, 20, 20, 20, 20, 20, + (0,5,0): 20, 20, 20, 20, 20, 20, 20, 20, + (0,6,0): 30, 30, 30, 30, 30, 30, 30, 30, + (0,7,0): 30, 30, 30, 30, 30, 30, 30, 30, + (0,8,0): 40, 40, 40, 40, 40, 40, 40, 40, + (0,9,0): 40, 40, 40, 40, 40, 40, 40, 40, + (0,10,0): 40, 40, 40, 40, 40, 40, 40, 40, + (0,11,0): 40, 40, 40, 40, 40, 40, 40, 40, + (0,12,0): 50, 50, 50, 50, 50, 50, 50, 50, + (0,13,0): 50, 50, 50, 50, 50, 50, 50, 50, + (0,14,0): 60, 60, 60, 60, 60, 60, 60, 60, + (0,15,0): 60, 60, 60, 60, 60, 60, 60, 60, + (0,16,0): 60, 60, 60, 60, 60, 60, 60, 60, + (0,17,0): 60, 60, 60, 60, 60, 60, 60, 60, + (1,0,0): 11, 11, 11, 11, 11, 11, 11, 11, + (1,1,0): 11, 11, 11, 11, 11, 11, 11, 11, + (1,2,0): 21, 21, 21, 21, 21, 21, 21, 21, + (1,3,0): 21, 21, 21, 21, 21, 21, 21, 21, + (1,4,0): 21, 21, 21, 21, 21, 21, 21, 21, + (1,5,0): 21, 21, 21, 21, 21, 21, 21, 21, + (1,6,0): 31, 31, 31, 31, 31, 31, 31, 31, + (1,7,0): 31, 31, 31, 31, 31, 31, 31, 31, + (1,8,0): 41, 41, 41, 41, 41, 41, 41, 41, + (1,9,0): 41, 41, 41, 41, 41, 41, 41, 41, + (1,10,0): 41, 41, 41, 41, 41, 41, 41, 41, + (1,11,0): 41, 41, 41, 41, 41, 41, 41, 41, + (1,12,0): 51, 51, 51, 51, 51, 51, 51, 51, + (1,13,0): 51, 51, 51, 51, 51, 51, 51, 51, + (1,14,0): 61, 61, 61, 61, 61, 61, 61, 61, + (1,15,0): 61, 61, 61, 61, 61, 61, 61, 61, + (1,16,0): 61, 61, 61, 61, 61, 61, 61, 61, + (1,17,0): 61, 61, 61, 61, 61, 61, 61, 61, + (2,0,0): 12, 12, 12, 12, 12, 12, 12, 12, + (2,1,0): 12, 12, 12, 12, 12, 12, 12, 12, + (2,2,0): 22, 22, 22, 22, 22, 22, 22, 22, + (2,3,0): 22, 22, 22, 22, 22, 22, 22, 22, + (2,4,0): 22, 22, 22, 22, 22, 22, 22, 22, + (2,5,0): 22, 22, 22, 22, 22, 22, 22, 22, + (2,6,0): 32, 32, 32, 32, 32, 32, 32, 32, + (2,7,0): 32, 32, 32, 32, 32, 32, 32, 32, + (2,8,0): 42, 42, 42, 42, 42, 42, 42, 42, + (2,9,0): 42, 42, 42, 42, 42, 42, 42, 42, + (2,10,0): 42, 42, 42, 42, 42, 42, 42, 42, + (2,11,0): 42, 42, 42, 42, 42, 42, 42, 42, + (2,12,0): 52, 52, 52, 52, 52, 52, 52, 52, + (2,13,0): 52, 52, 52, 52, 52, 52, 52, 52, + (2,14,0): 62, 62, 62, 62, 62, 62, 62, 62, + (2,15,0): 62, 62, 62, 62, 62, 62, 62, 62, + (2,16,0): 62, 62, 62, 62, 62, 62, 62, 62, + (2,17,0): 62, 62, 62, 62, 62, 62, 62, 62, + (3,0,0): 13, 13, 13, 13, 13, 13, 13, 13, + (3,1,0): 13, 13, 13, 13, 13, 13, 13, 13, + (3,2,0): 23, 23, 23, 23, 23, 23, 23, 23, + (3,3,0): 23, 23, 23, 23, 23, 23, 23, 23, + (3,4,0): 23, 23, 23, 23, 23, 23, 23, 23, + (3,5,0): 23, 23, 23, 23, 23, 23, 23, 23, + (3,6,0): 33, 33, 33, 33, 33, 33, 33, 33, + (3,7,0): 33, 33, 33, 33, 33, 33, 33, 33, + (3,8,0): 43, 43, 43, 43, 43, 43, 43, 43, + (3,9,0): 43, 43, 43, 43, 43, 43, 43, 43, + (3,10,0): 43, 43, 43, 43, 43, 43, 43, 43, + (3,11,0): 43, 43, 43, 43, 43, 43, 43, 43, + (3,12,0): 53, 53, 53, 53, 53, 53, 53, 53, + (3,13,0): 53, 53, 53, 53, 53, 53, 53, 53, + (3,14,0): 63, 63, 63, 63, 63, 63, 63, 63, + (3,15,0): 63, 63, 63, 63, 63, 63, 63, 63, + (3,16,0): 63, 63, 63, 63, 63, 63, 63, 63, + (3,17,0): 63, 63, 63, 63, 63, 63, 63, 63, + (4,0,0): 14, 14, 14, 14, 14, 14, 14, 14, + (4,1,0): 14, 14, 14, 14, 14, 14, 14, 14, + (4,2,0): 24, 24, 24, 24, 24, 24, 24, 24, + (4,3,0): 24, 24, 24, 24, 24, 24, 24, 24, + (4,4,0): 24, 24, 24, 24, 24, 24, 24, 24, + (4,5,0): 24, 24, 24, 24, 24, 24, 24, 24, + (4,6,0): 34, 34, 34, 34, 34, 34, 34, 34, + (4,7,0): 34, 34, 34, 34, 34, 34, 34, 34, + (4,8,0): 44, 44, 44, 44, 44, 44, 44, 44, + (4,9,0): 44, 44, 44, 44, 44, 44, 44, 44, + (4,10,0): 44, 44, 44, 44, 44, 44, 44, 44, + (4,11,0): 44, 44, 44, 44, 44, 44, 44, 44, + (4,12,0): 54, 54, 54, 54, 54, 54, 54, 54, + (4,13,0): 54, 54, 54, 54, 54, 54, 54, 54, + (4,14,0): 64, 64, 64, 64, 64, 64, 64, 64, + (4,15,0): 64, 64, 64, 64, 64, 64, 64, 64, + (4,16,0): 64, 64, 64, 64, 64, 64, 64, 64, + (4,17,0): 64, 64, 64, 64, 64, 64, 64, 64 + } +} +} diff --git a/tools/test/h5repack/testfiles/2_vds.h5-vds_chunk3x6x9-v.ddl b/tools/test/h5repack/testfiles/2_vds.h5-vds_chunk3x6x9-v.ddl new file mode 100644 index 0000000..51df9dd --- /dev/null +++ b/tools/test/h5repack/testfiles/2_vds.h5-vds_chunk3x6x9-v.ddl @@ -0,0 +1,70 @@ +HDF5 "out-vds_chunk3x6x9.2_vds.h5" { +DATASET "vds_dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 6, 8, 14 ) / ( H5S_UNLIMITED, 8, 14 ) } + STORAGE_LAYOUT { + CHUNKED ( 3, 6, 9 ) + SIZE 5184 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE -9 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + DATA { + (0,0,0): 10, 10, 10, 10, 10, 10, 10, 40, 40, 40, 40, 40, 40, 40, + (0,1,0): 10, 10, 10, 10, 10, 10, 10, 40, 40, 40, 40, 40, 40, 40, + (0,2,0): 20, 20, 20, 20, 20, 20, 20, 40, 40, 40, 40, 40, 40, 40, + (0,3,0): 20, 20, 20, 20, 20, 20, 20, 40, 40, 40, 40, 40, 40, 40, + (0,4,0): 20, 20, 20, 20, 20, 20, 20, 40, 40, 40, 40, 40, 40, 40, + (0,5,0): 20, 20, 20, 20, 20, 20, 20, 50, 50, 50, 50, 50, 50, 50, + (0,6,0): 30, 30, 30, 30, 30, 30, 30, 50, 50, 50, 50, 50, 50, 50, + (0,7,0): 30, 30, 30, 30, 30, 30, 30, 50, 50, 50, 50, 50, 50, 50, + (1,0,0): 11, 11, 11, 11, 11, 11, 11, 41, 41, 41, 41, 41, 41, 41, + (1,1,0): 11, 11, 11, 11, 11, 11, 11, 41, 41, 41, 41, 41, 41, 41, + (1,2,0): 21, 21, 21, 21, 21, 21, 21, 41, 41, 41, 41, 41, 41, 41, + (1,3,0): 21, 21, 21, 21, 21, 21, 21, 41, 41, 41, 41, 41, 41, 41, + (1,4,0): 21, 21, 21, 21, 21, 21, 21, 41, 41, 41, 41, 41, 41, 41, + (1,5,0): 21, 21, 21, 21, 21, 21, 21, 51, 51, 51, 51, 51, 51, 51, + (1,6,0): 31, 31, 31, 31, 31, 31, 31, 51, 51, 51, 51, 51, 51, 51, + (1,7,0): 31, 31, 31, 31, 31, 31, 31, 51, 51, 51, 51, 51, 51, 51, + (2,0,0): 12, 12, 12, 12, 12, 12, 12, 42, 42, 42, 42, 42, 42, 42, + (2,1,0): 12, 12, 12, 12, 12, 12, 12, 42, 42, 42, 42, 42, 42, 42, + (2,2,0): 22, 22, 22, 22, 22, 22, 22, 42, 42, 42, 42, 42, 42, 42, + (2,3,0): 22, 22, 22, 22, 22, 22, 22, 42, 42, 42, 42, 42, 42, 42, + (2,4,0): 22, 22, 22, 22, 22, 22, 22, 42, 42, 42, 42, 42, 42, 42, + (2,5,0): 22, 22, 22, 22, 22, 22, 22, 52, 52, 52, 52, 52, 52, 52, + (2,6,0): 32, 32, 32, 32, 32, 32, 32, 52, 52, 52, 52, 52, 52, 52, + (2,7,0): 32, 32, 32, 32, 32, 32, 32, 52, 52, 52, 52, 52, 52, 52, + (3,0,0): 13, 13, 13, 13, 13, 13, 13, 43, 43, 43, 43, 43, 43, 43, + (3,1,0): 13, 13, 13, 13, 13, 13, 13, 43, 43, 43, 43, 43, 43, 43, + (3,2,0): 23, 23, 23, 23, 23, 23, 23, 43, 43, 43, 43, 43, 43, 43, + (3,3,0): 23, 23, 23, 23, 23, 23, 23, 43, 43, 43, 43, 43, 43, 43, + (3,4,0): 23, 23, 23, 23, 23, 23, 23, 43, 43, 43, 43, 43, 43, 43, + (3,5,0): 23, 23, 23, 23, 23, 23, 23, 53, 53, 53, 53, 53, 53, 53, + (3,6,0): 33, 33, 33, 33, 33, 33, 33, 53, 53, 53, 53, 53, 53, 53, + (3,7,0): 33, 33, 33, 33, 33, 33, 33, 53, 53, 53, 53, 53, 53, 53, + (4,0,0): 14, 14, 14, 14, 14, 14, 14, 44, 44, 44, 44, 44, 44, 44, + (4,1,0): 14, 14, 14, 14, 14, 14, 14, 44, 44, 44, 44, 44, 44, 44, + (4,2,0): 24, 24, 24, 24, 24, 24, 24, 44, 44, 44, 44, 44, 44, 44, + (4,3,0): 24, 24, 24, 24, 24, 24, 24, 44, 44, 44, 44, 44, 44, 44, + (4,4,0): 24, 24, 24, 24, 24, 24, 24, 44, 44, 44, 44, 44, 44, 44, + (4,5,0): 24, 24, 24, 24, 24, 24, 24, 54, 54, 54, 54, 54, 54, 54, + (4,6,0): 34, 34, 34, 34, 34, 34, 34, 54, 54, 54, 54, 54, 54, 54, + (4,7,0): 34, 34, 34, 34, 34, 34, 34, 54, 54, 54, 54, 54, 54, 54, + (5,0,0): 