diff options
Diffstat (limited to 'tools')
92 files changed, 3762 insertions, 902 deletions
diff --git a/tools/Makefile.in b/tools/Makefile.in index fc80fd0..5d2a203 100644 --- a/tools/Makefile.in +++ b/tools/Makefile.in @@ -309,7 +309,6 @@ libdir = @libdir@ libexecdir = @libexecdir@ localedir = @localedir@ localstatedir = @localstatedir@ -lt_ECHO = @lt_ECHO@ mandir = @mandir@ mkdir_p = @mkdir_p@ oldincludedir = @oldincludedir@ @@ -358,6 +357,7 @@ H5CC_PP = $(bindir)/h5pcc H5FC = $(bindir)/h5fc H5FC_PP = $(bindir)/h5pfc H5CPP = $(bindir)/h5c++ +ACLOCAL_AMFLAGS = "-I m4" # The trace script; this is used on source files from the C library to # insert tracing macros. diff --git a/tools/h5copy/CMakeLists.txt b/tools/h5copy/CMakeLists.txt index b9dad2d..afdd582 100644 --- a/tools/h5copy/CMakeLists.txt +++ b/tools/h5copy/CMakeLists.txt @@ -12,16 +12,7 @@ INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) # -------------------------------------------------------------------- ADD_EXECUTABLE (h5copy ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/h5copy.c) H5_NAMING (h5copy) -IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (h5copy - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) -ENDIF (WIN32) +TARGET_WIN_PROPERTIES (h5copy) TARGET_LINK_LIBRARIES (h5copy ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) SET (H5_DEP_EXECUTABLES h5copy) @@ -36,14 +27,7 @@ IF (BUILD_TESTING) IF (HDF5_BUILD_GENERATORS AND NOT BUILD_SHARED_LIBS) ADD_EXECUTABLE (h5copygentest ${HDF5_TOOLS_H5COPY_SOURCE_DIR}/h5copygentest.c) H5_NAMING (h5copygentest) - IF (WIN32) - IF (MSVC) - SET_TARGET_PROPERTIES (h5copygentest - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (MSVC) - ENDIF (WIN32) + TARGET_WIN_PROPERTIES (h5copygentest) TARGET_LINK_LIBRARIES (h5copygentest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) #ADD_TEST (NAME h5copygentest COMMAND $<TARGET_FILE:h5copygentest>) diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in index 74a01ac..9e382d1 100644 --- a/tools/h5copy/Makefile.in +++ b/tools/h5copy/Makefile.in @@ -301,7 +301,6 @@ libdir = @libdir@ libexecdir = @libexecdir@ localedir = @localedir@ localstatedir = @localstatedir@ -lt_ECHO = @lt_ECHO@ mandir = @mandir@ mkdir_p = @mkdir_p@ oldincludedir = @oldincludedir@ @@ -350,6 +349,7 @@ H5CC_PP = $(bindir)/h5pcc H5FC = $(bindir)/h5fc H5FC_PP = $(bindir)/h5pfc H5CPP = $(bindir)/h5c++ +ACLOCAL_AMFLAGS = "-I m4" # The trace script; this is used on source files from the C library to # insert tracing macros. diff --git a/tools/h5copy/h5copy.c b/tools/h5copy/h5copy.c index d850f85..eb16754 100644 --- a/tools/h5copy/h5copy.c +++ b/tools/h5copy/h5copy.c @@ -416,7 +416,7 @@ main (int argc, const char *argv[]) if(verbose) linkinfo.opt.msg_mode = 1; - li_ret = H5tools_get_link_info(fid_src, oname_src, &linkinfo, 1); + li_ret = H5tools_get_symlink_info(fid_src, oname_src, &linkinfo, 1); if (li_ret == 0) /* dangling link */ { if(H5Lcopy(fid_src, oname_src, diff --git a/tools/h5copy/testh5copy.sh b/tools/h5copy/testh5copy.sh index 029caf9..5ddb83e 100644 --- a/tools/h5copy/testh5copy.sh +++ b/tools/h5copy/testh5copy.sh @@ -294,17 +294,17 @@ COPY_OBJECTS() TOOLTEST -i $TESTFILE -o $FILEOUT -v -s /grp_dsets/simple -d /grp_dsets/simple_group echo "Test copying & renaming group" - TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -v -s grp_dsets -d grp_rename + TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets -d grp_rename echo "Test copying 'full' group hierarchy into group in destination file" - TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -v -s grp_dsets -d /grp_rename/grp_dsets + TOOLTEST -i $TESTFILE -o $FILEOUT -v -s grp_dsets -d /grp_rename/grp_dsets echo "Test copying objects into group hier. that doesn't exist yet in destination file" TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s simple -d /A/B1/simple TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s simple -d /A/B2/simple2 TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_dsets/simple -d /C/D/simple - TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -vp -s /grp_dsets -d /E/F/grp_dsets - TOOLTEST_FAIL -i $TESTFILE -o $FILEOUT -vp -s /grp_nested -d /G/H/grp_nested + TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_dsets -d /E/F/grp_dsets + TOOLTEST -i $TESTFILE -o $FILEOUT -vp -s /grp_nested -d /G/H/grp_nested # Verify that the file created above is correct H5LSTEST $FILEOUT diff --git a/tools/h5diff/CMakeLists.txt b/tools/h5diff/CMakeLists.txt index 1342cd2..924c4ec 100644 --- a/tools/h5diff/CMakeLists.txt +++ b/tools/h5diff/CMakeLists.txt @@ -15,16 +15,7 @@ ADD_EXECUTABLE (h5diff ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/h5diff_main.c ) H5_NAMING (h5diff) -IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (h5diff - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) -ENDIF (WIN32) +TARGET_WIN_PROPERTIES (h5diff) TARGET_LINK_LIBRARIES (h5diff ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) SET (H5_DEP_EXECUTABLES h5diff) @@ -42,14 +33,7 @@ IF (BUILD_TESTING) IF (HDF5_BUILD_GENERATORS AND NOT BUILD_SHARED_LIBS) ADD_EXECUTABLE (h5diffgentest ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/h5diffgentest.c) H5_NAMING (h5diffgentest) - IF (WIN32) - IF (MSVC) - SET_TARGET_PROPERTIES (h5diffgentest - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (MSVC) - ENDIF (WIN32) + TARGET_WIN_PROPERTIES (h5diffgentest) TARGET_LINK_LIBRARIES (h5diffgentest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) #ADD_TEST (NAME h5diffgentest COMMAND $<TARGET_FILE:h5diffgentest>) @@ -130,6 +114,10 @@ IF (BUILD_TESTING) h5diff_457.txt h5diff_458.txt h5diff_459.txt + h5diff_480.txt + h5diff_481.txt + h5diff_482.txt + h5diff_483.txt h5diff_50.txt h5diff_51.txt h5diff_52.txt @@ -139,7 +127,21 @@ IF (BUILD_TESTING) h5diff_56.txt h5diff_57.txt h5diff_58.txt + h5diff_500.txt + h5diff_501.txt + h5diff_503.txt + h5diff_504.txt + h5diff_505.txt + h5diff_506.txt + h5diff_507.txt + h5diff_508.txt + h5diff_509.txt + h5diff_510.txt + h5diff_512.txt + h5diff_513.txt + h5diff_514.txt h5diff_600.txt + h5diff_601.txt h5diff_603.txt h5diff_604.txt h5diff_605.txt @@ -190,6 +192,16 @@ IF (BUILD_TESTING) h5diff_ext2softlink_trg.h5 h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 + h5diff_grp_recurse1.h5 + h5diff_grp_recurse2.h5 + h5diff_grp_recurse_ext1.h5 + h5diff_grp_recurse_ext2-1.h5 + h5diff_grp_recurse_ext2-2.h5 + h5diff_grp_recurse_ext2-3.h5 + h5diff_exclude1-1.h5 + h5diff_exclude1-2.h5 + h5diff_exclude2-1.h5 + h5diff_exclude2-2.h5 ) FOREACH (txt_file ${HDF5_REFERENCE_FILES}) @@ -294,6 +306,20 @@ SET (FILE17 h5diff_ext2softlink_src.h5) SET (FILE18 h5diff_ext2softlink_trg.h5) SET (DANGLE_LINK_FILE1 h5diff_danglelinks1.h5) SET (DANGLE_LINK_FILE2 h5diff_danglelinks2.h5) +SET (GRP_RECURSE_FILE1 h5diff_grp_recurse1.h5) +SET (GRP_RECURSE_FILE2 h5diff_grp_recurse2.h5) +# group recursive - same structure via external links through files +SET (GRP_RECURSE1_EXT h5diff_grp_recurse_ext1.h5) +SET (GRP_RECURSE2_EXT1 h5diff_grp_recurse_ext2-1.h5) +SET (GRP_RECURSE2_EXT2 h5diff_grp_recurse_ext2-2.h5) +SET (GRP_RECURSE2_EXT3 h5diff_grp_recurse_ext2-3.h5) +# same structure, same obj name with different value +SET (EXCLUDE_FILE1_1 h5diff_exclude1-1.h5) +SET (EXCLUDE_FILE1_2 h5diff_exclude1-2.h5) +# different structure and obj names +SET (EXCLUDE_FILE2_1 h5diff_exclude2-1.h5) +SET (EXCLUDE_FILE2_2 h5diff_exclude2-2.h5) + # ############################################################################ # # Common usage @@ -418,6 +444,9 @@ ADD_H5_TEST (h5diff_58 1 -v ${FILE7} ${FILE8} refreg) # 6.0: Check if the command line number of arguments is less than 3 ADD_H5_TEST (h5diff_600 1 ${FILE1}) +# 6.1: Check if non-exist object name is specified +ADD_H5_TEST (h5diff_601 2 ${FILE1} ${FILE1} nono_obj) + # ############################################################################## # # -d @@ -675,6 +704,75 @@ ADD_H5_TEST (h5diff_458 2 --follow-symlinks -v --no-dangling-links ${FILE15} $ # dangling link found for ext links (obj to obj). Both dangle links ADD_H5_TEST (h5diff_459 2 --follow-symlinks -v --no-dangling-links ${FILE15} ${FILE15} /ext_link_noexist1 /ext_link_noexist2) + +# ############################################################################## +# # test for group diff recursivly +# ############################################################################## +# root +ADD_H5_TEST (h5diff_500 -v ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} / /) +ADD_H5_TEST (h5diff_501 -v --follow-symlinks ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} / /) + +# root vs group +ADD_H5_TEST (h5diff_502 -v ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} / /grp1/grp2/grp3) + +# group vs group (same name and structure) +ADD_H5_TEST (h5diff_503 -v ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} /grp1 /grp1) + +# group vs group (different name and structure) +ADD_H5_TEST (h5diff_504 -v ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} /grp1/grp2 /grp1/grp2/grp3) + +# groups vs soft-link +ADD_H5_TEST (h5diff_505 -v ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} /grp1 /slink_grp1) +ADD_H5_TEST (h5diff_506 -v --follow-symlinks ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} /grp1/grp2 /slink_grp2) + +# groups vs ext-link +ADD_H5_TEST (h5diff_507 -v ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} /grp1 /elink_grp1) +ADD_H5_TEST (h5diff_508 -v --follow-symlinks ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} /grp1 /elink_grp1) + +# soft-link vs ext-link +ADD_H5_TEST (h5diff_509 -v ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} /slink_grp1 /elink_grp1) +ADD_H5_TEST (h5diff_510 -v --follow-symlinks ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} /slink_grp1 /elink_grp1) + +# circled ext links +ADD_H5_TEST (h5diff_511 -v ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} /grp10 /grp11) +ADD_H5_TEST (h5diff_512 -v --follow-symlinks ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} /grp10 /grp11) + +# circled soft2ext-link vs soft2ext-link +ADD_H5_TEST (h5diff_513 -v ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} /slink_grp10 /slink_grp11) +ADD_H5_TEST (h5diff_514 -v --follow-symlinks ${GRP_RECURSE_FILE1} ${GRP_RECURSE_FILE2} /slink_grp10 /slink_grp11) + +############################################################################### +# Test for group recursive diff via multi-linked external links +# With follow-symlinks, file $GRP_RECURSE1_EXT and $GRP_RECURSE2_EXT1 should +# be same with the external links. +############################################################################### +# file vs file +ADD_H5_TEST (h5diff_515 -v ${GRP_RECURSE1_EXT} ${GRP_RECURSE2_EXT1}) +ADD_H5_TEST (h5diff_516 -v --follow-symlinks ${GRP_RECURSE1_EXT} ${GRP_RECURSE2_EXT1}) +# group vs group +ADD_H5_TEST (h5diff_517 -v ${GRP_RECURSE1_EXT} ${GRP_RECURSE2_EXT1} /g1) +ADD_H5_TEST (h5diff_518 -v --follow-symlinks ${GRP_RECURSE1_EXT} ${GRP_RECURSE2_EXT1} /g1) + + +# ############################################################################## +# # Exclude path (--exclude-path) +# ############################################################################## +# +# Same structure, same names and different value. +# +# Exclude the object with different value. Expect return - same +ADD_H5_TEST (h5diff_480 0 -v --exclude-path /group1/dset3 ${EXCLUDE_FILE1_1} ${EXCLUDE_FILE1_2}) +# Verify different by not excluding. Expect return - diff +ADD_H5_TEST (h5diff_481 1 -v ${EXCLUDE_FILE1_1} ${EXCLUDE_FILE1_2}) + +# +# Different structure, different names. +# +# Exclude all the different objects. Expect return - same +ADD_H5_TEST (h5diff_482 0 -v --exclude-path "/group1" --exclude-path "/dset1" ${EXCLUDE_FILE2_1} ${EXCLUDE_FILE2_2}) +# Exclude only some different objects. Expect return - diff +ADD_H5_TEST (h5diff_483 1 -v --exclude-path "/group1" ${EXCLUDE_FILE2_1} ${EXCLUDE_FILE2_2}) + ENDIF (BUILD_TESTING) diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in index 872e70e..ce3acd9 100644 --- a/tools/h5diff/Makefile.in +++ b/tools/h5diff/Makefile.in @@ -308,7 +308,6 @@ libdir = @libdir@ libexecdir = @libexecdir@ localedir = @localedir@ localstatedir = @localstatedir@ -lt_ECHO = @lt_ECHO@ mandir = @mandir@ mkdir_p = @mkdir_p@ oldincludedir = @oldincludedir@ @@ -357,6 +356,7 @@ H5CC_PP = $(bindir)/h5pcc H5FC = $(bindir)/h5fc H5FC_PP = $(bindir)/h5pfc H5CPP = $(bindir)/h5c++ +ACLOCAL_AMFLAGS = "-I m4" # The trace script; this is used on source files from the C library to # insert tracing macros. diff --git a/tools/h5diff/h5diff_common.c b/tools/h5diff/h5diff_common.c index 9b6037e..a678b2f 100644 --- a/tools/h5diff/h5diff_common.c +++ b/tools/h5diff/h5diff_common.c @@ -42,6 +42,7 @@ static struct long_options l_opts[] = { { "use-system-epsilon", no_arg, 'e' }, { "follow-symlinks", no_arg, 'l' }, { "no-dangling-links", no_arg, 'x' }, + { "exclude-path", require_arg, 'E' }, { NULL, 0, '\0' } }; @@ -64,6 +65,7 @@ void parse_command_line(int argc, { int opt; + struct exclude_path_list *exclude_head, *exclude_prev, *exclude_node; /* process the command-line */ memset(options, 0, sizeof (diff_opt_t)); @@ -74,6 +76,9 @@ void parse_command_line(int argc, /* NaNs are handled by default */ options->do_nans = 1; + /* init for exclude-path option */ + exclude_head = NULL; + /* parse command line options */ while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) { @@ -104,6 +109,35 @@ void parse_command_line(int argc, case 'x': options->no_dangle_links = 1; break; + case 'E': + options->exclude_path = 1; + + /* create linked list of excluding objects */ + if( (exclude_node = (struct exclude_path_list*) malloc(sizeof(struct exclude_path_list))) == NULL) + { + printf("Error: lack of memory!\n"); + h5diff_exit(EXIT_FAILURE); + } + + /* init */ + exclude_node->obj_path = opt_arg; + exclude_node->obj_type = H5TRAV_TYPE_UNKNOWN; + exclude_prev = exclude_head; + + if (NULL == exclude_head) + { + exclude_head = exclude_node; + exclude_head->next = NULL; + } + else + { + while(NULL != exclude_prev->next) + exclude_prev=exclude_prev->next; + + exclude_node->next = NULL; + exclude_prev->next = exclude_node; + } + break; case 'd': options->d=1; @@ -163,6 +197,10 @@ void parse_command_line(int argc, } } + /* if exclude-path option is used, keep the exclude path list */ + if (options->exclude_path) + options->exclude = exclude_head; + /* if use system epsilon, unset -p and -d option */ if (options->use_system_epsilon) options->d = options->p = 0; @@ -351,7 +389,7 @@ check_d_input( const char *str ) void usage(void) { - printf("usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] \n"); + printf("usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] \n"); printf(" file1 File name of the first HDF5 file\n"); printf(" file2 File name of the second HDF5 file\n"); printf(" [obj1] Name of an HDF5 object, in absolute path\n"); @@ -425,18 +463,29 @@ void usage(void) printf("\n"); - printf(" Compare criteria\n"); - printf(" If no objects [obj1[obj2]] are specified, h5diff only compares objects\n"); - printf(" with the same absolute path in both files\n"); + printf(" File comparison:\n"); + printf(" If no objects [obj1[ obj2]] are specified, the h5diff comparison proceeds as\n"); + printf(" a comparison of the two files' root groups. That is, h5diff first compares\n"); + printf(" the names of root group members, generates a report of root group objects\n"); + printf(" that appear in only one file or in both files, and recursively compares\n"); + printf(" common objects.\n"); printf("\n"); - printf(" The compare criteria is:\n"); - printf(" 1) datasets: numerical array differences\n"); - printf(" 2) groups: name string difference\n"); - printf(" 3) datatypes: the return value of H5Tequal\n"); - printf(" 4) links: name string difference of the linked value as default\n"); - printf(" (refer to --follow-symlinks option).\n"); + printf(" Object comparison:\n"); + printf(" 1) Groups \n"); + printf(" First compares the names of member objects (relative path, from the\n"); + printf(" specified group) and generates a report of objects that appear in only\n"); + printf(" one group or in both groups. Common objects are then compared recursively.\n"); + printf(" 2) Datasets \n"); + printf(" Array rank and dimensions, datatypes, and data values are compared.\n"); + printf(" 3) Datatypes \n"); + printf(" The comparison is based on the return value of H5Tequal.\n"); + printf(" 4) Symbolic links \n"); + printf(" The paths to the target objects are compared.\n"); + printf(" (The option --follow-symlinks overrides the default behavior when\n"); + printf(" symbolic links are compared.).\n"); printf("\n"); + printf(" Exit code:\n"); printf(" 0 if no differences, 1 if differences found, 2 if error\n"); printf("\n"); diff --git a/tools/h5diff/h5diffgentest.c b/tools/h5diff/h5diffgentest.c index 6e9b092..2ba0c7f 100644 --- a/tools/h5diff/h5diffgentest.c +++ b/tools/h5diff/h5diffgentest.c @@ -57,6 +57,19 @@ #define FILE20 "h5diff_dset_idx2.h5" #define DANGLE_LINK_FILE1 "h5diff_danglelinks1.h5" #define DANGLE_LINK_FILE2 "h5diff_danglelinks2.h5" +#define GRP_RECURSE_FILE1 "h5diff_grp_recurse1.h5" +#define GRP_RECURSE_FILE2 "h5diff_grp_recurse2.h5" +/* same structure via external links through files */ +#define GRP_RECURSE1_EXT "h5diff_grp_recurse_ext1.h5" +#define GRP_RECURSE2_EXT1 "h5diff_grp_recurse_ext2-1.h5" +#define GRP_RECURSE2_EXT2 "h5diff_grp_recurse_ext2-2.h5" +#define GRP_RECURSE2_EXT3 "h5diff_grp_recurse_ext2-3.h5" +/* same structure, same obj name with different value */ +#define EXCLUDE_FILE1_1 "h5diff_exclude1-1.h5" +#define EXCLUDE_FILE1_2 "h5diff_exclude1-2.h5" +/* different structure and obj names */ +#define EXCLUDE_FILE2_1 "h5diff_exclude2-1.h5" +#define EXCLUDE_FILE2_2 "h5diff_exclude2-2.h5" #define UIMAX 4294967295u /*Maximum value for a variable of type unsigned int */ #define STR_SIZE 3 @@ -101,6 +114,10 @@ static int test_linked_softlinks(const char *fname1); static int test_external_links(const char *fname1, const char *fname2); static int test_ext2soft_links(const char *fname1, const char *fname2); static int test_dangle_links(const char *fname1, const char *fname2); +static int test_group_recurse(const char *fname1, const char *fname2); +static int test_group_recurse2(); +static int test_exclude_obj1(const char *fname1, const char *fname2); +static int test_exclude_obj2(const char *fname1, const char *fname2); /* called by test_attributes() and test_datasets() */ static void write_attr_in(hid_t loc_id,const char* dset_name,hid_t fid,int make_diffs); @@ -160,6 +177,12 @@ int main(void) test_dangle_links(DANGLE_LINK_FILE1, DANGLE_LINK_FILE2); + test_group_recurse(GRP_RECURSE_FILE1, GRP_RECURSE_FILE2); + test_group_recurse2(); + + test_exclude_obj1(EXCLUDE_FILE1_1, EXCLUDE_FILE1_2); + test_exclude_obj2(EXCLUDE_FILE2_1, EXCLUDE_FILE2_2); + return 0; } @@ -1930,6 +1953,1073 @@ out: } /*------------------------------------------------------------------------- +* +* Purpose: For testing comparing group member objects recursively +* +* Programmer: Jonathan Kim (Aug 19, 2010) +* +*-------------------------------------------------------------------------*/ +static int test_group_recurse(const char *fname1, const char *fname2) +{ + hid_t fid1=0; + hid_t fid2=0; + hid_t gid1_f1=0, gid2_f1=0, gid3_f1=0, gid10_f1=0; + hid_t gid1_f2=0, gid2_f2=0, gid3_f2=0, gid11_f2=0; + hsize_t dims2[2] = {2,4}; + int data1[4][2] = {{0,1},{0,1},{1,0},{1,0}}; + int data2[4][2] = {{0,2},{0,2},{2,0},{2,0}}; + int data3[4][2] = {{0,3},{0,3},{3,0},{3,0}}; + herr_t status = SUCCEED; + + /*----------------------------------------------------------------------- + * Create file(s) + *------------------------------------------------------------------------*/ + fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid1 < 0) + { + fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); + status = FAIL; + goto out; + } + + fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid2 < 0) + { + fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2); + status = FAIL; + goto out; + } + + /*----------------------------------------------------------------------- + * Groups + *------------------------------------------------------------------------*/ + /* file1 */ + gid1_f1 = H5Gcreate2(fid1, "/grp1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (gid1_f1 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); + status = FAIL; + goto out; + } + + gid2_f1 = H5Gcreate2(fid1, "/grp1/grp2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (gid2_f1 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); + status = FAIL; + goto out; + } + + gid3_f1 = H5Gcreate2(fid1, "/grp1/grp2/grp3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (gid3_f1 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); + status = FAIL; + goto out; + } + + gid10_f1 = H5Gcreate2(fid1, "/grp10", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (gid10_f1 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); + status = FAIL; + goto out; + } + + /* file2 */ + gid1_f2 = H5Gcreate2(fid2, "/grp1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (gid1_f2 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); + status = FAIL; + goto out; + } + + gid2_f2 = H5Gcreate2(fid2, "/grp1/grp2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (gid2_f2 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); + status = FAIL; + goto out; + } + + gid3_f2 = H5Gcreate2(fid2, "/grp1/grp2/grp3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (gid3_f2 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); + status = FAIL; + goto out; + } + + gid11_f2 = H5Gcreate2(fid2, "/grp11", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (gid11_f2 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); + status = FAIL; + goto out; + } + + /*----------------------------------------------------------------------- + * Datasets under root + *------------------------------------------------------------------------*/ + /* file1 */ + status = write_dset(fid1,2,dims2,"dset1",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + + status = write_dset(fid1,2,dims2,"dset2",H5T_NATIVE_INT,data2); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + + status = write_dset(fid1,2,dims2,"dset3",H5T_NATIVE_INT,data3); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + + /* file2 */ + status = write_dset(fid2,2,dims2,"dset1",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + + status = write_dset(fid2,2,dims2,"dset2",H5T_NATIVE_INT,data2); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + + status = write_dset(fid2,2,dims2,"dset3",H5T_NATIVE_INT,data3); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + + /*----------------------------------------------------------------------- + * Datasets under group + *------------------------------------------------------------------------*/ + /* file1 */ + status = write_dset(gid1_f1,2,dims2,"dset1",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + + status = write_dset(gid2_f1,2,dims2,"dset1",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + status = write_dset(gid2_f1,2,dims2,"dset2",H5T_NATIVE_INT,data2); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + + status = write_dset(gid3_f1,2,dims2,"dset1",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + status = write_dset(gid3_f1,2,dims2,"dset2",H5T_NATIVE_INT,data2); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + + status = write_dset(gid3_f1,2,dims2,"dset3",H5T_NATIVE_INT,data3); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + + status = write_dset(gid10_f1,2,dims2,"dset4",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + + status = write_dset(gid10_f1,2,dims2,"dset5",H5T_NATIVE_INT,data3); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + + /* file2 */ + status = write_dset(gid1_f2,2,dims2,"dset1",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + + status = write_dset(gid2_f2,2,dims2,"dset1",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + status = write_dset(gid2_f2,2,dims2,"dset2",H5T_NATIVE_INT,data2); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + + status = write_dset(gid3_f2,2,dims2,"dset1",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + status = write_dset(gid3_f2,2,dims2,"dset2",H5T_NATIVE_INT,data2); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + + status = write_dset(gid3_f2,2,dims2,"dset3",H5T_NATIVE_INT,data3); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + + status = write_dset(gid11_f2,2,dims2,"dset4",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + + status = write_dset(gid11_f2,2,dims2,"dset5",H5T_NATIVE_INT,data2); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + + + /*----------------------------------------------------------------------- + * Soft Links + *------------------------------------------------------------------------*/ + /* file 1 */ + status = H5Lcreate_soft("/grp1", fid1, "slink_grp1", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); + status = FAIL; + goto out; + } + + status = H5Lcreate_soft("/grp1/grp2", fid1, "slink_grp2", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); + status = FAIL; + goto out; + } + + status = H5Lcreate_soft("/grp1/grp2/grp3", fid1, "slink_grp3", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); + status = FAIL; + goto out; + } + + status = H5Lcreate_soft("/grp10", fid1, "slink_grp10", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname1); + status = FAIL; + goto out; + } + + /* file 2 */ + status = H5Lcreate_soft("/grp1", fid2, "slink_grp1", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2); + status = FAIL; + goto out; + } + + status = H5Lcreate_soft("/grp1/grp2", fid2, "slink_grp2", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2); + status = FAIL; + goto out; + } + + status = H5Lcreate_soft("/grp1/grp2/grp3", fid2, "slink_grp3", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2); + status = FAIL; + goto out; + } + + status = H5Lcreate_soft("/grp11", fid2, "slink_grp11", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", fname2); + status = FAIL; + goto out; + } + + /*----------------------------------------------------------------------- + * External Links + *------------------------------------------------------------------------*/ + /* file1 */ + status = H5Lcreate_external(fname2, "/grp1", fid1, "elink_grp1", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); + status = FAIL; + goto out; + } + + status = H5Lcreate_external(fname2, "/grp1/grp2", fid1, "elink_grp2", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); + status = FAIL; + goto out; + } + + status = H5Lcreate_external(fname2, "/grp1/grp2/grp3", fid1, "elink_grp3", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); + status = FAIL; + goto out; + } + + /* file2 */ + status = H5Lcreate_external(fname1, "/grp1", fid2, "elink_grp1", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2); + status = FAIL; + goto out; + } + + status = H5Lcreate_external(fname1, "/grp1/grp2", fid2, "elink_grp2", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2); + status = FAIL; + goto out; + } + + status = H5Lcreate_external(fname1, "/grp1/grp2/grp3", fid2, "elink_grp3", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2); + status = FAIL; + goto out; + } + + /*------------------------------ + * external circle route test + * file1/grp11 <-> file2/grp10 via elink_grp_circle link + */ + /* file1 */ + status = H5Lcreate_external(fname2, "/grp11", gid10_f1, "elink_grp_circle", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname1); + status = FAIL; + goto out; + } + /* file2 */ + status = H5Lcreate_external(fname1, "/grp10", gid11_f2, "elink_grp_circle", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", fname2); + status = FAIL; + goto out; + } + + +out: + /*----------------------------------------------------------------------- + * Close + *-----------------------------------------------------------------------*/ + if(fid1) + H5Fclose(fid1); + if(fid2) + H5Fclose(fid2); + if(gid1_f1) + H5Gclose(gid1_f1); + if(gid2_f1) + H5Gclose(gid2_f1); + if(gid3_f1) + H5Gclose(gid3_f1); + if(gid1_f2) + H5Gclose(gid1_f2); + if(gid2_f2) + H5Gclose(gid2_f2); + if(gid3_f2) + H5Gclose(gid3_f2); + + return status; +} + +/*------------------------------------------------------------------------- +* +* Purpose: +* For testing comparing group member objects recursively via multiple +* linked external links +* +* Programmer: Jonathan Kim (Sep 16, 2010) +* +*-------------------------------------------------------------------------*/ +#define GRP_R_DSETNAME1 "dset1" +#define GRP_R_DSETNAME2 "dset2" +static int test_group_recurse2() +{ + hid_t fileid1; + hid_t grp1=0, grp2; + hid_t grp3=0; + hid_t grp4=0; + hid_t tid; + hid_t dset1, dset2; + hid_t datatype, dataspace; /* handles */ + hid_t fileid2; + hid_t fileid3; + hid_t fileid4; + hid_t fileid4_1; + hsize_t dimsf[2]; /* dataset dimensions */ + herr_t status=0; + int data1[4][2] = {{0,0},{1,1},{2,2},{3,3}}; + int data2[4][2] = {{0,0},{0,1},{0,2},{3,3}}; + int i, j; + + /*----------------------------------------------------------------------- + * FILE 1 + *------------------------------------------------------------------------*/ + /* + * Create a new file using H5F_ACC_TRUNC access, + * default file creation properties, and default file + * access properties. + */ + fileid1 = H5Fcreate(GRP_RECURSE1_EXT, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + + /*----------------------------------------------------------------------- + * Groups + *------------------------------------------------------------------------*/ + grp1 = H5Gcreate2(fileid1, "/g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (grp1 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE1_EXT); + status = FAIL; + goto out; + } + + grp2 = H5Gcreate2(grp1, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (grp2 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE1_EXT); + status = FAIL; + goto out; + } + + grp3 = H5Gcreate2(grp2, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (grp3 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE1_EXT); + status = FAIL; + goto out; + } + + grp4 = H5Gcreate2(grp3, "g4", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (grp4 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE1_EXT); + status = FAIL; + goto out; + } + + + /*----------------------------------------------------------------------- + * Datasets + *------------------------------------------------------------------------*/ + /* + * Describe the size of the array and create the data space for fixed + * size dataset. + */ + dimsf[0] = 4; + dimsf[1] = 2; + dataspace = H5Screate_simple(2, dimsf, NULL); + + /* + * Define datatype for the data in the file. + * We will store little endian INT numbers. + */ + datatype = H5Tcopy(H5T_NATIVE_INT); + status = H5Tset_order(datatype, H5T_ORDER_LE); + + /*--------------- + * dset1 + */ + /* + * Create a new dataset within the file using defined dataspace and + * datatype and default dataset creation properties. + */ + dset1 = H5Dcreate2(fileid1, GRP_R_DSETNAME1, datatype, dataspace, + H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + /* + * Write the data to the dataset using default transfer properties. + */ + status = H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data1); + H5Dclose(dset1); + + /*--------------- + * dset1 + */ + /* + * Create a new dataset within the file using defined dataspace and + * datatype and default dataset creation properties. + */ + dset1 = H5Dcreate2(grp3, GRP_R_DSETNAME1, datatype, dataspace, + H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + /* + * Write the data to the dataset using default transfer properties. + */ + status = H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data1); + + /*--------------- + * dset2 + */ + /* + * Create a new dataset within the fileid1 using defined dataspace and + * datatype and default dataset creation properties. + */ + dset2 = H5Dcreate2(grp4, GRP_R_DSETNAME2, datatype, dataspace, + H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + /* + * Write the data to the dataset using default transfer properties. + */ + status = H5Dwrite(dset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data2); + + /*----------------------------------------------------------------------- + * Soft links + *------------------------------------------------------------------------*/ + /* + * under '/' root + */ + /* link to dset1 */ + status = H5Lcreate_soft(GRP_R_DSETNAME1, fileid1, "soft_dset1", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", GRP_RECURSE1_EXT); + status = FAIL; + goto out; + } + + H5Dclose(dset1); + H5Dclose(dset2); + H5Gclose(grp1); + H5Gclose(grp2); + H5Gclose(grp3); + H5Gclose(grp4); + + /*----------------------------------------------------------------------- + * FILE 2-3 + *------------------------------------------------------------------------*/ + + /* crate target file */ + fileid4 = H5Fcreate(GRP_RECURSE2_EXT3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + + /*----------------------------------------------- + * Groups + */ + grp4 = H5Gcreate2(fileid4, "/g4", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (grp4 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE2_EXT3); + status = FAIL; + goto out; + } + + /*--------------- + * dset2 + */ + /* + * Create a new dataset within the fileid1 using defined dataspace and + * datatype and default dataset creation properties. + */ + dset2 = H5Dcreate2(grp4, GRP_R_DSETNAME2, datatype, dataspace, + H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + /* + * Write the data to the dataset using default transfer properties. + */ + status = H5Dwrite(dset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data2); + + H5Gclose(grp4); + H5Dclose(dset2); + + + /*----------------------------------------------------------------------- + * FILE 2-2 + *------------------------------------------------------------------------*/ + + /* crate target file */ + fileid3 = H5Fcreate(GRP_RECURSE2_EXT2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + + /*----------------------------------------------- + * Groups + */ + grp2 = H5Gcreate2(fileid3, "g2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (grp2 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE2_EXT2); + status = FAIL; + goto out; + } + + grp3 = H5Gcreate2(grp2, "g3", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (grp3 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE2_EXT2); + status = FAIL; + goto out; + } + + /*--------------- + * dset1 + */ + /* + * Create a new dataset within the fileid1 using defined dataspace and + * datatype and default dataset creation properties. + */ + dset1 = H5Dcreate2(grp3, GRP_R_DSETNAME1, datatype, dataspace, + H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + /* + * Write the data to the dataset using default transfer properties. + */ + status = H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data1); + + /*----------------------------------------------- + * extlink to $GRP_RECURSE2_EXT3/g4 + */ + status = H5Lcreate_external(GRP_RECURSE2_EXT3, "/g4", fileid3, "/g2/g3/g4", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", GRP_RECURSE2_EXT2); + status = FAIL; + goto out; + } + + H5Dclose(dset1); + H5Gclose(grp2); + H5Gclose(grp3); + + /*----------------------------------------------------------------------- + * FILE 2-1 + *------------------------------------------------------------------------*/ + + /* crate target file */ + fileid2 = H5Fcreate(GRP_RECURSE2_EXT1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + + /*----------------------------------------------- + * Groups + */ + grp1 = H5Gcreate2(fileid2, "g1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (grp1 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", GRP_RECURSE1_EXT); + status = FAIL; + goto out; + } + + /*--------------- + * dset1 + */ + dset1 = H5Dcreate2(fileid2, GRP_R_DSETNAME1, datatype, dataspace, + H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + /* + * Write the data to the dataset using default transfer properties. + */ + status = H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data1); + + /*----------------------------------------------------------------------- + * Soft links + *------------------------------------------------------------------------*/ + /* + * under '/' root + */ + /* link to dset1 */ + status = H5Lcreate_soft(GRP_R_DSETNAME1, fileid2, "soft_dset1", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_soft failed.\n", GRP_RECURSE2_EXT1); + status = FAIL; + goto out; + } + + /*----------------------------------------------- + * extlink to $GRP_RECURSE2_EXT2/g2 + */ + status = H5Lcreate_external(GRP_RECURSE2_EXT2, "/g2", fileid2, "/g1/g2", H5P_DEFAULT, H5P_DEFAULT); + if (status < 0) + { + fprintf(stderr, "Error: %s> H5Lcreate_external failed.\n", GRP_RECURSE2_EXT1); + status = FAIL; + goto out; + } + + H5Gclose(grp1); + H5Dclose(dset1); + +out: + /* + * Close/release resources. + */ + H5Sclose(dataspace); + H5Tclose(datatype); + H5Fclose(fileid1); + H5Fclose(fileid2); + H5Fclose(fileid3); + H5Fclose(fileid4); + + return status; +} + + +/*------------------------------------------------------------------------- +* +* Purpose: Create test files for excluding obj. +* Same structure, same obj names +* Test : exclude obj with different value to verify the rest are same +* +* Programmer: Jonathan Kim (July, 21, 2010) +* +*-------------------------------------------------------------------------*/ +static int test_exclude_obj1(const char *fname1, const char *fname2) +{ + hid_t fid1=0; + hid_t fid2=0; + hid_t gid1=0; + hid_t gid2=0; + hsize_t dims2[2] = {2,4}; + int data1[4][2] = {{0,0},{0,0},{0,0},{0,0}}; + int data2[4][2] = {{0,1},{2,3},{1,2},{3,4}}; + herr_t status = SUCCEED; + + /*----------------------------------------------------------------------- + * Create file(s) + *------------------------------------------------------------------------*/ + fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid1 < 0) + { + fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); + status = FAIL; + goto out; + } + + fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid2 < 0) + { + fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2); + status = FAIL; + goto out; + } + + + /*----------------------------------------------------------------------- + * Group + *------------------------------------------------------------------------*/ + /* file1 */ + gid1 = H5Gcreate2(fid1, "group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (gid1 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); + status = FAIL; + goto out; + } + + /* file2 */ + gid2 = H5Gcreate2(fid2, "group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + if (gid2 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); + status = FAIL; + goto out; + } + + + /*----------------------------------------------------------------------- + * Datasets + *------------------------------------------------------------------------*/ + /* file1 */ + status = write_dset(fid1,2,dims2,"dset1",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + + status = write_dset(gid1,2,dims2,"dset2",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + + status = write_dset(gid1,2,dims2,"dset3",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + + + /* file2 */ + status = write_dset(fid2,2,dims2,"dset1",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + + status = write_dset(gid2,2,dims2,"dset2",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + + status = write_dset(gid2,2,dims2,"dset3",H5T_NATIVE_INT,data2); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + + +out: + /*----------------------------------------------------------------------- + * Close + *-----------------------------------------------------------------------*/ + if(fid1) + H5Fclose(fid1); + if(fid2) + H5Fclose(fid2); + if(gid1) + H5Gclose(gid1); + if(gid2) + H5Gclose(gid2); + + return status; +} + +/*------------------------------------------------------------------------- +* +* Purpose: Create test files for excluding obj. +* different structure and name +* Test : exclude different objs to verify the rest are same +* +* Programmer: Jonathan Kim (July, 21, 2010) +* +*-------------------------------------------------------------------------*/ +static int test_exclude_obj2(const char *fname1, const char *fname2) +{ + hid_t fid1=0; + hid_t fid2=0; + hid_t gid1=0; + hid_t gid2=0; + hid_t gid3=0; + hsize_t dims2[2] = {2,4}; + int data1[4][2] = {{0,0},{0,0},{0,0},{0,0}}; + int data2[4][2] = {{0,1},{2,3},{1,2},{3,4}}; + herr_t status = SUCCEED; + + /*----------------------------------------------------------------------- + * Create file(s) + *------------------------------------------------------------------------*/ + fid1 = H5Fcreate (fname1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid1 < 0) + { + fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname1); + status = FAIL; + goto out; + } + + fid2 = H5Fcreate (fname2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if (fid2 < 0) + { + fprintf(stderr, "Error: %s> H5Fcreate failed.\n", fname2); + status = FAIL; + goto out; + } + + + /*----------------------------------------------------------------------- + * Group + *------------------------------------------------------------------------*/ + /* file1 */ + gid1 = H5Gcreate2(fid1, "group10", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + if (gid1 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname1); + status = FAIL; + goto out; + } + + /* file2 */ + gid2 = H5Gcreate2(fid2, "group10", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + if (gid2 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); + status = FAIL; + goto out; + } + + /* subset name from group10 */ + gid3 = H5Gcreate2(fid2, "group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + if (gid3 < 0) + { + fprintf(stderr, "Error: %s> H5Gcreate2 failed.\n", fname2); + status = FAIL; + goto out; + } + + + /*----------------------------------------------------------------------- + * Datasets + *------------------------------------------------------------------------*/ + /* file1 */ + status = write_dset(fid1,2,dims2,"dset10",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + + status = write_dset(fid1,2,dims2,"dset1",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + + status = write_dset(gid1,2,dims2,"dset2",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname1); + status = FAIL; + goto out; + } + + + /* file2 */ + status = write_dset(fid2,2,dims2,"dset10",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + + status = write_dset(gid2,2,dims2,"dset2",H5T_NATIVE_INT,data1); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + + status = write_dset(gid3,2,dims2,"dset3",H5T_NATIVE_INT,data2); + if (status == FAIL) + { + fprintf(stderr, "Error: %s> write_dset failed\n", fname2); + status = FAIL; + goto out; + } + + +out: + /*----------------------------------------------------------------------- + * Close + *-----------------------------------------------------------------------*/ + if(fid1) + H5Fclose(fid1); + if(fid2) + H5Fclose(fid2); + if(gid1) + H5Gclose(gid1); + if(gid2) + H5Gclose(gid2); + if(gid3) + H5Gclose(gid3); + + return status; +} + +/*------------------------------------------------------------------------- * Function: write_attr_in * * Purpose: write attributes in LOC_ID (dataset, group, named datatype) diff --git a/tools/h5diff/ph5diff_main.c b/tools/h5diff/ph5diff_main.c index 531503d..f6b0dba 100644 --- a/tools/h5diff/ph5diff_main.c +++ b/tools/h5diff/ph5diff_main.c @@ -135,7 +135,7 @@ ph5diff_worker(int nID) { struct diff_args args; hid_t file1_id, file2_id; - char filenames[2][1024]; + char filenames[2][MAX_FILENAME]; char out_data[PRINT_DATA_MAX_SIZE] = {0}; struct diffs_found diffs; int i; @@ -144,7 +144,7 @@ ph5diff_worker(int nID) MPI_Comm_rank(MPI_COMM_WORLD, &nID); outBuffOffset = 0; - MPI_Recv(filenames, 1024*2, MPI_CHAR, 0, MPI_ANY_TAG, MPI_COMM_WORLD, &Status); + MPI_Recv(filenames, MAX_FILENAME*2, MPI_CHAR, 0, MPI_ANY_TAG, MPI_COMM_WORLD, &Status); if(Status.MPI_TAG == MPI_TAG_PARALLEL) { /* disable error reporting */ @@ -175,7 +175,7 @@ ph5diff_worker(int nID) /*Recv parameters for diff from manager task */ MPI_Recv(&args, sizeof(args), MPI_BYTE, 0, MPI_TAG_ARGS, MPI_COMM_WORLD, &Status); /*Do the diff */ - diffs.nfound = diff(file1_id, args.name, file2_id, args.name, &(args.options), args.type); + diffs.nfound = diff(file1_id, args.name1, file2_id, args.name2, &(args.options), args.type); diffs.not_cmp = args.options.not_cmp; /*If print buffer has something in it, request print token.*/ diff --git a/tools/h5diff/testfiles/h5diff_10.txt b/tools/h5diff/testfiles/h5diff_10.txt index d3ee9a6..224f9bc 100644 --- a/tools/h5diff/testfiles/h5diff_10.txt +++ b/tools/h5diff/testfiles/h5diff_10.txt @@ -1,4 +1,4 @@ -usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] +usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] file1 File name of the first HDF5 file file2 File name of the second HDF5 file [obj1] Name of an HDF5 object, in absolute path @@ -69,16 +69,26 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] -v Verbose mode: print the above plus a list of objects and warnings -q Quiet mode: do not print output - Compare criteria - If no objects [obj1[obj2]] are specified, h5diff only compares objects - with the same absolute path in both files + File comparison: + If no objects [obj1[ obj2]] are specified, the h5diff comparison proceeds as + a comparison of the two files' root groups. That is, h5diff first compares + the names of root group members, generates a report of root group objects + that appear in only one file or in both files, and recursively compares + common objects. - The compare criteria is: - 1) datasets: numerical array differences - 2) groups: name string difference - 3) datatypes: the return value of H5Tequal - 4) links: name string difference of the linked value as default - (refer to --follow-symlinks option). + Object comparison: + 1) Groups + First compares the names of member objects (relative path, from the + specified group) and generates a report of objects that appear in only + one group or in both groups. Common objects are then compared recursively. + 2) Datasets + Array rank and dimensions, datatypes, and data values are compared. + 3) Datatypes + The comparison is based on the return value of H5Tequal. + 4) Symbolic links + The paths to the target objects are compared. + (The option --follow-symlinks overrides the default behavior when + symbolic links are compared.). Exit code: 0 if no differences, 1 if differences found, 2 if error diff --git a/tools/h5diff/testfiles/h5diff_23.txt b/tools/h5diff/testfiles/h5diff_23.txt index 5a46ea2..bd1cadb 100644 --- a/tools/h5diff/testfiles/h5diff_23.txt +++ b/tools/h5diff/testfiles/h5diff_23.txt @@ -1,3 +1,8 @@ + +group1 group2 +--------------------------------------- + x x + group : </g1> and </g1> 0 differences found EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_26.txt b/tools/h5diff/testfiles/h5diff_26.txt index 8e1fcc3..54a5121 100644 --- a/tools/h5diff/testfiles/h5diff_26.txt +++ b/tools/h5diff/testfiles/h5diff_26.txt @@ -1,3 +1,8 @@ + +group1 group2 +--------------------------------------- + x x + group : </g1> and </g2> -1 differences found -EXIT CODE: 1 +0 differences found +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_400.txt b/tools/h5diff/testfiles/h5diff_400.txt index 97db70d..8b3c03c 100644 --- a/tools/h5diff/testfiles/h5diff_400.txt +++ b/tools/h5diff/testfiles/h5diff_400.txt @@ -3,10 +3,9 @@ file1 file2 --------------------------------------- x x / x x /softlink_dset1_1 - x x /softlink_dset1_2 x x /softlink_dset2 x x /softlink_group1 - x x /softlink_group2 + x x /softlink_group1/dset x x /softlink_noexist x x /target_dset1 x x /target_dset2 @@ -15,25 +14,13 @@ file1 file2 group : </> and </> 0 differences found -link : </softlink_dset1_1> and </softlink_dset1_1> dataset: </softlink_dset1_1> and </softlink_dset1_1> 0 differences found -0 differences found -link : </softlink_dset1_2> and </softlink_dset1_2> -dataset: </softlink_dset1_2> and </softlink_dset1_2> -0 differences found -0 differences found -link : </softlink_dset2> and </softlink_dset2> dataset: </softlink_dset2> and </softlink_dset2> 0 differences found -0 differences found -link : </softlink_group1> and </softlink_group1> group : </softlink_group1> and </softlink_group1> 0 differences found -0 differences found -link : </softlink_group2> and </softlink_group2> -group : </softlink_group2> and </softlink_group2> -0 differences found +dataset: </softlink_group1/dset> and </softlink_group1/dset> 0 differences found dangling link: </softlink_noexist> and </softlink_noexist> 0 differences found diff --git a/tools/h5diff/testfiles/h5diff_404.txt b/tools/h5diff/testfiles/h5diff_404.txt index c9a476d..db317d1 100644 --- a/tools/h5diff/testfiles/h5diff_404.txt +++ b/tools/h5diff/testfiles/h5diff_404.txt @@ -5,27 +5,25 @@ file1 file2 x x /ext_link_dset1 x x /ext_link_dset2 x x /ext_link_grp1 + x x /ext_link_grp1/x_dset x x /ext_link_grp2 + x x /ext_link_grp2/x_dset x x /ext_link_noexist1 x x /ext_link_noexist2 group : </> and </> 0 differences found -external link: </ext_link_dset1> and </ext_link_dset1> dataset: </ext_link_dset1> and </ext_link_dset1> 0 differences found -0 differences found -external link: </ext_link_dset2> and </ext_link_dset2> dataset: </ext_link_dset2> and </ext_link_dset2> 0 differences found -0 differences found -external link: </ext_link_grp1> and </ext_link_grp1> group : </ext_link_grp1> and </ext_link_grp1> 0 differences found +dataset: </ext_link_grp1/x_dset> and </ext_link_grp1/x_dset> 0 differences found -external link: </ext_link_grp2> and </ext_link_grp2> group : </ext_link_grp2> and </ext_link_grp2> 0 differences found +dataset: </ext_link_grp2/x_dset> and </ext_link_grp2/x_dset> 0 differences found dangling link: </ext_link_noexist1> and </ext_link_noexist1> 0 differences found diff --git a/tools/h5diff/testfiles/h5diff_410.txt b/tools/h5diff/testfiles/h5diff_410.txt index b0924f6..6087bb8 100644 --- a/tools/h5diff/testfiles/h5diff_410.txt +++ b/tools/h5diff/testfiles/h5diff_410.txt @@ -23,54 +23,30 @@ file1 file2 group : </> and </> 0 differences found -link : </softlink1_to_dset1> and </softlink1_to_dset1> dataset: </softlink1_to_dset1> and </softlink1_to_dset1> 0 differences found -0 differences found -link : </softlink1_to_slink1> and </softlink1_to_slink1> dataset: </softlink1_to_slink1> and </softlink1_to_slink1> 0 differences found -0 differences found -link : </softlink1_to_slink2> and </softlink1_to_slink2> dataset: </softlink1_to_slink2> and </softlink1_to_slink2> 0 differences found -0 differences found -link : </softlink2_to_dset2> and </softlink2_to_dset2> dataset: </softlink2_to_dset2> and </softlink2_to_dset2> 0 differences found -0 differences found -link : </softlink2_to_slink1> and </softlink2_to_slink1> dataset: </softlink2_to_slink1> and </softlink2_to_slink1> 0 differences found -0 differences found -link : </softlink2_to_slink2> and </softlink2_to_slink2> dataset: </softlink2_to_slink2> and </softlink2_to_slink2> 0 differences found -0 differences found -link : </softlink3_to_group1> and </softlink3_to_group1> group : </softlink3_to_group1> and </softlink3_to_group1> 0 differences found -0 differences found -link : </softlink3_to_slink1> and </softlink3_to_slink1> group : </softlink3_to_slink1> and </softlink3_to_slink1> 0 differences found -0 differences found -link : </softlink3_to_slink2> and </softlink3_to_slink2> group : </softlink3_to_slink2> and </softlink3_to_slink2> 0 differences found -0 differences found -link : </softlink4_to_group2> and </softlink4_to_group2> group : </softlink4_to_group2> and </softlink4_to_group2> 0 differences found -0 differences found -link : </softlink4_to_slink1> and </softlink4_to_slink1> group : </softlink4_to_slink1> and </softlink4_to_slink1> 0 differences found -0 differences found -link : </softlink4_to_slink2> and </softlink4_to_slink2> group : </softlink4_to_slink2> and </softlink4_to_slink2> 0 differences found -0 differences found dataset: </target_dset1> and </target_dset1> 0 differences found dataset: </target_dset2> and </target_dset2> diff --git a/tools/h5diff/testfiles/h5diff_414.txt b/tools/h5diff/testfiles/h5diff_414.txt index e7a991a..a47349e 100644 --- a/tools/h5diff/testfiles/h5diff_414.txt +++ b/tools/h5diff/testfiles/h5diff_414.txt @@ -1,3 +1,9 @@ + +group1 group2 +--------------------------------------- + x x + x /dset + group : </target_group> and </softlink3_to_slink2> -1 differences found +0 differences found EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/h5diff_415.txt b/tools/h5diff/testfiles/h5diff_415.txt index 1e97319..30cc947 100644 --- a/tools/h5diff/testfiles/h5diff_415.txt +++ b/tools/h5diff/testfiles/h5diff_415.txt @@ -1,3 +1,9 @@ + +group1 group2 +--------------------------------------- + x x + x /dset + group : </softlink3_to_slink2> and </target_group> -1 differences found +0 differences found EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/h5diff_416.txt b/tools/h5diff/testfiles/h5diff_416.txt index e4e98b0..551a6c3 100644 --- a/tools/h5diff/testfiles/h5diff_416.txt +++ b/tools/h5diff/testfiles/h5diff_416.txt @@ -1,3 +1,8 @@ + +group1 group2 +--------------------------------------- + x x + group : </softlink3_to_slink2> and </softlink4_to_slink2> -1 differences found -EXIT CODE: 1 +0 differences found +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_453.txt b/tools/h5diff/testfiles/h5diff_453.txt index 9c4d61b..8a5ca52 100644 --- a/tools/h5diff/testfiles/h5diff_453.txt +++ b/tools/h5diff/testfiles/h5diff_453.txt @@ -3,10 +3,9 @@ file1 file2 --------------------------------------- x x / x x /softlink_dset1_1 - x x /softlink_dset1_2 x x /softlink_dset2 x x /softlink_group1 - x x /softlink_group2 + x x /softlink_group1/dset x x /softlink_noexist x x /target_dset1 x x /target_dset2 @@ -15,25 +14,13 @@ file1 file2 group : </> and </> 0 differences found -link : </softlink_dset1_1> and </softlink_dset1_1> dataset: </softlink_dset1_1> and </softlink_dset1_1> 0 differences found -0 differences found -link : </softlink_dset1_2> and </softlink_dset1_2> -dataset: </softlink_dset1_2> and </softlink_dset1_2> -0 differences found -0 differences found -link : </softlink_dset2> and </softlink_dset2> dataset: </softlink_dset2> and </softlink_dset2> 0 differences found -0 differences found -link : </softlink_group1> and </softlink_group1> group : </softlink_group1> and </softlink_group1> 0 differences found -0 differences found -link : </softlink_group2> and </softlink_group2> -group : </softlink_group2> and </softlink_group2> -0 differences found +dataset: </softlink_group1/dset> and </softlink_group1/dset> 0 differences found Warning: </softlink_noexist> is a dangling link. dataset: </target_dset1> and </target_dset1> diff --git a/tools/h5diff/testfiles/h5diff_456.txt b/tools/h5diff/testfiles/h5diff_456.txt index f20e403..9317988 100644 --- a/tools/h5diff/testfiles/h5diff_456.txt +++ b/tools/h5diff/testfiles/h5diff_456.txt @@ -5,27 +5,25 @@ file1 file2 x x /ext_link_dset1 x x /ext_link_dset2 x x /ext_link_grp1 + x x /ext_link_grp1/x_dset x x /ext_link_grp2 + x x /ext_link_grp2/x_dset x x /ext_link_noexist1 x x /ext_link_noexist2 group : </> and </> 0 differences found -external link: </ext_link_dset1> and </ext_link_dset1> dataset: </ext_link_dset1> and </ext_link_dset1> 0 differences found -0 differences found -external link: </ext_link_dset2> and </ext_link_dset2> dataset: </ext_link_dset2> and </ext_link_dset2> 0 differences found -0 differences found -external link: </ext_link_grp1> and </ext_link_grp1> group : </ext_link_grp1> and </ext_link_grp1> 0 differences found +dataset: </ext_link_grp1/x_dset> and </ext_link_grp1/x_dset> 0 differences found -external link: </ext_link_grp2> and </ext_link_grp2> group : </ext_link_grp2> and </ext_link_grp2> 0 differences found +dataset: </ext_link_grp2/x_dset> and </ext_link_grp2/x_dset> 0 differences found Warning: </ext_link_noexist1> is a dangling link. Warning: </ext_link_noexist2> is a dangling link. diff --git a/tools/h5diff/testfiles/h5diff_480.txt b/tools/h5diff/testfiles/h5diff_480.txt new file mode 100644 index 0000000..3e1f900 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_480.txt @@ -0,0 +1,17 @@ + +file1 file2 +--------------------------------------- + x x / + x x /dset1 + x x /group1 + x x /group1/dset2 + +group : </> and </> +0 differences found +dataset: </dset1> and </dset1> +0 differences found +group : </group1> and </group1> +0 differences found +dataset: </group1/dset2> and </group1/dset2> +0 differences found +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_481.txt b/tools/h5diff/testfiles/h5diff_481.txt new file mode 100644 index 0000000..c4f2448 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_481.txt @@ -0,0 +1,30 @@ + +file1 file2 +--------------------------------------- + x x / + x x /dset1 + x x /group1 + x x /group1/dset2 + x x /group1/dset3 + +group : </> and </> +0 differences found +dataset: </dset1> and </dset1> +0 differences found +group : </group1> and </group1> +0 differences found +dataset: </group1/dset2> and </group1/dset2> +0 differences found +dataset: </group1/dset3> and </group1/dset3> +size: [2x4] [2x4] +position dset3 dset3 difference +------------------------------------------------------------ +[ 0 1 ] 0 1 1 +[ 0 2 ] 0 2 2 +[ 0 3 ] 0 3 3 +[ 1 0 ] 0 1 1 +[ 1 1 ] 0 2 2 +[ 1 2 ] 0 3 3 +[ 1 3 ] 0 4 4 +7 differences found +EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/h5diff_482.txt b/tools/h5diff/testfiles/h5diff_482.txt new file mode 100644 index 0000000..5b3c8c1 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_482.txt @@ -0,0 +1,17 @@ + +file1 file2 +--------------------------------------- + x x / + x x /dset10 + x x /group10 + x x /group10/dset2 + +group : </> and </> +0 differences found +dataset: </dset10> and </dset10> +0 differences found +group : </group10> and </group10> +0 differences found +dataset: </group10/dset2> and </group10/dset2> +0 differences found +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_483.txt b/tools/h5diff/testfiles/h5diff_483.txt new file mode 100644 index 0000000..a45e928 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_483.txt @@ -0,0 +1,18 @@ + +file1 file2 +--------------------------------------- + x x / + x /dset1 + x x /dset10 + x x /group10 + x x /group10/dset2 + +group : </> and </> +0 differences found +dataset: </dset10> and </dset10> +0 differences found +group : </group10> and </group10> +0 differences found +dataset: </group10/dset2> and </group10/dset2> +0 differences found +EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/h5diff_500.txt b/tools/h5diff/testfiles/h5diff_500.txt new file mode 100644 index 0000000..7d688d2 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_500.txt @@ -0,0 +1,72 @@ + +file1 file2 +--------------------------------------- + x x / + x x /dset1 + x x /dset2 + x x /dset3 + x x /elink_grp1 + x x /elink_grp2 + x x /elink_grp3 + x x /grp1 + x x /grp1/dset1 + x x /grp1/grp2 + x x /grp1/grp2/dset1 + x x /grp1/grp2/dset2 + x x /grp1/grp2/grp3 + x x /grp1/grp2/grp3/dset1 + x x /grp1/grp2/grp3/dset2 + x x /grp1/grp2/grp3/dset3 + x /grp10 + x /grp10/dset4 + x /grp10/dset5 + x /grp10/elink_grp_circle + x /grp11 + x /grp11/dset4 + x /grp11/dset5 + x /grp11/elink_grp_circle + x x /slink_grp1 + x /slink_grp10 + x /slink_grp11 + x x /slink_grp2 + x x /slink_grp3 + +group : </> and </> +0 differences found +dataset: </dset1> and </dset1> +0 differences found +dataset: </dset2> and </dset2> +0 differences found +dataset: </dset3> and </dset3> +0 differences found +external link: </elink_grp1> and </elink_grp1> +1 differences found +external link: </elink_grp2> and </elink_grp2> +1 differences found +external link: </elink_grp3> and </elink_grp3> +1 differences found +group : </grp1> and </grp1> +0 differences found +dataset: </grp1/dset1> and </grp1/dset1> +0 differences found +group : </grp1/grp2> and </grp1/grp2> +0 differences found +dataset: </grp1/grp2/dset1> and </grp1/grp2/dset1> +0 differences found +dataset: </grp1/grp2/dset2> and </grp1/grp2/dset2> +0 differences found +group : </grp1/grp2/grp3> and </grp1/grp2/grp3> +0 differences found +dataset: </grp1/grp2/grp3/dset1> and </grp1/grp2/grp3/dset1> +0 differences found +dataset: </grp1/grp2/grp3/dset2> and </grp1/grp2/grp3/dset2> +0 differences found +dataset: </grp1/grp2/grp3/dset3> and </grp1/grp2/grp3/dset3> +0 differences found +link : </slink_grp1> and </slink_grp1> +0 differences found +link : </slink_grp2> and </slink_grp2> +0 differences found +link : </slink_grp3> and </slink_grp3> +0 differences found +EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/h5diff_501.txt b/tools/h5diff/testfiles/h5diff_501.txt new file mode 100644 index 0000000..75e91da --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_501.txt @@ -0,0 +1,188 @@ + +file1 file2 +--------------------------------------- + x x / + x x /dset1 + x x /dset2 + x x /dset3 + x x /elink_grp1 + x x /elink_grp1/dset1 + x x /elink_grp1/grp2 + x x /elink_grp1/grp2/dset1 + x x /elink_grp1/grp2/dset2 + x x /elink_grp1/grp2/grp3 + x x /elink_grp1/grp2/grp3/dset1 + x x /elink_grp1/grp2/grp3/dset2 + x x /elink_grp1/grp2/grp3/dset3 + x x /elink_grp2 + x x /elink_grp2/dset1 + x x /elink_grp2/dset2 + x x /elink_grp2/grp3 + x x /elink_grp2/grp3/dset1 + x x /elink_grp2/grp3/dset2 + x x /elink_grp2/grp3/dset3 + x x /elink_grp3 + x x /elink_grp3/dset1 + x x /elink_grp3/dset2 + x x /elink_grp3/dset3 + x x /grp1 + x x /grp1/dset1 + x x /grp1/grp2 + x x /grp1/grp2/dset1 + x x /grp1/grp2/dset2 + x x /grp1/grp2/grp3 + x x /grp1/grp2/grp3/dset1 + x x /grp1/grp2/grp3/dset2 + x x /grp1/grp2/grp3/dset3 + x /grp10 + x /grp10/dset4 + x /grp10/dset5 + x /grp10/elink_grp_circle + x /grp10/elink_grp_circle/dset4 + x /grp10/elink_grp_circle/dset5 + x /grp10/elink_grp_circle/elink_grp_circle + x /grp10/elink_grp_circle/elink_grp_circle/dset4 + x /grp10/elink_grp_circle/elink_grp_circle/dset5 + x /grp11 + x /grp11/dset4 + x /grp11/dset5 + x /grp11/elink_grp_circle + x /grp11/elink_grp_circle/dset4 + x /grp11/elink_grp_circle/dset5 + x /grp11/elink_grp_circle/elink_grp_circle + x /grp11/elink_grp_circle/elink_grp_circle/dset4 + x /grp11/elink_grp_circle/elink_grp_circle/dset5 + x x /slink_grp1 + x x /slink_grp1/dset1 + x x /slink_grp1/grp2 + x x /slink_grp1/grp2/dset1 + x x /slink_grp1/grp2/dset2 + x x /slink_grp1/grp2/grp3 + x x /slink_grp1/grp2/grp3/dset1 + x x /slink_grp1/grp2/grp3/dset2 + x x /slink_grp1/grp2/grp3/dset3 + x /slink_grp10 + x /slink_grp10/dset4 + x /slink_grp10/dset5 + x /slink_grp11 + x /slink_grp11/dset4 + x /slink_grp11/dset5 + x x /slink_grp2 + x x /slink_grp2/dset1 + x x /slink_grp2/dset2 + x x /slink_grp2/grp3 + x x /slink_grp2/grp3/dset1 + x x /slink_grp2/grp3/dset2 + x x /slink_grp2/grp3/dset3 + x x /slink_grp3 + x x /slink_grp3/dset1 + x x /slink_grp3/dset2 + x x /slink_grp3/dset3 + +group : </> and </> +0 differences found +dataset: </dset1> and </dset1> +0 differences found +dataset: </dset2> and </dset2> +0 differences found +dataset: </dset3> and </dset3> +0 differences found +group : </elink_grp1> and </elink_grp1> +0 differences found +dataset: </elink_grp1/dset1> and </elink_grp1/dset1> +0 differences found +group : </elink_grp1/grp2> and </elink_grp1/grp2> +0 differences found +dataset: </elink_grp1/grp2/dset1> and </elink_grp1/grp2/dset1> +0 differences found +dataset: </elink_grp1/grp2/dset2> and </elink_grp1/grp2/dset2> +0 differences found +group : </elink_grp1/grp2/grp3> and </elink_grp1/grp2/grp3> +0 differences found +dataset: </elink_grp1/grp2/grp3/dset1> and </elink_grp1/grp2/grp3/dset1> +0 differences found +dataset: </elink_grp1/grp2/grp3/dset2> and </elink_grp1/grp2/grp3/dset2> +0 differences found +dataset: </elink_grp1/grp2/grp3/dset3> and </elink_grp1/grp2/grp3/dset3> +0 differences found +group : </elink_grp2> and </elink_grp2> +0 differences found +dataset: </elink_grp2/dset1> and </elink_grp2/dset1> +0 differences found +dataset: </elink_grp2/dset2> and </elink_grp2/dset2> +0 differences found +group : </elink_grp2/grp3> and </elink_grp2/grp3> +0 differences found +dataset: </elink_grp2/grp3/dset1> and </elink_grp2/grp3/dset1> +0 differences found +dataset: </elink_grp2/grp3/dset2> and </elink_grp2/grp3/dset2> +0 differences found +dataset: </elink_grp2/grp3/dset3> and </elink_grp2/grp3/dset3> +0 differences found +group : </elink_grp3> and </elink_grp3> +0 differences found +dataset: </elink_grp3/dset1> and </elink_grp3/dset1> +0 differences found +dataset: </elink_grp3/dset2> and </elink_grp3/dset2> +0 differences found +dataset: </elink_grp3/dset3> and </elink_grp3/dset3> +0 differences found +group : </grp1> and </grp1> +0 differences found +dataset: </grp1/dset1> and </grp1/dset1> +0 differences found +group : </grp1/grp2> and </grp1/grp2> +0 differences found +dataset: </grp1/grp2/dset1> and </grp1/grp2/dset1> +0 differences found +dataset: </grp1/grp2/dset2> and </grp1/grp2/dset2> +0 differences found +group : </grp1/grp2/grp3> and </grp1/grp2/grp3> +0 differences found +dataset: </grp1/grp2/grp3/dset1> and </grp1/grp2/grp3/dset1> +0 differences found +dataset: </grp1/grp2/grp3/dset2> and </grp1/grp2/grp3/dset2> +0 differences found +dataset: </grp1/grp2/grp3/dset3> and </grp1/grp2/grp3/dset3> +0 differences found +group : </slink_grp1> and </slink_grp1> +0 differences found +dataset: </slink_grp1/dset1> and </slink_grp1/dset1> +0 differences found +group : </slink_grp1/grp2> and </slink_grp1/grp2> +0 differences found +dataset: </slink_grp1/grp2/dset1> and </slink_grp1/grp2/dset1> +0 differences found +dataset: </slink_grp1/grp2/dset2> and </slink_grp1/grp2/dset2> +0 differences found +group : </slink_grp1/grp2/grp3> and </slink_grp1/grp2/grp3> +0 differences found +dataset: </slink_grp1/grp2/grp3/dset1> and </slink_grp1/grp2/grp3/dset1> +0 differences found +dataset: </slink_grp1/grp2/grp3/dset2> and </slink_grp1/grp2/grp3/dset2> +0 differences found +dataset: </slink_grp1/grp2/grp3/dset3> and </slink_grp1/grp2/grp3/dset3> +0 differences found +group : </slink_grp2> and </slink_grp2> +0 differences found +dataset: </slink_grp2/dset1> and </slink_grp2/dset1> +0 differences found +dataset: </slink_grp2/dset2> and </slink_grp2/dset2> +0 differences found +group : </slink_grp2/grp3> and </slink_grp2/grp3> +0 differences found +dataset: </slink_grp2/grp3/dset1> and </slink_grp2/grp3/dset1> +0 differences found +dataset: </slink_grp2/grp3/dset2> and </slink_grp2/grp3/dset2> +0 differences found +dataset: </slink_grp2/grp3/dset3> and </slink_grp2/grp3/dset3> +0 differences found +group : </slink_grp3> and </slink_grp3> +0 differences found +dataset: </slink_grp3/dset1> and </slink_grp3/dset1> +0 differences found +dataset: </slink_grp3/dset2> and </slink_grp3/dset2> +0 differences found +dataset: </slink_grp3/dset3> and </slink_grp3/dset3> +0 differences found +EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/h5diff_502.txt b/tools/h5diff/testfiles/h5diff_502.txt new file mode 100644 index 0000000..d3de6e5 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_502.txt @@ -0,0 +1,36 @@ + +group1 group2 +--------------------------------------- + x + x / + x x /dset1 + x x /dset2 + x x /dset3 + x /elink_grp1 + x /elink_grp2 + x /elink_grp3 + x /grp1 + x /grp1/dset1 + x /grp1/grp2 + x /grp1/grp2/dset1 + x /grp1/grp2/dset2 + x /grp1/grp2/grp3 + x /grp1/grp2/grp3/dset1 + x /grp1/grp2/grp3/dset2 + x /grp1/grp2/grp3/dset3 + x /grp10 + x /grp10/dset4 + x /grp10/dset5 + x /grp10/elink_grp_circle + x /slink_grp1 + x /slink_grp10 + x /slink_grp2 + x /slink_grp3 + +dataset: </dset1> and </grp1/grp2/grp3/dset1> +0 differences found +dataset: </dset2> and </grp1/grp2/grp3/dset2> +0 differences found +dataset: </dset3> and </grp1/grp2/grp3/dset3> +0 differences found +EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/h5diff_503.txt b/tools/h5diff/testfiles/h5diff_503.txt new file mode 100644 index 0000000..cf01598 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_503.txt @@ -0,0 +1,32 @@ + +group1 group2 +--------------------------------------- + x x + x x /dset1 + x x /grp2 + x x /grp2/dset1 + x x /grp2/dset2 + x x /grp2/grp3 + x x /grp2/grp3/dset1 + x x /grp2/grp3/dset2 + x x /grp2/grp3/dset3 + +group : </grp1> and </grp1> +0 differences found +dataset: </grp1/dset1> and </grp1/dset1> +0 differences found +group : </grp1/grp2> and </grp1/grp2> +0 differences found +dataset: </grp1/grp2/dset1> and </grp1/grp2/dset1> +0 differences found +dataset: </grp1/grp2/dset2> and </grp1/grp2/dset2> +0 differences found +group : </grp1/grp2/grp3> and </grp1/grp2/grp3> +0 differences found +dataset: </grp1/grp2/grp3/dset1> and </grp1/grp2/grp3/dset1> +0 differences found +dataset: </grp1/grp2/grp3/dset2> and </grp1/grp2/grp3/dset2> +0 differences found +dataset: </grp1/grp2/grp3/dset3> and </grp1/grp2/grp3/dset3> +0 differences found +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_504.txt b/tools/h5diff/testfiles/h5diff_504.txt new file mode 100644 index 0000000..6cf43b3 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_504.txt @@ -0,0 +1,19 @@ + +group1 group2 +--------------------------------------- + x x + x x /dset1 + x x /dset2 + x /dset3 + x /grp3 + x /grp3/dset1 + x /grp3/dset2 + x /grp3/dset3 + +group : </grp1/grp2> and </grp1/grp2/grp3> +0 differences found +dataset: </grp1/grp2/dset1> and </grp1/grp2/grp3/dset1> +0 differences found +dataset: </grp1/grp2/dset2> and </grp1/grp2/grp3/dset2> +0 differences found +EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/h5diff_505.txt b/tools/h5diff/testfiles/h5diff_505.txt new file mode 100644 index 0000000..28640b7 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_505.txt @@ -0,0 +1,6 @@ +</grp1> is of type H5G_GROUP and </slink_grp1> is of type H5G_LINK +-------------------------------- +Some objects are not comparable +-------------------------------- +Use -c for a list of objects. +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_506.txt b/tools/h5diff/testfiles/h5diff_506.txt new file mode 100644 index 0000000..efef9a7 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_506.txt @@ -0,0 +1,26 @@ + +group1 group2 +--------------------------------------- + x x + x x /dset1 + x x /dset2 + x x /grp3 + x x /grp3/dset1 + x x /grp3/dset2 + x x /grp3/dset3 + +group : </grp1/grp2> and </slink_grp2> +0 differences found +dataset: </grp1/grp2/dset1> and </slink_grp2/dset1> +0 differences found +dataset: </grp1/grp2/dset2> and </slink_grp2/dset2> +0 differences found +group : </grp1/grp2/grp3> and </slink_grp2/grp3> +0 differences found +dataset: </grp1/grp2/grp3/dset1> and </slink_grp2/grp3/dset1> +0 differences found +dataset: </grp1/grp2/grp3/dset2> and </slink_grp2/grp3/dset2> +0 differences found +dataset: </grp1/grp2/grp3/dset3> and </slink_grp2/grp3/dset3> +0 differences found +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_507.txt b/tools/h5diff/testfiles/h5diff_507.txt new file mode 100644 index 0000000..ed2b799 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_507.txt @@ -0,0 +1,6 @@ +</grp1> is of type H5G_GROUP and </elink_grp1> is of type H5G_UDLINK +-------------------------------- +Some objects are not comparable +-------------------------------- +Use -c for a list of objects. +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_508.txt b/tools/h5diff/testfiles/h5diff_508.txt new file mode 100644 index 0000000..9796345 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_508.txt @@ -0,0 +1,32 @@ + +group1 group2 +--------------------------------------- + x x + x x /dset1 + x x /grp2 + x x /grp2/dset1 + x x /grp2/dset2 + x x /grp2/grp3 + x x /grp2/grp3/dset1 + x x /grp2/grp3/dset2 + x x /grp2/grp3/dset3 + +group : </grp1> and </elink_grp1> +0 differences found +dataset: </grp1/dset1> and </elink_grp1/dset1> +0 differences found +group : </grp1/grp2> and </elink_grp1/grp2> +0 differences found +dataset: </grp1/grp2/dset1> and </elink_grp1/grp2/dset1> +0 differences found +dataset: </grp1/grp2/dset2> and </elink_grp1/grp2/dset2> +0 differences found +group : </grp1/grp2/grp3> and </elink_grp1/grp2/grp3> +0 differences found +dataset: </grp1/grp2/grp3/dset1> and </elink_grp1/grp2/grp3/dset1> +0 differences found +dataset: </grp1/grp2/grp3/dset2> and </elink_grp1/grp2/grp3/dset2> +0 differences found +dataset: </grp1/grp2/grp3/dset3> and </elink_grp1/grp2/grp3/dset3> +0 differences found +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_509.txt b/tools/h5diff/testfiles/h5diff_509.txt new file mode 100644 index 0000000..145cd9d --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_509.txt @@ -0,0 +1,6 @@ +</slink_grp1> is of type H5G_LINK and </elink_grp1> is of type H5G_UDLINK +-------------------------------- +Some objects are not comparable +-------------------------------- +Use -c for a list of objects. +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_510.txt b/tools/h5diff/testfiles/h5diff_510.txt new file mode 100644 index 0000000..9d92768 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_510.txt @@ -0,0 +1,32 @@ + +group1 group2 +--------------------------------------- + x x + x x /dset1 + x x /grp2 + x x /grp2/dset1 + x x /grp2/dset2 + x x /grp2/grp3 + x x /grp2/grp3/dset1 + x x /grp2/grp3/dset2 + x x /grp2/grp3/dset3 + +group : </slink_grp1> and </elink_grp1> +0 differences found +dataset: </slink_grp1/dset1> and </elink_grp1/dset1> +0 differences found +group : </slink_grp1/grp2> and </elink_grp1/grp2> +0 differences found +dataset: </slink_grp1/grp2/dset1> and </elink_grp1/grp2/dset1> +0 differences found +dataset: </slink_grp1/grp2/dset2> and </elink_grp1/grp2/dset2> +0 differences found +group : </slink_grp1/grp2/grp3> and </elink_grp1/grp2/grp3> +0 differences found +dataset: </slink_grp1/grp2/grp3/dset1> and </elink_grp1/grp2/grp3/dset1> +0 differences found +dataset: </slink_grp1/grp2/grp3/dset2> and </elink_grp1/grp2/grp3/dset2> +0 differences found +dataset: </slink_grp1/grp2/grp3/dset3> and </elink_grp1/grp2/grp3/dset3> +0 differences found +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_511.txt b/tools/h5diff/testfiles/h5diff_511.txt new file mode 100644 index 0000000..4bac100 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_511.txt @@ -0,0 +1,24 @@ + +group1 group2 +--------------------------------------- + x x + x x /dset4 + x x /dset5 + x x /elink_grp_circle + +group : </grp10> and </grp11> +0 differences found +dataset: </grp10/dset4> and </grp11/dset4> +0 differences found +dataset: </grp10/dset5> and </grp11/dset5> +size: [2x4] [2x4] +position dset5 dset5 difference +------------------------------------------------------------ +[ 0 1 ] 3 2 1 +[ 0 3 ] 3 2 1 +[ 1 0 ] 3 2 1 +[ 1 2 ] 3 2 1 +4 differences found +external link: </grp10/elink_grp_circle> and </grp11/elink_grp_circle> +1 differences found +EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/h5diff_512.txt b/tools/h5diff/testfiles/h5diff_512.txt new file mode 100644 index 0000000..23fbc12 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_512.txt @@ -0,0 +1,53 @@ + +group1 group2 +--------------------------------------- + x x + x x /dset4 + x x /dset5 + x x /elink_grp_circle + x x /elink_grp_circle/dset4 + x x /elink_grp_circle/dset5 + x x /elink_grp_circle/elink_grp_circle + x x /elink_grp_circle/elink_grp_circle/dset4 + x x /elink_grp_circle/elink_grp_circle/dset5 + +group : </grp10> and </grp11> +0 differences found +dataset: </grp10/dset4> and </grp11/dset4> +0 differences found +dataset: </grp10/dset5> and </grp11/dset5> +size: [2x4] [2x4] +position dset5 dset5 difference +------------------------------------------------------------ +[ 0 1 ] 3 2 1 +[ 0 3 ] 3 2 1 +[ 1 0 ] 3 2 1 +[ 1 2 ] 3 2 1 +4 differences found +group : </grp10/elink_grp_circle> and </grp11/elink_grp_circle> +0 differences found +dataset: </grp10/elink_grp_circle/dset4> and </grp11/elink_grp_circle/dset4> +0 differences found +dataset: </grp10/elink_grp_circle/dset5> and </grp11/elink_grp_circle/dset5> +size: [2x4] [2x4] +position dset5 dset5 difference +------------------------------------------------------------ +[ 0 1 ] 2 3 1 +[ 0 3 ] 2 3 1 +[ 1 0 ] 2 3 1 +[ 1 2 ] 2 3 1 +4 differences found +group : </grp10/elink_grp_circle/elink_grp_circle> and </grp11/elink_grp_circle/elink_grp_circle> +0 differences found +dataset: </grp10/elink_grp_circle/elink_grp_circle/dset4> and </grp11/elink_grp_circle/elink_grp_circle/dset4> +0 differences found +dataset: </grp10/elink_grp_circle/elink_grp_circle/dset5> and </grp11/elink_grp_circle/elink_grp_circle/dset5> +size: [2x4] [2x4] +position dset5 dset5 difference +------------------------------------------------------------ +[ 0 1 ] 3 2 1 +[ 0 3 ] 3 2 1 +[ 1 0 ] 3 2 1 +[ 1 2 ] 3 2 1 +4 differences found +EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/h5diff_513.txt b/tools/h5diff/testfiles/h5diff_513.txt new file mode 100644 index 0000000..b0af15d --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_513.txt @@ -0,0 +1,3 @@ +link : </slink_grp10> and </slink_grp11> +1 differences found +EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/h5diff_514.txt b/tools/h5diff/testfiles/h5diff_514.txt new file mode 100644 index 0000000..f8e16e9 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_514.txt @@ -0,0 +1,53 @@ + +group1 group2 +--------------------------------------- + x x + x x /dset4 + x x /dset5 + x x /elink_grp_circle + x x /elink_grp_circle/dset4 + x x /elink_grp_circle/dset5 + x x /elink_grp_circle/elink_grp_circle + x x /elink_grp_circle/elink_grp_circle/dset4 + x x /elink_grp_circle/elink_grp_circle/dset5 + +group : </slink_grp10> and </slink_grp11> +0 differences found +dataset: </slink_grp10/dset4> and </slink_grp11/dset4> +0 differences found +dataset: </slink_grp10/dset5> and </slink_grp11/dset5> +size: [2x4] [2x4] +position dset5 dset5 difference +------------------------------------------------------------ +[ 0 1 ] 3 2 1 +[ 0 3 ] 3 2 1 +[ 1 0 ] 3 2 1 +[ 1 2 ] 3 2 1 +4 differences found +group : </slink_grp10/elink_grp_circle> and </slink_grp11/elink_grp_circle> +0 differences found +dataset: </slink_grp10/elink_grp_circle/dset4> and </slink_grp11/elink_grp_circle/dset4> +0 differences found +dataset: </slink_grp10/elink_grp_circle/dset5> and </slink_grp11/elink_grp_circle/dset5> +size: [2x4] [2x4] +position dset5 dset5 difference +------------------------------------------------------------ +[ 0 1 ] 2 3 1 +[ 0 3 ] 2 3 1 +[ 1 0 ] 2 3 1 +[ 1 2 ] 2 3 1 +4 differences found +group : </slink_grp10/elink_grp_circle/elink_grp_circle> and </slink_grp11/elink_grp_circle/elink_grp_circle> +0 differences found +dataset: </slink_grp10/elink_grp_circle/elink_grp_circle/dset4> and </slink_grp11/elink_grp_circle/elink_grp_circle/dset4> +0 differences found +dataset: </slink_grp10/elink_grp_circle/elink_grp_circle/dset5> and </slink_grp11/elink_grp_circle/elink_grp_circle/dset5> +size: [2x4] [2x4] +position dset5 dset5 difference +------------------------------------------------------------ +[ 0 1 ] 3 2 1 +[ 0 3 ] 3 2 1 +[ 1 0 ] 3 2 1 +[ 1 2 ] 3 2 1 +4 differences found +EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/h5diff_515.txt b/tools/h5diff/testfiles/h5diff_515.txt new file mode 100644 index 0000000..077d463 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_515.txt @@ -0,0 +1,24 @@ + +file1 file2 +--------------------------------------- + x x / + x x /dset1 + x x /g1 + x x /g1/g2 + x /g1/g2/g3 + x /g1/g2/g3/dset1 + x /g1/g2/g3/g4 + x /g1/g2/g3/g4/dset2 + x x /soft_dset1 + +group : </> and </> +0 differences found +dataset: </dset1> and </dset1> +0 differences found +group : </g1> and </g1> +0 differences found +group : </g1/g2> and </g1/g2> +0 differences found +link : </soft_dset1> and </soft_dset1> +0 differences found +EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/h5diff_516.txt b/tools/h5diff/testfiles/h5diff_516.txt new file mode 100644 index 0000000..32f4bd5 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_516.txt @@ -0,0 +1,32 @@ + +file1 file2 +--------------------------------------- + x x / + x x /dset1 + x x /g1 + x x /g1/g2 + x x /g1/g2/g3 + x x /g1/g2/g3/dset1 + x x /g1/g2/g3/g4 + x x /g1/g2/g3/g4/dset2 + x x /soft_dset1 + +group : </> and </> +0 differences found +dataset: </dset1> and </dset1> +0 differences found +group : </g1> and </g1> +0 differences found +group : </g1/g2> and </g1/g2> +0 differences found +group : </g1/g2/g3> and </g1/g2/g3> +0 differences found +dataset: </g1/g2/g3/dset1> and </g1/g2/g3/dset1> +0 differences found +group : </g1/g2/g3/g4> and </g1/g2/g3/g4> +0 differences found +dataset: </g1/g2/g3/g4/dset2> and </g1/g2/g3/g4/dset2> +0 differences found +dataset: </soft_dset1> and </soft_dset1> +0 differences found +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_517.txt b/tools/h5diff/testfiles/h5diff_517.txt new file mode 100644 index 0000000..1b6e24f --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_517.txt @@ -0,0 +1,15 @@ + +group1 group2 +--------------------------------------- + x x + x x /g2 + x /g2/g3 + x /g2/g3/dset1 + x /g2/g3/g4 + x /g2/g3/g4/dset2 + +group : </g1> and </g1> +0 differences found +group : </g1/g2> and </g1/g2> +0 differences found +EXIT CODE: 1 diff --git a/tools/h5diff/testfiles/h5diff_518.txt b/tools/h5diff/testfiles/h5diff_518.txt new file mode 100644 index 0000000..f4761ad --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_518.txt @@ -0,0 +1,23 @@ + +group1 group2 +--------------------------------------- + x x + x x /g2 + x x /g2/g3 + x x /g2/g3/dset1 + x x /g2/g3/g4 + x x /g2/g3/g4/dset2 + +group : </g1> and </g1> +0 differences found +group : </g1/g2> and </g1/g2> +0 differences found +group : </g1/g2/g3> and </g1/g2/g3> +0 differences found +dataset: </g1/g2/g3/dset1> and </g1/g2/g3/dset1> +0 differences found +group : </g1/g2/g3/g4> and </g1/g2/g3/g4> +0 differences found +dataset: </g1/g2/g3/g4/dset2> and </g1/g2/g3/g4/dset2> +0 differences found +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_600.txt b/tools/h5diff/testfiles/h5diff_600.txt index cf540ab..b096ab5 100644 --- a/tools/h5diff/testfiles/h5diff_600.txt +++ b/tools/h5diff/testfiles/h5diff_600.txt @@ -1,4 +1,4 @@ -usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] +usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] file1 File name of the first HDF5 file file2 File name of the second HDF5 file [obj1] Name of an HDF5 object, in absolute path @@ -69,16 +69,26 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] -v Verbose mode: print the above plus a list of objects and warnings -q Quiet mode: do not print output - Compare criteria - If no objects [obj1[obj2]] are specified, h5diff only compares objects - with the same absolute path in both files + File comparison: + If no objects [obj1[ obj2]] are specified, the h5diff comparison proceeds as + a comparison of the two files' root groups. That is, h5diff first compares + the names of root group members, generates a report of root group objects + that appear in only one file or in both files, and recursively compares + common objects. - The compare criteria is: - 1) datasets: numerical array differences - 2) groups: name string difference - 3) datatypes: the return value of H5Tequal - 4) links: name string difference of the linked value as default - (refer to --follow-symlinks option). + Object comparison: + 1) Groups + First compares the names of member objects (relative path, from the + specified group) and generates a report of objects that appear in only + one group or in both groups. Common objects are then compared recursively. + 2) Datasets + Array rank and dimensions, datatypes, and data values are compared. + 3) Datatypes + The comparison is based on the return value of H5Tequal. + 4) Symbolic links + The paths to the target objects are compared. + (The option --follow-symlinks overrides the default behavior when + symbolic links are compared.). Exit code: 0 if no differences, 1 if differences found, 2 if error diff --git a/tools/h5diff/testfiles/h5diff_601.txt b/tools/h5diff/testfiles/h5diff_601.txt new file mode 100644 index 0000000..eb12f38 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_601.txt @@ -0,0 +1,2 @@ +Object </nono_obj> could not be found in <h5diff_basic1.h5> +EXIT CODE: 2 diff --git a/tools/h5diff/testfiles/h5diff_603.txt b/tools/h5diff/testfiles/h5diff_603.txt index 2f2e93f..2b37530 100644 --- a/tools/h5diff/testfiles/h5diff_603.txt +++ b/tools/h5diff/testfiles/h5diff_603.txt @@ -1,5 +1,5 @@ <-d -4> is not a valid option -usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] +usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] file1 File name of the first HDF5 file file2 File name of the second HDF5 file [obj1] Name of an HDF5 object, in absolute path @@ -70,16 +70,26 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] -v Verbose mode: print the above plus a list of objects and warnings -q Quiet mode: do not print output - Compare criteria - If no objects [obj1[obj2]] are specified, h5diff only compares objects - with the same absolute path in both files + File comparison: + If no objects [obj1[ obj2]] are specified, the h5diff comparison proceeds as + a comparison of the two files' root groups. That is, h5diff first compares + the names of root group members, generates a report of root group objects + that appear in only one file or in both files, and recursively compares + common objects. - The compare criteria is: - 1) datasets: numerical array differences - 2) groups: name string difference - 3) datatypes: the return value of H5Tequal - 4) links: name string difference of the linked value as default - (refer to --follow-symlinks option). + Object comparison: + 1) Groups + First compares the names of member objects (relative path, from the + specified group) and generates a report of objects that appear in only + one group or in both groups. Common objects are then compared recursively. + 2) Datasets + Array rank and dimensions, datatypes, and data values are compared. + 3) Datatypes + The comparison is based on the return value of H5Tequal. + 4) Symbolic links + The paths to the target objects are compared. + (The option --follow-symlinks overrides the default behavior when + symbolic links are compared.). Exit code: 0 if no differences, 1 if differences found, 2 if error diff --git a/tools/h5diff/testfiles/h5diff_606.txt b/tools/h5diff/testfiles/h5diff_606.txt index 3381406..63a1d53 100644 --- a/tools/h5diff/testfiles/h5diff_606.txt +++ b/tools/h5diff/testfiles/h5diff_606.txt @@ -1,5 +1,5 @@ <-d 0x1> is not a valid option -usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] +usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] file1 File name of the first HDF5 file file2 File name of the second HDF5 file [obj1] Name of an HDF5 object, in absolute path @@ -70,16 +70,26 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] -v Verbose mode: print the above plus a list of objects and warnings -q Quiet mode: do not print output - Compare criteria - If no objects [obj1[obj2]] are specified, h5diff only compares objects - with the same absolute path in both files + File comparison: + If no objects [obj1[ obj2]] are specified, the h5diff comparison proceeds as + a comparison of the two files' root groups. That is, h5diff first compares + the names of root group members, generates a report of root group objects + that appear in only one file or in both files, and recursively compares + common objects. - The compare criteria is: - 1) datasets: numerical array differences - 2) groups: name string difference - 3) datatypes: the return value of H5Tequal - 4) links: name string difference of the linked value as default - (refer to --follow-symlinks option). + Object comparison: + 1) Groups + First compares the names of member objects (relative path, from the + specified group) and generates a report of objects that appear in only + one group or in both groups. Common objects are then compared recursively. + 2) Datasets + Array rank and dimensions, datatypes, and data values are compared. + 3) Datatypes + The comparison is based on the return value of H5Tequal. + 4) Symbolic links + The paths to the target objects are compared. + (The option --follow-symlinks overrides the default behavior when + symbolic links are compared.). Exit code: 0 if no differences, 1 if differences found, 2 if error diff --git a/tools/h5diff/testfiles/h5diff_612.txt b/tools/h5diff/testfiles/h5diff_612.txt index 8c6051e..6141495 100644 --- a/tools/h5diff/testfiles/h5diff_612.txt +++ b/tools/h5diff/testfiles/h5diff_612.txt @@ -1,5 +1,5 @@ <-p -4> is not a valid option -usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] +usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] file1 File name of the first HDF5 file file2 File name of the second HDF5 file [obj1] Name of an HDF5 object, in absolute path @@ -70,16 +70,26 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] -v Verbose mode: print the above plus a list of objects and warnings -q Quiet mode: do not print output - Compare criteria - If no objects [obj1[obj2]] are specified, h5diff only compares objects - with the same absolute path in both files + File comparison: + If no objects [obj1[ obj2]] are specified, the h5diff comparison proceeds as + a comparison of the two files' root groups. That is, h5diff first compares + the names of root group members, generates a report of root group objects + that appear in only one file or in both files, and recursively compares + common objects. - The compare criteria is: - 1) datasets: numerical array differences - 2) groups: name string difference - 3) datatypes: the return value of H5Tequal - 4) links: name string difference of the linked value as default - (refer to --follow-symlinks option). + Object comparison: + 1) Groups + First compares the names of member objects (relative path, from the + specified group) and generates a report of objects that appear in only + one group or in both groups. Common objects are then compared recursively. + 2) Datasets + Array rank and dimensions, datatypes, and data values are compared. + 3) Datatypes + The comparison is based on the return value of H5Tequal. + 4) Symbolic links + The paths to the target objects are compared. + (The option --follow-symlinks overrides the default behavior when + symbolic links are compared.). Exit code: 0 if no differences, 1 if differences found, 2 if error diff --git a/tools/h5diff/testfiles/h5diff_615.txt b/tools/h5diff/testfiles/h5diff_615.txt index b713c7b..eaa2078 100644 --- a/tools/h5diff/testfiles/h5diff_615.txt +++ b/tools/h5diff/testfiles/h5diff_615.txt @@ -1,5 +1,5 @@ <-p 0x1> is not a valid option -usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] +usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] file1 File name of the first HDF5 file file2 File name of the second HDF5 file [obj1] Name of an HDF5 object, in absolute path @@ -70,16 +70,26 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] -v Verbose mode: print the above plus a list of objects and warnings -q Quiet mode: do not print output - Compare criteria - If no objects [obj1[obj2]] are specified, h5diff only compares objects - with the same absolute path in both files + File comparison: + If no objects [obj1[ obj2]] are specified, the h5diff comparison proceeds as + a comparison of the two files' root groups. That is, h5diff first compares + the names of root group members, generates a report of root group objects + that appear in only one file or in both files, and recursively compares + common objects. - The compare criteria is: - 1) datasets: numerical array differences - 2) groups: name string difference - 3) datatypes: the return value of H5Tequal - 4) links: name string difference of the linked value as default - (refer to --follow-symlinks option). + Object comparison: + 1) Groups + First compares the names of member objects (relative path, from the + specified group) and generates a report of objects that appear in only + one group or in both groups. Common objects are then compared recursively. + 2) Datasets + Array rank and dimensions, datatypes, and data values are compared. + 3) Datatypes + The comparison is based on the return value of H5Tequal. + 4) Symbolic links + The paths to the target objects are compared. + (The option --follow-symlinks overrides the default behavior when + symbolic links are compared.). Exit code: 0 if no differences, 1 if differences found, 2 if error diff --git a/tools/h5diff/testfiles/h5diff_621.txt b/tools/h5diff/testfiles/h5diff_621.txt index ee23b90..8319db9 100644 --- a/tools/h5diff/testfiles/h5diff_621.txt +++ b/tools/h5diff/testfiles/h5diff_621.txt @@ -1,5 +1,5 @@ <-n -4> is not a valid option -usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] +usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] file1 File name of the first HDF5 file file2 File name of the second HDF5 file [obj1] Name of an HDF5 object, in absolute path @@ -70,16 +70,26 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] -v Verbose mode: print the above plus a list of objects and warnings -q Quiet mode: do not print output - Compare criteria - If no objects [obj1[obj2]] are specified, h5diff only compares objects - with the same absolute path in both files + File comparison: + If no objects [obj1[ obj2]] are specified, the h5diff comparison proceeds as + a comparison of the two files' root groups. That is, h5diff first compares + the names of root group members, generates a report of root group objects + that appear in only one file or in both files, and recursively compares + common objects. - The compare criteria is: - 1) datasets: numerical array differences - 2) groups: name string difference - 3) datatypes: the return value of H5Tequal - 4) links: name string difference of the linked value as default - (refer to --follow-symlinks option). + Object comparison: + 1) Groups + First compares the names of member objects (relative path, from the + specified group) and generates a report of objects that appear in only + one group or in both groups. Common objects are then compared recursively. + 2) Datasets + Array rank and dimensions, datatypes, and data values are compared. + 3) Datatypes + The comparison is based on the return value of H5Tequal. + 4) Symbolic links + The paths to the target objects are compared. + (The option --follow-symlinks overrides the default behavior when + symbolic links are compared.). Exit code: 0 if no differences, 1 if differences found, 2 if error diff --git a/tools/h5diff/testfiles/h5diff_622.txt b/tools/h5diff/testfiles/h5diff_622.txt index 11e2ce1..1ccff92 100644 --- a/tools/h5diff/testfiles/h5diff_622.txt +++ b/tools/h5diff/testfiles/h5diff_622.txt @@ -1,5 +1,5 @@ <-n 0> is not a valid option -usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] +usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] file1 File name of the first HDF5 file file2 File name of the second HDF5 file [obj1] Name of an HDF5 object, in absolute path @@ -70,16 +70,26 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] -v Verbose mode: print the above plus a list of objects and warnings -q Quiet mode: do not print output - Compare criteria - If no objects [obj1[obj2]] are specified, h5diff only compares objects - with the same absolute path in both files + File comparison: + If no objects [obj1[ obj2]] are specified, the h5diff comparison proceeds as + a comparison of the two files' root groups. That is, h5diff first compares + the names of root group members, generates a report of root group objects + that appear in only one file or in both files, and recursively compares + common objects. - The compare criteria is: - 1) datasets: numerical array differences - 2) groups: name string difference - 3) datatypes: the return value of H5Tequal - 4) links: name string difference of the linked value as default - (refer to --follow-symlinks option). + Object comparison: + 1) Groups + First compares the names of member objects (relative path, from the + specified group) and generates a report of objects that appear in only + one group or in both groups. Common objects are then compared recursively. + 2) Datasets + Array rank and dimensions, datatypes, and data values are compared. + 3) Datatypes + The comparison is based on the return value of H5Tequal. + 4) Symbolic links + The paths to the target objects are compared. + (The option --follow-symlinks overrides the default behavior when + symbolic links are compared.). Exit code: 0 if no differences, 1 if differences found, 2 if error diff --git a/tools/h5diff/testfiles/h5diff_623.txt b/tools/h5diff/testfiles/h5diff_623.txt index f87d6db..2c15d98 100644 --- a/tools/h5diff/testfiles/h5diff_623.txt +++ b/tools/h5diff/testfiles/h5diff_623.txt @@ -1,5 +1,5 @@ <-n u> is not a valid option -usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] +usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] file1 File name of the first HDF5 file file2 File name of the second HDF5 file [obj1] Name of an HDF5 object, in absolute path @@ -70,16 +70,26 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] -v Verbose mode: print the above plus a list of objects and warnings -q Quiet mode: do not print output - Compare criteria - If no objects [obj1[obj2]] are specified, h5diff only compares objects - with the same absolute path in both files + File comparison: + If no objects [obj1[ obj2]] are specified, the h5diff comparison proceeds as + a comparison of the two files' root groups. That is, h5diff first compares + the names of root group members, generates a report of root group objects + that appear in only one file or in both files, and recursively compares + common objects. - The compare criteria is: - 1) datasets: numerical array differences - 2) groups: name string difference - 3) datatypes: the return value of H5Tequal - 4) links: name string difference of the linked value as default - (refer to --follow-symlinks option). + Object comparison: + 1) Groups + First compares the names of member objects (relative path, from the + specified group) and generates a report of objects that appear in only + one group or in both groups. Common objects are then compared recursively. + 2) Datasets + Array rank and dimensions, datatypes, and data values are compared. + 3) Datatypes + The comparison is based on the return value of H5Tequal. + 4) Symbolic links + The paths to the target objects are compared. + (The option --follow-symlinks overrides the default behavior when + symbolic links are compared.). Exit code: 0 if no differences, 1 if differences found, 2 if error diff --git a/tools/h5diff/testfiles/h5diff_624.txt b/tools/h5diff/testfiles/h5diff_624.txt index 4c9da26..272b9fc 100644 --- a/tools/h5diff/testfiles/h5diff_624.txt +++ b/tools/h5diff/testfiles/h5diff_624.txt @@ -1,5 +1,5 @@ <-n 0x1> is not a valid option -usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] +usage: h5diff [OPTIONS] file1 file2 [obj1[ obj2]] file1 File name of the first HDF5 file file2 File name of the second HDF5 file [obj1] Name of an HDF5 