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-rw-r--r--tools/src/CMakeLists.txt5
-rw-r--r--tools/src/Makefile.am2
-rw-r--r--tools/src/h5perf/CMakeLists.txt103
-rw-r--r--tools/src/h5perf/Makefile.am63
-rw-r--r--tools/src/h5perf/perf.c (renamed from tools/test/perform/perf.c)329
-rw-r--r--tools/src/h5perf/pio_engine.c (renamed from tools/test/perform/pio_engine.c)0
-rw-r--r--tools/src/h5perf/pio_perf.c (renamed from tools/test/perform/pio_perf.c)135
-rw-r--r--tools/src/h5perf/pio_perf.h (renamed from tools/test/perform/pio_perf.h)11
-rw-r--r--tools/src/h5perf/sio_engine.c (renamed from tools/test/perform/sio_engine.c)0
-rw-r--r--tools/src/h5perf/sio_perf.c (renamed from tools/test/perform/sio_perf.c)0
-rw-r--r--tools/src/h5perf/sio_perf.h (renamed from tools/test/perform/sio_perf.h)2
-rw-r--r--tools/test/perform/CMakeLists.txt81
-rw-r--r--tools/test/perform/Makefile.am23
-rw-r--r--tools/test/perform/pio_standalone.c135
-rw-r--r--tools/test/perform/pio_standalone.h11
-rw-r--r--tools/test/perform/sio_standalone.h11
16 files changed, 653 insertions, 258 deletions
diff --git a/tools/src/CMakeLists.txt b/tools/src/CMakeLists.txt
index 8c3e361..e291f61 100644
--- a/tools/src/CMakeLists.txt
+++ b/tools/src/CMakeLists.txt
@@ -13,7 +13,7 @@ add_subdirectory (misc)
#-- Add the h5import and test executables
add_subdirectory (h5import)
-#-- h5Repack executables
+#-- h5repack executables
add_subdirectory (h5repack)
#-- Add the h5dump and test executables
@@ -30,3 +30,6 @@ add_subdirectory (h5dump)
#-- Add the h5format_convert and test executables
add_subdirectory (h5format_convert)
+
+#-- h5perf executables
+add_subdirectory (h5perf)
diff --git a/tools/src/Makefile.am b/tools/src/Makefile.am
index 397bd31..5af7d06 100644
--- a/tools/src/Makefile.am
+++ b/tools/src/Makefile.am
@@ -23,6 +23,6 @@ CONFIG=ordered
# All subdirectories
SUBDIRS=h5diff h5ls h5dump misc h5import h5repack h5jam h5copy \
- h5format_convert h5stat
+ h5format_convert h5stat h5perf
include $(top_srcdir)/config/conclude.am
diff --git a/tools/src/h5perf/CMakeLists.txt b/tools/src/h5perf/CMakeLists.txt
new file mode 100644
index 0000000..644a5ad
--- /dev/null
+++ b/tools/src/h5perf/CMakeLists.txt
@@ -0,0 +1,103 @@
+cmake_minimum_required (VERSION 3.12)
+project (HDF5_TOOLS_SRC_H5PERF C)
+
+# --------------------------------------------------------------------
+# Add the executables
+# --------------------------------------------------------------------
+#-- Adding test for h5perf_serial
+set (h5perf_serial_SOURCES
+ ${HDF5_TOOLS_SRC_H5PERF_SOURCE_DIR}/sio_perf.c
+ ${HDF5_TOOLS_SRC_H5PERF_SOURCE_DIR}/sio_engine.c
+)
+add_executable (h5perf_serial ${h5perf_serial_SOURCES})
+target_include_directories (h5perf_serial PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+if (NOT ONLY_SHARED_LIBS)
+ TARGET_C_PROPERTIES (h5perf_serial STATIC)
+ target_link_libraries (h5perf_serial PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
+else ()
+ TARGET_C_PROPERTIES (h5perf_serial SHARED)
+ target_link_libraries (h5perf_serial PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
+endif ()
+set_target_properties (h5perf_serial PROPERTIES FOLDER perform)
+set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};h5perf_serial")
+
+set (H5_DEP_EXECUTABLES h5perf_serial)
+
+#-----------------------------------------------------------------------------
+# Add Target to clang-format
+#-----------------------------------------------------------------------------
+if (HDF5_ENABLE_FORMATTERS)
+ clang_format (HDF5_TOOLS_SRC_H5PERF_h5perf_serial_FORMAT h5perf_serial)
+endif ()
+
+if (H5_HAVE_PARALLEL)
+ if (UNIX)
+ #-- Adding test for perf - only on unix systems
+ set (perf_SOURCES
+ ${HDF5_TOOLS_SRC_H5PERF_SOURCE_DIR}/perf.c
+ )
+ add_executable (perf ${perf_SOURCES})
+ target_include_directories (perf PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ if (NOT ONLY_SHARED_LIBS)
+ TARGET_C_PROPERTIES (perf STATIC)
+ target_link_libraries (perf PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
+ else ()
+ TARGET_C_PROPERTIES (perf SHARED)
+ target_link_libraries (perf PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
+ endif ()
+ set_target_properties (perf PROPERTIES FOLDER perform)
+ set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};perf")
+
+ set (H5_DEP_EXECUTABLES perf)
+
+ #-----------------------------------------------------------------------------
+ # Add Target to clang-format
+ #-----------------------------------------------------------------------------
+ if (HDF5_ENABLE_FORMATTERS)
+ clang_format (HDF5_TOOLS_SRC_H5PERF_perf_FORMAT perf)
+ endif ()
+ endif ()
+
+ #-- Adding test for h5perf
+ set (h5perf_SOURCES