15, 15, 15, 15, 15, 15, 15, 45, 45, 45, 45, 45, 45, 45, + (5,1,0): 15, 15, 15, 15, 15, 15, 15, 45, 45, 45, 45, 45, 45, 45, + (5,2,0): 25, 25, 25, 25, 25, 25, 25, 45, 45, 45, 45, 45, 45, 45, + (5,3,0): 25, 25, 25, 25, 25, 25, 25, 45, 45, 45, 45, 45, 45, 45, + (5,4,0): 25, 25, 25, 25, 25, 25, 25, 45, 45, 45, 45, 45, 45, 45, + (5,5,0): 25, 25, 25, 25, 25, 25, 25, 55, 55, 55, 55, 55, 55, 55, + (5,6,0): 35, 35, 35, 35, 35, 35, 35, 55, 55, 55, 55, 55, 55, 55, + (5,7,0): 35, 35, 35, 35, 35, 35, 35, 55, 55, 55, 55, 55, 55, 55 + } +} +} diff --git a/tools/test/h5repack/testfiles/3_1_vds.h5-vds_chunk2x5x8-v.ddl b/tools/test/h5repack/testfiles/3_1_vds.h5-vds_chunk2x5x8-v.ddl new file mode 100644 index 0000000..dcd172c --- /dev/null +++ b/tools/test/h5repack/testfiles/3_1_vds.h5-vds_chunk2x5x8-v.ddl @@ -0,0 +1,147 @@ +HDF5 "out-vds_chunk2x5x8.3_1_vds.h5" { +DATASET "vds_dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 5, 25, 8 ) / ( H5S_UNLIMITED, 25, 8 ) } + STORAGE_LAYOUT { + CHUNKED ( 2, 5, 8 ) + SIZE 4800 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE -9 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + DATA { + (0,0,0): -9, -9, -9, -9, -9, -9, -9, -9, + (0,1,0): 10, 10, 10, 10, 10, 10, 10, 10, + (0,2,0): 10, 10, 10, 10, 10, 10, 10, 10, + (0,3,0): -9, -9, -9, -9, -9, -9, -9, -9, + (0,4,0): 20, 20, 20, 20, 20, 20, 20, 20, + (0,5,0): 20, 20, 20, 20, 20, 20, 20, 20, + (0,6,0): 20, 20, 20, 20, 20, 20, 20, 20, + (0,7,0): 20, 20, 20, 20, 20, 20, 20, 20, + (0,8,0): -9, -9, -9, -9, -9, -9, -9, -9, + (0,9,0): 30, 30, 30, 30, 30, 30, 30, 30, + (0,10,0): 30, 30, 30, 30, 30, 30, 30, 30, + (0,11,0): -9, -9, -9, -9, -9, -9, -9, -9, + (0,12,0): 40, 40, 40, 40, 40, 40, 40, 40, + (0,13,0): 40, 40, 40, 40, 40, 40, 40, 40, + (0,14,0): 40, 40, 40, 40, 40, 40, 40, 40, + (0,15,0): 40, 40, 40, 40, 40, 40, 40, 40, + (0,16,0): -9, -9, -9, -9, -9, -9, -9, -9, + (0,17,0): 50, 50, 50, 50, 50, 50, 50, 50, + (0,18,0): 50, 50, 50, 50, 50, 50, 50, 50, + (0,19,0): -9, -9, -9, -9, -9, -9, -9, -9, + (0,20,0): 60, 60, 60, 60, 60, 60, 60, 60, + (0,21,0): 60, 60, 60, 60, 60, 60, 60, 60, + (0,22,0): 60, 60, 60, 60, 60, 60, 60, 60, + (0,23,0): 60, 60, 60, 60, 60, 60, 60, 60, + (0,24,0): -9, -9, -9, -9, -9, -9, -9, -9, + (1,0,0): -9, -9, -9, -9, -9, -9, -9, -9, + (1,1,0): 11, 11, 11, 11, 11, 11, 11, 11, + (1,2,0): 11, 11, 11, 11, 11, 11, 11, 11, + (1,3,0): -9, -9, -9, -9, -9, -9, -9, -9, + (1,4,0): 21, 21, 21, 21, 21, 21, 21, 21, + (1,5,0): 21, 21, 21, 21, 21, 21, 21, 21, + (1,6,0): 21, 21, 21, 21, 21, 21, 21, 21, + (1,7,0): 21, 21, 21, 21, 21, 21, 21, 21, + (1,8,0): -9, -9, -9, -9, -9, -9, -9, -9, + (1,9,0): 31, 31, 31, 31, 31, 31, 31, 31, + (1,10,0): 31, 31, 31, 31, 31, 31, 31, 31, + (1,11,0): -9, -9, -9, -9, -9, -9, -9, -9, + (1,12,0): 41, 41, 41, 41, 41, 41, 41, 41, + (1,13,0): 41, 41, 41, 41, 41, 41, 41, 41, + (1,14,0): 41, 41, 41, 41, 41, 41, 41, 41, + (1,15,0): 41, 41, 41, 41, 41, 41, 41, 41, + (1,16,0): -9, -9, -9, -9, -9, -9, -9, -9, + (1,17,0): 51, 51, 51, 51, 51, 51, 51, 51, + (1,18,0): 51, 51, 51, 51, 51, 51, 51, 51, + (1,19,0): -9, -9, -9, -9, -9, -9, -9, -9, + (1,20,0): 61, 61, 61, 61, 61, 61, 61, 61, + (1,21,0): 61, 61, 61, 61, 61, 61, 61, 61, + (1,22,0): 61, 61, 61, 61, 61, 61, 61, 61, + (1,23,0): 61, 61, 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-9, -9, -9, -9, -9, -9, -9, -9, + (3,20,0): 63, 63, 63, 63, 63, 63, 63, 63, + (3,21,0): 63, 63, 63, 63, 63, 63, 63, 63, + (3,22,0): 63, 63, 63, 63, 63, 63, 63, 63, + (3,23,0): 63, 63, 63, 63, 63, 63, 63, 63, + (3,24,0): -9, -9, -9, -9, -9, -9, -9, -9, + (4,0,0): -9, -9, -9, -9, -9, -9, -9, -9, + (4,1,0): 14, 14, 14, 14, 14, 14, 14, 14, + (4,2,0): 14, 14, 14, 14, 14, 14, 14, 14, + (4,3,0): -9, -9, -9, -9, -9, -9, -9, -9, + (4,4,0): 24, 24, 24, 24, 24, 24, 24, 24, + (4,5,0): 24, 24, 24, 24, 24, 24, 24, 24, + (4,6,0): 24, 24, 24, 24, 24, 24, 24, 24, + (4,7,0): 24, 24, 24, 24, 24, 24, 24, 24, + (4,8,0): -9, -9, -9, -9, -9, -9, -9, -9, + (4,9,0): 34, 34, 34, 34, 34, 34, 34, 34, + (4,10,0): 34, 34, 34, 34, 34, 34, 34, 34, + (4,11,0): -9, -9, -9, -9, -9, -9, -9, -9, + (4,12,0): 44, 44, 44, 44, 44, 44, 44, 44, + (4,13,0): 44, 44, 44, 44, 44, 44, 44, 44, + (4,14,0): 44, 44, 44, 44, 44, 44, 44, 44, + (4,15,0): 44, 44, 44, 44, 44, 44, 44, 44, + (4,16,0): -9, -9, -9, -9, -9, -9, -9, -9, + (4,17,0): 54, 54, 54, 54, 54, 54, 54, 54, + (4,18,0): 54, 54, 54, 54, 54, 54, 54, 54, + (4,19,0): -9, -9, -9, -9, -9, -9, -9, -9, + (4,20,0): 64, 64, 64, 64, 64, 64, 64, 64, + (4,21,0): 64, 64, 64, 64, 64, 64, 64, 64, + (4,22,0): 64, 64, 64, 64, 64, 64, 64, 64, + (4,23,0): 64, 64, 64, 64, 64, 64, 64, 64, + (4,24,0): -9, -9, -9, -9, -9, -9, -9, -9 + } +} +} diff --git a/tools/test/h5repack/testfiles/4_vds.h5-vds_compa-v.ddl b/tools/test/h5repack/testfiles/4_vds.h5-vds_compa-v.ddl new file mode 100644 index 0000000..1e8927c --- /dev/null +++ b/tools/test/h5repack/testfiles/4_vds.h5-vds_compa-v.ddl @@ -0,0 +1,58 @@ +HDF5 "out-vds_compa.4_vds.h5" { +DATASET "vds_dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 9, 4, 4 ) / ( 9, 4, 4 ) } + STORAGE_LAYOUT { + COMPACT + SIZE 576 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE -9 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_EARLY + } + DATA { + (0,0,0): 10, 10, 10, 10, + (0,1,0): 10, 10, 10, 10, + (0,2,0): 10, 10, 10, 10, + (0,3,0): 10, 10, 10, 10, + (1,0,0): 11, 11, 11, 11, + (1,1,0): 11, 11, 11, 11, + (1,2,0): 11, 11, 11, 11, + (1,3,0): 11, 11, 11, 11, + (2,0,0): 12, 12, 12, 12, + (2,1,0): 12, 12, 12, 12, + (2,2,0): 12, 12, 12, 12, + (2,3,0): 12, 12, 12, 12, + (3,0,0): 20, 20, 20, 20, + (3,1,0): 20, 20, 20, 20, + (3,2,0): 20, 20, 20, 20, + (3,3,0): 20, 20, 20, 20, + (4,0,0): 21, 21, 21, 21, + (4,1,0): 21, 21, 21, 21, + (4,2,0): 21, 21, 21, 21, + (4,3,0): 21, 21, 21, 21, + (5,0,0): 22, 22, 22, 22, + (5,1,0): 22, 22, 22, 22, + (5,2,0): 22, 22, 22, 22, + (5,3,0): 22, 22, 22, 22, + (6,0,0): 30, 30, 30, 30, + (6,1,0): 30, 30, 30, 30, + (6,2,0): 30, 30, 30, 30, + (6,3,0): 30, 30, 30, 30, + (7,0,0): 31, 31, 31, 31, + (7,1,0): 31, 31, 31, 31, + (7,2,0): 31, 31, 31, 31, + (7,3,0): 31, 31, 31, 31, + (8,0,0): 32, 32, 32, 32, + (8,1,0): 32, 32, 32, 32, + (8,2,0): 32, 32, 32, 32, + (8,3,0): 32, 32, 32, 32 + } +} +} diff --git a/tools/test/h5repack/testfiles/4_vds.h5-vds_conti-v.ddl b/tools/test/h5repack/testfiles/4_vds.h5-vds_conti-v.ddl new file mode 100644 index 0000000..c499b35 --- /dev/null +++ b/tools/test/h5repack/testfiles/4_vds.h5-vds_conti-v.ddl @@ -0,0 +1,59 @@ +HDF5 "out-vds_conti.4_vds.h5" { +DATASET "vds_dset" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 9, 4, 4 ) / ( 9, 4, 4 ) } + STORAGE_LAYOUT { + CONTIGUOUS + SIZE 576 + OFFSET 2144 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE -9 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_LATE + } + DATA { + (0,0,0): 10, 10, 10, 10, + (0,1,0): 10, 10, 10, 10, + (0,2,0): 10, 10, 10, 10, + (0,3,0): 10, 10, 10, 10, + (1,0,0): 11, 11, 11, 11, + (1,1,0): 11, 11, 11, 11, + (1,2,0): 11, 11, 11, 11, + (1,3,0): 11, 11, 11, 11, + (2,0,0): 12, 