object, in absolute path @@ -70,16 +70,26 @@ usage: h5diff [OPTIONS] file1 file2 [obj1[obj2]] -v Verbose mode: print the above plus a list of objects and warnings -q Quiet mode: do not print output - Compare criteria - If no objects [obj1[obj2]] are specified, h5diff only compares objects - with the same absolute path in both files + File comparison: + If no objects [obj1[ obj2]] are specified, the h5diff comparison proceeds as + a comparison of the two files' root groups. That is, h5diff first compares + the names of root group members, generates a report of root group objects + that appear in only one file or in both files, and recursively compares + common objects. - The compare criteria is: - 1) datasets: numerical array differences - 2) groups: name string difference - 3) datatypes: the return value of H5Tequal - 4) links: name string difference of the linked value as default - (refer to --follow-symlinks option). + Object comparison: + 1) Groups + First compares the names of member objects (relative path, from the + specified group) and generates a report of objects that appear in only + one group or in both groups. Common objects are then compared recursively. + 2) Datasets + Array rank and dimensions, datatypes, and data values are compared. + 3) Datatypes + The comparison is based on the return value of H5Tequal. + 4) Symbolic links + The paths to the target objects are compared. + (The option --follow-symlinks overrides the default behavior when + symbolic links are compared.). Exit code: 0 if no differences, 1 if differences found, 2 if error diff --git a/tools/h5diff/testfiles/h5diff_exclude1-1.h5 b/tools/h5diff/testfiles/h5diff_exclude1-1.h5 Binary files differnew file mode 100644 index 0000000..8b675ea --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_exclude1-1.h5 diff --git a/tools/h5diff/testfiles/h5diff_exclude1-2.h5 b/tools/h5diff/testfiles/h5diff_exclude1-2.h5 Binary files differnew file mode 100644 index 0000000..78854cd --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_exclude1-2.h5 diff --git a/tools/h5diff/testfiles/h5diff_exclude2-1.h5 b/tools/h5diff/testfiles/h5diff_exclude2-1.h5 Binary files differnew file mode 100644 index 0000000..8923111 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_exclude2-1.h5 diff --git a/tools/h5diff/testfiles/h5diff_exclude2-2.h5 b/tools/h5diff/testfiles/h5diff_exclude2-2.h5 Binary files differnew file mode 100644 index 0000000..9e42007 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_exclude2-2.h5 diff --git a/tools/h5diff/testfiles/h5diff_grp_recurse1.h5 b/tools/h5diff/testfiles/h5diff_grp_recurse1.h5 Binary files differnew file mode 100644 index 0000000..cfd4e62 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_grp_recurse1.h5 diff --git a/tools/h5diff/testfiles/h5diff_grp_recurse2.h5 b/tools/h5diff/testfiles/h5diff_grp_recurse2.h5 Binary files differnew file mode 100644 index 0000000..54bcdec --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_grp_recurse2.h5 diff --git a/tools/h5diff/testfiles/h5diff_grp_recurse_ext1.h5 b/tools/h5diff/testfiles/h5diff_grp_recurse_ext1.h5 Binary files differnew file mode 100644 index 0000000..12a534a --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_grp_recurse_ext1.h5 diff --git a/tools/h5diff/testfiles/h5diff_grp_recurse_ext2-1.h5 b/tools/h5diff/testfiles/h5diff_grp_recurse_ext2-1.h5 Binary files differnew file mode 100644 index 0000000..5bb02df --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_grp_recurse_ext2-1.h5 diff --git a/tools/h5diff/testfiles/h5diff_grp_recurse_ext2-2.h5 b/tools/h5diff/testfiles/h5diff_grp_recurse_ext2-2.h5 Binary files differnew file mode 100644 index 0000000..312543e --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_grp_recurse_ext2-2.h5 diff --git a/tools/h5diff/testfiles/h5diff_grp_recurse_ext2-3.h5 b/tools/h5diff/testfiles/h5diff_grp_recurse_ext2-3.h5 Binary files differnew file mode 100644 index 0000000..43ad156 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_grp_recurse_ext2-3.h5 diff --git a/tools/h5diff/testh5diff.sh b/tools/h5diff/testh5diff.sh index 12cf0f8..df793f0 100755 --- a/tools/h5diff/testh5diff.sh +++ b/tools/h5diff/testh5diff.sh @@ -56,6 +56,20 @@ FILE19=h5diff_dset_idx1.h5 FILE20=h5diff_dset_idx2.h5 DANGLE_LINK_FILE1=h5diff_danglelinks1.h5 DANGLE_LINK_FILE2=h5diff_danglelinks2.h5 +/* group recursive */ +GRP_RECURSE_FILE1=h5diff_grp_recurse1.h5 +GRP_RECURSE_FILE2=h5diff_grp_recurse2.h5 +/* group recursive - same structure via external links through files */ +GRP_RECURSE1_EXT=h5diff_grp_recurse_ext1.h5 +GRP_RECURSE2_EXT1=h5diff_grp_recurse_ext2-1.h5 +GRP_RECURSE2_EXT2=h5diff_grp_recurse_ext2-2.h5 +GRP_RECURSE2_EXT3=h5diff_grp_recurse_ext2-3.h5 +# same structure, same obj name with different value +EXCLUDE_FILE1_1=h5diff_exclude1-1.h5 +EXCLUDE_FILE1_2=h5diff_exclude1-2.h5 +# different structure and obj names +EXCLUDE_FILE2_1=h5diff_exclude2-1.h5 +EXCLUDE_FILE2_2=h5diff_exclude2-2.h5 TESTNAME=h5diff EXIT_SUCCESS=0 @@ -307,7 +321,6 @@ SKIP() { # # Common usage # ############################################################################ - # 1.0 TOOLTEST h5diff_10.txt -h @@ -427,6 +440,9 @@ TOOLTEST h5diff_58.txt -v $FILE7 $FILE8 refreg # 6.0: Check if the command line number of arguments is less than 3 TOOLTEST h5diff_600.txt $FILE1 +# 6.1: Check if non-exist object name is specified +TOOLTEST h5diff_601.txt $FILE1 $FILE1 nono_obj + # ############################################################################## # # -d @@ -696,6 +712,75 @@ TOOLTEST h5diff_459.txt --follow-symlinks -v --no-dangling-links $FILE15 $FILE # ############################################################################## +# # test for group diff recursivly +# ############################################################################## +# root +TOOLTEST h5diff_500.txt -v $GRP_RECURSE_FILE1 $GRP_RECURSE_FILE2 / / +TOOLTEST h5diff_501.txt -v --follow-symlinks $GRP_RECURSE_FILE1 $GRP_RECURSE_FILE2 / / + +# root vs group +TOOLTEST h5diff_502.txt -v $GRP_RECURSE_FILE1 $GRP_RECURSE_FILE2 / /grp1/grp2/grp3 + +# group vs group (same name and structure) +TOOLTEST h5diff_503.txt -v $GRP_RECURSE_FILE1 $GRP_RECURSE_FILE2 /grp1 /grp1 + +# group vs group (different name and structure) +TOOLTEST h5diff_504.txt -v $GRP_RECURSE_FILE1 $GRP_RECURSE_FILE2 /grp1/grp2 /grp1/grp2/grp3 + +# groups vs soft-link +TOOLTEST h5diff_505.txt -v $GRP_RECURSE_FILE1 $GRP_RECURSE_FILE2 /grp1 /slink_grp1 +TOOLTEST h5diff_506.txt -v --follow-symlinks $GRP_RECURSE_FILE1 $GRP_RECURSE_FILE2 /grp1/grp2 /slink_grp2 + +# groups vs ext-link +TOOLTEST h5diff_507.txt -v $GRP_RECURSE_FILE1 $GRP_RECURSE_FILE2 /grp1 /elink_grp1 +TOOLTEST h5diff_508.txt -v --follow-symlinks $GRP_RECURSE_FILE1 $GRP_RECURSE_FILE2 /grp1 /elink_grp1 + +# soft-link vs ext-link +TOOLTEST h5diff_509.txt -v $GRP_RECURSE_FILE1 $GRP_RECURSE_FILE2 /slink_grp1 /elink_grp1 +TOOLTEST h5diff_510.txt -v --follow-symlinks $GRP_RECURSE_FILE1 $GRP_RECURSE_FILE2 /slink_grp1 /elink_grp1 + +# circled ext links +TOOLTEST h5diff_511.txt -v $GRP_RECURSE_FILE1 $GRP_RECURSE_FILE2 /grp10 /grp11 +TOOLTEST h5diff_512.txt -v --follow-symlinks $GRP_RECURSE_FILE1 $GRP_RECURSE_FILE2 /grp10 /grp11 + +# circled soft2ext-link vs soft2ext-link +TOOLTEST h5diff_513.txt -v $GRP_RECURSE_FILE1 $GRP_RECURSE_FILE2 /slink_grp10 /slink_grp11 +TOOLTEST h5diff_514.txt -v --follow-symlinks $GRP_RECURSE_FILE1 $GRP_RECURSE_FILE2 /slink_grp10 /slink_grp11 + +############################################################################### +# Test for group recursive diff via multi-linked external links +# With follow-symlinks, file $GRP_RECURSE1_EXT and $GRP_RECURSE2_EXT1 should +# be same with the external links. +############################################################################### +# file vs file +TOOLTEST h5diff_515.txt -v $GRP_RECURSE1_EXT $GRP_RECURSE2_EXT1 +TOOLTEST h5diff_516.txt -v --follow-symlinks $GRP_RECURSE1_EXT $GRP_RECURSE2_EXT1 +# group vs group +TOOLTEST h5diff_517.txt -v $GRP_RECURSE1_EXT $GRP_RECURSE2_EXT1 /g1 +TOOLTEST h5diff_518.txt -v --follow-symlinks $GRP_RECURSE1_EXT $GRP_RECURSE2_EXT1 /g1 + +# ############################################################################## +# # Exclude objects (--exclude-path) +# ############################################################################## +# +# Same structure, same names and different value. +# +# Exclude the object with different value. Expect return - same +TOOLTEST h5diff_480.txt -v --exclude-path /group1/dset3 $EXCLUDE_FILE1_1 $EXCLUDE_FILE1_2 +# Verify different by not excluding. Expect return - diff +TOOLTEST h5diff_481.txt -v $EXCLUDE_FILE1_1 $EXCLUDE_FILE1_2 + +# +# Different structure, different names. +# +# Exclude all the different objects. Expect return - same +TOOLTEST h5diff_482.txt -v --exclude-path "/group1" --exclude-path "/dset1" $EXCLUDE_FILE2_1 $EXCLUDE_FILE2_2 +# Exclude only some different objects. Expect return - diff +TOOLTEST h5diff_483.txt -v --exclude-path "/group1" $EXCLUDE_FILE2_1 $EXCLUDE_FILE2_2 + + + +# ############################################################################## # # END # ############################################################################## diff --git a/tools/h5dump/CMakeLists.txt b/tools/h5dump/CMakeLists.txt index 5ef1cc2..e64bc48 100644 --- a/tools/h5dump/CMakeLists.txt +++ b/tools/h5dump/CMakeLists.txt @@ -12,16 +12,7 @@ INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) # -------------------------------------------------------------------- ADD_EXECUTABLE (h5dump ${HDF5_TOOLS_H5DUMP_SOURCE_DIR}/h5dump.c) H5_NAMING (h5dump) -IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (h5dump - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) -ENDIF (WIN32) +TARGET_WIN_PROPERTIES (h5dump) TARGET_LINK_LIBRARIES (h5dump ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) SET (H5_DEP_EXECUTABLES h5dump) @@ -39,14 +30,7 @@ IF (BUILD_TESTING) IF (HDF5_BUILD_GENERATORS AND NOT BUILD_SHARED_LIBS) ADD_EXECUTABLE (h5dumpgentest ${HDF5_TOOLS_H5DUMP_SOURCE_DIR}/h5dumpgentest.c) H5_NAMING (h5dumpgentest) - IF (WIN32) - IF (MSVC) - SET_TARGET_PROPERTIES (h5dumpgentest - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (MSVC) - ENDIF (WIN32) + TARGET_WIN_PROPERTIES (h5dumpgentest) TARGET_LINK_LIBRARIES (h5dumpgentest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) #ADD_TEST (NAME h5dumpgentest COMMAND $<TARGET_FILE:h5dumpgentest>) diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in index e3323a0..3e76f2d 100644 --- a/tools/h5dump/Makefile.in +++ b/tools/h5dump/Makefile.in @@ -306,7 +306,6 @@ libdir = @libdir@ libexecdir = @libexecdir@ localedir = @localedir@ localstatedir = @localstatedir@ -lt_ECHO = @lt_ECHO@ mandir = @mandir@ mkdir_p = @mkdir_p@ oldincludedir = @oldincludedir@ @@ -355,6 +354,7 @@ H5CC_PP = $(bindir)/h5pcc H5FC = $(bindir)/h5fc H5FC_PP = $(bindir)/h5pfc H5CPP = $(bindir)/h5c++ +ACLOCAL_AMFLAGS = "-I m4" # The trace script; this is used on source files from the C library to # insert tracing macros. diff --git a/tools/h5import/CMakeLists.txt b/tools/h5import/CMakeLists.txt index 3c82492..7d937bd 100644 --- a/tools/h5import/CMakeLists.txt +++ b/tools/h5import/CMakeLists.txt @@ -12,16 +12,7 @@ INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) # -------------------------------------------------------------------- ADD_EXECUTABLE (h5import ${HDF5_TOOLS_H5IMPORT_SOURCE_DIR}/h5import.c) H5_NAMING (h5import) -IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (h5import - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) -ENDIF (WIN32) +TARGET_WIN_PROPERTIES (h5import) TARGET_LINK_LIBRARIES (h5import ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) SET (H5_DEP_EXECUTABLES h5import) @@ -38,16 +29,7 @@ IF (BUILD_TESTING) # -------------------------------------------------------------------- ADD_EXECUTABLE (h5importtest ${HDF5_TOOLS_H5IMPORT_SOURCE_DIR}/h5importtest.c) H5_NAMING (h5importtest) - IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (h5importtest - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) - ENDIF (WIN32) + TARGET_WIN_PROPERTIES (h5importtest) TARGET_LINK_LIBRARIES (h5importtest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) ############################################################################## diff --git a/tools/h5import/Makefile.in b/tools/h5import/Makefile.in index 3df03c4..fb40139 100755 --- a/tools/h5import/Makefile.in +++ b/tools/h5import/Makefile.in @@ -301,7 +301,6 @@ libdir = @libdir@ libexecdir = @libexecdir@ localedir = @localedir@ localstatedir = @localstatedir@ -lt_ECHO = @lt_ECHO@ mandir = @mandir@ mkdir_p = @mkdir_p@ oldincludedir = @oldincludedir@ @@ -350,6 +349,7 @@ H5CC_PP = $(bindir)/h5pcc H5FC = $(bindir)/h5fc H5FC_PP = $(bindir)/h5pfc H5CPP = $(bindir)/h5c++ +ACLOCAL_AMFLAGS = "-I m4" # The trace script; this is used on source files from the C library to # insert tracing macros. diff --git a/tools/h5jam/CMakeLists.txt b/tools/h5jam/CMakeLists.txt index 61b8c84..94f2e4b 100644 --- a/tools/h5jam/CMakeLists.txt +++ b/tools/h5jam/CMakeLists.txt @@ -12,58 +12,22 @@ INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) # -------------------------------------------------------------------- ADD_EXECUTABLE (h5jam ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/h5jam.c) H5_NAMING (h5jam) -IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (h5jam - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) -ENDIF (WIN32) +TARGET_WIN_PROPERTIES (h5jam) TARGET_LINK_LIBRARIES (h5jam ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) ADD_EXECUTABLE (getub ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/getub.c) H5_NAMING (getub) -IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (getub - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) -ENDIF (WIN32) +TARGET_WIN_PROPERTIES (getub) TARGET_LINK_LIBRARIES (getub ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) ADD_EXECUTABLE (tellub ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/tellub.c) H5_NAMING (tellub) -IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (tellub - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) -ENDIF (WIN32) +TARGET_WIN_PROPERTIES (tellub) TARGET_LINK_LIBRARIES (tellub ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) ADD_EXECUTABLE (h5unjam ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/h5unjam.c) H5_NAMING (h5unjam) -IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (h5unjam - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) -ENDIF (WIN32) +TARGET_WIN_PROPERTIES (h5unjam) TARGET_LINK_LIBRARIES (h5unjam ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) SET (H5_DEP_EXECUTABLES @@ -86,14 +50,7 @@ IF (BUILD_TESTING) IF (HDF5_BUILD_GENERATORS AND NOT BUILD_SHARED_LIBS) ADD_EXECUTABLE (h5jamgentest ${HDF5_TOOLS_H5JAM_SOURCE_DIR}/h5jamgentest.c) H5_NAMING (h5jamgentest) - IF (WIN32) - IF (MSVC) - SET_TARGET_PROPERTIES (h5jamgentest - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (MSVC) - ENDIF (WIN32) + TARGET_WIN_PROPERTIES (h5jamgentest) TARGET_LINK_LIBRARIES (h5jamgentest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) #ADD_TEST (NAME h5jamgentest COMMAND $<TARGET_FILE:h5jamgentest>) diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in index d6b4702..2850a08 100644 --- a/tools/h5jam/Makefile.in +++ b/tools/h5jam/Makefile.in @@ -315,7 +315,6 @@ libdir = @libdir@ libexecdir = @libexecdir@ localedir = @localedir@ localstatedir = @localstatedir@ -lt_ECHO = @lt_ECHO@ mandir = @mandir@ mkdir_p = @mkdir_p@ oldincludedir = @oldincludedir@ @@ -364,6 +363,7 @@ H5CC_PP = $(bindir)/h5pcc H5FC = $(bindir)/h5fc H5FC_PP = $(bindir)/h5pfc H5CPP = $(bindir)/h5c++ +ACLOCAL_AMFLAGS = "-I m4" # The trace script; this is used on source files from the C library to # insert tracing macros. diff --git a/tools/h5ls/CMakeLists.txt b/tools/h5ls/CMakeLists.txt index 1d2589a..ddb0bfe 100644 --- a/tools/h5ls/CMakeLists.txt +++ b/tools/h5ls/CMakeLists.txt @@ -12,16 +12,7 @@ INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) #----------------------------------------------------------------------------- ADD_EXECUTABLE (h5ls ${HDF5_TOOLS_H5LS_SOURCE_DIR}/h5ls.c) H5_NAMING (h5ls) -IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (h5ls - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) -ENDIF (WIN32) +TARGET_WIN_PROPERTIES (h5ls) TARGET_LINK_LIBRARIES (h5ls ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) SET (H5_DEP_EXECUTABLES diff --git a/tools/h5ls/Makefile.in b/tools/h5ls/Makefile.in index 7281297..93f8e97 100644 --- a/tools/h5ls/Makefile.in +++ b/tools/h5ls/Makefile.in @@ -295,7 +295,6 @@ libdir = @libdir@ libexecdir = @libexecdir@ localedir = @localedir@ localstatedir = @localstatedir@ -lt_ECHO = @lt_ECHO@ mandir = @mandir@ mkdir_p = @mkdir_p@ oldincludedir = @oldincludedir@ @@ -344,6 +343,7 @@ H5CC_PP = $(bindir)/h5pcc H5FC = $(bindir)/h5fc H5FC_PP = $(bindir)/h5pfc H5CPP = $(bindir)/h5c++ +ACLOCAL_AMFLAGS = "-I m4" # The trace script; this is used on source files from the C library to # insert tracing macros. diff --git a/tools/h5ls/h5ls.c b/tools/h5ls/h5ls.c index 5bda0b4..b1d9ee9 100644 --- a/tools/h5ls/h5ls.c +++ b/tools/h5ls/h5ls.c @@ -34,18 +34,6 @@ #define NAME_BUF_SIZE 2048 -/* Struct to keep track of symbolic link targets visited */ -typedef struct symlink_trav_t { - size_t nalloc; - size_t nused; - struct { - H5L_type_t type; - char *file; - char *path; - } *objs; - hbool_t dangle_link; -} symlink_trav_t; - /* Struct to pass through to visitors */ typedef struct { const char *fname; /* Filename */ @@ -1842,120 +1830,6 @@ done: return 0; } /* end list_obj() */ - -/*------------------------------------------------------------------------- - * Function: symlink_visit_add - * - * Purpose: Add an symbolic link to visited data structure - * - * Return: 0 on success, -1 on failure - * - * Programmer: Neil Fortner, nfortne2@hdfgroup.org - * Adapted from trav_addr_add in h5trav.c by Quincey Koziol - * - * Date: September 5, 2008 - * - * Modified: - * Jonathan Kim - * - Renamed from elink_trav_add to symlink_visit_add for both soft and - * external links. (May 25, 2010) - * - Add type parameter to distingush between soft and external link for - * sure, which prevent from mixing up visited link when the target names - * are same between the soft and external link, as code marks with the - * target name. (May 25,2010) - * - *------------------------------------------------------------------------- - */ -static herr_t -symlink_visit_add(symlink_trav_t *visited, H5L_type_t type, const char *file, const char *path) -{ - size_t idx; /* Index of address to use */ - void *tmp_ptr; - - /* Allocate space if necessary */ - if(visited->nused == visited->nalloc) - { - visited->nalloc = MAX(1, visited->nalloc * 2); - if(NULL == (tmp_ptr = HDrealloc(visited->objs, visited->nalloc * sizeof(visited->objs[0])))) - return -1; - visited->objs = tmp_ptr; - } /* end if */ - - /* Append it */ - idx = visited->nused++; - - visited->objs[idx].type = type; - visited->objs[idx].file = NULL; - visited->objs[idx].path = NULL; - - if (type == H5L_TYPE_EXTERNAL) - { - if(NULL == (visited->objs[idx].file = HDstrdup(file))) - { - visited->nused--; - return -1; - } - } - - if(NULL == (visited->objs[idx].path = HDstrdup(path))) - { - visited->nused--; - if (visited->objs[idx].file) - HDfree (visited->objs[idx].file); - return -1; - } - - return 0; -} /* end symlink_visit_add() */ - - -/*------------------------------------------------------------------------- - * Function: symlink_is_visited - * - * Purpose: Check if an symbolic link has already been visited - * - * Return: TRUE/FALSE - * - * Programmer: Neil Fortner, nfortne2@hdfgroup.org - * Adapted from trav_addr_visited in h5trav.c by Quincey Koziol - * - * Date: September 5, 2008 - * - * Modified: - * Jonathan Kim - * - Renamed from elink_trav_visited to symlink_is_visited for both soft and - * external links. (May 25, 2010) - * - Add type parameter to distingush between soft and external link for - * sure, which prevent from mixing up visited link when the target names - * are same between the soft and external link, as code marks with the - * target name. (May 25,2010) - * - *------------------------------------------------------------------------- - */ -static hbool_t -symlink_is_visited(symlink_trav_t *visited, H5L_type_t type, const char *file, const char *path) -{ - size_t u; /* Local index variable */ - - /* Look for symlink */ - for(u = 0; u < visited->nused; u++) - { - /* Check for symlink values already in array */ - /* check type and path pair to distingush between symbolic links */ - if ((visited->objs[u].type == type) && !HDstrcmp(visited->objs[u].path, path)) - { - /* if external link, file need to be matched as well */ - if (visited->objs[u].type == H5L_TYPE_EXTERNAL) - { - if (!HDstrcmp(visited->objs[u].file, file)) - return (TRUE); - } - return (TRUE); - } - } - /* Didn't find symlink */ - return(FALSE); -} /* end symlink_is_visited() */ /*------------------------------------------------------------------------- @@ -1983,7 +1857,7 @@ list_lnk(const char *name, const H5L_info_t *linfo, void *_iter) /* init linkinfo struct */ memset(&lnk_info, 0, sizeof(h5tool_link_info_t)); - /* if verbose, make H5tools_get_link_info() display more */ + /* if verbose, make H5tools_get_symlink_info() display more */ if (verbose_g) lnk_info.opt.msg_mode=1; @@ -1992,8 +1866,8 @@ list_lnk(const char *name, const H5L_info_t *linfo, void *_iter) switch(linfo->type) { case H5L_TYPE_SOFT: - ret = H5tools_get_link_info(iter->fid, name, &lnk_info, follow_symlink_g); - /* lnk_info.trg_path is malloced in H5tools_get_link_info() + ret = H5tools_get_symlink_info(iter->fid, name, &lnk_info, follow_symlink_g); + /* lnk_info.trg_path is malloced in H5tools_get_symlink_info() * so it will be freed via buf later */ buf = lnk_info.trg_path; /* error */ @@ -2050,8 +1924,8 @@ list_lnk(const char *name, const H5L_info_t *linfo, void *_iter) const char *path; hbool_t follow_link = follow_symlink_g || follow_elink_g; - ret = H5tools_get_link_info(iter->fid, name, &lnk_info, follow_link); - /* lnk_info.trg_path is malloced in H5tools_get_link_info() + ret = H5tools_get_symlink_info(iter->fid, name, &lnk_info, follow_link); + /* lnk_info.trg_path is malloced in H5tools_get_symlink_info() * so it will be freed via buf later */ buf = lnk_info.trg_path; /* error */ diff --git a/tools/h5repack/CMakeLists.txt b/tools/h5repack/CMakeLists.txt index d767de1..be2844d 100644 --- a/tools/h5repack/CMakeLists.txt +++ b/tools/h5repack/CMakeLists.txt @@ -22,16 +22,7 @@ SET (REPACK_COMMON_SRCS ADD_EXECUTABLE (h5repack ${REPACK_COMMON_SRCS} ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_main.c) H5_NAMING (h5repack) -IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (h5repack - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) -ENDIF (WIN32) +TARGET_WIN_PROPERTIES (h5repack) TARGET_LINK_LIBRARIES (h5repack ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) SET (H5_DEP_EXECUTABLES h5repack) @@ -48,16 +39,7 @@ IF (BUILD_TESTING) # -------------------------------------------------------------------- ADD_EXECUTABLE (testh5repack_detect_szip ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testh5repack_detect_szip.c) H5_NAMING (testh5repack_detect_szip) - IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (testh5repack_detect_szip - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) - ENDIF (WIN32) + TARGET_WIN_PROPERTIES (testh5repack_detect_szip) TARGET_LINK_LIBRARIES (testh5repack_detect_szip ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) ADD_TEST (NAME testh5repack_detect_szip COMMAND $<TARGET_FILE:testh5repack_detect_szip>) @@ -76,16 +58,7 @@ IF (BUILD_TESTING) ADD_EXECUTABLE (h5repacktest ${REPACK_COMMON_SRCS} ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repacktst.c) H5_NAMING (h5repacktest) - IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (h5repacktest - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) - ENDIF (WIN32) + TARGET_WIN_PROPERTIES (h5repacktest) TARGET_LINK_LIBRARIES (h5repacktest ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) ADD_TEST (NAME h5repacktest COMMAND $<TARGET_FILE:h5repacktest>) @@ -108,6 +81,7 @@ IF (BUILD_TESTING) h5repack_hlink.h5 h5repack_layout.h5 h5repack_layouto.h5 + h5repack_layout2.h5 h5repack_named_dtypes.h5 h5repack_nbit.h5 h5repack_objs.h5 @@ -175,7 +149,7 @@ IF (BUILD_TESTING) COMMAND $<TARGET_FILE:h5diff> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out.