+ ${HDF5_TOOLS_SRC_H5PERF_SOURCE_DIR}/pio_perf.c
+ ${HDF5_TOOLS_SRC_H5PERF_SOURCE_DIR}/pio_engine.c
+ )
+ add_executable (h5perf ${h5perf_SOURCES})
+ target_include_directories (h5perf PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ if (NOT ONLY_SHARED_LIBS)
+ TARGET_C_PROPERTIES (h5perf STATIC)
+ target_link_libraries (h5perf PRIVATE ${LINK_LIBS} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
+ else ()
+ TARGET_C_PROPERTIES (h5perf SHARED)
+ target_link_libraries (h5perf PRIVATE ${LINK_LIBS} ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
+ endif ()
+ set_target_properties (h5perf PROPERTIES FOLDER perform)
+ set_global_variable (HDF5_UTILS_TO_EXPORT "${HDF5_UTILS_TO_EXPORT};h5perf")
+
+ set (H5_DEP_EXECUTABLES h5perf)
+
+ #-----------------------------------------------------------------------------
+ # Add Target to clang-format
+ #-----------------------------------------------------------------------------
+ if (HDF5_ENABLE_FORMATTERS)
+ clang_format (HDF5_TOOLS_SRC_H5PERF_h5perf_FORMAT h5perf)
+ endif ()
+endif ()
+
+#-----------------------------------------------------------------------------
+# Rules for Installation of tools using make Install target
+#-----------------------------------------------------------------------------
+if (HDF5_EXPORTED_TARGETS)
+ foreach (exec ${H5_DEP_EXECUTABLES})
+ INSTALL_PROGRAM_PDB (${exec} ${HDF5_INSTALL_BIN_DIR} toolsapplications)
+ endforeach ()
+
+ install (
+ TARGETS
+ ${H5_DEP_EXECUTABLES}
+ EXPORT
+ ${HDF5_EXPORTED_TARGETS}
+ RUNTIME DESTINATION ${HDF5_INSTALL_BIN_DIR} COMPONENT toolsapplications
+ )
+endif ()
diff --git a/tools/src/h5perf/Makefile.am b/tools/src/h5perf/Makefile.am
new file mode 100644
index 0000000..e8a9fdd
--- /dev/null
+++ b/tools/src/h5perf/Makefile.am
@@ -0,0 +1,63 @@
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://www.hdfgroup.org/licenses.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+##
+#
+# HDF5 Library Performance Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/test -I$(top_srcdir)/tools/lib
+
+# bin_PROGRAMS will be installed.
+if BUILD_PARALLEL_CONDITIONAL
+ bin_PROGRAMS=h5perf_serial perf h5perf
+else
+ bin_PROGRAMS=h5perf_serial
+endif
+
+# Add h5perf and h5perf_serial specific linker flags here
+h5perf_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
+h5perf_serial_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
+
+# Some programs are not built or run by default, but can be built by hand or by
+# specifying --enable-build-all at configure time.
+# Also, some of these programs should only be built in parallel.
+# Currently there is no such program.
+if BUILD_PARALLEL_CONDITIONAL
+ PARA_BUILD_ALL=
+endif
+if BUILD_ALL_CONDITIONAL
+ BUILD_ALL_PROGS=$(PARA_BUILD_ALL)
+endif
+
+# Define programs that will be run in 'make check'
+# List them in the order they should be run.
+# Parallel test programs.
+if BUILD_PARALLEL_CONDITIONAL
+ TEST_PROG_PARA=h5perf perf
+endif
+
+h5perf_SOURCES=pio_perf.c pio_engine.c
+h5perf_serial_SOURCES=sio_perf.c sio_engine.c
+
+# All of the programs depend on the main hdf5 library, and some of them
+# depend on test or tools library.
+LDADD=$(LIBHDF5)
+h5perf_LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+h5perf_serial_LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+perf_LDADD=$(LIBHDF5)
+
+include $(top_srcdir)/config/conclude.am
diff --git a/tools/test/perform/perf.c b/tools/src/h5perf/perf.c
index 875f932..83d4ab0 100644
--- a/tools/test/perform/perf.c
+++ b/tools/src/h5perf/perf.c
@@ -22,7 +22,6 @@
#include "hdf5.h"
#include "H5private.h"
-#include "h5test.h"
#ifdef H5_HAVE_PARALLEL
@@ -108,6 +107,15 @@ static int parse_args(int argc, char **argv);
extern char *optarg;
#endif
+#ifndef HDF5_PARAPREFIX
+#define HDF5_PARAPREFIX ""
+#endif
+char * paraprefix = NULL; /* for command line option para-prefix */
+MPI_Info h5_io_info_g = MPI_INFO_NULL; /* MPI INFO object for IO */
+
+static char *h5_fixname_real(const char *base_name, hid_t fapl, const char *_suffix, char *fullname,
+ size_t size, hbool_t nest_printf, hbool_t subst_for_superblock);
+
int
main(int argc, char **argv)
{
@@ -206,7 +214,7 @@ main(int argc, char **argv)
}
}
- h5_fixname_no_suffix(FILENAME[0], acc_tpl, filename, sizeof filename);
+ h5_fixname_real(FILENAME[0], acc_tpl, NULL, filename, sizeof filename, FALSE, FALSE);
/* create the parallel file */
fid = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, acc_tpl);
@@ -451,6 +459,323 @@ parse_args(int argc, char **argv)
return (0);
}
+/*-------------------------------------------------------------------------
+ * Function: getenv_all
+ *
+ * Purpose: Used to get the environment that the root MPI task has.
