diff options
Diffstat (limited to 'tools')
64 files changed, 1978 insertions, 1559 deletions
diff --git a/tools/Makefile.in b/tools/Makefile.in index 70cc001..70e11ae 100644 --- a/tools/Makefile.in +++ b/tools/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -32,6 +31,23 @@ # Tools HDF5 Makefile(.in) # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -51,24 +67,31 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am COPYING TESTS = subdir = tools ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = CONFIG_CLEAN_VPATH_FILES = -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) am__v_at_0 = @ +am__v_at_1 = SOURCES = DIST_SOURCES = RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ @@ -78,6 +101,11 @@ RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ install-pdf-recursive install-ps-recursive install-recursive \ installcheck-recursive installdirs-recursive pdf-recursive \ ps-recursive uninstall-recursive +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \ distclean-recursive maintainer-clean-recursive AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ @@ -85,8 +113,10 @@ AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ distdir ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DIST_SUBDIRS = $(SUBDIRS) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) am__relativize = \ @@ -114,7 +144,7 @@ am__relativize = \ dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \ done; \ reldir="$$dir2" -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -132,12 +162,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -411,6 +438,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -439,6 +470,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -456,12 +488,12 @@ clean-libtool: -rm -rf .libs _libs # This directory's subdirectories are mostly independent; you can cd -# into them and run `make' without going through this Makefile. -# To change the values of `make' variables: instead of editing Makefiles, -# (1) if the variable is set in `config.status', edit `config.status' -# (which will cause the Makefiles to be regenerated when you run `make'); -# (2) otherwise, pass the desired values on the `make' command line. -$(RECURSIVE_TARGETS): +# into them and run 'make' without going through this Makefile. +# To change the values of 'make' variables: instead of editing Makefiles, +# (1) if the variable is set in 'config.status', edit 'config.status' +# (which will cause the Makefiles to be regenerated when you run 'make'); +# (2) otherwise, pass the desired values on the 'make' command line. +$(RECURSIVE_TARGETS) $(RECURSIVE_CLEAN_TARGETS): @fail= failcom='exit 1'; \ for f in x $$MAKEFLAGS; do \ case $$f in \ @@ -471,7 +503,11 @@ $(RECURSIVE_TARGETS): done; \ dot_seen=no; \ target=`echo $@ | sed s/-recursive//`; \ - list='$(SUBDIRS)'; for subdir in $$list; do \ + case "$@" in \ + distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ + *) list='$(SUBDIRS)' ;; \ + esac; \ + for subdir in $$list; do \ echo "Making $$target in $$subdir"; \ if test "$$subdir" = "."; then \ dot_seen=yes; \ @@ -485,37 +521,6 @@ $(RECURSIVE_TARGETS): if test "$$dot_seen" = "no"; then \ $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \ fi; test -z "$$fail" - -$(RECURSIVE_CLEAN_TARGETS): - @fail= failcom='exit 1'; \ - for f in x $$MAKEFLAGS; do \ - case $$f in \ - *=* | --[!k]*);; \ - *k*) failcom='fail=yes';; \ - esac; \ - done; \ - dot_seen=no; \ - case "$@" in \ - distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \ - *) list='$(SUBDIRS)' ;; \ - esac; \ - rev=''; for subdir in $$list; do \ - if test "$$subdir" = "."; then :; else \ - rev="$$subdir $$rev"; \ - fi; \ - done; \ - rev="$$rev ."; \ - target=`echo $@ | sed s/-recursive//`; \ - for subdir in $$rev; do \ - echo "Making $$target in $$subdir"; \ - if test "$$subdir" = "."; then \ - local_target="$$target-am"; \ - else \ - local_target="$$target"; \ - fi; \ - ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \ - || eval $$failcom; \ - done && test -z "$$fail" tags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \ @@ -524,6 +529,10 @@ ctags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \ done +cscopelist-recursive: + list='$(SUBDIRS)'; for subdir in $$list; do \ + test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) cscopelist); \ + done ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ @@ -587,6 +596,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: cscopelist-recursive $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -622,13 +645,10 @@ distdir: $(DISTFILES) done @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ if test "$$subdir" = .; then :; else \ - test -d "$(distdir)/$$subdir" \ - || $(MKDIR_P) "$(distdir)/$$subdir" \ - || exit 1; \ - fi; \ - done - @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ - if test "$$subdir" = .; then :; else \ + $(am__make_dryrun) \ + || test -d "$(distdir)/$$subdir" \ + || $(MKDIR_P) "$(distdir)/$$subdir" \ + || exit 1; \ dir1=$$subdir; dir2="$(distdir)/$$subdir"; \ $(am__relativize); \ new_distdir=$$reldir; \ @@ -664,10 +684,15 @@ install-am: all-am installcheck: installcheck-recursive install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -747,21 +772,23 @@ ps-am: uninstall-am: .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) check-am \ - ctags-recursive install-am install-strip tags-recursive + cscopelist-recursive ctags-recursive install-am install-strip \ + tags-recursive .