${testfile} ) ENDIF (${testtype} STREQUAL "SKIP") - ENDMACRO (ADD_H5_TEST testname testfile testtype) + ENDMACRO (ADD_H5_TEST) MACRO (ADD_H5_CMP_TEST testname testfilter testtype resultcode resultfile) IF (${testtype} STREQUAL "SKIP") @@ -197,7 +171,53 @@ IF (BUILD_TESTING) -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) ENDIF (${testtype} STREQUAL "SKIP") - ENDMACRO (ADD_H5_CMP_TEST file) + ENDMACRO (ADD_H5_CMP_TEST) + + MACRO (ADD_H5_VERIFY_TEST testname testtype resultcode testfile testdset testfilter) + IF (${testtype} STREQUAL "SKIP") + ADD_TEST ( + NAME H5REPACK_VERIFY_LAYOUT-${testname} + COMMAND ${CMAKE_COMMAND} -E echo "SKIP -d ${testdset} -pH ${PROJECT_BINARY_DIR}/testfiles/out.${resultfile}" + ) + ELSE (${testtype} STREQUAL "SKIP") + IF (${resultcode} STREQUAL "0") + ADD_TEST ( + NAME H5REPACK_VERIFY_LAYOUT-${testname} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" + -D "TEST_ARGS:STRING=-d;${testdset};-pH;testfiles/out.${testfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -D "TEST_OUTPUT=${testfile}-v.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_FILTER:STRING=${testfilter}" + -D "TEST_REFERENCE=${testfilter}" + -P "${HDF5_RESOURCES_DIR}/grepTest.cmake" + ) + ELSE (${resultcode} STREQUAL "0") + IF (${testfilter} STREQUAL "CHUNKED") + SET (nottestfilter "(CONTIGUOUS|COMPACT)") + ENDIF (${testfilter} STREQUAL "CHUNKED") + IF (${testfilter} STREQUAL "CONTIGUOUS") + SET (nottestfilter "(CHUNK|COMPACT)") + ENDIF (${testfilter} STREQUAL "CONTIGUOUS") + IF (${testfilter} STREQUAL "COMPACT") + SET (nottestfilter "(CONTIGUOUS|CHUNK)") + ENDIF (${testfilter} STREQUAL "COMPACT") + ADD_TEST ( + NAME H5REPACK_VERIFY_LAYOUT_ALL-${testname} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" + -D "TEST_ARGS:STRING=-pH;testfiles/out.${testfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -D "TEST_OUTPUT=${testfile}-v.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_FILTER:STRING=${nottestfilter}" + -D "TEST_REFERENCE=${testfilter}" + -P "${HDF5_RESOURCES_DIR}/grepTest.cmake" + ) + ENDIF (${resultcode} STREQUAL "0") + ENDIF (${testtype} STREQUAL "SKIP") + ENDMACRO (ADD_H5_VERIFY_TEST) ############################################################################## ############################################################################## @@ -226,6 +246,7 @@ IF (BUILD_TESTING) SET (FILE14 h5repack_layouto.h5 ) # A file with an older version of the layout message (copy of test/tlayouto.h5) SET (FILE15 h5repack_named_dtypes.h5) SET (FILE16 tfamily%05d.h5) # located in common testfiles folder + SET (FILE18 h5repack_layout2.h5) SET (FILE_REF h5repack_refs.h5) SET (FILE_ATTR_REF h5repack_attr_refs.h5) @@ -523,26 +544,47 @@ ADD_H5_TEST (deflate_file ${TESTTYPE} ${arg}) ######################################################### ADD_H5_TEST (dset2_chunk_20x10 "TEST" ${FILE4} --layout=dset2:CHUNK=20x10) +ADD_H5_VERIFY_TEST (dset2_chunk_20x10 "TEST" 0 ${FILE4} dset2 CHUNKED) ADD_H5_TEST (chunk_20x10 "TEST" ${FILE4} -l CHUNK=20x10) +ADD_H5_VERIFY_TEST (chunk_20x10 "TEST" 1 ${FILE4} null CHUNKED) ADD_H5_TEST (dset2_conti "TEST" ${FILE4} -l dset2:CONTI) +ADD_H5_VERIFY_TEST (dset2_conti "TEST" 0 ${FILE4} dset2 CONTIGUOUS) ADD_H5_TEST (conti "TEST" ${FILE4} -l CONTI) +ADD_H5_VERIFY_TEST (conti "TEST" 1 ${FILE4} null CONTIGUOUS) ADD_H5_TEST (dset2_compa "TEST" ${FILE4} -l dset2:COMPA) +ADD_H5_VERIFY_TEST (dset2_compa "TEST" 0 ${FILE4} dset2 COMPACT) ADD_H5_TEST (compa "TEST" ${FILE4} -l COMPA) - +ADD_H5_VERIFY_TEST (compa "TEST" 1 ${FILE4} null COMPACT) ################################################################ # layout conversions (file has no filters) ############################################################### ADD_H5_TEST (dset_compa_conti "TEST" ${FILE4} -l dset_compact:CONTI) +ADD_H5_VERIFY_TEST (dset_compa_conti "TEST" 0 ${FILE4} dset_compact CONTIGUOUS) ADD_H5_TEST (dset_compa_chunk "TEST" ${FILE4} -l dset_compact:CHUNK=2x5) +ADD_H5_VERIFY_TEST (dset_compa_chunk "TEST" 0 ${FILE4} dset_compact CHUNKED) ADD_H5_TEST (dset_compa_compa "TEST" ${FILE4} -l dset_compact:COMPA) +ADD_H5_VERIFY_TEST (dset_compa_compa "TEST" 0 ${FILE4} dset_compact COMPACT) ADD_H5_TEST (dset_conti_compa "TEST" ${FILE4} -l dset_contiguous:COMPA) +ADD_H5_VERIFY_TEST (dset_conti_compa "TEST" 0 ${FILE4} dset_contiguous COMPACT) ADD_H5_TEST (dset_conti_chunk "TEST" ${FILE4} -l dset_contiguous:CHUNK=3x6) +ADD_H5_VERIFY_TEST (dset_conti_chunk "TEST" 0 ${FILE4} dset_contiguous CHUNKED) ADD_H5_TEST (dset_conti_conti "TEST" ${FILE4} -l dset_contiguous:CONTI) +ADD_H5_VERIFY_TEST (dset_conti_conti "TEST" 0 ${FILE4} dset_contiguous CONTIGUOUS) ADD_H5_TEST (chunk_compa "TEST" ${FILE4} -l dset_chunk:COMPA) +ADD_H5_VERIFY_TEST (chunk_compa "TEST" 0 ${FILE4} dset_chunk COMPACT) ADD_H5_TEST (chunk_conti "TEST" ${FILE4} -l dset_chunk:CONTI) +ADD_H5_VERIFY_TEST (chunk_conti "TEST" 0 ${FILE4} dset_chunk CONTIGUOUS) ADD_H5_TEST (chunk_18x13 "TEST" ${FILE4} -l dset_chunk:CHUNK=18x13) +ADD_H5_VERIFY_TEST (chunk_18x13 "TEST" 0 ${FILE4} dset_chunk CHUNKED) + +# test convert small size dataset ( < 1k) to compact layout without -m +ADD_H5_TEST (contig_small_compa "TEST" ${FILE18} -l contig_small:COMPA) +ADD_H5_VERIFY_TEST (contig_small_compa "TEST" 0 ${FILE18} contig_small COMPACT) + +ADD_H5_TEST (contig_small_fixed_compa "TEST" ${FILE18} -l chunked_small_fixed:COMPA) +ADD_H5_VERIFY_TEST (contig_small_fixed_compa "TEST" 0 ${FILE18} chunked_small_fixed COMPACT) # Native option # Do not use FILE1, as the named dtype will be converted to native, and h5diff will @@ -558,6 +600,7 @@ IF (NOT USE_FILTER_DEFLATE) SET (TESTTYPE "SKIP") ENDIF (NOT USE_FILTER_DEFLATE) ADD_H5_TEST (layout_long_switches ${TESTTYPE} ${arg}) +ADD_H5_VERIFY_TEST (layout_long_switches ${TESTTYPE} 1 ${FILE4} null CHUNKED) # latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters) SET (arg ${FILE4} -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]) @@ -566,6 +609,7 @@ IF (NOT USE_FILTER_DEFLATE) SET (TESTTYPE "SKIP") ENDIF (NOT USE_FILTER_DEFLATE) ADD_H5_TEST (layout_short_switches ${TESTTYPE} ${arg}) +ADD_H5_VERIFY_TEST (layout_short_switches ${TESTTYPE} 1 ${FILE4} null CHUNKED) # several global filters SET (arg ${FILE4} --filter GZIP=1 --filter SHUF) diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in index 9fef88b..23f5844 100644 --- a/tools/h5repack/Makefile.in +++ b/tools/h5repack/Makefile.in @@ -315,7 +315,6 @@ libdir = @libdir@ libexecdir = @libexecdir@ localedir = @localedir@ localstatedir = @localstatedir@ -lt_ECHO = @lt_ECHO@ mandir = @mandir@ mkdir_p = @mkdir_p@ oldincludedir = @oldincludedir@ @@ -364,6 +363,7 @@ H5CC_PP = $(bindir)/h5pcc H5FC = $(bindir)/h5fc H5FC_PP = $(bindir)/h5pfc H5CPP = $(bindir)/h5c++ +ACLOCAL_AMFLAGS = "-I m4" # The trace script; this is used on source files from the C library to # insert tracing macros. diff --git a/tools/h5repack/h5repack.sh.in b/tools/h5repack/h5repack.sh.in index d889b55..5a60227 100755 --- a/tools/h5repack/h5repack.sh.in +++ b/tools/h5repack/h5repack.sh.in @@ -35,7 +35,12 @@ H5REPACK=h5repack # The tool name H5REPACK_BIN=`pwd`/$H5REPACK # The path of the tool binary H5DIFF=../h5diff/h5diff # The h5diff tool name -H5DIFF_BIN=`pwd`/$H5DIFF # The path of the h5diff tool binary +H5DIFF_BIN=`pwd`/$H5DIFF # The path of the h5diff tool binary + +H5DUMP=../h5dump/h5dump # The h5dump tool name +H5DUMP_BIN=`pwd`/$H5DUMP # The path of the h5dump tool binary + +GREP='grep' H5DETECTSZIP=testh5repack_detect_szip H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP @@ -59,6 +64,7 @@ FILE14=h5repack_layouto.h5 # A file with an older version of the layout mes # (copy of test/tlayouto.h5) FILE15=h5repack_named_dtypes.h5 FILE16=tfamily%05d.h5 # located in common testfiles folder +FILE18=h5repack_layout2.h5 FILE_REF=h5repack_refs.h5 FILE_ATTR_REF=h5repack_attr_refs.h5 @@ -115,8 +121,21 @@ DIFFTEST() # Call h5repack # + + +# call TOOLTEST_MAIN and delete $output file TOOLTEST() { + echo $@ + TOOLTEST_MAIN $@ + path=`pwd` + outfile=$path/out.$1 + rm -f $outfile +} + +# TOOLTEST main function, doesn't delete $output file +TOOLTEST_MAIN() +{ # Run test. TESTING $H5REPACK $@ @@ -133,7 +152,98 @@ TOOLTEST() echo " PASSED" DIFFTEST $infile $outfile fi +} + +#------------------------------------------ +# Verifying layouts of a dataset +VERIFY_LAYOUT_DSET() +{ + path=`pwd` + outfile=$path/out.$1 + layoutfile=$path/layout.$1 + dset=$2 + expectlayout=$3 + + #--------------------------------- + # check the layout from a dataset + VERIFY "Layout" + $H5DUMP_BIN -d $dset -pH $outfile > $layoutfile + $GREP $expectlayout $layoutfile > /dev/null + if [ $? -eq 0 ]; then + echo " PASSED" + else + echo " FAILED" + fi + + # clean up tmp files rm -f $outfile + rm -f $layoutfile +} + +#---------------------------------------- +# Verifying layouts from entire file +VERIFY_LAYOUT_ALL() +{ + path=`pwd` + outfile=$path/out.$1 + layoutfile=$path/layout.$1 + expectlayout=$2 + + #--------------------------------- + # check the layout from a dataset + # check if the other layouts still exsit + VERIFY "Layout " + # if CONTIGUOUS + if [ $expectlayout = "CONTIGUOUS" ]; then + $H5DUMP_BIN -pH $outfile > $layoutfile + $GREP "COMPACT" $layoutfile > /dev/null + if [ $? -eq 0 ]; then + echo " FAILED" + else + $GREP "CHUNKED" $layoutfile > /dev/null + if [ $? -eq 0 ]; then + echo " FAILED" + else + echo " PASSED" + fi + fi + else + # if COMPACT + if [ $expectlayout = "COMPACT" ]; then + $H5DUMP_BIN -pH $outfile > $layoutfile + $GREP "CHUNKED" $layoutfile > /dev/null + if [ $? -eq 0 ]; then + echo " FAILED" + else + $GREP "CONTIGUOUS" $layoutfile > /dev/null + if [ $? -eq 0 ]; then + echo " FAILED" + else + echo " PASSED" + fi + fi + else + # if CHUNKED + if [ $expectlayout = "CHUNKED" ]; then + $H5DUMP_BIN -pH $outfile > $layoutfile + $GREP "CONTIGUOUS" $layoutfile > /dev/null + if [ $? -eq 0 ]; then + echo " FAILED" + else + $GREP "COMPACT" $layoutfile > /dev/null + if [ $? -eq 0 ]; then + echo " FAILED" + else + echo " PASSED" + fi + fi + fi + fi + fi + + # clean up tmp files + rm -f $outfile + rm -f $layoutfile } # same as TOOLTEST, but it uses the old syntax -i input_file -o output_file @@ -494,32 +604,64 @@ else TOOLTEST $arg fi - ######################################################### # layout options (these files have no filters) ######################################################### +TOOLTEST_MAIN $FILE4 --layout dset2:CHUNK=20x10 +VERIFY_LAYOUT_DSET $FILE4 dset2 CHUNKED -TOOLTEST $FILE4 --layout=dset2:CHUNK=20x10 -TOOLTEST $FILE4 -l CHUNK=20x10 -TOOLTEST $FILE4 -l dset2:CONTI -TOOLTEST $FILE4 -l CONTI -TOOLTEST $FILE4 -l dset2:COMPA -TOOLTEST $FILE4 -l COMPA +TOOLTEST_MAIN $FILE4 -l CHUNK=20x10 +VERIFY_LAYOUT_ALL $FILE4 CHUNKED +TOOLTEST_MAIN $FILE4 -l dset2:CONTI +VERIFY_LAYOUT_DSET $FILE4 dset2 CONTIGUOUS + +TOOLTEST_MAIN $FILE4 -l CONTI +VERIFY_LAYOUT_ALL $FILE4 CONTIGUOUS + +TOOLTEST_MAIN $FILE4 -l dset2:COMPA +VERIFY_LAYOUT_DSET $FILE4 dset2 COMPACT + +TOOLTEST_MAIN $FILE4 -l COMPA +VERIFY_LAYOUT_ALL $FILE4 COMPACT ################################################################ # layout conversions (file has no filters) ############################################################### -TOOLTEST $FILE4 -l dset_compact:CONTI -TOOLTEST $FILE4 -l dset_compact:CHUNK=2x5 -TOOLTEST $FILE4 -l dset_compact:COMPA -TOOLTEST $FILE4 -l dset_contiguous:COMPA -TOOLTEST $FILE4 -l dset_contiguous:CHUNK=3x6 -TOOLTEST $FILE4 -l dset_contiguous:CONTI -TOOLTEST $FILE4 -l dset_chunk:COMPA -TOOLTEST $FILE4 -l dset_chunk:CONTI -TOOLTEST $FILE4 -l dset_chunk:CHUNK=18x13 +TOOLTEST_MAIN $FILE4 -l dset_compact:CONTI +VERIFY_LAYOUT_DSET $FILE4 dset_compact CONTIGUOUS + +TOOLTEST_MAIN $FILE4 -l dset_compact:CHUNK=2x5 +VERIFY_LAYOUT_DSET $FILE4 dset_compact CHUNKED + +TOOLTEST_MAIN $FILE4 -l dset_compact:COMPA +VERIFY_LAYOUT_DSET $FILE4 dset_compact COMPACT + +TOOLTEST_MAIN $FILE4 -l dset_contiguous:COMPA +VERIFY_LAYOUT_DSET $FILE4 dset_contiguous COMPACT + +TOOLTEST_MAIN $FILE4 -l dset_contiguous:CHUNK=3x6 +VERIFY_LAYOUT_DSET $FILE4 dset_contiguous CHUNKED + +TOOLTEST_MAIN $FILE4 -l dset_contiguous:CONTI +VERIFY_LAYOUT_DSET $FILE4 dset_contiguous CONTIGUOUS + +TOOLTEST_MAIN $FILE4 -l dset_chunk:COMPA +VERIFY_LAYOUT_DSET $FILE4 dset_chunk COMPACT + +TOOLTEST_MAIN $FILE4 -l dset_chunk:CONTI +VERIFY_LAYOUT_DSET $FILE4 dset_chunk CONTIGUOUS + +TOOLTEST_MAIN $FILE4 -l dset_chunk:CHUNK=18x13 +VERIFY_LAYOUT_DSET $FILE4 dset_chunk CHUNKED + +# test convert small size dataset ( < 1k) to compact layout without -m +TOOLTEST_MAIN $FILE18 -l contig_small:COMPA +VERIFY_LAYOUT_DSET $FILE18 contig_small COMPACT + +TOOLTEST_MAIN $FILE18 -l chunked_small_fixed:COMPA +VERIFY_LAYOUT_DSET $FILE18 chunked_small_fixed COMPACT # Native option # Do not use FILE1, as the named dtype will be converted to native, and h5diff will @@ -533,7 +675,8 @@ arg="$FILE4 --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST_MAIN $arg + VERIFY_LAYOUT_ALL $FILE4 CHUNKED fi # latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters) @@ -541,7 +684,8 @@ arg="$FILE4 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]" if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST $arg + TOOLTEST_MAIN $arg + VERIFY_LAYOUT_ALL $FILE4 CHUNKED fi # several global filters diff --git a/tools/h5repack/h5repack_copy.c b/tools/h5repack/h5repack_copy.c index b736c22..6c47cfb 100644 --- a/tools/h5repack/h5repack_copy.c +++ b/tools/h5repack/h5repack_copy.c @@ -687,14 +687,11 @@ int do_copy_objects(hid_t fidin, /* check if filters were requested for individual objects */ for (u = 0; u < options->op_tbl->nelems; u++) { - int k; if (strcmp(travt->objs[i].name, options->op_tbl->objs[u].path) == 0) { - for (k = 0; k < options->op_tbl->objs[u].nfilters; k++) { if (options->op_tbl->objs[u].filter->filtn > 0) { req_filter = 1; } - } } } @@ -789,9 +786,15 @@ int do_copy_objects(hid_t fidin, /* get the storage size of the input dataset */ dsize_in=H5Dget_storage_size(dset_in); - /* check for datasets too small */ - if (nelmts*msize < options->min_comp ) - apply_s=0; + /* check for small size datasets (less than 1k) except + * changing to COMPACT. For the reference, COMPACT is limited + * by size 64K by library. + */ + if (options->layout_g != H5D_COMPACT) + { + if ( nelmts*msize < options->min_comp ) + apply_s=0; + } /* apply the filter */ if (apply_s) diff --git a/tools/h5repack/h5repacktst.c b/tools/h5repack/h5repacktst.c index e329082..0567615 100644 --- a/tools/h5repack/h5repacktst.c +++ b/tools/h5repack/h5repacktst.c @@ -76,6 +76,9 @@ #define FNAME17 "h5repack_named_dtypes.h5" #define FNAME17OUT "h5repack_named_dtypes_out.h5" +#define FNAME18 "h5repack_layout2.h5" +#define FNAME18OUT "h5repack_layout2_out.h5" + #define FNAME_UB "ublock.bin" /* obj and region references */ @@ -120,6 +123,7 @@ static int make_attributes(hid_t loc_id); static int make_hlinks(hid_t loc_id); static int make_early(void); static int make_layout(hid_t loc_id); +static int make_layout2(hid_t loc_id); #ifdef H5_HAVE_FILTER_SZIP static int make_szip(hid_t loc_id); #endif /* H5_HAVE_FILTER_SZIP */ @@ -1692,6 +1696,19 @@ int make_testfiles(void) return -1; /*------------------------------------------------------------------------- + * create a file for layout conversion test + *------------------------------------------------------------------------- + */ + if((fid = H5Fcreate(FNAME18, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) + return -1; + + if(make_layout2(fid) < 0) + goto out; + + if(H5Fclose(fid) < 0) + return -1; + + /*------------------------------------------------------------------------- * create a file for the H5D_ALLOC_TIME_EARLY test *------------------------------------------------------------------------- */ @@ -2983,6 +3000,78 @@ out: } /*------------------------------------------------------------------------- + * Function: make_layout2 + * + * Purpose: create datasets with contiguous and chunked layouts: + * + * contig_small: < 1k, fixed dims datspace + * chunked_small_fixed: < 1k, fixed dims dataspace + * + *------------------------------------------------------------------------- + */ +#define S_DIM1 4 +#define S_DIM2 10 +#define CONTIG_S "contig_small" +#define CHUNKED_S_FIX "chunked_small_fixed" + +static +int make_layout2(hid_t loc_id) +{ + + hid_t contig_dcpl = -1; /* dataset creation property list */ + hid_t chunked_dcpl = -1; /* dataset creation property list */ + + int i, j, n; /* Local index variables */ + int ret_value = -1; /* Return value */ + hid_t s_sid = -1; /* dataspace ID */ + + hsize_t s_dims[RANK] = {S_DIM1,S_DIM2}; /* Dataspace (< 1 k) */ + hsize_t chunk_dims[RANK] = {S_DIM1/2, S_DIM2/2}; /* Dimension sizes for chunks */ + + int s_buf[S_DIM1][S_DIM2]; /* Temporary buffer */ + + for(i = n = 0; i < S_DIM1; i++) { + for (j = 0; j < S_DIM2; j++) { + s_buf[i][j] = n++; + } + } + + /* Create dataspaces */ + if((s_sid = H5Screate_simple(RANK, s_dims, NULL)) < 0) + goto out; + + /* Create contiguous datasets */ + if((contig_dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + if(H5Pset_layout(contig_dcpl, H5D_CONTIGUOUS) < 0) + goto out; + if(make_dset(loc_id, CONTIG_S, s_sid, contig_dcpl, s_buf) < 0) + goto out; + + /* Create chunked datasets */ + if((chunked_dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto out; + if(H5Pset_chunk(chunked_dcpl, RANK, chunk_dims) < 0) + goto out; + if(make_dset(loc_id, CHUNKED_S_FIX, s_sid, chunked_dcpl, s_buf) < 0) + goto out; + + ret_value = 0; + +out: + H5E_BEGIN_TRY { + H5Pclose(contig_dcpl); + H5Pclose(chunked_dcpl); + + H5Sclose(s_sid); + + } H5E_END_TRY; + + return(ret_value); + +} /* make_layout2() */ + +/*------------------------------------------------------------------------- * Function: make a file with an integer dataset with a fill value * * Purpose: test copy of fill values diff --git a/tools/h5repack/testfiles/h5repack_layout2.h5 b/tools/h5repack/testfiles/h5repack_layout2.h5 Binary files differnew file mode 100644 index 0000000..6e77e41 --- /dev/null +++ b/tools/h5repack/testfiles/h5repack_layout2.h5 diff --git a/tools/h5stat/CMakeLists.txt b/tools/h5stat/CMakeLists.txt index b900afb..1640479 100644 --- a/tools/h5stat/CMakeLists.txt +++ b/tools/h5stat/CMakeLists.txt @@ -12,16 +12,7 @@ INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) # -------------------------------------------------------------------- ADD_EXECUTABLE (h5stat ${HDF5_TOOLS_H5STAT_SOURCE_DIR}/h5stat.c) H5_NAMING (h5stat) -IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (h5stat - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) -ENDIF (WIN32) +TARGET_WIN_PROPERTIES (h5stat) TARGET_LINK_LIBRARIES (h5stat ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) SET (H5_DEP_EXECUTABLES h5stat) @@ -39,14 +30,7 @@ IF (BUILD_TESTING) IF (HDF5_BUILD_GENERATORS AND NOT BUILD_SHARED_LIBS) ADD_EXECUTABLE (h5stat_gentest ${HDF5_TOOLS_H5STAT_SOURCE_DIR}/h5stat_gentest.c) H5_NAMING (h5stat_gentest) - IF (WIN32) - IF (MSVC) - SET_TARGET_PROPERTIES (h5stat_gentest - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (MSVC) - ENDIF (WIN32) + TARGET_WIN_PROPERTIES (h5stat_gentest) TARGET_LINK_LIBRARIES (h5stat_gentest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) #ADD_TEST (NAME h5stat_gentest COMMAND $<TARGET_FILE:h5stat_gentest>) diff --git a/tools/h5stat/Makefile.in b/tools/h5stat/Makefile.in index 35be805..2e259c4 100644 --- a/tools/h5stat/Makefile.in +++ b/tools/h5stat/Makefile.in @@ -324,7 +324,6 @@ libdir = @libdir@ libexecdir = @libexecdir@ localedir = @localedir@ localstatedir = @localstatedir@ -lt_ECHO = @lt_ECHO@ mandir = @mandir@ mkdir_p = @mkdir_p@ oldincludedir = @oldincludedir@ @@ -373,6 +372,7 @@ H5CC_PP = $(bindir)/h5pcc H5FC = $(bindir)/h5fc H5FC_PP = $(bindir)/h5pfc H5CPP = $(bindir)/h5c++ +ACLOCAL_AMFLAGS = "-I m4" # The trace script; this is used on source files from the C library to # insert tracing macros. diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in index fe7fc52..020dab5 100644 --- a/tools/lib/Makefile.in +++ b/tools/lib/Makefile.in @@ -294,7 +294,6 @@ libdir = @libdir@ libexecdir = @libexecdir@ localedir = @localedir@ localstatedir = @localstatedir@ -lt_ECHO = @lt_ECHO@ mandir = @mandir@ mkdir_p = @mkdir_p@ oldincludedir = @oldincludedir@ @@ -343,6 +342,7 @@ H5CC_PP = $(bindir)/h5pcc H5FC = $(bindir)/h5fc H5FC_PP = $(bindir)/h5pfc H5CPP = $(bindir)/h5c++ +ACLOCAL_AMFLAGS = "-I m4" # The trace script; this is used on source files from the C library to # insert tracing macros. diff --git a/tools/lib/h5diff.c b/tools/lib/h5diff.c index 5d2343a..d462b45 100644 --- a/tools/lib/h5diff.c +++ b/tools/lib/h5diff.c @@ -219,19 +219,374 @@ static int is_valid_options(diff_opt_t *options) } out: - if (!ret) + + return ret; +} + +/*------------------------------------------------------------------------- + * Function: is_exclude_path + * + * Purpose: check if 'paths' are part of exclude path list + * + * Return: + * 1 - excluded path + * 0 - not excluded path + * + * Programmer: Jonathan Kim + * Date: Aug 23, 2010 + *------------------------------------------------------------------------*/ +static int is_exclude_path (trav_path_t * paths, diff_opt_t *options) +{ + struct exclude_path_list * exclude_path_ptr; + int ret_cmp; + int ret = 0; + int len_grp; + + /* check if exclude path option is given */ + if (!options->exclude_path) + goto out; + + /* assign to local exclude list pointer */ + exclude_path_ptr = options->exclude; + + /* search objects in exclude list */ + while (NULL != exclude_path_ptr) { -#ifdef H5_HAVE_PARALLEL - if(g_Parallel) - /* Let tasks know that they won't be needed */ - phdiff_dismiss_workers(); -#endif + /* if given object is group, exclude its members as well */ + if (exclude_path_ptr->obj_type == H5TRAV_TYPE_GROUP) + { + ret_cmp = HDstrncmp(exclude_path_ptr->obj_path, paths->path, + strlen(exclude_path_ptr->obj_path)); + if (ret_cmp == 0) + { + /* check if given path belong to an excluding group, if so + * exclude it as well. + * This verifies if “/grp1/dset1” is only under “/grp1”, but + * not under “/grp1xxx/” group. + */ + len_grp = HDstrlen(exclude_path_ptr->obj_path); + if (paths->path[len_grp] == '/') + { + /* belong to excluded group! */ + ret = 1; + break; /* while */ + } + } + } + /* exclude target is not group, just exclude the object */ + else + { + ret_cmp = HDstrcmp(exclude_path_ptr->obj_path, paths->path); + if (ret_cmp == 0) + { + /* excluded non-group object */ + ret = 1; + /* assign type as scan progress, which is sufficient to + * determine type for excluding groups from the above if. */ + exclude_path_ptr->obj_type = paths->type; + break; /* while */ + } + } + exclude_path_ptr = exclude_path_ptr->next; } - return ret; +out: + return ret; +} + + +/*------------------------------------------------------------------------- + * Function: free_exclude_path_list + * + * Purpose: free exclud object list from diff options + * + * Programmer: Jonathan Kim + * Date: Aug 23, 2010 + *------------------------------------------------------------------------*/ +static void free_exclude_path_list(diff_opt_t *options) +{ + struct exclude_path_list * curr = options->exclude; + struct exclude_path_list * next; + + while (NULL != curr) + { + next = curr->next; + HDfree(curr); + curr = next; + } +} + +/*------------------------------------------------------------------------- + * Function: build_match_list + * + * Purpose: get list of matching path_name from info1 and info2 + * + * Note: + * Find common objects; the algorithm used for this search is the + * cosequential match algorithm and is described in + * Folk, Michael; Zoellick, Bill. (1992). File Structures. Addison-Wesley. + * Moved out from diff_match() to make code more flexible. + * + * Parameter: + * table_out [OUT] : return the list + * + * Programmer: Jonathan Kim + * + * Date: Aug 18, 2010 + *------------------------------------------------------------------------*/ +static void build_match_list (const char *objname1, trav_info_t *info1, const char *objname2, trav_info_t *info2, trav_table_t ** table_out, diff_opt_t *options) +{ + unsigned i; + size_t curr1 = 0; + size_t curr2 = 0; + unsigned infile[2]; + char * path1_lp; + char * path2_lp; + int path1_offset = 0; + int path2_offset = 0; + int cmp; + trav_table_t *table; + + /* init */ + trav_table_init( &table ); + + /* + * This is necessary for the case that given objects are group and + * have different names (ex: obj1 is /grp1 and obj2 is /grp5). + * All the objects belong to given groups are the cadidates. + * So prepare to compare paths without the group names. + */ + /* if obj1 is not root */ + if (HDstrcmp (objname1,"/") != 0) + path1_offset = HDstrlen(objname1); + /* if obj2 is not root */ + if (HDstrcmp (objname2,"/") != 0) + path2_offset = HDstrlen(objname2); + + /*-------------------------------------------------- + * build the list + */ + while(curr1 < info1->nused && curr2 < info2->nused) + { + + path1_lp = (info1->paths[curr1].path) + path1_offset; + path2_lp = (info2->paths[curr2].path) + path2_offset; + + /* criteria is string compare */ + cmp = HDstrcmp(path1_lp, path2_lp); + + if(cmp == 0) { + if(!is_exclude_path(&(info1->paths[curr1]), options)) + { + infile[0] = 1; + infile[1] = 1; + trav_table_addflags(infile, path1_lp, info1->paths[curr1].type, table); + } + curr1++; + curr2++; + } /* end if */ + else if(cmp < 0) + { + if(!is_exclude_path(&(info1->paths[curr1]), options)) + { + infile[0] = 1; + infile[1] = 0; + trav_table_addflags(infile, path1_lp, info1->paths[curr1].type, table); + } + curr1++; + } /* end else-if */ + else + { + if (!is_exclude_path(&(info2->paths[curr2]), options)) + { + infile[0] = 0; + infile[1] = 1; + trav_table_addflags(infile, path2_lp, info2->paths[curr2].type, table); + } + curr2++; + } /* end else */ + } /* end while */ + + /* list1 did not end */ + infile[0] = 1; + infile[1] = 0; + while(curr1 < info1->nused) + { + if(!is_exclude_path(&(info1->paths[curr1]), options)) + { + path1_lp = (info1->paths[curr1].path) + path1_offset; + trav_table_addflags(infile, path1_lp, info1->paths[curr1].type, table); + } + curr1++; + } /* end while */ + + /* list2 did not end */ + infile[0] = 0; + infile[1] = 1; + while(curr2 < info2->nused) + { + if (!is_exclude_path(&(info2->paths[curr2]), options)) + { + path2_lp = (info2->paths[curr2].path) + path2_offset; + trav_table_addflags(infile, path2_lp, info2->paths[curr2].type, table); + } + curr2++; + } /* end while */ + + free_exclude_path_list (options); + /*------------------------------------------------------ + * print the list + */ + if(options->m_verbose) + { + parallel_print("\n"); + /* if given objects is group under root */ + if (HDstrcmp (objname1,"/") || HDstrcmp (objname2,"/")) + parallel_print("group1 group2\n"); + else + parallel_print("file1 file2\n"); + parallel_print("---------------------------------------\n"); + for(i = 0; i < table->nobjs; i++) + { + char c1, c2; + c1 = (table->objs[i].flags[0]) ? 