+ * name specifies which environment variable to look for
+ * val is the string to which the value of that environment
+ * variable will be copied.
+ *
+ * NOTE: The pointer returned by this function is only
+ * valid until the next call to getenv_all and the data
+ * stored there must be copied somewhere else before any
+ * further calls to getenv_all take place.
+ *
+ * Return: pointer to a string containing the value of the environment variable
+ * NULL if the varialbe doesn't exist in task 'root's environment.
+ *
+ * Programmer: Leon Arber
+ * 4/4/05
+ *
+ * Modifications:
+ * Use original getenv if MPI is not initialized. This happens
+ * one uses the PHDF5 library to build a serial nature code.
+ * Albert 2006/04/07
+ *
+ *-------------------------------------------------------------------------
+ */
+char *
+getenv_all(MPI_Comm comm, int root, const char *name)
+{
+ int mpi_size, mpi_rank, mpi_initialized, mpi_finalized;
+ int len;
+ static char *env = NULL;
+
+ HDassert(name);
+
+ MPI_Initialized(&mpi_initialized);
+ MPI_Finalized(&mpi_finalized);
+
+ if (mpi_initialized && !mpi_finalized) {
+ MPI_Comm_rank(comm, &mpi_rank);
+ MPI_Comm_size(comm, &mpi_size);
+ HDassert(root < mpi_size);
+
+ /* The root task does the getenv call
+ * and sends the result to the other tasks */
+ if (mpi_rank == root) {
+ env = HDgetenv(name);
+ if (env) {
+ len = (int)HDstrlen(env);
+ MPI_Bcast(&len, 1, MPI_INT, root, comm);
+ MPI_Bcast(env, len, MPI_CHAR, root, comm);
+ }
+ else {
+ /* len -1 indicates that the variable was not in the environment */
+ len = -1;
+ MPI_Bcast(&len, 1, MPI_INT, root, comm);
+ }
+ }
+ else {
+ MPI_Bcast(&len, 1, MPI_INT, root, comm);
+ if (len >= 0) {
+ if (env == NULL)
+ env = (char *)HDmalloc((size_t)len + 1);
+ else if (HDstrlen(env) < (size_t)len)
+ env = (char *)HDrealloc(env, (size_t)len + 1);
+
+ MPI_Bcast(env, len, MPI_CHAR, root, comm);
+ env[len] = '\0';
+ }
+ else {
+ if (env)
+ HDfree(env);
+ env = NULL;
+ }
+ }
+#ifndef NDEBUG
+ MPI_Barrier(comm);
+#endif
+ }
+ else {
+ /* use original getenv */
+ if (env)
+ HDfree(env);
+ env = HDgetenv(name);
+ } /* end if */
+
+ return env;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: h5_fixname_real
+ *
+ * Purpose: Create a file name from a file base name like `test' and
+ * return it through the FULLNAME (at most SIZE characters
+ * counting the null terminator). The full name is created by
+ * prepending the contents of HDF5_PREFIX (separated from the
+ * base name by a slash) and appending a file extension based on
+ * the driver supplied, resulting in something like
+ * `ufs:/u/matzke/test.h5'.
+ *
+ * Return: Success: The FULLNAME pointer.
+ *
+ * Failure: NULL if BASENAME or FULLNAME is the null
+ * pointer or if FULLNAME isn't large enough for
+ * the result.
+ *
+ * Programmer: Robb Matzke
+ * Thursday, November 19, 1998
+ *
+ *-------------------------------------------------------------------------
+ */
+static char *
+h5_fixname_real(const char *base_name, hid_t fapl, const char *_suffix, char *fullname, size_t size,
+ hbool_t nest_printf, hbool_t subst_for_superblock)
+{
+ const char *prefix = NULL;
+ const char *env = NULL; /* HDF5_DRIVER environment variable */
+ char * ptr, last = '\0';
+ const char *suffix = _suffix;
+ size_t i, j;
+ hid_t driver = -1;
+ int isppdriver = 0; /* if the driver is MPI parallel */
+
+ if (!base_name || !fullname || size < 1)
+ return NULL;
+
+ HDmemset(fullname, 0, size);
+
+ /* figure out the suffix */
+ if (H5P_DEFAULT != fapl) {
+ if ((driver = H5Pget_driver(fapl)) < 0)
+ return NULL;
+
+ if (suffix) {
+ if (H5FD_FAMILY == driver) {
+ if (subst_for_superblock)
+ suffix = "00000.h5";
+ else
+ suffix = nest_printf ? "%%05d.h5" : "%05d.h5";
+ }
+ else if (H5FD_MULTI == driver) {
+
+ /* Get the environment variable, if it exists, in case
+ * we are using the split driver since both of those
+ * use the multi VFD under the hood.
+ */
+ env = HDgetenv("HDF5_DRIVER");
+#ifdef HDF5_DRIVER
+ /* Use the environment variable, then the compile-time constant */
+ if (!env)
+ env = HDF5_DRIVER;
+#endif
+ if (env && !HDstrcmp(env, "split")) {
+ /* split VFD */
+ if (subst_for_superblock)
+ suffix = "-m.h5";
+ else
+ suffix = NULL;
+ }
+ else {
+ /* multi VFD */
+ if (subst_for_superblock)
+ suffix = "-s.h5";
+ else
+ suffix = NULL;
+ }
+ }
+ }
+ }
+
+ /* Must first check fapl is not H5P_DEFAULT (-1) because H5FD_XXX
+ * could be of value -1 if it is not defined.