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \ all all-am all-local check check-TESTS check-am clean \ - clean-generic clean-libtool ctags ctags-recursive distclean \ - distclean-generic distclean-libtool distclean-tags distdir dvi \ - dvi-am html html-am info info-am install install-am \ - install-data install-data-am install-dvi install-dvi-am \ - install-exec install-exec-am install-html install-html-am \ - install-info install-info-am install-man install-pdf \ - install-pdf-am install-ps install-ps-am install-strip \ - installcheck installcheck-am installdirs installdirs-am \ - maintainer-clean maintainer-clean-generic mostlyclean \ - mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ - pdf-am ps ps-am tags tags-recursive uninstall uninstall-am + clean-generic clean-libtool cscopelist cscopelist-recursive \ + ctags ctags-recursive distclean distclean-generic \ + distclean-libtool distclean-tags distdir dvi dvi-am html \ + html-am info info-am install install-am install-data \ + install-data-am install-dvi install-dvi-am install-exec \ + install-exec-am install-html install-html-am install-info \ + install-info-am install-man install-pdf install-pdf-am \ + install-ps install-ps-am install-strip installcheck \ + installcheck-am installdirs installdirs-am maintainer-clean \ + maintainer-clean-generic mostlyclean mostlyclean-generic \ + mostlyclean-libtool mostlyclean-local pdf pdf-am ps ps-am tags \ + tags-recursive uninstall uninstall-am # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -779,7 +806,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -805,7 +832,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -829,7 +856,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -839,7 +866,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -929,7 +956,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -959,7 +986,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5copy/CMakeLists.txt b/tools/h5copy/CMakeLists.txt index 94eb732..95341a2 100644 --- a/tools/h5copy/CMakeLists.txt +++ b/tools/h5copy/CMakeLists.txt @@ -375,7 +375,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5copy ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5copy ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5copy/Makefile.am b/tools/h5copy/Makefile.am index dd0c5c3..47e8685 100644 --- a/tools/h5copy/Makefile.am +++ b/tools/h5copy/Makefile.am @@ -25,7 +25,8 @@ INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib # Test programs and scripts TEST_PROG=h5copygentest -TEST_SCRIPT=$(srcdir)/testh5copy.sh +TEST_SCRIPT=testh5copy.sh + check_SCRIPTS=$(TEST_SCRIPT) SCRIPT_DEPEND=h5copy$(EXEEXT) diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in index b71ee70..da9d0b7 100644 --- a/tools/h5copy/Makefile.in +++ b/tools/h5copy/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,19 +68,21 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(srcdir)/testh5copy.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am bin_PROGRAMS = h5copy$(EXEEXT) check_PROGRAMS = $(am__EXEEXT_1) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT) subdir = tools/h5copy ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h -CONFIG_CLEAN_FILES = +CONFIG_CLEAN_FILES = testh5copy.sh CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" am__EXEEXT_1 = h5copygentest$(EXEEXT) @@ -73,9 +91,10 @@ h5copy_SOURCES = h5copy.c h5copy_OBJECTS = h5copy.$(OBJEXT) h5copy_LDADD = $(LDADD) h5copy_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5copy_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(h5copy_LDFLAGS) $(LDFLAGS) -o $@ @@ -83,6 +102,18 @@ am_h5copygentest_OBJECTS = h5copygentest.$(OBJEXT) h5copygentest_OBJECTS = $(am_h5copygentest_OBJECTS) h5copygentest_LDADD = $(LDADD) h5copygentest_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -93,30 +124,33 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = h5copy.c $(h5copygentest_SOURCES) DIST_SOURCES = h5copy.c $(h5copygentest_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -134,12 +168,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -406,7 +437,7 @@ INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib # Test programs and scripts TEST_PROG = h5copygentest -TEST_SCRIPT = $(srcdir)/testh5copy.sh +TEST_SCRIPT = testh5copy.sh check_SCRIPTS = $(TEST_SCRIPT) SCRIPT_DEPEND = h5copy$(EXEEXT) @@ -430,6 +461,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -459,6 +494,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -468,10 +504,15 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(am__aclocal_m4_deps): +testh5copy.sh: $(top_builddir)/config.status $(srcdir)/testh5copy.sh.in + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -520,10 +561,10 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -h5copy$(EXEEXT): $(h5copy_OBJECTS) $(h5copy_DEPENDENCIES) +h5copy$(EXEEXT): $(h5copy_OBJECTS) $(h5copy_DEPENDENCIES) $(EXTRA_h5copy_DEPENDENCIES) @rm -f h5copy$(EXEEXT) $(AM_V_CCLD)$(h5copy_LINK) $(h5copy_OBJECTS) $(h5copy_LDADD) $(LIBS) -h5copygentest$(EXEEXT): $(h5copygentest_OBJECTS) $(h5copygentest_DEPENDENCIES) +h5copygentest$(EXEEXT): $(h5copygentest_OBJECTS) $(h5copygentest_DEPENDENCIES) $(EXTRA_h5copygentest_DEPENDENCIES) @rm -f h5copygentest$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5copygentest_OBJECTS) $(h5copygentest_LDADD) $(LIBS) @@ -539,26 +580,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -615,6 +653,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -667,10 +719,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -757,7 +814,7 @@ uninstall-am: uninstall-binPROGRAMS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool ctags distclean distclean-compile \ + clean-libtool cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-data install-data-am install-dvi \ @@ -786,7 +843,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -812,7 +869,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -836,7 +893,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -846,7 +903,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -936,7 +993,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -966,7 +1023,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5copy/testh5copy.sh b/tools/h5copy/testh5copy.sh.in index 0529d53..c7acd9a 100644 --- a/tools/h5copy/testh5copy.sh +++ b/tools/h5copy/testh5copy.sh.in @@ -19,10 +19,7 @@ # Thursday, July 