diff options
Diffstat (limited to 'tools/test/misc/h5perf_gentest.c')
| -rw-r--r-- | tools/test/misc/h5perf_gentest.c | 654 |
1 files changed, 349 insertions, 305 deletions
diff --git a/tools/test/misc/h5perf_gentest.c b/tools/test/misc/h5perf_gentest.c index f50e5fb..8fa1c74 100644 --- a/tools/test/misc/h5perf_gentest.c +++ b/tools/test/misc/h5perf_gentest.c @@ -21,70 +21,70 @@ #include <stdio.h> #include <stdlib.h> -#define FNAME "test_perf.h5" -#define NGROUPS 20 -#define NDSETS 20 -#define NATTRS 20 -#define DIM0 40 -#define NROWS 100 -#define NTYPES 9 -#define MAXVLEN 10 -#define FIXED_LEN 8 - -typedef enum { SOLID=0, LIQUID, GAS, PLASMA } phase_t; +#define FNAME "test_perf.h5" +#define NGROUPS 20 +#define NDSETS 20 +#define NATTRS 20 +#define DIM0 40 +#define NROWS 100 +#define NTYPES 9 +#define MAXVLEN 10 +#define FIXED_LEN 8 + +typedef enum { SOLID = 0, LIQUID, GAS, PLASMA } phase_t; typedef struct { - int i; - unsigned long long l; - float f; - double d; - char s[FIXED_LEN]; - phase_t e; - float f_array[FIXED_LEN]; - hvl_t i_vlen; - char *s_vlen; + int i; + unsigned long long l; + float f; + double d; + char s[FIXED_LEN]; + phase_t e; + float f_array[FIXED_LEN]; + hvl_t i_vlen; + char * s_vlen; } test_comp_t; typedef struct { - int zipcode; - char *city; + int zipcode; + char *city; } zipcode_t; -int add_attrs(hid_t oid, int idx); -int add_attr(hid_t oid, const char *name, hid_t tid, hid_t sid, void *buf) ; -herr_t create_perf_test_file(const char *fname, int ngrps, int ndsets, - int nattrs, hsize_t nrows, hsize_t dim0, hsize_t chunk, int vlen, - int compressed, int latest); +int add_attrs(hid_t oid, int idx); +int add_attr(hid_t oid, const char *name, hid_t tid, hid_t sid, void *buf); +herr_t create_perf_test_file(const char *fname, int ngrps, int ndsets, int nattrs, hsize_t nrows, + hsize_t dim0, hsize_t chunk, int vlen, int compressed, int latest); -int main (int argc, char *argv[]) +int +main(int argc, char *argv[]) { char fname[32]; - int i, ngrps=NGROUPS, ndsets=NDSETS, nattrs=NATTRS, dim0=DIM0, - chunk=DIM0/10+1, nrows=NROWS, vlen=MAXVLEN, l=0, z=0; + int i, ngrps = NGROUPS, ndsets = NDSETS, nattrs = NATTRS, dim0 = DIM0, chunk = DIM0 / 10 + 1, + nrows = NROWS, vlen = MAXVLEN, l = 0, z = 0; memset(fname, 0, 32); - for (i=1; i<argc; i++) { - if (strcmp(argv[i], "-f")==0) - strcpy(fname, argv[i+1]); - else if (strcmp(argv[i], "-g")==0) - ngrps = atoi(argv[i+1]); - else if (strcmp(argv[i], "-d")==0) - ndsets = atoi(argv[i+1]); - else if (strcmp(argv[i], "-a")==0) - nattrs = atoi(argv[i+1]); - else if (strcmp(argv[i], "-r")==0) - nrows = atoi(argv[i+1]); - else if (strcmp(argv[i], "-s")==0) - dim0 = atoi(argv[i+1]); - else if (strcmp(argv[i], "-c")==0) - chunk = atoi(argv[i+1]); - else if (strcmp(argv[i], "-v")==0) - vlen = atoi(argv[i+1]); - else if (strcmp(argv[i], "-l")==0) + for (i = 1; i < argc; i++) { + if (strcmp(argv[i], "-f") == 0) + strcpy(fname, argv[i + 1]); + else if (strcmp(argv[i], "-g") == 0) + ngrps = atoi(argv[i + 1]); + else if (strcmp(argv[i], "-d") == 0) + ndsets = atoi(argv[i + 1]); + else if (strcmp(argv[i], "-a") == 0) + nattrs = atoi(argv[i + 1]); + else if (strcmp(argv[i], "-r") == 0) + nrows = atoi(argv[i + 1]); + else if (strcmp(argv[i], "-s") == 0) + dim0 = atoi(argv[i + 1]); + else if (strcmp(argv[i], "-c") == 0) + chunk = atoi(argv[i + 1]); + else if (strcmp(argv[i], "-v") == 0) + vlen = atoi(argv[i + 1]); + else if (strcmp(argv[i], "-l") == 0) l = 1; - else if (strcmp(argv[i], "-z")==0) + else if (strcmp(argv[i], "-z") == 0) z = 1; - else if (strcmp(argv[i], "-h")==0) { + else if (strcmp(argv[i], "-h") == 0) { HDprintf("\nOPTONS:\n"); HDprintf("\t-f F:\tname of the test file (default: %s).\n", FNAME); HDprintf("\t-g N:\tnumber of top level groups (default: %d).\n", NGROUPS); @@ -92,7 +92,7 @@ int main (int argc, char *argv[]) HDprintf("\t-a N:\tnumber of attributes (default: %d).\n", NATTRS); HDprintf("\t-r N:\tnumber of rows in the large compound dataset (default: %d).\n", NROWS); HDprintf("\t-s N:\tsize of dim0 in datasets (default: %d).