+ */
+ isppdriver = H5P_DEFAULT != fapl && (H5FD_MPIO == driver);
+
+ /* Check what prefix to use for test files. Process HDF5_PARAPREFIX and
+ * HDF5_PREFIX.
+ * Use different ones depending on parallel or serial driver used.
+ * (The #ifdef is needed to prevent compile failure in case MPI is not
+ * configured.)
+ */
+ if (isppdriver) {
+ /*
+ * For parallel:
+ * First use command line option, then the environment
+ * variable, then try the constant
+ */
+ static int explained = 0;
+
+ prefix = (paraprefix ? paraprefix : getenv_all(MPI_COMM_WORLD, 0, "HDF5_PARAPREFIX"));
+
+ if (!prefix && !explained) {
+ /* print hint by process 0 once. */
+ int mpi_rank;
+
+ MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
+
+ if (mpi_rank == 0)
+ HDprintf("*** Hint ***\n"
+ "You can use environment variable HDF5_PARAPREFIX to "
+ "run parallel test files in a\n"
+ "different directory or to add file type prefix. e.g.,\n"
+ " HDF5_PARAPREFIX=pfs:/PFS/user/me\n"
+ " export HDF5_PARAPREFIX\n"
+ "*** End of Hint ***\n");
+
+ explained = TRUE;
+#ifdef HDF5_PARAPREFIX
+ prefix = HDF5_PARAPREFIX;
+#endif /* HDF5_PARAPREFIX */
+ }
+ }
+ else {
+ /*
+ * For serial:
+ * First use the environment variable, then try the constant
+ */
+ prefix = HDgetenv("HDF5_PREFIX");
+
+#ifdef HDF5_PREFIX
+ if (!prefix)
+ prefix = HDF5_PREFIX;
+#endif /* HDF5_PREFIX */
+ }
+
+ /* Prepend the prefix value to the base name */
+ if (prefix && *prefix) {
+ if (isppdriver) {
+ /* This is a parallel system */
+ char *subdir;
+
+ if (!HDstrcmp(prefix, HDF5_PARAPREFIX)) {
+ /*
+ * If the prefix specifies the HDF5_PARAPREFIX directory, then
+ * default to using the "/tmp/$USER" or "/tmp/$LOGIN"
+ * directory instead.
+ */
+ char *user, *login;
+
+ user = HDgetenv("USER");
+ login = HDgetenv("LOGIN");
+ subdir = (user ? user : login);
+
+ if (subdir) {
+ for (i = 0; i < size && prefix[i]; i++)
+ fullname[i] = prefix[i];
+
+ fullname[i++] = '/';
+
+ for (j = 0; i < size && subdir[j]; ++i, ++j)
+ fullname[i] = subdir[j];
+ }
+ }
+
+ if (!fullname[0]) {
+ /* We didn't append the prefix yet */
+ HDstrncpy(fullname, prefix, size);
+ fullname[size - 1] = '\0';
+ }
+
+ if (HDstrlen(fullname) + HDstrlen(base_name) + 1 < size) {
+ /*
+ * Append the base_name with a slash first. Multiple
+ * slashes are handled below.
+ */
+ h5_stat_t buf;
+
+ if (HDstat(fullname, &buf) < 0)
+ /* The directory doesn't exist just yet */
+ if (HDmkdir(fullname, (mode_t)0755) < 0 && errno != EEXIST)
+ /*
+ * We couldn't make the "/tmp/${USER,LOGIN}"
+ * subdirectory. Default to PREFIX's original
+ * prefix value.
+ */
+ HDstrcpy(fullname, prefix);
+
+ HDstrcat(fullname, "/");
+ HDstrcat(fullname, base_name);
+ }
+ else {
+ /* Buffer is too small */
+ return NULL;
+ }
+ }
+ else {
+ if (HDsnprintf(fullname, size, "%s/%s", prefix, base_name) == (int)size)
+ /* Buffer is too small */
+ return NULL;
+ }
+ }
+ else if (HDstrlen(base_name) >= size) {
+ /* Buffer is too small */
+ return NULL;
+ }
+ else {
+ HDstrcpy(fullname, base_name);
+ }
+
+ /* Append a suffix */
+ if (suffix) {
+ if (HDstrlen(fullname) + HDstrlen(suffix) >= size)
+ return NULL;
+
+ HDstrcat(fullname, suffix);
+ }
+
+ /* Remove any double slashes in the filename */
+ for (ptr = fullname, i = j = 0; ptr && i < size; i++, ptr++) {
+ if (*ptr != '/' || last != '/')
+ fullname[j++] = *ptr;
+
+ last = *ptr;
+ }
+
+ return fullname;
+}
/*
* Local variables:
diff --git a/tools/test/perform/pio_engine.c b/tools/src/h5perf/pio_engine.c
index cac36d7..cac36d7 100644
--- a/tools/test/perform/pio_engine.c
+++ b/tools/src/h5perf/pio_engine.c
diff --git a/tools/test/perform/pio_perf.c b/tools/src/h5perf/pio_perf.c
index d38c574..96cba2d 100644
--- a/tools/test/perform/pio_perf.c
+++ b/tools/src/h5perf/pio_perf.c
@@ -113,6 +113,12 @@ int pio_debug_level = 0; /* The debug level:
/* local variables */
static const char *progname = "h5perf";
+#ifndef HDF5_PARAPREFIX
+#define HDF5_PARAPREFIX ""
+#endif
+char * paraprefix = NULL; /* for command line option para-prefix */
+MPI_Info h5_io_info_g = MPI_INFO_NULL; /* MPI INFO object for IO */
+
/*
* Command-line options: The user can specify short or long-named
* parameters. The long-named ones can be partially spelled. When
@@ -850,6 +856,135 @@ output_all_info(minmax *mm, int count, int indent_level)
}
/*
+ * Function: h5_set_info_object
+ * Purpose: Process environment variables setting to set up MPI Info
+ * object.