'x' : ' '; + c2 = (table->objs[i].flags[1]) ? 'x' : ' '; + parallel_print("%5c %6c %-15s\n", c1, c2, table->objs[i].name); + } /* end for */ + parallel_print ("\n"); + } /* end if */ + + *table_out = table; } +/*------------------------------------------------------------------------- + * Function: trav_grp_objs + * + * Purpose: + * Call back function from h5trav_visit(). + * + * Programmer: Jonathan Kim + * + * Date: Aug 16, 2010 + *------------------------------------------------------------------------*/ +static herr_t trav_grp_objs(const char *path, const H5O_info_t *oinfo, + const char *already_visited, void *udata) +{ + trav_info_visit_obj(path, oinfo, already_visited, udata); + + return 0; +} + +/*------------------------------------------------------------------------- + * Function: trav_grp_symlinks + * + * Purpose: + * Call back function from h5trav_visit(). + * Track and extra checkings while visiting all symbolic-links. + * + * Programmer: Jonathan Kim + * + * Date: Aug 16, 2010 + *------------------------------------------------------------------------*/ +static herr_t trav_grp_symlinks(const char *path, const H5L_info_t *linfo, + void *udata) +{ + trav_info_t *tinfo = (trav_info_t *)udata; + diff_opt_t *opts = (diff_opt_t *)tinfo->opts; + int ret; + h5tool_link_info_t lnk_info; + const char *ext_fname; + const char *ext_path; + + /* init linkinfo struct */ + memset(&lnk_info, 0, sizeof(h5tool_link_info_t)); + + if (!opts->follow_links) + { + trav_info_visit_lnk(path, linfo, tinfo); + goto done; + } + + switch(linfo->type) + { + case H5L_TYPE_SOFT: + ret = H5tools_get_symlink_info(tinfo->fid, path, &lnk_info, opts->follow_links); + /* error */ + if (ret < 0) + goto done; + /* no dangling link option given and detect dangling link */ + else if (ret == 0) + { + tinfo->symlink_visited.dangle_link = TRUE; + trav_info_visit_lnk(path, linfo, tinfo); + if (opts->no_dangle_links) + opts->err_stat = 1; /* make dgangling link is error */ + goto done; + } + + /* check if already visit the target object */ + if(symlink_is_visited( &(tinfo->symlink_visited), linfo->type, NULL, lnk_info.trg_path)) + goto done; + + /* add this link as visited link */ + if(symlink_visit_add( &(tinfo->symlink_visited), linfo->type, NULL, lnk_info.trg_path) < 0) + goto done; + + if(h5trav_visit(tinfo->fid, path, TRUE, TRUE, + trav_grp_objs,trav_grp_symlinks, tinfo) < 0) + { + parallel_print("Error: Could not get file contents\n"); + opts->err_stat = 1; + goto done; + } + break; + + case H5L_TYPE_EXTERNAL: + ret = H5tools_get_symlink_info(tinfo->fid, path, &lnk_info, opts->follow_links); + /* error */ + if (ret < 0) + goto done; + /* no dangling link option given and detect dangling link */ + else if (ret == 0) + { + tinfo->symlink_visited.dangle_link = TRUE; + trav_info_visit_lnk(path, linfo, tinfo); + if (opts->no_dangle_links) + opts->err_stat = 1; /* make dgangling link is error */ + goto done; + } + + if(H5Lunpack_elink_val(lnk_info.trg_path, linfo->u.val_size, NULL, &ext_fname, &ext_path) < 0) + goto done; + + /* check if already visit the target object */ + if(symlink_is_visited( &(tinfo->symlink_visited), linfo->type, ext_fname, ext_path)) + goto done; + + /* add this link as visited link */ + if(symlink_visit_add( &(tinfo->symlink_visited), linfo->type, ext_fname, ext_path) < 0) + goto done; + + if(h5trav_visit(tinfo->fid, path, TRUE, TRUE, + trav_grp_objs,trav_grp_symlinks, tinfo) < 0) + { + parallel_print("Error: Could not get file contents\n"); + opts->err_stat = 1; + goto done; + } + break; + default: + ; + break; + } /* end of switch */ + +done: + if (lnk_info.trg_path) + HDfree(lnk_info.trg_path); + return 0; +} + /*------------------------------------------------------------------------- * Function: h5diff @@ -253,14 +608,42 @@ hsize_t h5diff(const char *fname1, const char *objname2, diff_opt_t *options) { - trav_info_t *info1=NULL; - trav_info_t *info2=NULL; hid_t file1_id = (-1); hid_t file2_id = (-1); - char filenames[2][1024]; + char filenames[2][MAX_FILENAME]; hsize_t nfound = 0; - - HDmemset(filenames, 0, 1024 * 2); + int i; + //int i1, i2; + int l_ret; + const char * obj1fullname = NULL; + const char * obj2fullname = NULL; + /* init to group type */ + h5trav_type_t obj1type = H5TRAV_TYPE_GROUP; + h5trav_type_t obj2type = H5TRAV_TYPE_GROUP; + /* for single object */ + H5O_info_t oinfo1, oinfo2; /* object info */ + trav_info_t *info1_obj = NULL; + trav_info_t *info2_obj = NULL; + /* for group object */ + trav_info_t *info1_grp = NULL; + trav_info_t *info2_grp = NULL; + /* local pointer */ + trav_info_t *info1_lp; + trav_info_t *info2_lp; + /* link info from specified object */ + H5L_info_t src_linfo1; + H5L_info_t src_linfo2; + /* link info from member object */ + h5tool_link_info_t trg_linfo1; + h5tool_link_info_t trg_linfo2; + /* list for common objects */ + trav_table_t *match_list = NULL; + + /* init filenames */ + HDmemset(filenames, 0, MAX_FILENAME * 2); + /* init link info struct */ + HDmemset(&trg_linfo1, 0, sizeof(h5tool_link_info_t)); + HDmemset(&trg_linfo2, 0, sizeof(h5tool_link_info_t)); /*------------------------------------------------------------------------- * check invalid combination of options @@ -277,35 +660,19 @@ hsize_t h5diff(const char *fname1, H5E_BEGIN_TRY { /* open file 1 */ - if((file1_id = h5tools_fopen(fname1, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, (size_t)0)) < 0) { - parallel_print("h5diff: <%s>: unable to open file\n", fname1); options->err_stat = 1; - -#ifdef H5_HAVE_PARALLEL - if(g_Parallel) - /* Let tasks know that they won't be needed */ - phdiff_dismiss_workers(); -#endif goto out; } /* end if */ /* open file 2 */ - if((file2_id = h5tools_fopen(fname2, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, (size_t)0)) < 0) { - parallel_print("h5diff: <%s>: unable to open file\n", fname2); options->err_stat = 1; - -#ifdef H5_HAVE_PARALLEL - if(g_Parallel) - /* Let tasks know that they won't be needed */ - phdiff_dismiss_workers(); -#endif goto out; } /* end if */ /* enable error reporting */ @@ -315,61 +682,274 @@ hsize_t h5diff(const char *fname1, * Initialize the info structs *------------------------------------------------------------------------- */ - trav_info_init(&info1); - trav_info_init(&info2); - - /*------------------------------------------------------------------------- - * get the list of objects in the files - *------------------------------------------------------------------------- - */ - if(h5trav_getinfo(file1_id, info1) < 0 || h5trav_getinfo(file2_id, info2) < 0) { - parallel_print("Error: Could not get file contents\n"); - options->err_stat = 1; -#ifdef H5_HAVE_PARALLEL - if(g_Parallel) - /* Let tasks know that they won't be needed */ - phdiff_dismiss_workers(); -#endif - goto out; - } /* end if */ + trav_info_init(fname1, file1_id, &info1_obj); + trav_info_init(fname2, file2_id, &info2_obj); - /*------------------------------------------------------------------------- - * object name was supplied - *------------------------------------------------------------------------- - */ - if( objname1 ) + /* if any object is specified */ + if (objname1) { -#ifdef H5_HAVE_PARALLEL - if(g_Parallel) - /* Let tasks know that they won't be needed */ - phdiff_dismiss_workers(); -#endif - assert(objname2); - options->cmn_objs = 1; /* eliminate warning */ - nfound = diff_compare(file1_id, - fname1, - objname1, - info1, - file2_id, - fname2, - objname2, - info2, - options); - } /* end if */ - /*------------------------------------------------------------------------- - * compare all - *------------------------------------------------------------------------- - */ + /* malloc 2 more for "/" and end-of-line */ + obj1fullname = (char*)HDcalloc(HDstrlen(objname1) + 2, sizeof(char)); + obj2fullname = (char*)HDcalloc(HDstrlen(objname2) + 2, sizeof(char)); + + /* make the given object1 fullpath, start with "/" */ + if (HDstrncmp(objname1, "/", 1)) + { + HDstrcpy(obj1fullname, "/"); + HDstrcat(obj1fullname, objname1); + } + else + HDstrcpy(obj1fullname, objname1); + + /* make the given object2 fullpath, start with "/" */ + if (HDstrncmp(objname2, "/", 1)) + { + HDstrcpy(obj2fullname, "/"); + HDstrcat(obj2fullname, objname2); + } + else + HDstrcpy(obj2fullname, objname2); + + /*---------------------------------------------------------- + * check if obj1 is root, group, single object or symlink + */ + if(!HDstrcmp(obj1fullname, "/")) + { + obj1type = H5TRAV_TYPE_GROUP; + } + else + { + /* check if link itself exist */ + if(H5Lexists(file1_id, obj1fullname, H5P_DEFAULT) <= 0) + { + parallel_print ("Object <%s> could not be found in <%s>\n", obj1fullname, fname1); + options->err_stat = 1; + goto out; + } + /* get info from link */ + if(H5Lget_info(file1_id, obj1fullname, &src_linfo1, H5P_DEFAULT) < 0) + { + parallel_print("Unable to get link info from <%s>\n", obj1fullname); + goto out; + } + + info1_lp = info1_obj; + + /* + * check the type of specified path for hard and symbolic links + */ + if(src_linfo1.type == H5L_TYPE_HARD) + { + /* optional data pass */ + info1_obj->opts = (diff_opt_t*)options; + + if(H5Oget_info_by_name(file1_id, obj1fullname, &oinfo1, H5P_DEFAULT) < 0) + { + parallel_print("Error: Could not get file contents\n"); + options->err_stat = 1; + goto out; + } + obj1type = oinfo1.type; + trav_info_add(info1_obj, obj1fullname, obj1type); + } + else if (src_linfo1.type == H5L_TYPE_SOFT) + { + obj1type = H5TRAV_TYPE_LINK; + trav_info_add(info1_obj, obj1fullname, obj1type); + } + else if (src_linfo1.type == H5L_TYPE_EXTERNAL) + { + obj1type = H5TRAV_TYPE_UDLINK; + trav_info_add(info1_obj, obj1fullname, obj1type); + } + } + + /*---------------------------------------------------------- + * check if obj2 is root, group, single object or symlink + */ + if(!HDstrcmp(obj2fullname, "/")) + { + obj2type = H5TRAV_TYPE_GROUP; + } + else + { + /* check if link itself exist */ + if(H5Lexists(file2_id, obj2fullname, H5P_DEFAULT) <= 0) + { + parallel_print ("Object <%s> could not be found in <%s>\n", obj2fullname, fname2); + options->err_stat = 1; + goto out; + } + /* get info from link */ + if(H5Lget_info(file2_id, obj2fullname, &src_linfo2, H5P_DEFAULT) < 0) + { + parallel_print("Unable to get link info from <%s>\n", obj2fullname); + goto out; + } + + info2_lp = info2_obj; + + /* + * check the type of specified path for hard and symbolic links + */ + if(src_linfo2.type == H5L_TYPE_HARD) + { + /* optional data pass */ + info2_obj->opts = (diff_opt_t*)options; + + if(H5Oget_info_by_name(file2_id, obj2fullname, &oinfo2, H5P_DEFAULT) < 0) + { + parallel_print("Error: Could not get file contents\n"); + options->err_stat = 1; + goto out; + } + obj2type = oinfo2.type; + trav_info_add(info2_obj, obj2fullname, obj2type); + } + else if (src_linfo2.type == H5L_TYPE_SOFT) + { + obj2type = H5TRAV_TYPE_LINK; + trav_info_add(info2_obj, obj2fullname, obj2type); + } + else if (src_linfo2.type == H5L_TYPE_EXTERNAL) + { + obj2type = H5TRAV_TYPE_UDLINK; + trav_info_add(info2_obj, obj2fullname, obj2type); + } + } + } + /* if no object specified */ else { + /* set root group */ + obj1fullname = (char*)HDcalloc(2, sizeof(char)); + HDstrcat(obj1fullname, "/"); + obj2fullname = (char*)HDcalloc(2, sizeof(char)); + HDstrcat(obj2fullname, "/"); + } + + options->cmn_objs = 1; /* eliminate warning */ + + /*--------------------------------------------- + * check for following symlinks + */ + if (options->follow_links) + { + /* pass how to handle printing warning to linkinfo option */ + if(print_warn(options)) + trg_linfo1.opt.msg_mode = trg_linfo2.opt.msg_mode = 1; + + /*------------------------------- + * check symbolic link (object1) + */ + l_ret = H5tools_get_symlink_info(file1_id, obj1fullname, &trg_linfo1, TRUE); + /* dangling link */ + if (l_ret == 0) + { + if (options->no_dangle_links) + { + /* gangling link is error */ + if(options->m_verbose) + parallel_print("Warning: <%s> is a dangling link.\n", obj1fullname); + options->err_stat = 1; + goto out; + } + else + { + if(options->m_verbose) + parallel_print("obj1 <%s> is a dangling link.\n", obj1fullname); + nfound++; + print_found(nfound); + goto out; + } + } + else if(l_ret < 0) /* fail */ + { + parallel_print ("Object <%s> could not be found in <%s>\n", obj1fullname, fname1); + options->err_stat = 1; + goto out; + } + else if(l_ret != 2) /* symbolic link */ + obj1type = trg_linfo1.trg_type; + + /*------------------------------- + * check symbolic link (object2) + */ + l_ret = H5tools_get_symlink_info(file2_id, obj2fullname, &trg_linfo2, TRUE); + /* dangling link */ + if (l_ret == 0) + { + if (options->no_dangle_links) + { + /* gangling link is error */ + if(options->m_verbose) + parallel_print("Warning: <%s> is a dangling link.\n", obj2fullname); + options->err_stat = 1; + goto out; + } + else + { + if(options->m_verbose) + parallel_print("obj2 <%s> is a dangling link.\n", obj2fullname); + nfound++; + print_found(nfound); + goto out; + } + } + else if(l_ret < 0) /* fail */ + { + parallel_print ("Object <%s> could not be found in <%s>\n", obj2fullname, fname2); + options->err_stat = 1; + goto out; + } + else if(l_ret != 2) /* symbolic link */ + obj2type = trg_linfo2.trg_type; + } /* end of if follow symlinks */ + + + /* if both obj1 and obj2 are group */ + if (obj1type == H5TRAV_TYPE_GROUP && obj2type == H5TRAV_TYPE_GROUP) + { + /* + * traverse group1 + */ + trav_info_init(fname1, file1_id, &info1_grp); + /* optional data pass */ + info1_grp->opts = (diff_opt_t*)options; + + if(h5trav_visit(file1_id,obj1fullname,TRUE,TRUE, + trav_grp_objs,trav_grp_symlinks, info1_grp) < 0) + { + parallel_print("Error: Could not get file contents\n"); + options->err_stat = 1; + goto out; + } + info1_lp = info1_grp; + + /* + * traverse group2 + */ + trav_info_init(fname2, file2_id, &info2_grp); + /* optional data pass */ + info2_grp->opts = (diff_opt_t*)options; + + if(h5trav_visit(file2_id,obj2fullname,TRUE,TRUE, + trav_grp_objs,trav_grp_symlinks, info2_grp) < 0) + { + parallel_print("Error: Could not get file contents\n"); + options->err_stat = 1; + goto out; + } /* end if */ + info2_lp = info2_grp; + + #ifdef H5_HAVE_PARALLEL if(g_Parallel) { - int i; - - if((HDstrlen(fname1) > 1024) || (HDstrlen(fname2) > 1024)) + if((HDstrlen(fname1) > MAX_FILENAME) || + (HDstrlen(fname2) > MAX_FILENAME)) { - fprintf(stderr, "The parallel diff only supports path names up to 1024 characters\n"); + fprintf(stderr, "The parallel diff only supports path names up to %d characters\n", MAX_FILENAME); MPI_Abort(MPI_COMM_WORLD, 0); } /* end if */ @@ -378,21 +958,57 @@ hsize_t h5diff(const char *fname1, /* Alert the worker tasks that there's going to be work. */ for(i = 1; i < g_nTasks; i++) - MPI_Send(filenames, (1024 * 2), MPI_CHAR, i, MPI_TAG_PARALLEL, MPI_COMM_WORLD); + MPI_Send(filenames, (MAX_FILENAME * 2), MPI_CHAR, i, MPI_TAG_PARALLEL, MPI_COMM_WORLD); } /* end if */ #endif + build_match_list (obj1fullname, info1_lp, obj2fullname, info2_lp, + &match_list, options); + nfound = diff_match(file1_id, obj1fullname, info1_lp, + file2_id, obj2fullname, info2_lp, + match_list, options); + } + else + { +#ifdef H5_HAVE_PARALLEL + if(g_Parallel) + /* Only single object diff, parallel workers won't be needed */ + phdiff_dismiss_workers(); +#endif - nfound = diff_match(file1_id, - info1, - file2_id, - info2, - options); - } /* end else */ - - trav_info_free(info1); - trav_info_free(info2); + nfound = diff_compare(file1_id, fname1, obj1fullname, info1_lp, + file2_id, fname2, obj2fullname, info2_lp, + options); + } out: +#ifdef H5_HAVE_PARALLEL + if(g_Parallel) + /* All done at this point, let tasks know that they won't be needed */ + phdiff_dismiss_workers(); +#endif + /* free buffers in trav_info structures */ + if (info1_obj) + trav_info_free(info1_obj); + if (info2_obj) + trav_info_free(info2_obj); + + if (info1_grp) + trav_info_free(info1_grp); + if (info2_grp) + trav_info_free(info2_grp); + + /* free buffers */ + if (obj1fullname) + HDfree(obj1fullname); + if (obj2fullname) + HDfree(obj2fullname); + + /* free link info buffer */ + if (trg_linfo1.trg_path) + HDfree(trg_linfo1.trg_path); + if (trg_linfo2.trg_path) + HDfree(trg_linfo2.trg_path); + /* close */ H5E_BEGIN_TRY { @@ -408,9 +1024,11 @@ out: /*------------------------------------------------------------------------- * Function: diff_match * - * Purpose: Find common objects; the algorithm used for this search is the - * cosequential match algorithm and is described in - * Folk, Michael; Zoellick, Bill. (1992). File Structures. Addison-Wesley. + * Purpose: + * Compare common objects in given groups according to table structure. + * The table structure has flags which can be used to find common objects + * and will be compared. + * Common object means same name (absolute path) objects in both location. * * Return: Number of differences found * @@ -428,94 +1046,27 @@ out: * 3) objects with the same name are not of the same type *------------------------------------------------------------------------- */ -hsize_t diff_match(hid_t file1_id, - trav_info_t *info1, - hid_t file2_id, - trav_info_t *info2, - diff_opt_t *options) +hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, + hid_t file2_id, const char *grp2, trav_info_t *info2, + trav_table_t *table, diff_opt_t *options) { - trav_table_t *table = NULL; - size_t curr1; - size_t curr2; - unsigned infile[2]; hsize_t nfound = 0; unsigned i; - /*------------------------------------------------------------------------- - * build the list - *------------------------------------------------------------------------- - */ - trav_table_init( &table ); - - curr1 = 0; - curr2 = 0; - while(curr1 < info1->nused && curr2 < info2->nused) - { - /* criteria is string compare */ - int cmp = HDstrcmp(info1->paths[curr1].path, info2->paths[curr2].path); - - if(cmp == 0) { - infile[0] = 1; - infile[1] = 1; - trav_table_addflags(infile, info1->paths[curr1].path, info1->paths[curr1].type, table); - - curr1++; - curr2++; - } /* end if */ - else if(cmp < 0) - { - infile[0] = 1; - infile[1] = 0; - trav_table_addflags(infile, info1->paths[curr1].path, info1->paths[curr1].type, table); - curr1++; - } /* end else-if */ - else - { - infile[0] = 0; - infile[1] = 1; - trav_table_addflags(infile, info2->paths[curr2].path, info2->paths[curr2].type, table); - curr2++; - } /* end else */ - } /* end while */ - - /* list1 did not end */ - infile[0] = 1; - infile[1] = 0; - while(curr1 < info1->nused) - { - trav_table_addflags(infile, info1->paths[curr1].path, info1->paths[curr1].type, table); - curr1++; - } /* end while */ - - /* list2 did not end */ - infile[0] = 0; - infile[1] = 1; - while(curr2 < info2->nused) - { - trav_table_addflags(infile, info2->paths[curr2].path, info2->paths[curr2].type, table); - curr2++; - } /* end while */ - - /*------------------------------------------------------------------------- - * print the list - *------------------------------------------------------------------------- - */ - if(options->m_verbose) - { - parallel_print("\n"); - parallel_print("file1 file2\n"); - parallel_print("---------------------------------------\n"); - for(i = 0; i < table->nobjs; i++) { - char c1, c2; - - c1 = (table->objs[i].flags[0]) ? 'x' : ' '; - c2 = (table->objs[i].flags[1]) ? 'x' : ' '; - parallel_print("%5c %6c %-15s\n", c1, c2, table->objs[i].name); - } /* end for */ - parallel_print ("\n"); - } /* end if */ + char * grp1_path = ""; + char * grp2_path = ""; + char * obj1_fullpath = NULL; + char * obj2_fullpath = NULL; + /* + * if not root, prepare object name to be pre-appended to group path to + * make full path + */ + if (HDstrcmp (grp1, "/")) + grp1_path = grp1; + if (HDstrcmp (grp2, "/")) + grp2_path = grp2; /*------------------------------------------------------------------------- * regarding the return value of h5diff (0, no difference in files, 1 difference ) @@ -525,10 +1076,14 @@ hsize_t diff_match(hid_t file1_id, *------------------------------------------------------------------------- */ - /* number of different objects */ - if ( info1->nused != info2->nused ) + /* not valid compare nused when --exclude-path option is used */ + if (!options->exclude_path) { - options->contents = 0; + /* number of different objects */ + if ( info1->nused != info2->nused ) + { + options->contents = 0; + } } /* objects in one file and not the other */ @@ -537,6 +1092,7 @@ hsize_t diff_match(hid_t file1_id, if( table->objs[i].flags[0] != table->objs[i].flags[1] ) { options->contents = 0; + break; } } @@ -552,8 +1108,6 @@ hsize_t diff_match(hid_t file1_id, } } - - /*------------------------------------------------------------------------- * do the diff for common objects *------------------------------------------------------------------------- @@ -576,13 +1130,22 @@ hsize_t diff_match(hid_t file1_id, { if( table->objs[i].flags[0] && table->objs[i].flags[1]) { + /* make full path for obj1 */ + obj1_fullpath = (char*)HDcalloc (strlen(grp1_path) + strlen (table->objs[i].name) + 1, sizeof (char)); + HDstrcpy(obj1_fullpath, grp1_path); + HDstrcat(obj1_fullpath, table->objs[i].name); + + /* make full path for obj2 */ + obj2_fullpath = (char*)HDcalloc (strlen(grp2_path) + strlen (table->objs[i].name) + 1, sizeof (char)); + HDstrcpy(obj2_fullpath, grp2_path); + HDstrcat(obj2_fullpath, table->objs[i].name); + options->cmn_objs = 1; if(!g_Parallel) { - nfound += diff(file1_id, - table->objs[i].name, - file2_id, - table->objs[i].name, options, table->objs[i].type); + nfound += diff(file1_id, obj1_fullpath, + file2_id, obj2_fullpath, + options, table->objs[i].type); } /* end if */ #ifdef H5_HAVE_PARALLEL else @@ -599,13 +1162,15 @@ hsize_t diff_match(hid_t file1_id, */ /*Set up args to pass to worker task. */ - if(HDstrlen(table->objs[i].name) > 255) + if(HDstrlen(obj1_fullpath) > 255 || + HDstrlen(obj2_fullpath) > 255) { printf("The parallel diff only supports object names up to 255 characters\n"); MPI_Abort(MPI_COMM_WORLD, 0); } /* end if */ - HDstrcpy(args.name, table->objs[i].name); + HDstrcpy(args.name1, obj1_fullpath); + HDstrcpy(args.name2, obj2_fullpath); args.options = *options; args.type = table->objs[i].type; @@ -751,6 +1316,10 @@ hsize_t diff_match(hid_t file1_id, } /* end if */ } /* end else */ #endif /* H5_HAVE_PARALLEL */ + if (obj1_fullpath) + HDfree (obj1_fullpath); + if (obj2_fullpath) + HDfree (obj2_fullpath); } /* end if */ } /* end for */ h5diffdebug("done with for loop\n"); @@ -855,7 +1424,8 @@ hsize_t diff_match(hid_t file1_id, #endif /* H5_HAVE_PARALLEL */ /* free table */ - trav_table_free(table); + if (table) + trav_table_free(table); return nfound; } @@ -893,6 +1463,8 @@ hsize_t diff_compare(hid_t file1_id, int l_ret; int is_dangle_link1 = 0; int is_dangle_link2 = 0; + const char *obj1name = obj1_name; + const char *obj2name = obj2_name; /* local variables for diff() */ h5trav_type_t obj1type, obj2type; @@ -905,18 +1477,18 @@ hsize_t diff_compare(hid_t file1_id, HDmemset(&linkinfo1, 0, sizeof(h5tool_link_info_t)); HDmemset(&linkinfo2, 0, sizeof(h5tool_link_info_t)); - i = h5trav_getindex (info1, obj1_name); - j = h5trav_getindex (info2, obj2_name); + i = h5trav_getindex (info1, obj1name); + j = h5trav_getindex (info2, obj2name); if (i == -1) { - parallel_print ("Object <%s> could not be found in <%s>\n", obj1_name, + parallel_print ("Object <%s> could not be found in <%s>\n", obj1name, file1_name); f1 = 1; } if (j == -1) { - parallel_print ("Object <%s> could not be found in <%s>\n", obj2_name, + parallel_print ("Object <%s> could not be found in <%s>\n", obj2name, file2_name); f2 = 1; } @@ -925,10 +1497,9 @@ hsize_t diff_compare(hid_t file1_id, options->err_stat = 1; return 0; } - /* use the name with "/" first, as obtained by iterator function */ - obj1_name = info1->paths[i].path; - obj2_name = info2->paths[j].path; + obj1name = info1->paths[i].path; + obj2name = info2->paths[j].path; obj1type = info1->paths[i].type; obj2type = info2->paths[j].type; @@ -951,7 +1522,7 @@ hsize_t diff_compare(hid_t file1_id, if (obj1type == H5TRAV_TYPE_LINK) { /* get type of target object */ - l_ret = H5tools_get_link_info(file1_id, obj1_name, &linkinfo1, TRUE); + l_ret = H5tools_get_symlink_info(file1_id, obj1name, &linkinfo1, TRUE); /* dangling link */ if (l_ret == 0) { @@ -959,7 +1530,7 @@ hsize_t diff_compare(hid_t file1_id, { /* gangling link is error */ if(options->m_verbose) - parallel_print("Warning: <%s> is a dangling link.