12, 12, 12, + (2,1,0): 12, 12, 12, 12, + (2,2,0): 12, 12, 12, 12, + (2,3,0): 12, 12, 12, 12, + (3,0,0): 20, 20, 20, 20, + (3,1,0): 20, 20, 20, 20, + (3,2,0): 20, 20, 20, 20, + (3,3,0): 20, 20, 20, 20, + (4,0,0): 21, 21, 21, 21, + (4,1,0): 21, 21, 21, 21, + (4,2,0): 21, 21, 21, 21, + (4,3,0): 21, 21, 21, 21, + (5,0,0): 22, 22, 22, 22, + (5,1,0): 22, 22, 22, 22, + (5,2,0): 22, 22, 22, 22, + (5,3,0): 22, 22, 22, 22, + (6,0,0): 30, 30, 30, 30, + (6,1,0): 30, 30, 30, 30, + (6,2,0): 30, 30, 30, 30, + (6,3,0): 30, 30, 30, 30, + (7,0,0): 31, 31, 31, 31, + (7,1,0): 31, 31, 31, 31, + (7,2,0): 31, 31, 31, 31, + (7,3,0): 31, 31, 31, 31, + (8,0,0): 32, 32, 32, 32, + (8,1,0): 32, 32, 32, 32, + (8,2,0): 32, 32, 32, 32, + (8,3,0): 32, 32, 32, 32 + } +} +} diff --git a/tools/test/h5repack/testfiles/README b/tools/test/h5repack/testfiles/README new file mode 100644 index 0000000..4096dee --- /dev/null +++ b/tools/test/h5repack/testfiles/README @@ -0,0 +1,5 @@ +h5repack_nested_8bit_enum_deflated.h5: +h5repack_nested_8bit_enum.h5: + enuberated 8bit type nested in compount type. Original file provided + by a user (HDFFV-8667) as a test file. Used h5copy to extract only the + Compound type dataset. The non-deflated version is produced by h5repack. diff --git a/tools/test/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl b/tools/test/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl new file mode 100644 index 0000000..75f54fa --- /dev/null +++ b/tools/test/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl @@ -0,0 +1,130 @@ +HDF5 "out-deflate_limit.h5repack_layout.h5" { +GROUP "/" { + DATASET "dset1" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 1150 (2.783:1 COMPRESSION) + } + FILTERS { + COMPRESSION DEFLATE { LEVEL 1 } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset2" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 1150 (2.783:1 COMPRESSION) + } + FILTERS { + COMPRESSION DEFLATE { LEVEL 1 } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset3" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 1150 (2.783:1 COMPRESSION) + } + FILTERS { + COMPRESSION DEFLATE { LEVEL 1 } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset4" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 1150 (2.783:1 COMPRESSION) + } + FILTERS { + COMPRESSION DEFLATE { LEVEL 1 } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_chunk" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 20, 10 ) + SIZE 1283 (2.494:1 COMPRESSION) + } + FILTERS { + COMPRESSION DEFLATE { LEVEL 1 } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_compact" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 1150 (2.783:1 COMPRESSION) + } + FILTERS { + COMPRESSION DEFLATE { LEVEL 1 } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_contiguous" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 1150 (2.783:1 COMPRESSION) + } + FILTERS { + COMPRESSION DEFLATE { LEVEL 1 } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } +} +} diff --git a/tools/test/h5repack/testfiles/h5repack-help.txt b/tools/test/h5repack/testfiles/h5repack-help.txt new file mode 100644 index 0000000..049e27d --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack-help.txt @@ -0,0 +1,125 @@ +usage: h5repack [OPTIONS] file1 file2 + file1 Input HDF5 File + file2 Output HDF5 File + OPTIONS + -h, --help Print a usage message and exit + -v, --verbose Verbose mode, print object information + -V, --version Print version number and exit + -n, --native Use a native HDF5 type when repacking + -L, --latest Use latest version of file format + -c L1, --compact=L1 Maximum number of links in header messages + -d L2, --indexed=L2 Minimum number of links in the indexed format + -s S[:F], --ssize=S[:F] Shared object header message minimum size + -m M, --minimum=M Do not apply the filter to datasets smaller than M + -e E, --file=E Name of file E with the -f and -l options + -u U, --ublock=U Name of file U with user block data to be added + -b B, --block=B Size of user block to be added + -M A, --metadata_block_size=A Metadata block size for H5Pset_meta_block_size + -t T, --threshold=T Threshold value for H5Pset_alignment + -a A, --alignment=A Alignment value for H5Pset_alignment + -f FILT, --filter=FILT Filter type + -l LAYT, --layout=LAYT Layout type + -S FS_STRGY, --fs_strategy=FS_STRGY File space management strategy + -T FS_THRD, --fs_threshold=FS_THRD Free-space section threshold + + M - is an integer greater than 1, size of dataset in bytes (default is 0) + E - is a filename. + S - is an integer + U - is a filename. + T - is an integer + A - is an integer greater than zero + B - is the user block size, any value that is 512 or greater and is + a power of 2 (1024 default) + F - is the shared object header message type, any of <dspace|dtype|fill| + pline|attr>. If F is not specified, S applies to all messages + + --enable-error-stack Prints messages from the HDF5 error stack as they + occur. + + FS_STRGY is the file space management strategy to use for the output file. + It is a string as listed below: + ALL_PERSIST - Use persistent free-space managers, aggregators and virtual file driver + for file space allocation + ALL - Use non-persistent free-space managers, aggregators and virtual file driver + for file space allocation + AGGR_VFD - Use aggregators and virtual file driver for file space allocation + VFD - Use virtual file driver for file space allocation + + FS_THRD is the free-space section threshold to use for the output file. + It is the minimum size (in bytes) of free-space sections to be tracked + by the the library's free-space managers. + + FILT - is a string with the format: + + <list of objects>:<name of filter>=<filter parameters> + + <list of objects> is a comma separated list of object names, meaning apply + compression only to those objects. If no names are specified, the filter + is applied to all objects + <name of filter> can be: + GZIP, to apply the HDF5 GZIP filter (GZIP compression) + SZIP, to apply the HDF5 SZIP filter (SZIP compression) + SHUF, to apply the HDF5 shuffle filter + FLET, to apply the HDF5 checksum filter + NBIT, to apply the HDF5 NBIT filter (NBIT compression) + SOFF, to apply the HDF5 Scale/Offset filter + UD, to apply a user defined filter + NONE, to remove all filters + <filter parameters> is optional filter parameter information + GZIP=<deflation level> from 1-9 + SZIP=<pixels per block,coding> pixels per block is a even number in + 2-32 and coding method is either EC or NN + SHUF (no parameter) + FLET (no parameter) + NBIT (no parameter) + SOFF=<scale_factor,scale_type> scale_factor is an integer and scale_type + is either IN or DS + UD=<filter_number,cd_value_count,value_1[,value_2,...,value_N]> + required values for filter_number,cd_value_count,value_1 + optional values for value_2 to value_N + NONE (no parameter) + + LAYT - is a string with the format: + + <list of objects>:<layout type>=<layout parameters> + + <list of objects> is a comma separated list of object names, meaning that + layout