+ * Return: 0 if all is fine; otherwise non-zero.
+ * Programmer: Albert Cheng, 2002/05/21.
+ * Modifications:
+ * Bill Wendling, 2002/05/31
+ * Modified so that the HDF5_MPI_INFO environment variable can
+ * be a semicolon separated list of "key=value" pairings. Most
+ * of the code is to remove any whitespaces which might be
+ * surrounding the "key=value" pairs.
+ */
+int
+h5_set_info_object(void)
+{
+ char *envp; /* environment pointer */
+ int ret_value = 0;
+
+ /* handle any MPI INFO hints via $HDF5_MPI_INFO */
+ if ((envp = HDgetenv("HDF5_MPI_INFO")) != NULL) {
+ char *next, *valp;
+
+ valp = envp = next = HDstrdup(envp);
+
+ if (!valp)
+ return 0;
+
+ /* create an INFO object if not created yet */
+ if (h5_io_info_g == MPI_INFO_NULL)
+ MPI_Info_create(&h5_io_info_g);
+
+ do {
+ size_t len;
+ char * key_val, *endp, *namep;
+
+ if (*valp == ';')
+ valp++;
+
+ /* copy key/value pair into temporary buffer */
+ len = strcspn(valp, ";");
+ next = &valp[len];
+ key_val = (char *)HDcalloc(1, len + 1);
+
+ /* increment the next pointer past the terminating semicolon */
+ if (*next == ';')
+ ++next;
+
+ namep = HDstrncpy(key_val, valp, len);
+
+ /* pass up any beginning whitespaces */
+ while (*namep && (*namep == ' ' || *namep == '\t'))
+ namep++;
+
+ if (!*namep)
+ continue; /* was all white space, so move to next k/v pair */
+
+ /* eat up any ending white spaces */
+ endp = &namep[HDstrlen(namep) - 1];
+
+ while (endp && (*endp == ' ' || *endp == '\t'))
+ *endp-- = '\0';
+
+ /* find the '=' */
+ valp = HDstrchr(namep, '=');
+
+ if (valp != NULL) { /* it's a valid key/value pairing */
+ char *tmp_val = valp + 1;
+
+ /* change '=' to \0, move valp down one */
+ *valp-- = '\0';
+
+ /* eat up ending whitespace on the "key" part */
+ while (*valp == ' ' || *valp == '\t')
+ *valp-- = '\0';
+
+ valp = tmp_val;
+
+ /* eat up beginning whitespace on the "value" part */
+ while (*valp == ' ' || *valp == '\t')
+ *valp++ = '\0';
+
+ /* actually set the darned thing */
+ if (MPI_SUCCESS != MPI_Info_set(h5_io_info_g, namep, valp)) {
+ HDprintf("MPI_Info_set failed\n");
+ ret_value = -1;
+ }
+ }
+
+ valp = next;
+ HDfree(key_val);
+ } while (next && *next);
+
+ HDfree(envp);
+ }
+
+ return ret_value;
+}
+
+/*
+ * Function: h5_dump_info_object
+ * Purpose: Display content of an MPI Info object
+ * Return: void
+ * Programmer: Albert Cheng 2002/05/21
+ * Modifications:
+ */
+void
+h5_dump_info_object(MPI_Info info)
+{
+ char key[MPI_MAX_INFO_KEY + 1];
+ char value[MPI_MAX_INFO_VAL + 1];
+ int flag;
+ int i, nkeys;
+
+ HDprintf("Dumping MPI Info Object (up to %d bytes per item):\n", MPI_MAX_INFO_VAL);
+ if (info == MPI_INFO_NULL) {
+ HDprintf("object is MPI_INFO_NULL\n");
+ }
+ else {
+ MPI_Info_get_nkeys(info, &nkeys);
+ HDprintf("object has %d items\n", nkeys);
+ for (i = 0; i < nkeys; i++) {
+ MPI_Info_get_nthkey(info, i, key);
+ MPI_Info_get(info, key, MPI_MAX_INFO_VAL, value, &flag);
+ HDprintf("%s=%s\n", key, value);
+ }
+ }
+}
+
+/*
* Function: get_minmax
* Purpose: Gather all the min, max and total of val.