20, 2006 # -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi +srcdir=@srcdir@ # source dirs SRC_TOOLS="$srcdir/.." @@ -76,6 +73,9 @@ H5LS_BIN=`pwd`/../h5ls/$H5LS # The path of the h5ls tool binary CMP='cmp -s' DIFF='diff -c' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' nerrors=0 verbose=yes @@ -105,17 +105,26 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile." - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done } + # Print a "SKIP" message SKIP() { TESTING $H5COPY $@ diff --git a/tools/h5diff/CMakeLists.txt b/tools/h5diff/CMakeLists.txt index 3357b97..994a6f2 100644 --- a/tools/h5diff/CMakeLists.txt +++ b/tools/h5diff/CMakeLists.txt @@ -202,6 +202,7 @@ IF (BUILD_TESTING) ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_56.txt ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_57.txt ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_58.txt + ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_59.txt ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_500.txt ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_501.txt ${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_502.txt @@ -702,6 +703,8 @@ IF (BUILD_TESTING) h5diff_57.out.err h5diff_58.out h5diff_58.out.err + h5diff_59.out + h5diff_59.out.err h5diff_500.out h5diff_500.out.err h5diff_501.out @@ -960,6 +963,10 @@ ADD_H5_TEST (h5diff_57 0 -v ${FILE4} ${FILE4} dset7a dset7b) # 5.8 (region reference) ADD_H5_TEST (h5diff_58 1 -v ${FILE7} ${FILE8} refreg) +# test for both dset and attr with same type but with different size +# ( HDDFV-7942 ) +ADD_H5_TEST (h5diff_59 0 -v ${FILE4} ${FILE4} dset11a dset11b) + # ############################################################################## # # Error messages # ############################################################################## @@ -1429,7 +1436,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5diff ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5diff ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS @@ -1442,7 +1449,7 @@ INSTALL ( IF (H5_HAVE_PARALLEL) - INSTALL_PROGRAM_PDB (ph5diff ${HDF5_INSTALL_BIN_DIR} toolsapplications) + #INSTALL_PROGRAM_PDB (ph5diff ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5diff/Makefile.am b/tools/h5diff/Makefile.am index 0b8816f..190c083 100644 --- a/tools/h5diff/Makefile.am +++ b/tools/h5diff/Makefile.am @@ -27,7 +27,7 @@ INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib # is enabled. if BUILD_PARALLEL_CONDITIONAL H5PDIFF=ph5diff - TEST_SCRIPT_PARA=$(srcdir)/testph5diff.sh + TEST_SCRIPT_PARA=testph5diff.sh endif # Our main target, h5diff @@ -38,7 +38,7 @@ h5diff_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS) # Test programs and scripts TEST_PROG=h5diffgentest -TEST_SCRIPT=$(srcdir)/testh5diff.sh +TEST_SCRIPT=testh5diff.sh check_PROGRAMS=$(TEST_PROG) check_SCRIPTS=$(TEST_SCRIPT) $(TEST_SCRIPT_PARA) diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in index 25884b2..4676341 100644 --- a/tools/h5diff/Makefile.in +++ b/tools/h5diff/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,19 +68,21 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(srcdir)/testh5diff.sh.in $(srcdir)/testph5diff.sh.in \ + $(top_srcdir)/bin/depcomp $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am bin_PROGRAMS = h5diff$(EXEEXT) $(am__EXEEXT_1) check_PROGRAMS = $(am__EXEEXT_2) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +TESTS = $(am__EXEEXT_2) $(TEST_SCRIPT) subdir = tools/h5diff ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h -CONFIG_CLEAN_FILES = +CONFIG_CLEAN_FILES = testh5diff.sh testph5diff.sh CONFIG_CLEAN_VPATH_FILES = @BUILD_PARALLEL_CONDITIONAL_TRUE@am__EXEEXT_1 = ph5diff$(EXEEXT) am__installdirs = "$(DESTDIR)$(bindir)" @@ -74,9 +92,10 @@ am_h5diff_OBJECTS = h5diff_main.$(OBJEXT) h5diff_common.$(OBJEXT) h5diff_OBJECTS = $(am_h5diff_OBJECTS) h5diff_LDADD = $(LDADD) h5diff_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5diff_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(h5diff_LDFLAGS) $(LDFLAGS) -o $@ @@ -88,6 +107,18 @@ am_ph5diff_OBJECTS = ph5diff_main.$(OBJEXT) h5diff_common.$(OBJEXT) ph5diff_OBJECTS = $(am_ph5diff_OBJECTS) ph5diff_LDADD = $(LDADD) ph5diff_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -98,32 +129,35 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = $(h5diff_SOURCES) $(h5diffgentest_SOURCES) \ $(ph5diff_SOURCES) DIST_SOURCES = $(h5diff_SOURCES) $(h5diffgentest_SOURCES) \ $(ph5diff_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -141,12 +175,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -415,14 +446,14 @@ INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib # Always build and test h5diff but build and test ph5diff only if parallel # is enabled. @BUILD_PARALLEL_CONDITIONAL_TRUE@H5PDIFF = ph5diff -@BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_SCRIPT_PARA = $(srcdir)/testph5diff.sh +@BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_SCRIPT_PARA = testph5diff.sh # Add h5diff specific linker flags here h5diff_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS) # Test programs and scripts TEST_PROG = h5diffgentest -TEST_SCRIPT = $(srcdir)/testh5diff.sh +TEST_SCRIPT = testh5diff.sh check_SCRIPTS = $(TEST_SCRIPT) $(TEST_SCRIPT_PARA) # The parallel test script testph5diff.sh actually depends on testh5diff.sh. SCRIPT_DEPEND = h5diff$(EXEEXT) $(H5PDIFF) $(srcdir)/testh5diff.sh @@ -446,6 +477,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -475,6 +510,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -484,10 +520,17 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(am__aclocal_m4_deps): +testh5diff.sh: $(top_builddir)/config.status $(srcdir)/testh5diff.sh.in + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ +testph5diff.sh: $(top_builddir)/config.status $(srcdir)/testph5diff.sh.in + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -536,13 +579,13 