information is supplied for those objects. If no names are + specified, the layout type is applied to all objects + <layout type> can be: + CHUNK, to apply chunking layout + COMPA, to apply compact layout + CONTI, to apply contiguous layout + <layout parameters> is optional layout information + CHUNK=DIM[xDIM...xDIM], the chunk size of each dimension + COMPA (no parameter) + CONTI (no parameter) + +Examples of use: + +1) h5repack -v -f GZIP=1 file1 file2 + + GZIP compression with level 1 to all objects + +2) h5repack -v -f dset1:SZIP=8,NN file1 file2 + + SZIP compression with 8 pixels per block and NN coding method to object dset1 + +3) h5repack -v -l dset1,dset2:CHUNK=20x10 -f dset3,dset4,dset5:NONE file1 file2 + + Chunked layout, with a layout size of 20x10, to objects dset1 and dset2 + and remove filters to objects dset3, dset4, dset5 + +4) h5repack -L -c 10 -s 20:dtype file1 file2 + + Using latest file format with maximum compact group size of 10 and + and minimum shared datatype size of 20 + +5) h5repack -f SHUF -f GZIP=1 file1 file2 + + Add both filters SHUF and GZIP in this order to all datasets + +6) h5repack -f UD=307,1,9 file1 file2 + + Add bzip2 filter to all datasets + diff --git a/tools/test/h5repack/testfiles/h5repack.info b/tools/test/h5repack/testfiles/h5repack.info new file mode 100644 index 0000000..216948d --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack.info @@ -0,0 +1 @@ +-l dset1:CHUNK=20x20 -f dset1,dset2:GZIP=1 diff --git a/tools/test/h5repack/testfiles/h5repack_attr.h5 b/tools/test/h5repack/testfiles/h5repack_attr.h5 Binary files differnew file mode 100644 index 0000000..80df0be --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_attr.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_attr_refs.h5 b/tools/test/h5repack/testfiles/h5repack_attr_refs.h5 Binary files differnew file mode 100644 index 0000000..1b0ca34 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_attr_refs.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_deflate.h5 b/tools/test/h5repack/testfiles/h5repack_deflate.h5 Binary files differnew file mode 100644 index 0000000..4988491 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_deflate.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_early.h5 b/tools/test/h5repack/testfiles/h5repack_early.h5 Binary files differnew file mode 100644 index 0000000..d9a7ece --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_early.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_ext.bin b/tools/test/h5repack/testfiles/h5repack_ext.bin Binary files differnew file mode 100644 index 0000000..f858094 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_ext.bin diff --git a/tools/test/h5repack/testfiles/h5repack_ext.h5 b/tools/test/h5repack/testfiles/h5repack_ext.h5 Binary files differnew file mode 100644 index 0000000..8518b5b --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_ext.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_fill.h5 b/tools/test/h5repack/testfiles/h5repack_fill.h5 Binary files differnew file mode 100644 index 0000000..ac40089 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_fill.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_filters.h5 b/tools/test/h5repack/testfiles/h5repack_filters.h5 Binary files differnew file mode 100644 index 0000000..eabade8 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_filters.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_filters.h5-gzip_verbose_filters.tst b/tools/test/h5repack/testfiles/h5repack_filters.h5-gzip_verbose_filters.tst new file mode 100644 index 0000000..36e65b9 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_filters.h5-gzip_verbose_filters.tst @@ -0,0 +1,13 @@ +Objects to modify layout are... +Objects to apply filter are... + </dset_deflate> with GZIP filter + </dset_deflate>...Found +----------------------------------------- + Type Filter (Compression) Name +----------------------------------------- + group / + dset /dset_all + dset GZIP (0.995:1) /dset_deflate + dset /dset_fletcher32 + dset /dset_nbit + dset /dset_shuffle diff --git a/tools/test/h5repack/testfiles/h5repack_fletcher.h5 b/tools/test/h5repack/testfiles/h5repack_fletcher.h5 Binary files differnew file mode 100644 index 0000000..16ca4ef --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_fletcher.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_hlink.h5 b/tools/test/h5repack/testfiles/h5repack_hlink.h5 Binary files differnew file mode 100644 index 0000000..80c0fcc --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_hlink.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_layout.UD.h5 b/tools/test/h5repack/testfiles/h5repack_layout.UD.h5 Binary files differnew file mode 100644 index 0000000..caf2024 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_layout.UD.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_layout.UD.h5-plugin_none.ddl b/tools/test/h5repack/testfiles/h5repack_layout.UD.h5-plugin_none.ddl new file mode 100644 index 0000000..66c4c69 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_layout.UD.h5-plugin_none.ddl @@ -0,0 +1,130 @@ +HDF5 "out-plugin_none.h5repack_layout.UD.h5" { +GROUP "/" { + DATASET "dset1" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset2" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset3" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset4" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_chunk" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, H5S_UNLIMITED ) } + STORAGE_LAYOUT { + CHUNKED ( 20, 10 ) + SIZE 3200 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_compact" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_contiguous" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 + } + FILTERS { + NONE + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } +} +} diff --git a/tools/test/h5repack/testfiles/h5repack_layout.h5 b/tools/test/h5repack/testfiles/h5repack_layout.h5 Binary files differnew file mode 100644 index 0000000..4e53766 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_layout.