\n", DIM0); - HDprintf("\t-c N:\tchunk size of dim0 (default: %d).\n", (DIM0/10+1)); + HDprintf("\t-c N:\tchunk size of dim0 (default: %d).\n", (DIM0 / 10 + 1)); HDprintf("\t-v N:\tmax vlen size (default: %d).\n", MAXVLEN); HDprintf("\t-l:\tuse latest format (default: no).\n"); HDprintf("\t-z:\tuse gzip compression (default: no).\n"); @@ -103,11 +103,11 @@ int main (int argc, char *argv[]) } } - if (strlen(fname)<=0) + if (strlen(fname) <= 0) HDsprintf(fname, FNAME); - create_perf_test_file(fname, ngrps, ndsets, nattrs, (hsize_t)nrows, - (hsize_t)dim0, (hsize_t)chunk, vlen, z, l); + create_perf_test_file(fname, ngrps, ndsets, nattrs, (hsize_t)nrows, (hsize_t)dim0, (hsize_t)chunk, vlen, + z, l); return 0; } @@ -130,339 +130,378 @@ int main (int argc, char *argv[]) Programmer: Peter Cao <xcao@hdfgroup.org>, Jan. 2013 ****************************************************************************/ -herr_t create_perf_test_file(const char *fname, int ngrps, int ndsets, - int nattrs, hsize_t nrows, hsize_t dim0, hsize_t chunk, int vlen, - int compressed, int latest) +herr_t +create_perf_test_file(const char *fname, int ngrps, int ndsets, int nattrs, hsize_t nrows, hsize_t dim0, + hsize_t chunk, int vlen, int compressed, int latest) { - int i, j, k; - hid_t fid, sid_null, sid_scalar, sid_1d, sid_2d, did, aid, sid_2, sid_large, - fapl=H5P_DEFAULT, dcpl=H5P_DEFAULT, gid1, gid2, cmp_tid, tid_str, - tid_enum, tid_array_f, tid_vlen_i, tid_vlen_s; - char name[32], tmp_name1[32], tmp_name2[32], tmp_name3[32]; - hsize_t dims[1]={dim0}, dims2d[2]={dim0, (dim0/4+1)}, dims_array[1]={FIXED_LEN}, - dim1[1]={2}; - char *enum_names[4] = {"SOLID", "LIQUID", "GAS", "PLASMA"}; - test_comp_t *buf_comp=NULL, *buf_comp_large=NULL; - int *buf_int=NULL; - float (*buf_float_a)[FIXED_LEN]=NULL; - double **buf_double2d=NULL; - hvl_t *buf_vlen_i=NULL; - char (*buf_str)[FIXED_LEN]; - char **buf_vlen_s=NULL; - hobj_ref_t buf_ref[2]; + int i, j, k; + hid_t fid, sid_null, sid_scalar, sid_1d, sid_2d, did, aid, sid_2, sid_large, + fapl = H5P_DEFAULT, dcpl = H5P_DEFAULT, gid1, gid2, cmp_tid, tid_str, tid_enum, tid_array_f, + tid_vlen_i, tid_vlen_s; + char name[32], tmp_name1[32], tmp_name2[32], tmp_name3[32]; + hsize_t dims[1] = {dim0}, dims2d[2] = {dim0, (dim0 / 4 + 1)}, dims_array[1] = {FIXED_LEN}, dim1[1] = {2}; + char * enum_names[4] = {"SOLID", "LIQUID", "GAS", "PLASMA"}; + test_comp_t *buf_comp = NULL, *buf_comp_large = NULL; + int * buf_int = NULL; + float(*buf_float_a)[FIXED_LEN] = NULL; + double **buf_double2d = NULL; + hvl_t * buf_vlen_i = NULL; + char(*buf_str)[FIXED_LEN]; + char ** buf_vlen_s = NULL; + hobj_ref_t buf_ref[2]; hdset_reg_ref_t buf_reg_ref[2]; - size_t offset, len; - herr_t status; - char *names[NTYPES] = { "int", "ulong", "float", "double", "fixed string", - "enum", "fixed float array", "vlen int array", "vlen strings"}; - hid_t types[NTYPES] = { H5T_NATIVE_INT, H5T_NATIVE_UINT64, H5T_NATIVE_FLOAT, - H5T_NATIVE_DOUBLE, tid_str, tid_enum, tid_array_f, tid_vlen_i, tid_vlen_s}; - hsize_t coords[4][2] = { {0, 1}, {3, 5}, {1, 0}, {2, 4}}, start=0, stride=1, count=1; - - if (nrows < NROWS) nrows = NROWS; - if (ngrps<NGROUPS) ngrps=NGROUPS; - if (ndsets<NDSETS) ndsets=NDSETS; - if (nattrs<NATTRS) nattrs=NATTRS; - if (dim0<DIM0) dim0=DIM0; - if (chunk>dim0) chunk=dim0/4; - if (chunk<1) chunk = 1; - if (vlen<1) vlen = MAXVLEN; + size_t offset, len; + herr_t status; + char * names[NTYPES] = {"int", + "ulong", + "float", + "double", + "fixed string", + "enum", + "fixed float array", + "vlen int array", + "vlen strings"}; + hid_t types[NTYPES] = {H5T_NATIVE_INT, H5T_NATIVE_UINT64, H5T_NATIVE_FLOAT, H5T_NATIVE_DOUBLE, tid_str, + tid_enum, tid_array_f, tid_vlen_i, tid_vlen_s}; + hsize_t coords[4][2] = {{0, 1}, {3, 5}, {1, 0}, {2, 4}}, start = 0, stride = 1, count = 1; + + if (nrows < NROWS) + nrows = NROWS; + if (ngrps < NGROUPS) + ngrps = NGROUPS; + if (ndsets < NDSETS) + ndsets = NDSETS; + if (nattrs < NATTRS) + nattrs = NATTRS; + if (dim0 < DIM0) + dim0 = DIM0; + if (chunk > dim0) + chunk = dim0 / 4; + if (chunk < 1) + chunk = 1; + if (vlen < 1) + vlen = MAXVLEN; /* create fixed string datatype */ - types[4] = tid_str = H5Tcopy (H5T_C_S1); - H5Tset_size (tid_str, FIXED_LEN); + types[4] = tid_str = H5Tcopy(H5T_C_S1); + H5Tset_size(tid_str, FIXED_LEN); /* create enum datatype */ types[5] = tid_enum = H5Tenum_create(H5T_NATIVE_INT); - for (i = (int) SOLID; i <= (int) PLASMA; i++) { - phase_t val = (phase_t) i; - status = H5Tenum_insert (tid_enum, enum_names[i], &val); + for (i = (int)SOLID; i <= (int)PLASMA; i++) { + phase_t val = (phase_t)i; + status = H5Tenum_insert(tid_enum, enum_names[i], &val); } /* create float array datatype */ - types[6] = tid_array_f = H5Tarray_create (H5T_NATIVE_FLOAT, 1, dims_array); + types[6] = tid_array_f = H5Tarray_create(H5T_NATIVE_FLOAT, 1, dims_array); /* create variable length integer datatypes */ - types[7] = tid_vlen_i = H5Tvlen_create (H5T_NATIVE_INT); + types[7] = tid_vlen_i = H5Tvlen_create(H5T_NATIVE_INT); /* create variable length string datatype */ - types[8] = tid_vlen_s = H5Tcopy (H5T_C_S1); - H5Tset_size (tid_vlen_s, H5T_VARIABLE); + types[8] = tid_vlen_s = H5Tcopy(H5T_C_S1); + H5Tset_size(tid_vlen_s, H5T_VARIABLE); /* create compound datatypes */ - cmp_tid = H5Tcreate (H5T_COMPOUND, sizeof (test_comp_t)); - offset = 0; - for (i=0; i<NTYPES-2; i++) { + cmp_tid = H5Tcreate(H5T_COMPOUND, sizeof(test_comp_t)); + offset = 0; + for (i = 0; i < NTYPES - 2; i++) { H5Tinsert(cmp_tid, names[i], offset, types[i]); offset += H5Tget_size(types[i]); } H5Tinsert(cmp_tid, names[7], offset, types[7]); - offset += sizeof (hvl_t); + offset += sizeof(hvl_t); H5Tinsert(cmp_tid, names[8], offset, types[8]); /* create dataspace */ - sid_1d = H5Screate_simple (1, dims, NULL); - sid_2d = H5Screate_simple (2, dims2d, NULL); - sid_2 = H5Screate_simple (1, dim1, NULL); - sid_large = H5Screate_simple (1, &nrows, NULL); - sid_null = H5Screate (H5S_NULL); - sid_scalar = H5Screate (H5S_SCALAR); + sid_1d = H5Screate_simple(1, dims, NULL); + sid_2d = H5Screate_simple(2, dims2d, NULL); + sid_2 = H5Screate_simple(1, dim1, NULL); + sid_large = H5Screate_simple(1, &nrows, NULL); + sid_null = H5Screate(H5S_NULL); + sid_scalar = H5Screate(H5S_SCALAR); /* create fid access property */ - fapl = H5Pcreate (H5P_FILE_ACCESS); - H5Pset_libver_bounds (fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST); + fapl = H5Pcreate(H5P_FILE_ACCESS); + H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST); /* create dataset creation property */ - dcpl = H5Pcreate (H5P_DATASET_CREATE); + dcpl = H5Pcreate(H5P_DATASET_CREATE); /* set dataset chunk */ - if (chunk>0) { - H5Pset_chunk (dcpl, 1, &chunk); + if (chunk > 0) { + H5Pset_chunk(dcpl, 1, &chunk); } /* set dataset compression */ if (compressed) { - if (chunk<=0) { - chunk = dim0/10+1;; - H5Pset_chunk (dcpl, 1, &chunk); + if (chunk <= 0) { + chunk = dim0 / 10 + 1; + ; + H5Pset_chunk(dcpl, 1, &chunk); } - H5Pset_shuffle (dcpl); - H5Pset_deflate (dcpl, 6); + H5Pset_shuffle(dcpl); + H5Pset_deflate(dcpl, 6); } /* allocate buffers */ - buf_comp = (test_comp_t *)calloc(dim0, sizeof(test_comp_t)); - buf_comp_large = (test_comp_t *)calloc(nrows, sizeof(test_comp_t)); - buf_int = (int *)calloc(dim0, sizeof(int)); - buf_float_a = malloc(dim0*sizeof(*buf_float_a)); - buf_vlen_i = (hvl_t *)calloc(dim0, sizeof (hvl_t)); - buf_vlen_s = (char **)calloc(dim0, sizeof(char *)); - buf_str = malloc(dim0*sizeof (*buf_str)); + buf_comp = (test_comp_t *)calloc(dim0, sizeof(test_comp_t)); + buf_comp_large = (test_comp_t *)calloc(nrows, sizeof(test_comp_t)); + buf_int = (int *)calloc(dim0, sizeof(int)); + buf_float_a = malloc(dim0 * sizeof(*buf_float_a)); + buf_vlen_i = (hvl_t *)calloc(dim0, sizeof(hvl_t)); + buf_vlen_s = (char **)calloc(dim0, sizeof(char *)); + buf_str = malloc(dim0 * sizeof(*buf_str)); /* allocate array of doulbe pointers */ - buf_double2d = (double **)calloc(dims2d[0],sizeof(double *)); + buf_double2d = (double **)calloc(dims2d[0], sizeof(double *)); /* allocate a contigous chunk of