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -h5diff$(EXEEXT): $(h5diff_OBJECTS) $(h5diff_DEPENDENCIES) +h5diff$(EXEEXT): $(h5diff_OBJECTS) $(h5diff_DEPENDENCIES) $(EXTRA_h5diff_DEPENDENCIES) @rm -f h5diff$(EXEEXT) $(AM_V_CCLD)$(h5diff_LINK) $(h5diff_OBJECTS) $(h5diff_LDADD) $(LIBS) -h5diffgentest$(EXEEXT): $(h5diffgentest_OBJECTS) $(h5diffgentest_DEPENDENCIES) +h5diffgentest$(EXEEXT): $(h5diffgentest_OBJECTS) $(h5diffgentest_DEPENDENCIES) $(EXTRA_h5diffgentest_DEPENDENCIES) @rm -f h5diffgentest$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5diffgentest_OBJECTS) $(h5diffgentest_LDADD) $(LIBS) -ph5diff$(EXEEXT): $(ph5diff_OBJECTS) $(ph5diff_DEPENDENCIES) +ph5diff$(EXEEXT): $(ph5diff_OBJECTS) $(ph5diff_DEPENDENCIES) $(EXTRA_ph5diff_DEPENDENCIES) @rm -f ph5diff$(EXEEXT) $(AM_V_CCLD)$(LINK) $(ph5diff_OBJECTS) $(ph5diff_LDADD) $(LIBS) @@ -560,26 +603,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -636,6 +676,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -688,10 +742,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -778,7 +837,7 @@ uninstall-am: uninstall-binPROGRAMS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool ctags distclean distclean-compile \ + clean-libtool cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-data install-data-am install-dvi \ @@ -807,7 +866,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -833,7 +892,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -857,7 +916,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -867,7 +926,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -957,7 +1016,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -987,7 +1046,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5diff/h5diffgentest.c b/tools/h5diff/h5diffgentest.c index c370f79..7c69154 100644 --- a/tools/h5diff/h5diffgentest.c +++ b/tools/h5diff/h5diffgentest.c @@ -759,6 +759,7 @@ int test_datatypes(const char *fname) { hid_t fid1; + hid_t dset; hsize_t dims[2]={3,2}; herr_t status; char buf1a[3][2] = {{1,1},{1,1},{1,1}}; @@ -790,6 +791,9 @@ int test_datatypes(const char *fname) unsigned int buf10a[3][2] = {{UIMAX,1},{1,1},{1,1}}; unsigned int buf10b[3][2] = {{UIMAX-1,1},{3,4},{5,6}}; + unsigned short buf11a[3][2] = {{204,205},{2,3},{1,1}}; + unsigned int buf11b[3][2] = {{204,205},{2,3},{1,1}}; + /*------------------------------------------------------------------------- * Create a file @@ -880,6 +884,19 @@ int test_datatypes(const char *fname) write_dset(fid1,2,dims,"dset10a",H5T_NATIVE_UINT,buf10a); write_dset(fid1,2,dims,"dset10b",H5T_NATIVE_UINT,buf10b); + /*------------------------------------------------------------------------- + * Same type class, different size + *------------------------------------------------------------------------- + */ + write_dset(fid1,2,dims,"dset11a",H5T_STD_U16LE,buf11a); + dset=H5Dopen2 (fid1, "dset11a", H5P_DEFAULT); + write_attr(dset,2,dims,"attr",H5T_STD_U16LE,buf11a); + H5Dclose (dset); + + write_dset(fid1,2,dims,"dset11b",H5T_STD_U32LE,buf11b); + dset=H5Dopen2 (fid1, "dset11b", H5P_DEFAULT); + write_attr(dset,2,dims,"attr",H5T_STD_U32LE,buf11b); + H5Dclose (dset); /*------------------------------------------------------------------------- * Close diff --git a/tools/h5diff/testfiles/h5diff_59.txt b/tools/h5diff/testfiles/h5diff_59.txt new file mode 100644 index 0000000..aeefa3a --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_59.txt @@ -0,0 +1,11 @@ +dataset: </dset11a> and </dset11b> +Warning: different storage datatype +</dset11a> has file datatype H5T_STD_U16LE +</dset11b> has file datatype H5T_STD_U32LE +Warning: different storage datatype +<attr> has file datatype H5T_STD_U16LE +<attr> has file datatype H5T_STD_U32LE +attribute: <attr of </dset11a>> and <attr of </dset11b>> +0 differences found +0 differences found +EXIT CODE: 0 diff --git a/tools/h5diff/testfiles/h5diff_dtypes.h5 b/tools/h5diff/testfiles/h5diff_dtypes.h5 Binary files differindex 7c3cd9d..ffa5264 100644 --- a/tools/h5diff/testfiles/h5diff_dtypes.h5 +++ b/tools/h5diff/testfiles/h5diff_dtypes.h5 diff --git a/tools/h5diff/testh5diff.sh b/tools/h5diff/testh5diff.sh.in index a208acf..3455287 100755..100644 --- a/tools/h5diff/testh5diff.sh +++ b/tools/h5diff/testh5diff.sh.in @@ -29,7 +29,7 @@ # Added test 400 - 425 (links with --follow-symlinks option) # Added test 450 - 459 (dangling links) - +srcdir=@srcdir@ TESTNAME=h5diff EXIT_SUCCESS=0 @@ -41,6 +41,9 @@ H5DIFF_BIN=`pwd`/$H5DIFF # The path of the tool binary CMP='cmp -s' DIFF='diff -c' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' nerrors=0 verbose=yes @@ -48,11 +51,6 @@ h5haveexitcode=yes # default is yes pmode= # default to run h5diff tests mydomainname=`domainname 2>/dev/null` -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - # source dirs SRC_TOOLS="$srcdir/.." SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles" @@ -231,6 +229,7 @@ $SRC_H5DIFF_TESTFILES/h5diff_55.txt $SRC_H5DIFF_TESTFILES/h5diff_56.txt $SRC_H5DIFF_TESTFILES/h5diff_57.txt $SRC_H5DIFF_TESTFILES/h5diff_58.txt +$SRC_H5DIFF_TESTFILES/h5diff_59.txt $SRC_H5DIFF_TESTFILES/h5diff_500.txt $SRC_H5DIFF_TESTFILES/h5diff_501.txt $SRC_H5DIFF_TESTFILES/h5diff_502.txt @@ -318,12 +317,20 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - $CP -f $tstfile $TESTDIR - if [ $? -ne 0 ]; then - echo "Error: FAILED to copy $tstfile ." + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." - # Comment out this to CREATE expected file - exit $EXIT_FAILURE + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done @@ -615,6 +622,10 @@ TOOLTEST h5diff_57.txt -v h5diff_dtypes.h5 h5diff_dtypes.h5 dset7a dset7b # 5.8 (region reference) TOOLTEST h5diff_58.txt -v h5diff_dset1.h5 h5diff_dset2.h5 refreg +# test for both dset and attr with same type but with different size +# ( HDDFV-7942 ) +TOOLTEST h5diff_59.txt -v h5diff_dtypes.h5 h5diff_dtypes.h5 dset11a dset11b + # ############################################################################## # # Error messages # ############################################################################## @@ -825,14 +836,7 @@ TOOLTEST h5diff_221.txt -c non_comparables1.h5 non_comparables2.h5 /g2 # entire file # All the comparables should display differences. -if test -n "$pmode"; then - # parallel mode: - # skip due to ph5diff hangs on koala (linux64-LE) and ember intermittently. - # (HDFFV-8003 - TBD) - SKIP -c non_comparables1.h5 non_comparables2.h5 -else - TOOLTEST h5diff_222.txt -c non_comparables1.h5 non_comparables2.h5 -fi +TOOLTEST h5diff_222.txt -c non_comparables1.h5 non_comparables2.h5 # non-comparable test for common objects (same name) with different object types # (HDFFV-7644) diff --git a/tools/h5diff/testph5diff.sh b/tools/h5diff/testph5diff.sh.in index c619ab5..ca212a1 100755..100644 --- a/tools/h5diff/testph5diff.sh +++ b/tools/h5diff/testph5diff.sh.in @@ -14,16 +14,13 @@ # access to either file, you may request a copy from help@hdfgroup.org. # -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi +srcdir=@srcdir@ TESTNAME=ph5diff EXIT_SUCCESS=0 EXIT_FAILURE=1 -TOOL=${srcdir}/testh5diff.sh +TOOL=testh5diff.sh nerrors=0 diff --git a/tools/h5dump/CMakeLists.txt b/tools/h5dump/CMakeLists.txt index 02327b4..0327949 100644 --- a/tools/h5dump/CMakeLists.txt +++ b/tools/h5dump/CMakeLists.txt @@ -781,16 +781,6 @@ IF (BUILD_TESTING) ENDIF (HDF5_ENABLE_USING_MEMCHECKER) ENDMACRO (ADD_XML_H5_TEST file) - # -------------------------------------------------------------------- - # Determine which filters are available - # -------------------------------------------------------------------- - SET (USE_FILTER_SZIP H5_HAVE_FILTER_SZIP) - SET (USE_FILTER_DEFLATE H5_HAVE_FILTER_DEFLATE) - SET (USE_FILTER_SHUFFLE H5_HAVE_FILTER_SHUFFLE) - SET (USE_FILTER_FLETCHER32 H5_HAVE_FILTER_FLETCHER32) - SET (USE_FILTER_NBIT H5_HAVE_FILTER_NBIT) - SET (USE_FILTER_SCALEOFFSET H5_HAVE_FILTER_SCALEOFFSET) - ############################################################################## ############################################################################## ### T H E T E S T S HDF5_ENABLE_USING_MEMCHECKER ### @@ -1280,53 +1270,25 @@ IF (BUILD_TESTING) # tests for filters # SZIP - SET (TESTTYPE "TEST") - IF (NOT USE_FILTER_SZIP) - SET (TESTTYPE "SKIP") - ENDIF (NOT USE_FILTER_SZIP) - ADD_SKIP_H5_TEST (tszip 0 ${TESTTYPE} --enable-error-stack -H -p -d szip tfilters.h5) + ADD_H5_TEST (tszip 0 --enable-error-stack -H -p -d szip tfilters.h5) # deflate - SET (TESTTYPE "TEST") - IF (NOT USE_FILTER_DEFLATE) - SET (TESTTYPE "SKIP") - ENDIF (NOT USE_FILTER_DEFLATE) - ADD_SKIP_H5_TEST (tdeflate 0 ${TESTTYPE} --enable-error-stack -H -p -d deflate tfilters.h5) + ADD_H5_TEST (tdeflate 0 --enable-error-stack -H -p -d deflate tfilters.h5) # shuffle - SET (TESTTYPE "TEST") - IF (NOT USE_FILTER_SHUFFLE) - SET (TESTTYPE "SKIP") - ENDIF (NOT USE_FILTER_SHUFFLE) - ADD_SKIP_H5_TEST (tshuffle 0 ${TESTTYPE} --enable-error-stack -H -p -d shuffle tfilters.h5) + ADD_H5_TEST (tshuffle 0 --enable-error-stack -H -p -d shuffle tfilters.h5) # fletcher32 - SET (TESTTYPE "TEST") - IF (NOT USE_FILTER_FLETCHER32) - SET (TESTTYPE "SKIP") - ENDIF (NOT USE_FILTER_FLETCHER32) - ADD_SKIP_H5_TEST (tfletcher32 0 ${TESTTYPE} --enable-error-stack -H -p -d fletcher32 tfilters.h5) + ADD_H5_TEST (tfletcher32 0 --enable-error-stack -H -p -d fletcher32 tfilters.h5) # nbit - SET (TESTTYPE "TEST") - IF (NOT USE_FILTER_NBIT) - SET (TESTTYPE "SKIP") - ENDIF (NOT USE_FILTER_NBIT) - ADD_SKIP_H5_TEST (tnbit 0 ${TESTTYPE} --enable-error-stack -H -p -d nbit tfilters.h5) + ADD_H5_TEST (tnbit 0 --enable-error-stack -H -p -d nbit tfilters.h5) # scaleoffset - SET (TESTTYPE "TEST") - IF (NOT USE_FILTER_SCALEOFFSET) - SET (TESTTYPE "SKIP") - ENDIF (NOT USE_FILTER_SCALEOFFSET) - ADD_SKIP_H5_TEST (tscaleoffset 0 ${TESTTYPE} --enable-error-stack -H -p -d scaleoffset tfilters.h5) + ADD_H5_TEST (tscaleoffset 0 --enable-error-stack -H -p -d scaleoffset tfilters.h5) # all - SET (TESTTYPE "TEST") - IF (NOT USE_FILTER_SZIP OR NOT USE_FILTER_SHUFFLE OR NOT USE_FILTER_FLETCHER32 OR NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_NBIT OR NOT USE_FILTER_SCALEOFFSET) - SET (TESTTYPE "SKIP") - ENDIF (NOT USE_FILTER_SZIP OR NOT USE_FILTER_SHUFFLE OR NOT USE_FILTER_FLETCHER32 OR NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_NBIT OR NOT USE_FILTER_SCALEOFFSET) - ADD_SKIP_H5_TEST (tallfilters 0 ${TESTTYPE} --enable-error-stack -H -p -d all tfilters.h5) + ADD_H5_TEST (tallfilters 0 --enable-error-stack -H -p -d all tfilters.h5) # user defined ADD_H5_TEST (tuserfilter 0 --enable-error-stack -H -p -d myfilter tfilters.h5) @@ -1938,7 +1900,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5dump ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5dump ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in index 0c45a72..6b4a6e6 100644 --- a/tools/h5dump/Makefile.in +++ b/tools/h5dump/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -53,14 +69,16 @@ build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ $(srcdir)/testh5dump.sh.in $(srcdir)/testh5dumppbits.sh.in \ - $(srcdir)/testh5dumpxml.sh.in $(top_srcdir)/config/commence.am \ + $(srcdir)/testh5dumpxml.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am check_PROGRAMS = $(am__EXEEXT_1) binread$(EXEEXT) bin_PROGRAMS = h5dump$(EXEEXT) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT) subdir = tools/h5dump ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -74,9 +92,10 @@ binread_SOURCES = binread.c binread_OBJECTS = binread.$(OBJEXT) binread_LDADD = $(LDADD) binread_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = am_h5dump_OBJECTS = h5dump.$(OBJEXT) h5dump_ddl.$(OBJEXT) \ h5dump_xml.$(OBJEXT) h5dump_OBJECTS = $(am_h5dump_OBJECTS) @@ -89,6 +108,18 @@ h5dumpgentest_SOURCES = h5dumpgentest.c h5dumpgentest_OBJECTS = h5dumpgentest.