* Return: Nothing
diff --git a/tools/test/perform/pio_perf.h b/tools/src/h5perf/pio_perf.h
index 24621da..8924c20 100644
--- a/tools/test/perform/pio_perf.h
+++ b/tools/src/h5perf/pio_perf.h
@@ -15,7 +15,7 @@
#ifndef STANDALONE
#include "io_timer.h"
-#include "h5test.h"
+#include "H5private.h"
#include "h5tools.h"
#include "h5tools_utils.h"
#else
@@ -23,6 +23,15 @@
#include "pio_standalone.h"
#endif
+#ifdef H5_HAVE_PARALLEL
+extern MPI_Info h5_io_info_g; /* MPI INFO object for IO */
+#endif
+
+#ifdef H5_HAVE_PARALLEL
+int h5_set_info_object(void);
+void h5_dump_info_object(MPI_Info info);
+#endif
+
/* setup the dataset no fill option if this is v1.5 or more */
#if H5_VERS_MAJOR > 1 || H5_VERS_MINOR > 4
#define H5_HAVE_NOFILL 1
diff --git a/tools/test/perform/sio_engine.c b/tools/src/h5perf/sio_engine.c
index 1af2318..1af2318 100644
--- a/tools/test/perform/sio_engine.c
+++ b/tools/src/h5perf/sio_engine.c
diff --git a/tools/test/perform/sio_perf.c b/tools/src/h5perf/sio_perf.c
index 51a7825..51a7825 100644
--- a/tools/test/perform/sio_perf.c
+++ b/tools/src/h5perf/sio_perf.c
diff --git a/tools/test/perform/sio_perf.h b/tools/src/h5perf/sio_perf.h
index 6242782..d998377 100644
--- a/tools/test/perform/sio_perf.h
+++ b/tools/src/h5perf/sio_perf.h
@@ -15,7 +15,7 @@
#ifndef STANDALONE
#include "io_timer.h"
-#include "h5test.h"
+#include "H5private.h"
#include "h5tools.h"
#include "h5tools_utils.h"
#else
diff --git a/tools/test/perform/CMakeLists.txt b/tools/test/perform/CMakeLists.txt
index 7399723..7bf79c5 100644
--- a/tools/test/perform/CMakeLists.txt
+++ b/tools/test/perform/CMakeLists.txt
@@ -4,39 +4,17 @@ project (HDF5_TOOLS_TEST_PERFORM C)
# --------------------------------------------------------------------
# Add the executables
# --------------------------------------------------------------------
-#-- Adding test for h5perf_serial
-set (h5perf_serial_SOURCES
- ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/sio_perf.c
- ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/sio_engine.c
-)
-add_executable (h5perf_serial ${h5perf_serial_SOURCES})
-target_include_directories (h5perf_serial PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
-if (NOT BUILD_SHARED_LIBS)
- TARGET_C_PROPERTIES (h5perf_serial STATIC)
- target_link_libraries (h5perf_serial PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
-else ()
- TARGET_C_PROPERTIES (h5perf_serial SHARED)
- target_link_libraries (h5perf_serial PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
-endif ()
-set_target_properties (h5perf_serial PROPERTIES FOLDER perform)
-
-#-----------------------------------------------------------------------------
-# Add Target to clang-format
-#-----------------------------------------------------------------------------
-if (HDF5_ENABLE_FORMATTERS)
- clang_format (HDF5_TOOLS_TEST_PERFORM_h5perf_serial_FORMAT h5perf_serial)
-endif ()
if (HDF5_BUILD_PERFORM_STANDALONE)
#-- Adding test for h5perf_serial_alone - io_timer.c includes
set (h5perf_serial_alone_SOURCES
${HDF5_TOOLS_DIR}/lib/io_timer.c
- ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/sio_perf.c
- ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/sio_engine.c
+ ${HDF5_TOOLS_SRC_H5PERF_SOURCE_DIR}/sio_perf.c
+ ${HDF5_TOOLS_SRC_H5PERF_SOURCE_DIR}/sio_engine.c
${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/sio_standalone.c
)
add_executable (h5perf_serial_alone ${h5perf_serial_alone_SOURCES})
- target_include_directories (h5perf_serial_alone PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};${HDF5_TOOLS_DIR}/lib;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ target_include_directories (h5perf_serial_alone PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};${HDF5_TOOLS_DIR}/lib;${HDF5_TOOLS_SRC_H5PERF_SOURCE_DIR};${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
if (NOT BUILD_SHARED_LIBS)
TARGET_C_PROPERTIES (h5perf_serial_alone STATIC)
target_link_libraries (h5perf_serial_alone PRIVATE ${HDF5_LIB_TARGET} "$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_LIBRARIES}>")
@@ -188,63 +166,16 @@ if (HDF5_ENABLE_FORMATTERS)
endif ()
if (H5_HAVE_PARALLEL AND HDF5_TEST_PARALLEL)
- if (UNIX)
- #-- Adding test for perf - only on unix systems
- set (perf_SOURCES
- ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/perf.c
- )
- add_executable (perf ${perf_SOURCES})
- target_include_directories (perf PRIVATE "${HDF5_TEST_SRC_DIR};${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
- if (NOT BUILD_SHARED_LIBS)
- TARGET_C_PROPERTIES (perf STATIC)
- target_link_libraries (perf PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET} ${HDF5_LIB_TARGET})
- else ()
- TARGET_C_PROPERTIES (perf SHARED)
- target_link_libraries (perf PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_TEST_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
- endif ()
- set_target_properties (perf PROPERTIES FOLDER perform)
-
- #-----------------------------------------------------------------------------
- # Add Target to clang-format
- #-----------------------------------------------------------------------------
- if (HDF5_ENABLE_FORMATTERS)
- clang_format (HDF5_TOOLS_TEST_PERFORM_perf_FORMAT perf)
- endif ()
- endif ()
-
- #-- Adding test for h5perf
- set (h5perf_SOURCES
- ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/pio_perf.c
- ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/pio_engine.c
- )
- add_executable (h5perf ${h5perf_SOURCES})
- target_include_directories (h5perf PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
- if (NOT BUILD_SHARED_LIBS)
- TARGET_C_PROPERTIES (h5perf STATIC)
- target_link_libraries (h5perf PRIVATE ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET} ${HDF5_LIB_TARGET})
- else ()
- TARGET_C_PROPERTIES (h5perf SHARED)
- target_link_libraries (h5perf PRIVATE ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_TEST_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
- endif ()
- set_target_properties (h5perf PROPERTIES FOLDER perform)
-
- #-----------------------------------------------------------------------------
- # Add Target to clang-format
- #-----------------------------------------------------------------------------
- if (HDF5_ENABLE_FORMATTERS)
- clang_format (HDF5_TOOLS_TEST_PERFORM_h5perf_FORMAT h5perf)
- endif ()
-
if (HDF5_BUILD_PERFORM_STANDALONE)
#-- Adding test for h5perf
set (h5perf_alone_SOURCES
${HDF5_TOOLS_DIR}/lib/io_timer.c
- ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/pio_perf.c
- ${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/pio_engine.c
+ ${HDF5_TOOLS_SRC_H5PERF_SOURCE_DIR}/pio_perf.c
+ ${HDF5_TOOLS_SRC_H5PERF_SOURCE_DIR}/pio_engine.c
${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR}/pio_standalone.c
)
add_executable (h5perf_alone ${h5perf_alone_SOURCES})
- target_include_directories (h5perf_alone PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};${HDF5_TOOLS_DIR}/lib;$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+ target_include_directories (h5perf_alone PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};${HDF5_TOOLS_DIR}/lib;${HDF5_TOOLS_SRC_H5PERF_SOURCE_DIR};${HDF5_TOOLS_TEST_PERFORM_SOURCE_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
if (NOT BUILD_SHARED_LIBS)
TARGET_C_PROPERTIES (h5perf_alone STATIC)
target_link_libraries (h5perf_alone PRIVATE ${HDF5_LIB_TARGET} ${LINK_LIBS} "$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_LIBRARIES}>")
diff --git a/tools/test/perform/Makefile.am b/tools/test/perform/Makefile.am
index 244ef3a..10b13fe 100644
--- a/tools/test/perform/Makefile.am
+++ b/tools/test/perform/Makefile.am
@@ -21,17 +21,6 @@ include $(top_srcdir)/config/commence.am
AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/test -I$(top_srcdir)/tools/lib
-# bin_PROGRAMS will be installed.
-if BUILD_PARALLEL_CONDITIONAL
- bin_PROGRAMS=h5perf_serial h5perf
-else
- bin_PROGRAMS=h5perf_serial
-endif
-
-# Add h5perf and h5perf_serial specific linker flags here
-h5perf_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
-h5perf_serial_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
-
# Some programs are not built or run by default, but can be built by hand or by
# specifying --enable-build-all at configure time.
# Also, some of these programs should only be built in parallel.
@@ -47,18 +36,15 @@ endif
# List them in the order they should be run.
# Parallel test programs.
if BUILD_PARALLEL_CONDITIONAL
- TEST_PROG_PARA=h5perf perf
+ TEST_PROG_PARA=
endif
# Serial test programs.
-TEST_PROG = iopipe chunk chunk_cache overhead zip_perf perf_meta h5perf_serial $(BUILD_ALL_PROGS)
+TEST_PROG = iopipe chunk chunk_cache overhead zip_perf perf_meta $(BUILD_ALL_PROGS)
# check_PROGRAMS will be built but not installed. Do not any executable
# that is in bin_PROGRAMS already. Otherwise, it will be removed twice in
# "make clean" and some systems, e.g., AIX, do not like it.
-check_PROGRAMS= iopipe chunk chunk_cache overhead zip_perf perf_meta $(BUILD_ALL_PROGS) perf
-
-h5perf_SOURCES=pio_perf.c pio_engine.c
-h5perf_serial_SOURCES=sio_perf.c sio_engine.c
+check_PROGRAMS= $(TEST_PROG) $(BUILD_ALL_PROGS)
# These are the files that `make clean' (and derivatives) will remove from
# this directory.
@@ -67,9 +53,6 @@ CLEANFILES=*.h5 *.raw *.dat x-gnuplot perftest.out
# All of the programs depend on the main hdf5 library, and some of them
# depend on test or tools library.
LDADD=$(LIBHDF5)
-h5perf_LDADD=$(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5)
-h5perf_serial_LDADD=$(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5)
-perf_LDADD=$(LIBH5TEST) $(LIBHDF5)
iopipe_LDADD=$(LIBH5TEST) $(LIBHDF5)
zip_perf_LDADD=$(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5)
perf_meta_LDADD=$(LIBH5TEST) $(LIBHDF5)
diff --git a/tools/test/perform/pio_standalone.c b/tools/test/perform/pio_standalone.c
index ded15a4..032bfba 100644
--- a/tools/test/perform/pio_standalone.c
+++ b/tools/test/perform/pio_standalone.c
@@ -17,10 +17,6 @@
#include "pio_perf.h"
-#ifdef STANDALONE
-MPI_Info h5_io_info_g = MPI_INFO_NULL; /* MPI INFO object for IO */
-#endif
-
/** From h5tools_utils.c **/
/* global variables */
@@ -156,134 +152,3 @@ print_version(const char *progname)
printf("%s: Version %u.%u.%u%s%s\n", progname, H5_VERS_MAJOR, H5_VERS_MINOR, H5_VERS_RELEASE,
H5_VERS_SUBRELEASE[0] ? "-" : "", H5_VERS_SUBRELEASE);
}
-
-#ifdef STANDALONE
-/*
- * Function: h5_set_info_object
- * Purpose: Process environment variables setting to set up MPI Info
- * object.
- * Return: 0 if all is fine; otherwise non-zero.