memory for the data */ - buf_double2d[0] = (double *)calloc( dims2d[0]*dims2d[1],sizeof(double) ); + buf_double2d[0] = (double *)calloc(dims2d[0] * dims2d[1], sizeof(double)); /* assign memory city to pointer array */ - for (i=1; i <dims2d[0]; i++) buf_double2d[i] = buf_double2d[0]+i*dims2d[1]; + for (i = 1; i < dims2d[0]; i++) + buf_double2d[i] = buf_double2d[0] + i * dims2d[1]; /* fill buffer values */ len = 1; - for (i=0; i<dims[0]; i++) { - buf_comp[i].i = buf_int[i] = i-2147483648; - buf_comp[i].l = 0xffffffffffffffff-i; - buf_comp[i].f = 1.0/(i+1.0); - buf_comp[i].d = 987654321.0*i+1.0/(i+1.0); - buf_comp[i].e = (phase_t) (i % (int) (PLASMA + 1)); - - for (j=0; j<FIXED_LEN; j++) { - buf_comp[i].f_array[j] = buf_float_a[i][j] = i*100+j; - buf_str[i][j] = 'a' + (i%26); + for (i = 0; i < dims[0]; i++) { + buf_comp[i].i = buf_int[i] = i - 2147483648; + buf_comp[i].l = 0xffffffffffffffff - i; + buf_comp[i].f = 1.0 / (i + 1.0); + buf_comp[i].d = 987654321.0 * i + 1.0 / (i + 1.0); + buf_comp[i].e = (phase_t)(i % (int)(PLASMA + 1)); + + for (j = 0; j < FIXED_LEN; j++) { + buf_comp[i].f_array[j] = buf_float_a[i][j] = i * 100 + j; + buf_str[i][j] = 'a' + (i % 26); } - buf_str[i][FIXED_LEN-1] = 0; + buf_str[i][FIXED_LEN - 1] = 0; strcpy(buf_comp[i].s, buf_str[i]); - len = (1-cos(i/8.0))/2*vlen+1; - if (!i) len = vlen; + len = (1 - cos(i / 8.0)) / 2 * vlen + 1; + if (!i) + len = vlen; buf_vlen_i[i].len = len; - buf_vlen_i[i].p = (int *)calloc(len, sizeof(int)); - for (j=0; j<len; j++) ((int*)(buf_vlen_i[i].p))[j] = i*100+j; + buf_vlen_i[i].p = (int *)calloc(len, sizeof(int)); + for (j = 0; j < len; j++) + ((int *)(buf_vlen_i[i].p))[j] = i * 100 + j; buf_comp[i].i_vlen = buf_vlen_i[i]; buf_vlen_s[i] = (char *)calloc(len, sizeof(char)); - for (j=0; j<len-1; j++) - buf_vlen_s[i][j] = j%26+'A'; + for (j = 0; j < len - 1; j++) + buf_vlen_s[i][j] = j % 26 + 'A'; buf_comp[i].s_vlen = buf_vlen_s[i]; - for (j=0; j<dims2d[1]; j++) - buf_double2d[i][j] = i+j/10000.0; + for (j = 0; j < dims2d[1]; j++) + buf_double2d[i][j] = i + j / 10000.0; } - for (i=0; i<nrows; i++) { - buf_comp_large[i].i = i-2147483648; - buf_comp_large[i].l = 0xffffffffffffffff-i; - buf_comp_large[i].f = 1.0/(i+1.0); - buf_comp_large[i].d = 987654321.0*i+1.0/(i+1.0); - buf_comp_large[i].e = (phase_t) (i % (int) (PLASMA + 1)); - for (j=0; j<FIXED_LEN-1; j++) { - buf_comp_large[i].f_array[j] = i*100+j; - buf_comp_large[i].s[j] = 'a' + (i%26); + for (i = 0; i < nrows; i++) { + buf_comp_large[i].i = i - 2147483648; + buf_comp_large[i].l = 0xffffffffffffffff - i; + buf_comp_large[i].f = 1.0 / (i + 1.0); + buf_comp_large[i].d = 987654321.0 * i + 1.0 / (i + 1.0); + buf_comp_large[i].e = (phase_t)(i % (int)(PLASMA + 1)); + for (j = 0; j < FIXED_LEN - 1; j++) { + buf_comp_large[i].f_array[j] = i * 100 + j; + buf_comp_large[i].s[j] = 'a' + (i % 26); } - len = i%vlen+1; + len = i % vlen + 1; buf_comp_large[i].i_vlen.len = len; - buf_comp_large[i].i_vlen.p = (int *)calloc(len, sizeof(int)); - for (j=0; j<len; j++) ((int*)(buf_comp_large[i].i_vlen.p))[j] = i*100+j; - buf_comp_large[i].s_vlen = (char *)calloc(i+2, sizeof(char)); - for (j=0; j<i+1; j++) (buf_comp_large[i].s_vlen)[j] = j%26+'A'; + buf_comp_large[i].i_vlen.p = (int *)calloc(len, sizeof(int)); + for (j = 0; j < len; j++) + ((int *)(buf_comp_large[i].i_vlen.p))[j] = i * 100 + j; + buf_comp_large[i].s_vlen = (char *)calloc(i + 2, sizeof(char)); + for (j = 0; j < i + 1; j++) + (buf_comp_large[i].s_vlen)[j] = j % 26 + 'A'; } /* create file */ if (latest) - fid = H5Fcreate (fname, H5F_ACC_TRUNC, H5P_DEFAULT, fapl); + fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, fapl); else - fid = H5Fcreate (fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + fid = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); add_attrs(fid, 0); HDsprintf(name, "a cmp ds of %d rows", nrows); - did = H5Dcreate (fid, name, cmp_tid, sid_large, H5P_DEFAULT, dcpl, H5P_DEFAULT); - H5Dwrite (did, cmp_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_comp_large); + did = H5Dcreate(fid, name, cmp_tid, sid_large, H5P_DEFAULT, dcpl, H5P_DEFAULT); + H5Dwrite(did, cmp_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_comp_large); add_attrs(did, 0); H5Dclose(did); // /* add attributes*/ - gid1 = H5Gcreate (fid, "attributes", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (nattrs<1) nattrs = 1; - i=0; - while (i<nattrs) i += add_attrs(gid1, i); + gid1 = H5Gcreate(fid, "attributes", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (nattrs < 1) + nattrs = 1; + i = 0; + while (i < nattrs) + i += add_attrs(gid1, i); H5Gclose(gid1); /* add many sub groups to a group*/ - gid1 = H5Gcreate (fid, "groups", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + gid1 = H5Gcreate(fid, "groups", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); add_attrs(gid1, 0); - for (i=0; i<ngrps; i++) { + for (i = 0; i < ngrps; i++) { /* create sub groups */ HDsprintf(name, "g%02d", i); - gid2 = H5Gcreate (gid1, name, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (i<10) add_attrs(gid2, 0); + gid2 = H5Gcreate(gid1, name, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (i < 10) + add_attrs(gid2, 0); H5Gclose(gid2); } H5Gclose(gid1); /* add many datasets to a group */ - gid1 = H5Gcreate (fid, "datasets", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + gid1 = H5Gcreate(fid, "datasets", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); add_attrs(gid1, 0); - for (j=0; j<ndsets; j+=12) { + for (j = 0; j < ndsets; j += 12) { /* 1 add a null dataset */ HDsprintf(name, "%05d null dataset", j); - did = H5Dcreate (gid1, name, H5T_STD_I32LE, sid_null, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - if (!j) add_attrs(did, j); + did = H5Dcreate(gid1, name, H5T_STD_I32LE, sid_null, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (!j) + add_attrs(did, j); H5Dclose(did); /* 2 add scalar int point */ HDsprintf(name, "%05d scalar int point", j); - did = H5Dcreate (gid1, name, H5T_NATIVE_INT, sid_scalar, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - H5Dwrite (did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &j); - if (!j) add_attrs(did, j); + did = H5Dcreate(gid1, name, H5T_NATIVE_INT, sid_scalar, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &j); + if (!j) + add_attrs(did, j); H5Dclose(did); /* 3 scalar vlen string */ HDsprintf(name, "%05d scalar vlen string", j); - did = H5Dcreate (gid1, name, tid_vlen_s, sid_scalar, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - H5Dwrite (did, tid_vlen_s, H5S_ALL, H5S_ALL, H5P_DEFAULT, &buf_vlen_s[0]); - if (!j) add_attrs(did, j); + did = H5Dcreate(gid1, name, tid_vlen_s, sid_scalar, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + H5Dwrite(did, tid_vlen_s, H5S_ALL, H5S_ALL, H5P_DEFAULT, &buf_vlen_s[0]); + if (!j) + add_attrs(did, j); H5Dclose(did); /* 4 add fixed-length float array */ HDsprintf(name, "%05d fixed-length float array", j); - did = H5Dcreate (gid1, name, tid_array_f, sid_1d, H5P_DEFAULT, dcpl, H5P_DEFAULT); - H5Dwrite (did, tid_array_f, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_float_a); - if (!j) add_attrs(did, j); + did = H5Dcreate(gid1, name, tid_array_f, sid_1d, H5P_DEFAULT, dcpl, H5P_DEFAULT); + H5Dwrite(did, tid_array_f, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_float_a); + if (!j) + add_attrs(did, j); H5Dclose(did); /* 5 add fixed-length strings */ HDsprintf(name, "%05d fixed-length strings", j); - did = H5Dcreate (gid1, name, tid_str, sid_1d, H5P_DEFAULT, dcpl, H5P_DEFAULT); - H5Dwrite (did, tid_str, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_str); - if (!j) add_attrs(did, j); + did = H5Dcreate(gid1, name, tid_str, sid_1d, H5P_DEFAULT, dcpl, H5P_DEFAULT); + H5Dwrite(did, tid_str, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_str); + if (!j) + add_attrs(did, j); H5Dclose(did); /* 6 add compound data */ HDsprintf(name, "%05d compund data", j); - did = H5Dcreate (gid1, name, cmp_tid, sid_1d, H5P_DEFAULT, dcpl, H5P_DEFAULT); - H5Dwrite (did, cmp_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_comp); - if (!j) add_attrs(did, j); + did = H5Dcreate(gid1, name, cmp_tid, sid_1d, H5P_DEFAULT, dcpl, H5P_DEFAULT); + H5Dwrite(did, cmp_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_comp); + if (!j) + add_attrs(did, j); H5Dclose(did); /* 7 add 2D double */ HDsprintf(name, "%05d 2D double", j); - strcpy (tmp_name1, name); - did = H5Dcreate (gid1, name, H5T_NATIVE_DOUBLE, sid_2d, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - H5Dwrite (did, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_double2d[0]); - if (!j) add_attrs(did, j); + strcpy(tmp_name1, name); + did = H5Dcreate(gid1, name, H5T_NATIVE_DOUBLE, sid_2d, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + H5Dwrite(did, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_double2d[0]); + if (!j) + add_attrs(did, j); H5Dclose(did); /* 8 add 1D int array */ HDsprintf(name, "%05d 1D int array", j); - did = H5Dcreate (gid1, name, H5T_NATIVE_INT, sid_1d, H5P_DEFAULT, dcpl, H5P_DEFAULT); - H5Dwrite (did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_int); - if (!j) add_attrs(did, j); + did = H5Dcreate(gid1, name, H5T_NATIVE_INT, sid_1d, H5P_DEFAULT, dcpl, H5P_DEFAULT); + H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_int); + if (!j) + add_attrs(did, j); H5Dclose(did); /* 9 add vlen int array */ HDsprintf(name, "%05d vlen int array", j); - strcpy (tmp_name2, name); - did = H5Dcreate (gid1, name, tid_vlen_i, sid_1d, H5P_DEFAULT, dcpl, H5P_DEFAULT); - H5Dwrite (did, tid_vlen_i, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_vlen_i); - if (!j) add_attrs(did, j); + strcpy(tmp_name2, name); + did = H5Dcreate(gid1, name, tid_vlen_i, sid_1d, H5P_DEFAULT, dcpl, H5P_DEFAULT); + H5Dwrite(did, tid_vlen_i, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_vlen_i); + if (!j) + add_attrs(did, j); H5Dclose(did); /* 10 add vlen strings */ HDsprintf(name, "%05d vlen strings", j); - strcpy (tmp_name3, name); - did = H5Dcreate (gid1, name, tid_vlen_s, sid_1d, H5P_DEFAULT, dcpl, H5P_DEFAULT); - H5Dwrite (did, tid_vlen_s, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_vlen_s); - if (!j) add_attrs(did, j); + strcpy(tmp_name3, name); + did = H5Dcreate(gid1, name, tid_vlen_s, sid_1d, H5P_DEFAULT, dcpl, H5P_DEFAULT); + H5Dwrite(did, tid_vlen_s, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_vlen_s); + if (!j) + add_attrs(did, j); H5Dclose(did); /* 11 add object refs */ - H5Rcreate(&buf_ref[0],gid1, ".", H5R_OBJECT, (hid_t)-1); - H5Rcreate(&buf_ref[1],gid1, tmp_name3, H5R_OBJECT, (hid_t)-1); + H5Rcreate(&buf_ref[0], gid1, ".", H5R_OBJECT, (hid_t)-1); + H5Rcreate(&buf_ref[1], gid1, tmp_name3, H5R_OBJECT, (hid_t)-1); HDsprintf(name, "%05d obj refs", j); - did = H5Dcreate (gid1, name, H5T_STD_REF_OBJ, sid_2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - H5Dwrite (did, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_ref); - if (!j) add_attrs(did, j); + did = H5Dcreate(gid1, name, H5T_STD_REF_OBJ, sid_2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + H5Dwrite(did, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_ref); + if (!j) + add_attrs(did, j); H5Dclose(did); /* 12 add region refs */ - H5Sselect_elements (sid_2d, H5S_SELECT_SET, 4, coords[0]); - H5Rcreate(&buf_reg_ref[0],gid1, tmp_name1, H5R_DATASET_REGION, sid_2d); + H5Sselect_elements(sid_2d, H5S_SELECT_SET, 4, coords[0]); + H5Rcreate(&buf_reg_ref[0], gid1, tmp_name1, H5R_DATASET_REGION, sid_2d); H5Sselect_none(sid_2d); - count = dims[0]/2+1; - H5Sselect_hyperslab (sid_1d, H5S_SELECT_SET, &start, &stride, &count,NULL); - H5Rcreate(&buf_reg_ref[1],gid1, tmp_name2, H5R_DATASET_REGION, sid_1d); + count = dims[0] / 2 + 1; + H5Sselect_hyperslab(sid_1d, H5S_SELECT_SET, &start, &stride, &count, NULL); + H5Rcreate(&buf_reg_ref[1], gid1, tmp_name2, H5R_DATASET_REGION, sid_1d); H5Sselect_none(sid_1d); HDsprintf(name, "%05d region refs", j); - did = H5Dcreate (gid1, name, H5T_STD_REF_DSETREG, sid_2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - H5Dwrite (did, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_reg_ref); - if (!j) add_attrs(did, j); + did = H5Dcreate(gid1, name, H5T_STD_REF_DSETREG, sid_2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + H5Dwrite(did, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf_reg_ref); + if (!j) + add_attrs(did, j); H5Dclose(did); } H5Gclose(gid1); - H5Tclose (tid_array_f); - H5Tclose (tid_vlen_i); - H5Tclose (tid_vlen_s); - H5Tclose (tid_enum); - H5Tclose (tid_str); - H5Tclose (cmp_tid); - H5Pclose (dcpl); - H5Pclose (fapl); - H5Sclose (sid_1d); - H5Sclose (sid_2d); - H5Sclose (sid_2); - H5Sclose (sid_large); - H5Sclose (sid_null); - H5Sclose (sid_scalar); - H5Fclose (fid); - - for (i=0; i<dims[0]; i++) { - if (buf_vlen_i[i].p) free(buf_vlen_i[i].p); - if (buf_vlen_s[i]) free(buf_vlen_s[i]); + H5Tclose(tid_array_f); + H5Tclose(tid_vlen_i); + H5Tclose(tid_vlen_s); + H5Tclose(tid_enum); + H5Tclose(tid_str); + H5Tclose(cmp_tid); + H5Pclose(dcpl); + H5Pclose(fapl); + H5Sclose(sid_1d); + H5Sclose(sid_2d); + H5Sclose(sid_2); + H5Sclose(sid_large); + H5Sclose(sid_null); + H5Sclose(sid_scalar); + H5Fclose(fid); + + for (i = 0; i < dims[0]; i++) { + if (buf_vlen_i[i].p) + free(buf_vlen_i[i].p); + if (buf_vlen_s[i]) + free(buf_vlen_s[i]); } - for (i=0; i<nrows; i++) { - if (buf_comp_large[i].i_vlen.p) free(buf_comp_large[i].i_vlen.p); - if (buf_comp_large[i].s_vlen) free(buf_comp_large[i].s_vlen); + for (i = 0; i < nrows; i++) { + if (buf_comp_large[i].i_vlen.p) + free(buf_comp_large[i].i_vlen.p); + if (buf_comp_large[i].s_vlen) + free(buf_comp_large[i].s_vlen); } - free (buf_comp); - free (buf_comp_large); - free (buf_int); - free (buf_float_a); - free (buf_double2d[0]); - free (buf_double2d); - free (buf_str); + free(buf_comp); + free(buf_comp_large); + free(buf_int); + free(buf_float_a); + free(buf_double2d[0]); + free(buf_double2d); + free(buf_str); free(buf_vlen_i); free(buf_vlen_s); @@ -470,13 +509,14 @@ herr_t create_perf_test_file(const char *fname, int ngrps, int ndsets, } /* add a single attribute */ -int add_attr(hid_t oid, const char *name, hid_t tid, hid_t sid, void *buf) +int +add_attr(hid_t oid, const char *name, hid_t tid, hid_t sid, void *buf) { hid_t aid; - aid = H5Acreate (oid, name, tid, sid, H5P_DEFAULT, H5P_DEFAULT); - if (aid <0) - return 0; + aid = H5Acreate(oid, name, tid, sid, H5P_DEFAULT, H5P_DEFAULT); + if (aid < 0) + return 0; H5Awrite(aid, tid, buf); @@ -490,60 +530,61 @@ int add_attr(hid_t oid, const char *name, hid_t tid, hid_t sid, void *buf) returns the number of attributes added to the objects. */ -int add_attrs(hid_t oid, int idx) +int +add_attrs(hid_t oid, int idx) { - char name[32]; - int i0, i1, i2, j, nattrs=0; - hid_t aid, tid, tid1, sid; - hvl_t i_vlen[4]; - hobj_ref_t ref; - zipcode_t cmp_data[4]; - unsigned int i = 0xffffffff; - long long l = -2147483647; - float f = 123456789.987654321; - double d = 987654321.123456789; - char *s[7] = {"Parting", "is such", "sweeter", "sorrow."}; - float f_array[4] = {1.0, 2.22, 3.333, 4.444}; - char *s_vlen[4] = {"Parting", "is such", "sweet", "sorrow."}; - hsize_t dims1[1]={1}, dims2[1]={4}, dims3[2]={3,5}; - int int3d[4][3][5]; - size_t offset = 0; - - for (i0=0; i0<4; i0++) { - i_vlen[i0].len = (i0+1); - i_vlen[i0].p = (int *)calloc(i_vlen[i0].len, sizeof(int)); - for (j=0; j<i_vlen[i0].len; j++) - ((int *)i_vlen[i0].p)[j] = i0*100+j; - for (i1=0; i1<3; i1++) { - for (i2=0; i2<5; i2++) - int3d[i0][i1][i2] = i0*i1-i1*i2+i0*i2; + char name[32]; + int i0, i1, i2, j, nattrs = 0; + hid_t aid, tid, tid1, sid; + hvl_t i_vlen[4]; + hobj_ref_t ref; + zipcode_t cmp_data[4]; + unsigned int i = 0xffffffff; + long long l = -2147483647; + float f = 123456789.987654321; + double d = 987654321.123456789; + char * s[7] = {"Parting", "is such", "sweeter", "sorrow."}; + float f_array[4] = {1.0, 2.22, 3.333, 4.444}; + char * s_vlen[4] = {"Parting", "is such", "sweet", "sorrow."