$(OBJEXT) h5dumpgentest_LDADD = $(LDADD) h5dumpgentest_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -99,30 +130,33 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = binread.c $(h5dump_SOURCES) h5dumpgentest.c DIST_SOURCES = binread.c $(h5dump_SOURCES) h5dumpgentest.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -140,12 +174,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -437,6 +468,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -466,6 +501,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -483,8 +519,11 @@ testh5dumpxml.sh: $(top_builddir)/config.status $(srcdir)/testh5dumpxml.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -533,13 +572,13 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -binread$(EXEEXT): $(binread_OBJECTS) $(binread_DEPENDENCIES) +binread$(EXEEXT): $(binread_OBJECTS) $(binread_DEPENDENCIES) $(EXTRA_binread_DEPENDENCIES) @rm -f binread$(EXEEXT) $(AM_V_CCLD)$(LINK) $(binread_OBJECTS) $(binread_LDADD) $(LIBS) -h5dump$(EXEEXT): $(h5dump_OBJECTS) $(h5dump_DEPENDENCIES) +h5dump$(EXEEXT): $(h5dump_OBJECTS) $(h5dump_DEPENDENCIES) $(EXTRA_h5dump_DEPENDENCIES) @rm -f h5dump$(EXEEXT) $(AM_V_CCLD)$(h5dump_LINK) $(h5dump_OBJECTS) $(h5dump_LDADD) $(LIBS) -h5dumpgentest$(EXEEXT): $(h5dumpgentest_OBJECTS) $(h5dumpgentest_DEPENDENCIES) +h5dumpgentest$(EXEEXT): $(h5dumpgentest_OBJECTS) $(h5dumpgentest_DEPENDENCIES) $(EXTRA_h5dumpgentest_DEPENDENCIES) @rm -f h5dumpgentest$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5dumpgentest_OBJECTS) $(h5dumpgentest_LDADD) $(LIBS) @@ -558,26 +597,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -634,6 +670,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -686,10 +736,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -777,7 +832,7 @@ uninstall-am: uninstall-binPROGRAMS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool ctags distclean distclean-compile \ + clean-libtool cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-data install-data-am install-dvi \ @@ -806,7 +861,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -832,7 +887,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -856,7 +911,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -866,7 +921,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -956,7 +1011,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -986,7 +1041,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c index 23fd1d9..2921fb9 100644 --- a/tools/h5dump/h5dump.c +++ b/tools/h5dump/h5dump.c @@ -233,23 +233,23 @@ usage(const char *prog) HDfflush(rawoutstream); HDfprintf(rawoutstream, "usage: %s [OPTIONS] files\n", prog); HDfprintf(rawoutstream, " OPTIONS\n"); - HDfprintf(rawoutstream, " -h, --help Print a usage message and exit\n"); - HDfprintf(rawoutstream, " -n, --contents Print a list of the file contents and exit\n"); + HDfprintf(rawoutstream, " -h, --help Print a usage message and exit\n"); + HDfprintf(rawoutstream, " -n, --contents Print a list of the file contents and exit\n"); HDfprintf(rawoutstream, " Optional value 1 also prints attributes.\n"); - HDfprintf(rawoutstream, " -B, --superblock Print the content of the super block\n"); - HDfprintf(rawoutstream, " -H, --header Print the header only; no data is displayed\n"); - HDfprintf(rawoutstream, " -A, --onlyattr Print the header and value of attributes\n"); - HDfprintf(rawoutstream, " -i, --object-ids Print the object ids\n"); - HDfprintf(rawoutstream, " -r, --string Print 1-byte integer datasets as ASCII\n"); - HDfprintf(rawoutstream, " -e, --escape Escape non printing characters\n"); - HDfprintf(rawoutstream, " -V, --version Print version number and exit\n"); + HDfprintf(rawoutstream, " -B, --superblock Print the content of the super block\n"); + HDfprintf(rawoutstream, " -H, --header Print the header only; no data is displayed\n"); + HDfprintf(rawoutstream, " -A, --onlyattr Print the header and value of attributes\n"); + HDfprintf(rawoutstream, " -i, --object-ids Print the object ids\n"); + HDfprintf(rawoutstream, " -r, --string Print 1-byte integer datasets as ASCII\n"); + HDfprintf(rawoutstream, " -e, --escape Escape non printing characters\n"); + HDfprintf(rawoutstream, " -V, --version Print version number and exit\n"); HDfprintf(rawoutstream, " -a P, --attribute=P Print the specified attribute\n"); HDfprintf(rawoutstream, " If an attribute name contains a slash (/), escape the\n"); HDfprintf(rawoutstream, " slash with a preceding backslash (\\).\n"); HDfprintf(rawoutstream, " (See example section below.)\n"); HDfprintf(rawoutstream, " -d P, --dataset=P Print the specified dataset\n"); - HDfprintf(rawoutstream, " -y, --noindex Do not print array indices with the data\n"); - HDfprintf(rawoutstream, " -p, --properties Print dataset filters, storage layout and fill value\n"); + HDfprintf(rawoutstream, " -y, --noindex Do not print array indices with the data\n"); + HDfprintf(rawoutstream, " -p, --properties Print dataset filters, storage layout and fill value\n"); HDfprintf(rawoutstream, " -f D, --filedriver=D Specify which driver to open the file with\n"); HDfprintf(rawoutstream, " -g P, --group=P Print the specified group and all members\n"); HDfprintf(rawoutstream, " -l P, --soft-link=P Print the value(s) of the specified soft link\n"); @@ -270,17 +270,17 @@ usage(const char *prog) " the data value and length is the number of bits of\n" " the mask.\n" ); - HDfprintf(rawoutstream, " -R, --region Print dataset pointed by region references\n"); - HDfprintf(rawoutstream, " -x, --xml Output in XML using Schema\n"); - HDfprintf(rawoutstream, " -u, --use-dtd Output in XML using DTD\n"); + HDfprintf(rawoutstream, " -R, --region Print dataset pointed by region references\n"); + HDfprintf(rawoutstream, " -x, --xml Output in XML using Schema\n"); + HDfprintf(rawoutstream, " -u, --use-dtd Output in XML using DTD\n"); HDfprintf(rawoutstream, " -D U, --xml-dtd=U Use the DTD or schema at U\n"); - HDfprintf(rawoutstream, " -X S, --xml-ns=S (XML Schema) Use qualified names n the XML\n"); + HDfprintf(rawoutstream, " -X S, --xml-ns=S (XML Schema) Use qualified names n the XML\n"); HDfprintf(rawoutstream, " \":\": no namespace, default: \"hdf5:\"\n"); HDfprintf(rawoutstream, " E.g., to dump a file called `-f', use h5dump -- -f\n"); HDfprintf(rawoutstream, " --enable-error-stack Prints messages from the HDF5 error stack as they\n"); HDfprintf(rawoutstream, " occur.