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst b/tools/test/h5repack/testfiles/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst new file mode 100644 index 0000000..95cc4c6 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst @@ -0,0 +1,38 @@ +HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): + #000: (file name) line (number) in H5Dcreate2(): unable to create dataset + major: Dataset + minor: Unable to initialize object + #001: (file name) line (number) in H5D__create_named(): unable to create and link to dataset + major: Dataset + minor: Unable to initialize object + #002: (file name) line (number) in H5L_link_object(): unable to create new link to object + major: Links + minor: Unable to initialize object + #003: (file name) line (number) in H5L_create_real(): can't insert link + major: Symbol table + minor: Unable to insert object + #004: (file name) line (number) in H5G_traverse(): internal path traversal failed + major: Symbol table + minor: Object not found + #005: (file name) line (number) in H5G_traverse_real(): traversal operator failed + major: Symbol table + minor: Callback failed + #006: (file name) line (number) in H5L_link_cb(): unable to create object + major: Object header + minor: Unable to initialize object + #007: (file name) line (number) in H5O_obj_create(): unable to open object + major: Object header + minor: Can't open object + #008: (file name) line (number) in H5O__dset_create(): unable to create dataset + major: Dataset + minor: Unable to initialize object + #009: (file name) line (number) in H5D__create(): unable to construct layout information + major: Dataset + minor: Unable to initialize object + #010: (file name) line (number) in H5D__chunk_construct(): dimensionality of chunks doesn't match the dataspace + major: Dataset + minor: Bad value +H5tools-DIAG: Error detected in HDF5:tools (version (number)) thread (IDs): + #000: (file name) line (number) in do_copy_objects(): H5Dcreate2 failed + major: Failure in tools library + minor: error in function diff --git a/tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl b/tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl new file mode 100644 index 0000000..a8b4562 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl @@ -0,0 +1,158 @@ +HDF5 "out-plugin_test.h5repack_layout.h5" { +GROUP "/" { + DATASET "dset1" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 257 + COMMENT dynlib1 + PARAMS { 9 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset2" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 257 + COMMENT dynlib1 + PARAMS { 9 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset3" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 257 + COMMENT dynlib1 + PARAMS { 9 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset4" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 257 + COMMENT dynlib1 + PARAMS { 9 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_chunk" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 20, 10 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 257 + COMMENT dynlib1 + PARAMS { 9 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_compact" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 257 + COMMENT dynlib1 + PARAMS { 9 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_contiguous" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 257 + COMMENT dynlib1 + PARAMS { 9 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } +} +} diff --git a/tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl b/tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl new file mode 100644 index 0000000..3d09e14 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl @@ -0,0 +1,158 @@ +HDF5 "out-plugin_version_test.h5repack_layout.h5" { +GROUP "/" { + DATASET "dset1" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 260 + COMMENT dynlib4 + PARAMS { 9 1 9 235 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset2" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 260 + COMMENT dynlib4 + PARAMS { 9 1 9 235 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset3" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 260 + COMMENT dynlib4 + PARAMS { 9 1 9 235 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset4" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 260 + COMMENT dynlib4 + PARAMS { 9 1 9 235 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_chunk" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 20, 10 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 260 + COMMENT dynlib4 + PARAMS { 9 1 9 235 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_compact" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 260 + COMMENT dynlib4 + PARAMS { 9 1 9 235 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_contiguous" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 260 + COMMENT dynlib4 + PARAMS { 9 1 9 235 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } +} +} diff --git a/tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_zero.tst b/tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_zero.tst new file mode 100644 index 0000000..0993d5b --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_zero.tst @@ -0,0 +1,9 @@ +Objects to modify layout are... +Objects to apply filter are... + User Defined 250 +Making file <out-plugin_zero.h5repack_layout.h5>... +----------------------------------------- + Type Filter (Compression) Name +----------------------------------------- + group / +h5repack error: <h5repack_layout.h5>: Could not copy data to: out-plugin_zero.h5repack_layout.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_layout.h5.ddl b/tools/test/h5repack/testfiles/h5repack_layout.h5.ddl new file mode 100644 index 0000000..00c74f4 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_layout.h5.ddl @@ -0,0 +1,606 @@ +HDF5 "h5repack_layout.h5" { +GROUP "/" { + DATASET "dset1" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + DATA { + (0,0): 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, + (0,18): 18, 19, + (1,0): 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, + (1,16): 36, 37, 38, 39, + (2,0): 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, + (2,16): 56, 57, 58, 59, + (3,0): 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, + (3,16): 76, 77, 78, 79, + (4,0): 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, + (4,16): 96, 97, 98, 99, + (5,0): 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, + (5,13): 113, 114, 115, 116, 117, 118, 119, + (6,0): 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, + (6,13): 133, 134, 135, 136, 137, 138, 139, + (7,0): 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, + (7,13): 153, 154, 155, 156, 157, 158, 159, + (8,0): 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, + (8,13): 173, 174, 175, 176, 177, 178, 179, + (9,0): 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, + (9,13): 193, 194, 195, 196, 197, 198, 199, + (10,0): 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, + (10,12): 212, 213, 214, 215, 216, 217, 218, 219, + (11,0): 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, + (11,12): 232, 233, 234, 235, 236, 237, 238, 239, + (12,0): 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, + (12,12): 252, 253, 254, 255, 256, 257, 258, 259, + (13,0): 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, + (13,12): 272, 273, 274, 275, 276, 277, 278, 279, + (14,0): 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, + (14,12): 292, 293, 294, 295, 296, 297, 298, 299, + (15,0): 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, + (15,12): 312, 313, 314, 315, 316, 317, 318, 319, + (16,0): 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, + (16,12): 332, 333, 334, 335, 336, 337, 338, 339, + (17,0): 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, + (17,12): 352, 353, 354, 355, 356, 357, 358, 359, + (18,0): 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, + (18,12): 372, 373, 374, 375, 376, 377, 378, 