\n", obj1_name); + parallel_print("Warning: <%s> is a dangling link.\n", obj1name); options->err_stat = 1; goto out; } @@ -984,7 +1555,7 @@ hsize_t diff_compare(hid_t file1_id, if (obj2type == H5TRAV_TYPE_LINK) { /* get type target object */ - l_ret = H5tools_get_link_info(file2_id, obj2_name, &linkinfo2, TRUE); + l_ret = H5tools_get_symlink_info(file2_id, obj2name, &linkinfo2, TRUE); /* dangling link */ if (l_ret == 0) { @@ -992,7 +1563,7 @@ hsize_t diff_compare(hid_t file1_id, { /* gangling link is error */ if(options->m_verbose) - parallel_print("Warning: <%s> is a dangling link.\n", obj2_name); + parallel_print("Warning: <%s> is a dangling link.\n", obj2name); options->err_stat = 1; goto out; } @@ -1021,7 +1592,7 @@ hsize_t diff_compare(hid_t file1_id, if (obj1type == H5TRAV_TYPE_UDLINK) { /* get type and name of target object */ - l_ret = H5tools_get_link_info(file1_id, obj1_name, &linkinfo1, TRUE); + l_ret = H5tools_get_symlink_info(file1_id, obj1name, &linkinfo1, TRUE); /* dangling link */ if (l_ret == 0) { @@ -1029,7 +1600,7 @@ hsize_t diff_compare(hid_t file1_id, { /* gangling link is error */ if(options->m_verbose) - parallel_print("Warning: <%s> is a dangling link.\n", obj1_name); + parallel_print("Warning: <%s> is a dangling link.\n", obj1name); options->err_stat = 1; goto out; } @@ -1055,7 +1626,7 @@ hsize_t diff_compare(hid_t file1_id, if (obj2type == H5TRAV_TYPE_UDLINK) { /* get type and name of target object */ - l_ret = H5tools_get_link_info(file2_id, obj2_name, &linkinfo2, TRUE); + l_ret = H5tools_get_symlink_info(file2_id, obj2name, &linkinfo2, TRUE); /* dangling link */ if (l_ret == 0) { @@ -1063,7 +1634,7 @@ hsize_t diff_compare(hid_t file1_id, { /* gangling link is error */ if(options->m_verbose) - parallel_print("Warning: <%s> is a dangling link.\n", obj2_name); + parallel_print("Warning: <%s> is a dangling link.\n", obj2name); options->err_stat = 1; goto out; } @@ -1094,15 +1665,15 @@ hsize_t diff_compare(hid_t file1_id, if (options->m_verbose||options->m_list_not_cmp) { parallel_print("<%s> is of type %s and <%s> is of type %s\n", - obj1_name, get_type(obj1type), - obj2_name, get_type(obj2type)); + obj1name, get_type(obj1type), + obj2name, get_type(obj2type)); } options->not_cmp=1; goto out; } - nfound = diff(file1_id, obj1_name, - file2_id, obj2_name, + nfound = diff(file1_id, obj1name, + file2_id, obj2name, options, obj1type); out: @@ -1113,7 +1684,7 @@ out: { if(print_objname(options, nfound)) { - do_print_objname("dangling link", obj1_name, obj2_name); + do_print_objname("dangling link", obj1name, obj2name); print_found(nfound); } } @@ -1121,7 +1692,7 @@ out: else if (is_dangle_link1) { if(options->m_verbose) - parallel_print("obj1 <%s> is a dangling link.\n", obj1_name); + parallel_print("obj1 <%s> is a dangling link.\n", obj1name); nfound++; if(print_objname(options, nfound)) print_found(nfound); @@ -1130,7 +1701,7 @@ out: else if (is_dangle_link2) { if(options->m_verbose) - parallel_print("obj2 <%s> is a dangling link.\n", obj2_name); + parallel_print("obj2 <%s> is a dangling link.\n", obj2name); nfound++; if(print_objname(options, nfound)) print_found(nfound); @@ -1195,6 +1766,53 @@ hsize_t diff(hid_t file1_id, if(print_warn(options)) linkinfo1.opt.msg_mode = linkinfo2.opt.msg_mode = 1; + /* + * Get target object info for obj1 and obj2 and check dangling links. + * (for hard-linked-objects, because diff() only get the obj1's type, + * so obj2's type should be check here when diff() is called from + * diff_match() for same-named objects with dangling link only one side.) + */ + + /* target object1 - get type and name */ + ret = H5tools_get_symlink_info(file1_id, path1, &linkinfo1, TRUE); + /* dangling link */ + if (ret == 0) + { + if (options->no_dangle_links) + { + /* gangling link is error */ + if(options->m_verbose) + parallel_print("Warning: <%s> is a dangling link.\n", path1); + goto out; + } + else + is_dangle_link1 = 1; + } + else if (ret < 0) + goto out; + + /* target object2 - get type and name */ + ret = H5tools_get_symlink_info(file2_id, path2, &linkinfo2, TRUE); + /* dangling link */ + if (ret == 0) + { + if (options->no_dangle_links) + { + /* gangling link is error */ + if(options->m_verbose) + parallel_print("Warning: <%s> is a dangling link.\n", path2); + goto out; + } + else + is_dangle_link2 = 1; + } + else if (ret < 0) + goto out; + + /* found dangling link */ + if (is_dangle_link1 || is_dangle_link2) + goto out2; + switch(type) { /*---------------------------------------------------------------------- @@ -1270,11 +1888,6 @@ hsize_t diff(hid_t file1_id, *---------------------------------------------------------------------- */ case H5TRAV_TYPE_GROUP: - ret = HDstrcmp(path1, path2); - - /* if "path1" != "path2" then the groups are "different" */ - nfound = (ret != 0) ? 1 : 0; - if(print_objname(options, nfound)) do_print_objname("group", path1, path2); @@ -1309,47 +1922,6 @@ hsize_t diff(hid_t file1_id, */ case H5TRAV_TYPE_LINK: { - /* get type and name of target object */ - ret = H5tools_get_link_info(file1_id, path1, &linkinfo1, TRUE); - /* dangling link */ - if (ret == 0) - { - if (options->no_dangle_links) - { - /* gangling link is error */ - if(options->m_verbose) - parallel_print("Warning: <%s> is a dangling link.\n", path1); - goto out; - } - else - is_dangle_link1 = 1; - } - else if (ret < 0) - goto out; - - /* get type and name of target object */ - ret = H5tools_get_link_info(file2_id, path2, &linkinfo2, TRUE); - /* dangling link */ - if (ret == 0) - { - if (options->no_dangle_links) - { - /* gangling link is error */ - if(options->m_verbose) - parallel_print("Warning: <%s> is a dangling link.\n", path2); - goto out; - } - else - is_dangle_link2 = 1; - } - else if (ret < 0) - goto out; - - - /* found dangling link */ - if (is_dangle_link1 || is_dangle_link2) - goto out2; - ret = HDstrcmp(linkinfo1.trg_path, linkinfo2.trg_path); /* if the target link name is not same then the links are "different" */ @@ -1393,46 +1965,6 @@ hsize_t diff(hid_t file1_id, */ case H5TRAV_TYPE_UDLINK: { - /* get type and name of target object */ - ret = H5tools_get_link_info(file1_id, path1, &linkinfo1, TRUE); - /* dangling link */ - if (ret == 0) - { - if (options->no_dangle_links) - { - /* gangling link is error */ - if(options->m_verbose) - parallel_print("Warning: <%s> is a dangling link.\n", path1); - goto out; - } - else - is_dangle_link1=1; - } - else if (ret < 0) - goto out; - - /* get type and name of target object */ - ret = H5tools_get_link_info(file2_id, path2, &linkinfo2, TRUE); - /* dangling link */ - if (ret == 0) - { - if (options->no_dangle_links) - { - /* gangling link is error */ - if(options->m_verbose) - parallel_print("Warning: <%s> is a dangling link.\n", path2); - goto out; - } - else - is_dangle_link2=1; - } - else if (ret < 0) - goto out; - - /* found dangling link */ - if (is_dangle_link1 || is_dangle_link2) - goto out2; - /* Only external links will have a query function registered */ if(linkinfo1.linfo.type == H5L_TYPE_EXTERNAL && linkinfo2.linfo.type == H5L_TYPE_EXTERNAL) { diff --git a/tools/lib/h5diff.h b/tools/lib/h5diff.h index 71993b8..c89b9d3 100644 --- a/tools/lib/h5diff.h +++ b/tools/lib/h5diff.h @@ -19,10 +19,18 @@ #include "hdf5.h" #include "h5trav.h" +#define MAX_FILENAME 1024 + /*------------------------------------------------------------------------- * command line options *------------------------------------------------------------------------- */ +/* linked list to keep exclude path list */ +struct exclude_path_list { + char *obj_path; + h5trav_type_t obj_type; + struct exclude_path_list * next; +}; typedef struct { int m_quiet; /* quiet mide: no output at all */ @@ -43,6 +51,8 @@ typedef struct { int contents; /* equal contents */ int do_nans; /* consider Nans while diffing floats */ int m_list_not_cmp; /* list not comparable messages */ + int exclude_path; /* exclude path to an object */ + struct exclude_path_list * exclude; /* keep exclude path list */ } diff_opt_t; @@ -107,11 +117,9 @@ hsize_t diff_compare( hid_t file1_id, trav_info_t *info2, diff_opt_t *options ); -hsize_t diff_match( hid_t file1_id, - trav_info_t *info1, - hid_t file2_id, - trav_info_t *info2, - diff_opt_t *options ); +hsize_t diff_match( hid_t file1_id, const char *grp1, trav_info_t *info1, + hid_t file2_id, const char *grp2, trav_info_t *info2, + trav_table_t *table, diff_opt_t *options ); hsize_t diff_array( void *_mem1, void *_mem2, diff --git a/tools/lib/h5tools_utils.c b/tools/lib/h5tools_utils.c index a0fca8b..7586fd0 100644 --- a/tools/lib/h5tools_utils.c +++ b/tools/lib/h5tools_utils.c @@ -702,9 +702,9 @@ tmpfile(void) #endif /*------------------------------------------------------------------------- - * Function: H5tools_get_link_info + * Function: H5tools_get_symlink_info * - * Purpose: Get link (soft, external) info and its target object type + * Purpose: Get symbolic link (soft, external) info and its target object type (dataset, group, named datatype) and path, if exist * * Patameters: @@ -726,7 +726,7 @@ tmpfile(void) * Date: Feb 8, 2010 *-------------------------------------------------------------------------*/ int -H5tools_get_link_info(hid_t file_id, const char * linkpath, h5tool_link_info_t *link_info, +H5tools_get_symlink_info(hid_t file_id, const char * linkpath, h5tool_link_info_t *link_info, hbool_t get_obj_type) { htri_t l_ret; @@ -738,6 +738,14 @@ H5tools_get_link_info(hid_t file_id, const char * linkpath, h5tool_link_info_t * /* init */ link_info->trg_type = H5O_TYPE_UNKNOWN; + /* if path is root, return group type */ + if(!HDstrcmp(linkpath,"/")) + { + link_info->trg_type = H5O_TYPE_GROUP; + ret = 2; + goto out; + } + /* check if link itself exist */ if(H5Lexists(file_id, linkpath, H5P_DEFAULT) <= 0) { if(link_info->opt.msg_mode == 1) @@ -827,7 +835,7 @@ out: H5Pclose(lapl); return ret; -} /* end H5tools_get_link_info() */ +} /* end H5tools_get_symlink_info() */ /*------------------------------------------------------------------------- * Audience: Public diff --git a/tools/lib/h5tools_utils.h b/tools/lib/h5tools_utils.h index 08451e1..88ab7ea 100644 --- a/tools/lib/h5tools_utils.h +++ b/tools/lib/h5tools_utils.h @@ -145,18 +145,18 @@ typedef struct { int msg_mode; } h5tool_opt_t; -/* obtain link info from H5tools_get_link_info() */ +/* obtain link info from H5tools_get_symlink_info() */ typedef struct { H5O_type_t trg_type; /* OUT: target type */ const char *trg_path; /* OUT: target obj path. This must be freed - * when used with H5tools_get_link_info() */ + * when used with H5tools_get_symlink_info() */ H5L_info_t linfo; /* OUT: link info */ h5tool_opt_t opt; /* IN: options */ } h5tool_link_info_t; /* Definitions of routines */ -H5TOOLS_DLL int H5tools_get_link_info(hid_t file_id, const char * linkpath, +H5TOOLS_DLL int H5tools_get_symlink_info(hid_t file_id, const char * linkpath, h5tool_link_info_t *link_info, hbool_t get_obj_type); H5TOOLS_DLL const char *h5tools_getprogname(void); H5TOOLS_DLL void h5tools_setprogname(const char*progname); diff --git a/tools/lib/h5trav.c b/tools/lib/h5trav.c index 287af29..5195261 100644 --- a/tools/lib/h5trav.c +++ b/tools/lib/h5trav.c @@ -292,7 +292,7 @@ traverse(hid_t file_id, const char *grp_name, hbool_t visit_start, * *------------------------------------------------------------------------- */ -static void +void trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type) { size_t idx; /* Index of address to use */ @@ -323,7 +323,7 @@ trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type) * *------------------------------------------------------------------------- */ -static int +int trav_info_visit_obj(const char *path, const H5O_info_t *oinfo, const char UNUSED *already_visited, void *udata) { @@ -348,7 +348,7 @@ trav_info_visit_obj(const char *path, const H5O_info_t *oinfo, * *------------------------------------------------------------------------- */ -static int +int trav_info_visit_lnk(const char *path, const H5L_info_t *linfo, void *udata) { /* Add the link to the 'info' struct */ @@ -438,14 +438,21 @@ h5trav_getindex(const trav_info_t *info, const char *obj) */ void -trav_info_init(trav_info_t **_info) +trav_info_init(const char *filename, hid_t fileid, trav_info_t **_info) { trav_info_t *info = (trav_info_t *)HDmalloc(sizeof(trav_info_t)); /* Init info structure */ info->nused = info->nalloc = 0; info->paths = NULL; - + info->fname = filename; + info->fid = fileid; + + /* Initialize list of visited symbolic links */ + info->symlink_visited.nused = 0; + info->symlink_visited.nalloc = 0; + info->symlink_visited.objs = NULL; + info->symlink_visited.dangle_link = FALSE; *_info = info; } /* end trav_info_init() */ @@ -464,6 +471,16 @@ trav_info_free(trav_info_t *info) size_t u; /* Local index variable */ if(info) { + /* Free visited symbolic links path and file (if alloc) */ + for(u=0; u < info->symlink_visited.nused; u++) + { + if (info->symlink_visited.objs[u].file) + HDfree(info->symlink_visited.objs[u].file); + + HDfree(info->symlink_visited.objs[u].path); + } + HDfree(info->symlink_visited.objs); + /* Free path names */ for(u = 0; u < info->nused; u++) HDfree(info->paths[u].path); @@ -973,3 +990,119 @@ h5trav_visit(hid_t fid, const char *grp_name, hbool_t visit_start, return 0; } +/*------------------------------------------------------------------------- + * Function: symlink_visit_add + * + * Purpose: Add an symbolic link to visited data structure + * + * Return: 0 on success, -1 on failure + * + * Programmer: Neil Fortner, nfortne2@hdfgroup.org + * Adapted from trav_addr_add in h5trav.c by Quincey Koziol + * + * Date: September 5, 2008 + * + * Modified: + * Jonathan Kim + * - Moved from h5ls.c to share among tools. (Sep 16, 2010) + * - Renamed from elink_trav_add to symlink_visit_add for both soft and + * external links. (May 25, 2010) + * - Add type parameter to distingush between soft and external link for + * sure, which prevent from mixing up visited link when the target names + * are same between the soft and external link, as code marks with the + * target name. (May 25,2010) + * + *------------------------------------------------------------------------- + */ +herr_t +symlink_visit_add(symlink_trav_t *visited, H5L_type_t type, const char *file, const char *path) +{ + size_t idx; /* Index of address to use */ + void *tmp_ptr; + + /* Allocate space if necessary */ + if(visited->nused == visited->nalloc) + { + visited->nalloc = MAX(1, visited->nalloc * 2); + if(NULL == (tmp_ptr = HDrealloc(visited->objs, visited->nalloc * sizeof(visited->objs[0])))) + return -1; + visited->objs = tmp_ptr; + } /* end if */ + + /* Append it */ + idx = visited->nused++; + + visited->objs[idx].type = type; + visited->objs[idx].file = NULL; + visited->objs[idx].path = NULL; + + if (type == H5L_TYPE_EXTERNAL) + { + if(NULL == (visited->objs[idx].file = HDstrdup(file))) + { + visited->nused--; + return -1; + } + } + + if(NULL == (visited->objs[idx].path = HDstrdup(path))) + { + visited->nused--; + if (visited->objs[idx].file) + HDfree (visited->objs[idx].file); + return -1; + } + + return 0; +} /* end symlink_visit_add() */ + + +/*------------------------------------------------------------------------- + * Function: symlink_is_visited + * + * Purpose: Check if an symbolic link has already been visited + * + * Return: TRUE/FALSE + * + * Programmer: Neil Fortner, nfortne2@hdfgroup.org + * Adapted from trav_addr_visited in h5trav.c by Quincey Koziol + * + * Date: September 5, 2008 + * + * Modified: + * Jonathan Kim + * - Moved from h5ls.c to share among tools. (Sep 16, 2010) + * - Renamed from elink_trav_visited to symlink_is_visited for both soft and + * external links. (May 25, 2010) + * - Add type parameter to distingush between soft and external link for + * sure, which prevent from mixing up visited link when the target names + * are same between the soft and external link, as code marks with the + * target name. (May 25,2010) + * + *------------------------------------------------------------------------- + */ +hbool_t +symlink_is_visited(symlink_trav_t *visited, H5L_type_t type, const char *file, const char *path) +{ + size_t u; /* Local index variable */ + + /* Look for symlink */ + for(u = 0; u < visited->nused; u++) + { + /* Check for symlink values already in array */ + /* check type and path pair to distingush between symbolic links */ + if ((visited->objs[u].type == type) && !HDstrcmp(visited->objs[u].path, path)) + { + /* if external link, file need to be matched as well */ + if (visited->objs[u].type == H5L_TYPE_EXTERNAL) + { + if (!HDstrcmp(visited->objs[u].file, file)) + return (TRUE); + } + return (TRUE); + } + } + /* Didn't find symlink */ + return(FALSE); +} /* end symlink_is_visited() */ + diff --git a/tools/lib/h5trav.h b/tools/lib/h5trav.h index bb31461..8eb93fa 100644 --- a/tools/lib/h5trav.h +++ b/tools/lib/h5trav.h @@ -36,7 +36,7 @@ typedef herr_t (*h5trav_lnk_func_t)(const char *path_name, const H5L_info_t *lin *------------------------------------------------------------------------- */ typedef enum { - H5TRAV_TYPE_UNKNOWN = -1, /* Unknown object type */ + H5TRAV_TYPE_UNKNOWN = -1, /* Unknown object type */ H5TRAV_TYPE_GROUP, /* Object is a group */ H5TRAV_TYPE_DATASET, /* Object is a dataset */ H5TRAV_TYPE_NAMED_DATATYPE, /* Object is a named datatype */ @@ -48,6 +48,20 @@ typedef enum { * public struct to store name and type of an object *------------------------------------------------------------------------- */ +/* Struct to keep track of symbolic link targets visited. + * Functions: symlink_visit_add() and symlink_is_visited() + */ +typedef struct symlink_trav_t { + size_t nalloc; + size_t nused; + struct { + H5L_type_t type; + char *file; + char *path; + } *objs; + hbool_t dangle_link; +} symlink_trav_t; + typedef struct trav_path_t { char *path; h5trav_type_t type; @@ -56,7 +70,11 @@ typedef struct trav_path_t { typedef struct trav_info_t { size_t nalloc; size_t nused; + const char *fname; + hid_t fid; /* File ID */ trav_path_t *paths; + symlink_trav_t symlink_visited; /* already visited symbolic links */ + void * opts; /* optional data passing */ } trav_info_t; @@ -110,9 +128,11 @@ extern "C" { * "h5trav general" public functions *------------------------------------------------------------------------- */ -H5TOOLS_DLL int h5trav_visit(hid_t file_id, const char *grp_name, hbool_t visit_start, - hbool_t recurse, h5trav_obj_func_t visit_obj, h5trav_lnk_func_t visit_lnk, - void *udata); +H5TOOLS_DLL int h5trav_visit(hid_t file_id, const char *grp_name, + hbool_t visit_start, hbool_t recurse, h5trav_obj_func_t visit_obj, + h5trav_lnk_func_t visit_lnk, void *udata); +H5TOOLS_DLL herr_t symlink_visit_add(symlink_trav_t *visited, H5L_type_t type, const char *file, const char *path); +H5TOOLS_DLL hbool_t symlink_is_visited(symlink_trav_t *visited, H5L_type_t type, const char *file, const char *path); /*------------------------------------------------------------------------- * "h5trav info" public functions @@ -120,6 +140,8 @@ H5TOOLS_DLL int h5trav_visit(hid_t file_id, const char *grp_name, hbool_t visit_ */ H5TOOLS_DLL int h5trav_getinfo(hid_t file_id, trav_info_t *info); H5TOOLS_DLL ssize_t h5trav_getindex(const trav_info_t *info, const char *obj); +H5TOOLS_DLL int trav_info_visit_obj (const char *path, const H5O_info_t *oinfo, const char *already_visited, void *udata); +H5TOOLS_DLL int trav_info_visit_lnk (const char *path, const H5L_info_t *linfo, void *udata); /*------------------------------------------------------------------------- * "h5trav table" public functions @@ -144,10 +166,12 @@ H5TOOLS_DLL int h5trav_print(hid_t fid); *------------------------------------------------------------------------- */ -H5TOOLS_DLL void trav_info_init(trav_info_t **info); +H5TOOLS_DLL void trav_info_init(const char *filename, hid_t fileid, trav_info_t **info); H5TOOLS_DLL void trav_info_free(trav_info_t *info); +H5TOOLS_DLL void trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type); + /*------------------------------------------------------------------------- * table private functions *------------------------------------------------------------------------- diff --git a/tools/lib/ph5diff.h b/tools/lib/ph5diff.h index e48a643..0e454c8 100644 --- a/tools/lib/ph5diff.h +++ b/tools/lib/ph5diff.h @@ -38,7 +38,8 @@ extern FILE * overflow_file; struct diff_args { - char name[256]; + char name1[256]; + char name2[256]; h5trav_type_t type; diff_opt_t options; }; diff --git a/tools/misc/CMakeLists.txt b/tools/misc/CMakeLists.txt index 8e7e6bf..1726ae1 100644 --- a/tools/misc/CMakeLists.txt +++ b/tools/misc/CMakeLists.txt @@ -13,44 +13,17 @@ INCLUDE_DIRECTORIES (${HDF5_PROJECT_DIR}/test) #-- Misc Executables ADD_EXECUTABLE (h5debug ${HDF5_TOOLS_MISC_SOURCE_DIR}/h5debug.c) H5_NAMING (h5debug) -IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (h5debug - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) -ENDIF (WIN32) +TARGET_WIN_PROPERTIES (h5debug) TARGET_LINK_LIBRARIES (h5debug ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) ADD_EXECUTABLE (h5repart ${HDF5_TOOLS_MISC_SOURCE_DIR}/h5repart.c) H5_NAMING (h5repart) -IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (h5repart - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) -ENDIF (WIN32) +TARGET_WIN_PROPERTIES (h5repart) TARGET_LINK_LIBRARIES (h5repart ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) ADD_EXECUTABLE (h5mkgrp ${HDF5_TOOLS_MISC_SOURCE_DIR}/h5mkgrp.c) H5_NAMING (h5mkgrp) -IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (h5mkgrp - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) -ENDIF (WIN32) +TARGET_WIN_PROPERTIES (h5mkgrp) TARGET_LINK_LIBRARIES (h5mkgrp ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) SET (H5_DEP_EXECUTABLES @@ -72,30 +45,14 @@ IF (BUILD_TESTING) IF (HDF5_BUILD_GENERATORS AND NOT BUILD_SHARED_LIBS) ADD_EXECUTABLE (h5repart_gentest ${HDF5_TOOLS_MISC_SOURCE_DIR}/h5repart_gentest.c) H5_NAMING (h5repart_gentest) - IF (WIN32) - IF (MSVC) - SET_TARGET_PROPERTIES (h5repart_gentest - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (MSVC) - ENDIF (WIN32) + TARGET_WIN_PROPERTIES (h5repart_gentest) TARGET_LINK_LIBRARIES (h5repart_gentest ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) #ADD_TEST (NAME h5repart_gentest COMMAND $<TARGET_FILE:h5repart_gentest>) ENDIF (HDF5_BUILD_GENERATORS AND NOT BUILD_SHARED_LIBS) ADD_EXECUTABLE (h5repart_test ${HDF5_TOOLS_MISC_SOURCE_DIR}/repart_test.c) H5_NAMING (h5repart_test) - IF (WIN32) - IF (MSVC) - IF (NOT BUILD_SHARED_LIBS) - SET_TARGET_PROPERTIES (h5repart_test - PROPERTIES - LINK_FLAGS "/NODEFAULTLIB:MSVCRT" - ) - ENDIF (NOT BUILD_SHARED_LIBS) - ENDIF (MSVC) - ENDIF (WIN32) + TARGET_WIN_PROPERTIES (h5repart_test) TARGET_LINK_LIBRARIES (h5repart_test ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) # -------------------------------------------------------------------- diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in index eb60cd2..2627ce4 100644 --- a/tools/misc/Makefile.in +++ b/tools/misc/Makefile.in @@ -349,7 +349,6 @@ libdir = @libdir@ libexecdir = @libexecdir@ localedir = @localedir@ localstatedir = @localstatedir@ -lt_ECHO = @lt_ECHO@ mandir = @mandir@ mkdir_p = @mkdir_p@ oldincludedir = @oldincludedir@ @@ -398,6 +397,7 @@ H5CC_PP = $(bindir)/h5pcc H5FC = $(bindir)/h5fc H5FC_PP = $(bindir)/h5pfc H5CPP = $(bindir)/h5c++ +ACLOCAL_AMFLAGS = "-I m4" # The trace script; this is used on source files from the C library to # insert tracing macros. |