}; + hsize_t dims1[1] = {1}, dims2[1] = {4}, dims3[2] = {3, 5}; + int int3d[4][3][5]; + size_t offset = 0; + + for (i0 = 0; i0 < 4; i0++) { + i_vlen[i0].len = (i0 + 1); + i_vlen[i0].p = (int *)calloc(i_vlen[i0].len, sizeof(int)); + for (j = 0; j < i_vlen[i0].len; j++) + ((int *)i_vlen[i0].p)[j] = i0 * 100 + j; + for (i1 = 0; i1 < 3; i1++) { + for (i2 = 0; i2 < 5; i2++) + int3d[i0][i1][i2] = i0 * i1 - i1 * i2 + i0 * i2; } } cmp_data[0].zipcode = 01001; - cmp_data[0].city = "Agawam, Massachusetts"; + cmp_data[0].city = "Agawam, Massachusetts"; cmp_data[1].zipcode = 99950; - cmp_data[1].city = "Ketchikan, Alaska"; + cmp_data[1].city = "Ketchikan, Alaska"; cmp_data[2].zipcode = 00501; - cmp_data[2].city = "Holtsville, New York"; + cmp_data[2].city = "Holtsville, New York"; cmp_data[3].zipcode = 61820; - cmp_data[3].city = "Champaign, Illinois"; + cmp_data[3].city = "Champaign, Illinois"; /* 1 scalar point */ - sid = H5Screate (H5S_SCALAR); + sid = H5Screate(H5S_SCALAR); HDsprintf(name, "%05d scalar int", idx); nattrs += add_attr(oid, name, H5T_NATIVE_UINT, sid, &i); HDsprintf(name, "%05d scalar ulong", idx); nattrs += add_attr(oid, name, H5T_NATIVE_INT64, sid, &l); HDsprintf(name, "%05d scalar str", idx); - tid = H5Tcopy (H5T_C_S1); - H5Tset_size (tid, H5T_VARIABLE); + tid = H5Tcopy(H5T_C_S1); + H5Tset_size(tid, H5T_VARIABLE); nattrs += add_attr(oid, name, tid, sid, &s[2]); H5Tclose(tid); H5Sclose(sid); /* 4 single point */ - sid = H5Screate_simple (1, dims1, NULL); + sid = H5Screate_simple(1, dims1, NULL); H5Rcreate(&ref, oid, ".", H5R_OBJECT, (hid_t)-1); HDsprintf(name, "%05d single float", idx); nattrs += add_attr(oid, name, H5T_NATIVE_FLOAT, sid, &f); @@ -554,14 +595,14 @@ int add_attrs(hid_t oid, int idx) H5Sclose(sid); /* 7 fixed length 1D array */ - sid = H5Screate_simple (1, dims1, NULL); - tid = H5Tarray_create (H5T_NATIVE_FLOAT, 1, dims2); + sid = H5Screate_simple(1, dims1, NULL); + tid = H5Tarray_create(H5T_NATIVE_FLOAT, 1, dims2); HDsprintf(name, "%05d array float", idx); nattrs += add_attr(oid, name, tid, sid, &f_array[0]); H5Tclose(tid); - tid = H5Tcopy (H5T_C_S1); - H5Tset_size (tid, strlen(s[0])+1); - tid1 = H5Tarray_create (tid, 1, dims2); + tid = H5Tcopy(H5T_C_S1); + H5Tset_size(tid, strlen(s[0]) + 1); + tid1 = H5Tarray_create(tid, 1, dims2); HDsprintf(name, "%05d array str", idx); nattrs += add_attr(oid, name, tid1, sid, s); H5Tclose(tid1); @@ -569,40 +610,43 @@ int add_attrs(hid_t oid, int idx) H5Sclose(sid); /* 9 fixed length 2D int arrays */ - sid = H5Screate_simple (1, dims2, NULL); - tid = H5Tarray_create (H5T_NATIVE_INT, 2, dims3); + sid = H5Screate_simple(1, dims2, NULL); + tid = H5Tarray_create(H5T_NATIVE_INT, 2, dims3); HDsprintf(name, "%05d array int 2D", idx); nattrs += add_attr(oid, name, tid, sid, int3d[0][0]); H5Tclose(tid); H5Sclose(sid); /* 10 variable length arrays */ - sid = H5Screate_simple (1, dims2, NULL); - tid = H5Tcopy (H5T_C_S1); - H5Tset_size (tid, H5T_VARIABLE); + sid = H5Screate_simple(1, dims2, NULL); + tid = H5Tcopy(H5T_C_S1); + H5Tset_size(tid, H5T_VARIABLE); HDsprintf(name, "%05d vlen strings", idx); nattrs += add_attr(oid, name, tid, sid, s_vlen); H5Tclose(tid); - tid = H5Tvlen_create (H5T_NATIVE_INT);; + tid = H5Tvlen_create(H5T_NATIVE_INT); + ; HDsprintf(name, "%05d vlen int array", idx); nattrs += add_attr(oid, name, tid, sid, i_vlen); H5Tclose(tid); H5Sclose(sid); /* 12 compound data */ - sid = H5Screate_simple (1, dims2, NULL); - tid = H5Tcreate (H5T_COMPOUND, sizeof (zipcode_t)); - tid1 = H5Tcopy (H5T_C_S1); - H5Tset_size (tid1, H5T_VARIABLE); - H5Tinsert (tid, "zip code", 0, H5T_NATIVE_INT); offset += sizeof(H5T_NATIVE_INT); - H5Tinsert (tid, "City", offset, tid1); offset += sizeof(char *); + sid = H5Screate_simple(1, dims2, NULL); + tid = H5Tcreate(H5T_COMPOUND, sizeof(zipcode_t)); + tid1 = H5Tcopy(H5T_C_S1); + H5Tset_size(tid1, H5T_VARIABLE); + H5Tinsert(tid, "zip code", 0, H5T_NATIVE_INT); + offset += sizeof(H5T_NATIVE_INT); + H5Tinsert(tid, "City", offset, tid1); + offset += sizeof(char *); HDsprintf(name, "%05d compound data", idx); nattrs += add_attr(oid, name, tid, sid, cmp_data); H5Tclose(tid1); H5Tclose(tid); H5Sclose(sid); - for (i0=0; i0<4; i0++) + for (i0 = 0; i0 < 4; i0++) free(i_vlen[i0].p); return nattrs; |