379, + (19,0): 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, + (19,12): 392, 393, 394, 395, 396, 397, 398, 399, + (20,0): 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, + (20,12): 412, 413, 414, 415, 416, 417, 418, 419, + (21,0): 420, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, + (21,12): 432, 433, 434, 435, 436, 437, 438, 439, + (22,0): 440, 441, 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, + (22,12): 452, 453, 454, 455, 456, 457, 458, 459, + (23,0): 460, 461, 462, 463, 464, 465, 466, 467, 468, 469, 470, 471, + (23,12): 472, 473, 474, 475, 476, 477, 478, 479, + (24,0): 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, + (24,12): 492, 493, 494, 495, 496, 497, 498, 499, + (25,0): 500, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, + (25,12): 512, 513, 514, 515, 516, 517, 518, 519, + (26,0): 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, + (26,12): 532, 533, 534, 535, 536, 537, 538, 539, + (27,0): 540, 541, 542, 543, 544, 545, 546, 547, 548, 549, 550, 551, + (27,12): 552, 553, 554, 555, 556, 557, 558, 559, + (28,0): 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, + (28,12): 572, 573, 574, 575, 576, 577, 578, 579, + (29,0): 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, + (29,12): 592, 593, 594, 595, 596, 597, 598, 599, + (30,0): 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, + (30,12): 612, 613, 614, 615, 616, 617, 618, 619, + (31,0): 620, 621, 622, 623, 624, 625, 626, 627, 628, 629, 630, 631, + (31,12): 632, 633, 634, 635, 636, 637, 638, 639, + (32,0): 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, + (32,12): 652, 653, 654, 655, 656, 657, 658, 659, + (33,0): 660, 661, 662, 663, 664, 665, 666, 667, 668, 669, 670, 671, + (33,12): 672, 673, 674, 675, 676, 677, 678, 679, + (34,0): 680, 681, 682, 683, 684, 685, 686, 687, 688, 689, 690, 691, + (34,12): 692, 693, 694, 695, 696, 697, 698, 699, + (35,0): 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, + (35,12): 712, 713, 714, 715, 716, 717, 718, 719, + (36,0): 720, 721, 722, 723, 724, 725, 726, 727, 728, 729, 730, 731, + (36,12): 732, 733, 734, 735, 736, 737, 738, 739, + (37,0): 740, 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, + (37,12): 752, 753, 754, 755, 756, 757, 758, 759, + (38,0): 760, 761, 762, 763, 764, 765, 766, 767, 768, 769, 770, 771, + (38,12): 772, 773, 774, 775, 776, 777, 778, 779, + (39,0): 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, + (39,12): 792, 793, 794, 795, 796, 797, 798, 799 + } + } + DATASET "dset2" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + DATA { + (0,0): 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, + (0,18): 18, 19, + (1,0): 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, + (1,16): 36, 37, 38, 39, + (2,0): 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, + (2,16): 56, 57, 58, 59, + (3,0): 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, + (3,16): 76, 77, 78, 79, + (4,0): 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, + (4,16): 96, 97, 98, 99, + (5,0): 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, + (5,13): 113, 114, 115, 116, 117, 118, 119, + (6,0): 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, + (6,13): 133, 134, 135, 136, 137, 138, 139, + (7,0): 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, + (7,13): 153, 154, 155, 156, 157, 158, 159, + (8,0): 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, + (8,13): 173, 174, 175, 176, 177, 178, 179, + (9,0): 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, + (9,13): 193, 194, 195, 196, 197, 198, 199, + (10,0): 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, + (10,12): 212, 213, 214, 215, 216, 217, 218, 219, + (11,0): 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, + (11,12): 232, 233, 234, 235, 236, 237, 238, 239, + (12,0): 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, + (12,12): 252, 253, 254, 255, 256, 257, 258, 259, + (13,0): 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, + (13,12): 272, 273, 274, 275, 276, 277, 278, 279, + (14,0): 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, + (14,12): 292, 293, 294, 295, 296, 297, 298, 299, + (15,0): 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, + (15,12): 312, 313, 314, 315, 316, 317, 318, 319, + (16,0): 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, + (16,12): 332, 333, 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(37,12): 752, 753, 754, 755, 756, 757, 758, 759, + (38,0): 760, 761, 762, 763, 764, 765, 766, 767, 768, 769, 770, 771, + (38,12): 772, 773, 774, 775, 776, 777, 778, 779, + (39,0): 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, + (39,12): 792, 793, 794, 795, 796, 797, 798, 799 + } + } + DATASET "dset_compact" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + DATA { + (0,0): 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, + (0,18): 18, 19, + (1,0): 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, + (1,16): 36, 37, 38, 39, + (2,0): 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, + (2,16): 56, 57, 58, 59, + (3,0): 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, + (3,16): 76, 77, 78, 79, + (4,0): 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, + (4,16): 96, 97, 98, 99, + (5,0): 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, + (5,13): 113, 114, 115, 116, 117, 118, 119, + (6,0): 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, + (6,13): 133, 134, 135, 136, 137, 138, 139, + (7,0): 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, + (7,13): 153, 154, 155, 156, 157, 158, 159, + (8,0): 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, + (8,13): 173, 174, 175, 176, 177, 178, 179, + (9,0): 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, + (9,13): 193, 194, 195, 196, 197, 198, 199, + (10,0): 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, + (10,12): 212, 213, 214, 215, 216, 217, 218, 219, + (11,0): 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, + (11,12): 232, 233, 234, 235, 236, 237, 238, 239, + (12,0): 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, + (12,12): 252, 253, 254, 255, 256, 257, 258, 259, + (13,0): 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, + (13,12): 272, 273, 274, 275, 276, 277, 278, 279, + (14,0): 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, + (14,12): 292, 293, 294, 295, 296, 297, 298, 299, + (15,0): 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, + (15,12): 312, 313, 314, 315, 316, 317, 318, 319, + (16,0): 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, + (16,12): 332, 333, 334, 335, 336, 337, 338, 339, + (17,0): 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, + (17,12): 352, 353, 354, 355, 356, 357, 358, 359, + (18,0): 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, + (18,12): 372, 373, 374, 375, 376, 377, 378, 379, + (19,0): 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, + (19,12): 392, 393, 394, 395, 396, 397, 398, 399, + (20,0): 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, + (20,12): 412, 