- * Programmer: Albert Cheng, 2002/05/21.
- * Modifications:
- * Bill Wendling, 2002/05/31
- * Modified so that the HDF5_MPI_INFO environment variable can
- * be a semicolon separated list of "key=value" pairings. Most
- * of the code is to remove any whitespaces which might be
- * surrounding the "key=value" pairs.
- */
-int
-h5_set_info_object(void)
-{
- char *envp; /* environment pointer */
- int ret_value = 0;
-
- /* handle any MPI INFO hints via $HDF5_MPI_INFO */
- if ((envp = HDgetenv("HDF5_MPI_INFO")) != NULL) {
- char *next, *valp;
-
- valp = envp = next = HDstrdup(envp);
-
- if (!valp)
- return 0;
-
- /* create an INFO object if not created yet */
- if (h5_io_info_g == MPI_INFO_NULL)
- MPI_Info_create(&h5_io_info_g);
-
- do {
- size_t len;
- char * key_val, *endp, *namep;
-
- if (*valp == ';')
- valp++;
-
- /* copy key/value pair into temporary buffer */
- len = strcspn(valp, ";");
- next = &valp[len];
- key_val = (char *)HDcalloc(1, len + 1);
-
- /* increment the next pointer past the terminating semicolon */
- if (*next == ';')
- ++next;
-
- namep = HDstrncpy(key_val, valp, len);
-
- /* pass up any beginning whitespaces */
- while (*namep && (*namep == ' ' || *namep == '\t'))
- namep++;
-
- if (!*namep)
- continue; /* was all white space, so move to next k/v pair */
-
- /* eat up any ending white spaces */
- endp = &namep[HDstrlen(namep) - 1];
-
- while (endp && (*endp == ' ' || *endp == '\t'))
- *endp-- = '\0';
-
- /* find the '=' */
- valp = HDstrchr(namep, '=');
-
- if (valp != NULL) { /* it's a valid key/value pairing */
- char *tmp_val = valp + 1;
-
- /* change '=' to \0, move valp down one */
- *valp-- = '\0';
-
- /* eat up ending whitespace on the "key" part */
- while (*valp == ' ' || *valp == '\t')
- *valp-- = '\0';
-
- valp = tmp_val;
-
- /* eat up beginning whitespace on the "value" part */
- while (*valp == ' ' || *valp == '\t')
- *valp++ = '\0';
-
- /* actually set the darned thing */
- if (MPI_SUCCESS != MPI_Info_set(h5_io_info_g, namep, valp)) {
- HDprintf("MPI_Info_set failed\n");
- ret_value = -1;
- }
- }
-
- valp = next;
- HDfree(key_val);
- } while (next && *next);
-
- HDfree(envp);
- }
-
- return ret_value;
-}
-
-/*
- * Function: h5_dump_info_object
- * Purpose: Display content of an MPI Info object
- * Return: void
- * Programmer: Albert Cheng 2002/05/21
- * Modifications:
- */
-void
-h5_dump_info_object(MPI_Info info)
-{
- char key[MPI_MAX_INFO_KEY + 1];
- char value[MPI_MAX_INFO_VAL + 1];
- int flag;
- int i, nkeys;
-
- HDprintf("Dumping MPI Info Object (up to %d bytes per item):\n", MPI_MAX_INFO_VAL);
- if (info == MPI_INFO_NULL) {
- HDprintf("object is MPI_INFO_NULL\n");
- }
- else {
- MPI_Info_get_nkeys(info, &nkeys);
- HDprintf("object has %d items\n", nkeys);
- for (i = 0; i < nkeys; i++) {
- MPI_Info_get_nthkey(info, i, key);
- MPI_Info_get(info, key, MPI_MAX_INFO_VAL, value, &flag);
- HDprintf("%s=%s\n", key, value);
- }
- }
-}
-#endif /* STANDALONE */
diff --git a/tools/test/perform/pio_standalone.h b/tools/test/perform/pio_standalone.h
index ef6d97b..f1fb946 100644
--- a/tools/test/perform/pio_standalone.h
+++ b/tools/test/perform/pio_standalone.h
@@ -441,17 +441,6 @@ extern char * strdup(const char *s);
#define TRUE true
#endif
-/** From h5test.h **/
-
-#ifdef H5_HAVE_PARALLEL
-extern MPI_Info h5_io_info_g; /* MPI INFO object for IO */
-#endif
-
-#ifdef H5_HAVE_PARALLEL
-int h5_set_info_object(void);
-void h5_dump_info_object(MPI_Info info);
-#endif
-
/** From h5tools_utils.h **/
H5_DLLVAR int H5_opterr; /* getoption prints errors if this is on */
diff --git a/tools/test/perform/sio_standalone.h b/tools/test/perform/sio_standalone.h
index 3b699dc..99cca75 100644
--- a/tools/test/perform/sio_standalone.h
+++ b/tools/test/perform/sio_standalone.h
@@ -456,17 +456,6 @@ extern char * strdup(const char *s);
#define TRUE true
#endif
-/** From h5test.h **/
-
-#ifdef H5_HAVE_PARALLEL
-extern MPI_Info h5_io_info_g; /* MPI INFO object for IO */
-#endif
-
-#ifdef H5_HAVE_PARALLEL
-int h5_set_info_object(void);
-void h5_dump_info_object(MPI_Info info);
-#endif
-
/** From h5tools_utils.h **/
H5_DLLVAR int H5_opterr; /* getoption prints errors if this is on */
generated by cgit v0.12 at 2024-11-01 07:45:20 (GMT)