413, 414, 415, 416, 417, 418, 419, + (21,0): 420, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, + (21,12): 432, 433, 434, 435, 436, 437, 438, 439, + (22,0): 440, 441, 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, + (22,12): 452, 453, 454, 455, 456, 457, 458, 459, + (23,0): 460, 461, 462, 463, 464, 465, 466, 467, 468, 469, 470, 471, + (23,12): 472, 473, 474, 475, 476, 477, 478, 479, + (24,0): 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, + (24,12): 492, 493, 494, 495, 496, 497, 498, 499, + (25,0): 500, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, + (25,12): 512, 513, 514, 515, 516, 517, 518, 519, + (26,0): 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, + (26,12): 532, 533, 534, 535, 536, 537, 538, 539, + (27,0): 540, 541, 542, 543, 544, 545, 546, 547, 548, 549, 550, 551, + (27,12): 552, 553, 554, 555, 556, 557, 558, 559, + (28,0): 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, + (28,12): 572, 573, 574, 575, 576, 577, 578, 579, + (29,0): 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, + (29,12): 592, 593, 594, 595, 596, 597, 598, 599, + (30,0): 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, + (30,12): 612, 613, 614, 615, 616, 617, 618, 619, + (31,0): 620, 621, 622, 623, 624, 625, 626, 627, 628, 629, 630, 631, + (31,12): 632, 633, 634, 635, 636, 637, 638, 639, + (32,0): 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, + (32,12): 652, 653, 654, 655, 656, 657, 658, 659, + (33,0): 660, 661, 662, 663, 664, 665, 666, 667, 668, 669, 670, 671, + (33,12): 672, 673, 674, 675, 676, 677, 678, 679, + (34,0): 680, 681, 682, 683, 684, 685, 686, 687, 688, 689, 690, 691, + (34,12): 692, 693, 694, 695, 696, 697, 698, 699, + (35,0): 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, + (35,12): 712, 713, 714, 715, 716, 717, 718, 719, + (36,0): 720, 721, 722, 723, 724, 725, 726, 727, 728, 729, 730, 731, + (36,12): 732, 733, 734, 735, 736, 737, 738, 739, + (37,0): 740, 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, + (37,12): 752, 753, 754, 755, 756, 757, 758, 759, + (38,0): 760, 761, 762, 763, 764, 765, 766, 767, 768, 769, 770, 771, + (38,12): 772, 773, 774, 775, 776, 777, 778, 779, + (39,0): 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, + (39,12): 792, 793, 794, 795, 796, 797, 798, 799 + } + } + DATASET "dset_contiguous" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + DATA { + (0,0): 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, + (0,18): 18, 19, + (1,0): 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, + (1,16): 36, 37, 38, 39, + (2,0): 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, + (2,16): 56, 57, 58, 59, + (3,0): 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, + (3,16): 76, 77, 78, 79, + (4,0): 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, + (4,16): 96, 97, 98, 99, + (5,0): 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, + (5,13): 113, 114, 115, 116, 117, 118, 119, + (6,0): 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, + (6,13): 133, 134, 135, 136, 137, 138, 139, + (7,0): 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, + (7,13): 153, 154, 155, 156, 157, 158, 159, + (8,0): 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, + (8,13): 173, 174, 175, 176, 177, 178, 179, + (9,0): 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, + (9,13): 193, 194, 195, 196, 197, 198, 199, + (10,0): 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, + (10,12): 212, 213, 214, 215, 216, 217, 218, 219, + (11,0): 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, + (11,12): 232, 233, 234, 235, 236, 237, 238, 239, + (12,0): 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, + (12,12): 252, 253, 254, 255, 256, 257, 258, 259, + (13,0): 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, + (13,12): 272, 273, 274, 275, 276, 277, 278, 279, + (14,0): 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, + (14,12): 292, 293, 294, 295, 296, 297, 298, 299, + (15,0): 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, + (15,12): 312, 313, 314, 315, 316, 317, 318, 319, + (16,0): 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, + (16,12): 332, 333, 334, 335, 336, 337, 338, 339, + (17,0): 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, + (17,12): 352, 353, 354, 355, 356, 357, 358, 359, + (18,0): 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, + (18,12): 372, 373, 374, 375, 376, 377, 378, 379, + (19,0): 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, + (19,12): 392, 393, 394, 395, 396, 397, 398, 399, + (20,0): 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, + (20,12): 412, 413, 414, 415, 416, 417, 418, 419, + (21,0): 420, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, + (21,12): 432, 433, 434, 435, 436, 437, 438, 439, + (22,0): 440, 441, 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, + (22,12): 452, 453, 454, 455, 456, 457, 458, 459, + (23,0): 460, 461, 462, 463, 464, 465, 466, 467, 468, 469, 470, 471, + (23,12): 472, 473, 474, 475, 476, 477, 478, 479, + (24,0): 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, + (24,12): 492, 493, 494, 495, 496, 497, 498, 499, + (25,0): 500, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, + (25,12): 512, 513, 514, 515, 516, 517, 518, 519, + (26,0): 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, + (26,12): 532, 533, 534, 535, 536, 537, 538, 539, + (27,0): 540, 541, 542, 543, 544, 545, 546, 547, 548, 549, 550, 551, + (27,12): 552, 553, 554, 555, 556, 557, 558, 559, + (28,0): 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, + (28,12): 572, 573, 574, 575, 576, 577, 578, 579, + (29,0): 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, + (29,12): 592, 593, 594, 595, 596, 597, 598, 599, + (30,0): 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, + (30,12): 612, 613, 614, 615, 616, 617, 618, 619, + (31,0): 620, 621, 622, 623, 624, 625, 626, 627, 628, 629, 630, 631, + (31,12): 632, 633, 634, 635, 636, 637, 638, 639, + (32,0): 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, + (32,12): 652, 653, 654, 655, 656, 657, 658, 659, + (33,0): 660, 661, 662, 663, 664, 665, 666, 667, 668, 669, 670, 671, + (33,12): 672, 673, 674, 675, 676, 677, 678, 679, + (34,0): 680, 681, 682, 683, 684, 685, 686, 687, 688, 689, 690, 691, + (34,12): 692, 693, 694, 695, 696, 697, 698, 699, + (35,0): 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, + (35,12): 712, 713, 714, 715, 716, 717, 718, 719, + (36,0): 720, 721, 722, 723, 724, 725, 726, 727, 728, 729, 730, 731, + (36,12): 732, 733, 734, 735, 736, 737, 738, 739, + (37,0): 740, 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, + (37,12): 752, 753, 754, 755, 756, 757, 758, 759, + (38,0): 760, 761, 762, 763, 764, 765, 766, 767, 768, 769, 770, 771, + (38,12): 772, 773, 774, 775, 776, 777, 778, 779, + (39,0): 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, + (39,12): 792, 793, 794, 795, 796, 797, 798, 799 + } + } +} +} diff --git a/tools/test/h5repack/testfiles/h5repack_layout2.h5 b/tools/test/h5repack/testfiles/h5repack_layout2.h5 Binary files differnew file mode 100644 index 0000000..f6821e5 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_layout2.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_layout3.h5 b/tools/test/h5repack/testfiles/h5repack_layout3.h5 Binary files differnew file mode 100644 index 0000000..6d2de41 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_layout3.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_layouto.h5 b/tools/test/h5repack/testfiles/h5repack_layouto.h5 Binary files differnew file mode 100644 index 0000000..a038e68 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_layouto.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_named_dtypes.h5 b/tools/test/h5repack/testfiles/h5repack_named_dtypes.h5 Binary files differnew file mode 100644 index 0000000..85c1352 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_named_dtypes.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_nbit.h5 b/tools/test/h5repack/testfiles/h5repack_nbit.h5 Binary files differnew file mode 100644 index 0000000..ac71bee --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_nbit.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_nested_8bit_enum.h5 b/tools/test/h5repack/testfiles/h5repack_nested_8bit_enum.h5 Binary files differnew file mode 100644 index 0000000..f1bd8e9 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_nested_8bit_enum.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_nested_8bit_enum_deflated.h5 b/tools/test/h5repack/testfiles/h5repack_nested_8bit_enum_deflated.h5 Binary files differnew file mode 100644 index 0000000..2e66da2 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_nested_8bit_enum_deflated.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_objs.h5 b/tools/test/h5repack/testfiles/h5repack_objs.h5 Binary files differnew file mode 100644 index 0000000..284b0ac --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_objs.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_refs.h5 b/tools/test/h5repack/testfiles/h5repack_refs.h5 Binary files differnew file mode 100644 index 0000000..2a1ec9b --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_refs.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_shuffle.h5 b/tools/test/h5repack/testfiles/h5repack_shuffle.h5 Binary files differnew file mode 100644 index 0000000..c14e2cb --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_shuffle.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_soffset.h5 b/tools/test/h5repack/testfiles/h5repack_soffset.h5 Binary files differnew file mode 100644 index 0000000..2acd867 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_soffset.h5 diff --git a/tools/test/h5repack/testfiles/h5repack_szip.h5 b/tools/test/h5repack/testfiles/h5repack_szip.h5 Binary files differnew file mode 100644 index 0000000..b16d169 --- /dev/null +++ b/tools/test/h5repack/testfiles/h5repack_szip.h5 diff --git a/tools/test/h5repack/testfiles/plugin_none.h5repack_layout.UD.h5.tst b/tools/test/h5repack/testfiles/plugin_none.h5repack_layout.UD.h5.tst new file mode 100644 index 0000000..4fb6906 --- /dev/null +++ b/tools/test/h5repack/testfiles/plugin_none.h5repack_layout.UD.h5.tst @@ -0,0 +1,14 @@ +Objects to modify layout are... +Objects to apply filter are... + Uncompress all +----------------------------------------- + Type Filter (Compression) Name +----------------------------------------- + group / + dset (1.000:1) /dset1 + dset (1.000:1) /dset2 + dset (1.000:1) /dset3 + dset (1.000:1) /dset4 + dset (1.000:1) /dset_chunk + dset (1.000:1) /dset_compact + dset (1.000:1) /dset_contiguous diff --git a/tools/test/h5repack/testfiles/plugin_test.h5repack_layout.h5.tst b/tools/test/h5repack/testfiles/plugin_test.h5repack_layout.h5.tst new file mode 100644 index 0000000..7f9bd6e --- /dev/null +++ b/tools/test/h5repack/testfiles/plugin_test.h5repack_layout.h5.tst @@ -0,0 +1,14 @@ +Objects to modify layout are... +Objects to apply filter are... + User Defined 257 +----------------------------------------- + Type Filter (Compression) Name +----------------------------------------- + group / + dset UD (1.000:1) /dset1 + dset UD (1.000:1) /dset2 + dset UD (1.000:1) /dset3 + dset UD (1.000:1) /dset4 + dset UD (1.000:1) /dset_chunk + dset UD (1.000:1) /dset_compact + dset UD (1.000:1) /dset_contiguous diff --git a/tools/test/h5repack/testfiles/plugin_version_test.h5repack_layout.h5.tst b/tools/test/h5repack/testfiles/plugin_version_test.h5repack_layout.h5.tst new file mode 100644 index 0000000..1a496c6 --- /dev/null +++ b/tools/test/h5repack/testfiles/plugin_version_test.h5repack_layout.h5.tst @@ -0,0 +1,14 @@ +Objects to modify layout are... +Objects to apply filter are... + User Defined 260 +----------------------------------------- + Type Filter (Compression) Name +----------------------------------------- + group / + dset UD (1.000:1) /dset1 + dset UD (1.000:1) /dset2 + dset UD (1.000:1) /dset3 + dset UD (1.000:1) /dset4 + dset UD (1.000:1) /dset_chunk + dset UD (1.000:1) /dset_compact + dset UD (1.000:1) /dset_contiguous diff --git a/tools/test/h5repack/testfiles/ublock.bin b/tools/test/h5repack/testfiles/ublock.bin new file mode 100644 index 0000000..b2d03f3 --- /dev/null +++ b/tools/test/h5repack/testfiles/ublock.bin @@ -0,0 +1 @@ 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\ No newline at end of file diff --git a/tools/test/h5repack/testh5repack_detect_szip.c b/tools/test/h5repack/testh5repack_detect_szip.c new file mode 100644 index 0000000..e91b2f7 --- /dev/null +++ b/tools/test/h5repack/testh5repack_detect_szip.c @@ -0,0 +1,62 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the files COPYING and Copyright.html. COPYING can be found at the root * + * of the source code distribution tree; Copyright.html can be found at the * + * root level of an installed copy of the electronic HDF5 document set and * + * is linked from the top-level documents page. It can also be found at * + * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * + * access to either file, you may request a copy from help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +#include <stdio.h> +#include "h5repack.h" +#include "h5tools.h" +#include "h5tools_utils.h" +#include "h5test.h" + + +/* Name of tool */ +#define PROGRAMNAME "h5repack_detect_szip" + +/*------------------------------------------------------------------------- + * Function: main + * + * Purpose: detects szip encoder, prints "yes" or "no" to stdout. + * Intended to be used in test scripts. + * + * Return: + * + * Programmer: + * + * Date: + * + * Comments: + * + * Modifications: + * + *------------------------------------------------------------------------- + */ + + +int main(void) +{ + h5tools_setprogname(PROGRAMNAME); + h5tools_setstatus(EXIT_SUCCESS); + + /* Initialize h5tools lib */ + h5tools_init(); + +#ifdef H5_HAVE_FILTER_SZIP + if (h5tools_can_encode(H5Z_FILTER_SZIP) == 1) { + printf("yes\n"); + return(1); + } +#endif /* H5_HAVE_FILTER_SZIP */ + printf("no\n"); + return(0); +} |