\n"); HDfprintf(rawoutstream, " --no-compact-subset Disable compact form of subsetting and allow the use\n"); - HDfprintf(rawoutstream, " of \"[\" in datset names.\n"); + HDfprintf(rawoutstream, " of \"[\" in dataset names.\n"); HDfprintf(rawoutstream, "\n"); HDfprintf(rawoutstream, " Subsetting is available by using the following options with a dataset\n"); HDfprintf(rawoutstream, " attribute. Subsetting is done by selecting a hyperslab from the data.\n"); @@ -294,7 +294,8 @@ usage(const char *prog) HDfprintf(rawoutstream, " -c COUNT, --count=COUNT Number of blocks to include in selection\n"); HDfprintf(rawoutstream, " -k BLOCK, --block=BLOCK Size of block in hyperslab\n"); HDfprintf(rawoutstream, " START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the\n"); - HDfprintf(rawoutstream, " number of dimensions in the dataspace being queried\n"); + HDfprintf(rawoutstream, " number of dimensions in the dataspace being queried\n"); + HDfprintf(rawoutstream, " (Alternate compact form of subsetting is described in the Reference Manual)\n"); HDfprintf(rawoutstream, "\n"); HDfprintf(rawoutstream, " D - is the file driver to use in opening the file. Acceptable values\n"); HDfprintf(rawoutstream, " are \"sec2\", \"family\", \"split\", \"multi\", \"direct\", and \"stream\". Without\n"); diff --git a/tools/h5dump/testh5dump.sh.in b/tools/h5dump/testh5dump.sh.in index fa71558..2373f6f 100644 --- a/tools/h5dump/testh5dump.sh.in +++ b/tools/h5dump/testh5dump.sh.in @@ -15,13 +15,7 @@ # # Tests for the h5dump tool -# Determine which filters are available -USE_FILTER_SZIP="@USE_FILTER_SZIP@" -USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" -USE_FILTER_SHUFFLE="@USE_FILTER_SHUFFLE@" -USE_FILTER_FLETCHER32="@USE_FILTER_FLETCHER32@" -USE_FILTER_NBIT="@USE_FILTER_NBIT@" -USE_FILTER_SCALEOFFSET="@USE_FILTER_SCALEOFFSET@" +srcdir=@srcdir@ TESTNAME=h5dump EXIT_SUCCESS=0 @@ -40,14 +34,13 @@ H5IMPORT_BIN=`pwd`/$H5IMPORT # The path of the h5import tool binary CMP='cmp -s' DIFF='diff -c' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi # source dirs SRC_TOOLS="$srcdir/../" @@ -351,18 +344,25 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done } - # Print a line-line message left justified in a field of 70 characters # beginning with the word "Testing". # @@ -871,54 +871,19 @@ TOOLTEST texceedsubblock.ddl --enable-error-stack -d 1d -k 1,3 taindices.h5 # tests for filters # SZIP -option="--enable-error-stack -H -p -d szip tfilters.h5" -if test $USE_FILTER_SZIP != "yes"; then - SKIP $option -else -TOOLTEST tszip.ddl $option -fi +TOOLTEST tszip.ddl --enable-error-stack -H -p -d szip tfilters.h5 # deflate -option="--enable-error-stack -H -p -d deflate tfilters.h5" -if test $USE_FILTER_DEFLATE != "yes"; then - SKIP $option -else - TOOLTEST tdeflate.ddl $option -fi +TOOLTEST tdeflate.ddl --enable-error-stack -H -p -d deflate tfilters.h5 # shuffle -option="--enable-error-stack -H -p -d shuffle tfilters.h5" -if test $USE_FILTER_SHUFFLE != "yes"; then - SKIP $option -else - TOOLTEST tshuffle.ddl $option -fi +TOOLTEST tshuffle.ddl --enable-error-stack -H -p -d shuffle tfilters.h5 # fletcher32 -option="--enable-error-stack -H -p -d fletcher32 tfilters.h5" -if test $USE_FILTER_FLETCHER32 != "yes"; then - SKIP $option -else - TOOLTEST tfletcher32.ddl $option -fi +TOOLTEST tfletcher32.ddl --enable-error-stack -H -p -d fletcher32 tfilters.h5 # nbit -option="--enable-error-stack -H -p -d nbit tfilters.h5" -if test $USE_FILTER_NBIT != "yes"; then - SKIP $option -else - TOOLTEST tnbit.ddl $option -fi +TOOLTEST tnbit.ddl --enable-error-stack -H -p -d nbit tfilters.h5 # scaleoffset -option="--enable-error-stack -H -p -d scaleoffset tfilters.h5" -if test $USE_FILTER_SCALEOFFSET != "yes"; then - SKIP $option -else - TOOLTEST tscaleoffset.ddl $option -fi +TOOLTEST tscaleoffset.ddl --enable-error-stack -H -p -d scaleoffset tfilters.h5 # all -option="--enable-error-stack -H -p -d all tfilters.h5" -if test $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SHUFFLE != "yes" -o $USE_FILTER_NBIT != "yes" -o $USE_FILTER_SCALEOFFSET != "yes"; then - SKIP $option -else - TOOLTEST tallfilters.ddl $option -fi +TOOLTEST tallfilters.ddl --enable-error-stack -H -p -d all tfilters.h5 # user defined TOOLTEST tuserfilter.ddl --enable-error-stack -H -p -d myfilter tfilters.h5 diff --git a/tools/h5dump/testh5dumppbits.sh.in b/tools/h5dump/testh5dumppbits.sh.in index 991fe7a..a390766 100644 --- a/tools/h5dump/testh5dumppbits.sh.in +++ b/tools/h5dump/testh5dumppbits.sh.in @@ -15,6 +15,8 @@ # # Tests for the h5dump tool with packed bits type files +srcdir=@srcdir@ + # Determine which filters are available USE_FILTER_SZIP="@USE_FILTER_SZIP@" USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" @@ -40,14 +42,13 @@ H5IMPORT_BIN=`pwd`/$H5IMPORT # The path of the h5import tool binary CMP='cmp -s' DIFF='diff -c' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi # source dirs SRC_TOOLS="$srcdir/../" @@ -77,6 +78,8 @@ test -d $TESTDIR || mkdir $TESTDIR # -------------------------------------------------------------------- LIST_HDF5_TEST_FILES=" $SRC_H5DUMP_TESTFILES/packedbits.h5 +$SRC_H5DUMP_TESTFILES/tarray1.h5 +$SRC_H5DUMP_TESTFILES/tcompound.h5 " LIST_OTHER_TEST_FILES=" @@ -165,18 +168,25 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done } - # Print a line-line message left justified in a field of 70 characters # beginning with the word "Testing". # diff --git a/tools/h5dump/testh5dumpxml.sh.in b/tools/h5dump/testh5dumpxml.sh.in index 4e6081b..374f504 100644 --- a/tools/h5dump/testh5dumpxml.sh.in +++ b/tools/h5dump/testh5dumpxml.sh.in @@ -15,6 +15,8 @@ # # Tests for the h5dump tool +srcdir=@srcdir@ + TESTNAME=h5dumpxml EXIT_SUCCESS=0 EXIT_FAILURE=1 @@ -27,14 +29,13 @@ DUMPER_BIN=`pwd`/$DUMPER # The path of the tool binary CMP='cmp -s' DIFF='diff -c' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi # source dirs SRC_TOOLS="$srcdir/../" @@ -195,12 +196,20 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done diff --git a/tools/h5import/CMakeLists.txt b/tools/h5import/CMakeLists.txt index a655bf2..bc47244 100644 --- a/tools/h5import/CMakeLists.txt +++ b/tools/h5import/CMakeLists.txt @@ -273,7 +273,9 @@ IF (BUILD_TESTING) # -------------------------------------------------------------------- # Determine if filter is available for h5diff # -------------------------------------------------------------------- - SET (USE_FILTER_DEFLATE H5_HAVE_FILTER_DEFLATE) + IF (H5_HAVE_FILTER_DEFLATE) + SET (USE_FILTER_DEFLATE "true") + ENDIF (H5_HAVE_FILTER_DEFLATE) ############################################################################## ############################################################################## @@ -379,7 +381,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5import ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5import ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5import/Makefile.am b/tools/h5import/Makefile.am index 49f4f71..167dbc9 100644 --- a/tools/h5import/Makefile.am +++ b/tools/h5import/Makefile.am @@ -25,7 +25,7 @@ INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib # Test programs and scripts TEST_PROG=h5importtest -TEST_SCRIPT=$(srcdir)/h5importtestutil.sh +TEST_SCRIPT=h5importtestutil.sh check_PROGRAMS=$(TEST_PROG) check_SCRIPT=h5importtestutil.sh diff --git a/tools/h5import/Makefile.in b/tools/h5import/Makefile.in index b2a90ff..16e8901 100644 --- a/tools/h5import/Makefile.in +++ b/tools/h5import/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,19 +68,21 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(srcdir)/h5importtestutil.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am check_PROGRAMS = $(am__EXEEXT_1) bin_PROGRAMS = h5import$(EXEEXT) -TESTS = $(check_PROGRAMS) +TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT) subdir = tools/h5import ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h -CONFIG_CLEAN_FILES = +CONFIG_CLEAN_FILES = h5importtestutil.sh CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" am__EXEEXT_1 = h5importtest$(EXEEXT) @@ -73,9 +91,10 @@ h5import_SOURCES = h5import.c h5import_OBJECTS = h5import.$(OBJEXT) h5import_LDADD = $(LDADD) h5import_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5import_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(h5import_LDFLAGS) $(LDFLAGS) -o $@ @@ -83,6 +102,18 @@ h5importtest_SOURCES = h5importtest.c h5importtest_OBJECTS = h5importtest.$(OBJEXT) h5importtest_LDADD = $(LDADD) h5importtest_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -93,30 +124,33 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = h5import.c h5importtest.c DIST_SOURCES = h5import.c h5importtest.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -134,12 +168,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -403,7 +434,7 @@ INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib # Test programs and scripts TEST_PROG = h5importtest -TEST_SCRIPT = $(srcdir)/h5importtestutil.sh +TEST_SCRIPT = h5importtestutil.sh check_SCRIPT = h5importtestutil.sh SCRIPT_DEPEND = h5import$(EXEEXT) @@ -424,6 +455,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -453,6 +488,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -462,10 +498,15 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(am__aclocal_m4_deps): +h5importtestutil.sh: $(top_builddir)/config.status $(srcdir)/h5importtestutil.sh.in + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -514,10 +555,10 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -h5import$(EXEEXT): $(h5import_OBJECTS) $(h5import_DEPENDENCIES) +h5import$(EXEEXT): $(h5import_OBJECTS) $(h5import_DEPENDENCIES) $(EXTRA_h5import_DEPENDENCIES) @rm -f h5import$(EXEEXT) $(AM_V_CCLD)$(h5import_LINK) $(h5import_OBJECTS) $(h5import_LDADD) $(LIBS) -h5importtest$(EXEEXT): $(h5importtest_OBJECTS) $(h5importtest_DEPENDENCIES) +h5importtest$(EXEEXT): $(h5importtest_OBJECTS) $(h5importtest_DEPENDENCIES) $(EXTRA_h5importtest_DEPENDENCIES) @rm -f h5importtest$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5importtest_OBJECTS) $(h5importtest_LDADD) $(LIBS) @@ -533,26 +574,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -609,6 +647,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -661,10 +713,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -751,7 +808,7 @@ uninstall-am: uninstall-binPROGRAMS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool ctags distclean distclean-compile \ + clean-libtool cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-data install-data-am install-dvi \ @@ -780,7 +837,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -806,7 +863,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -830,7 +887,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -840,7 +897,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -930,7 +987,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -960,7 +1017,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5import/h5importtestutil.sh b/tools/h5import/h5importtestutil.sh.in index 45a360a..ba0743b 100755..100644 --- a/tools/h5import/h5importtestutil.sh +++ b/tools/h5import/h5importtestutil.sh.in @@ -16,6 +16,8 @@ # HDF Utilities Test script # Usage: h5importtestutil.sh [machine-type] +srcdir=@srcdir@ + # Determine which filters are available USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" @@ -24,15 +26,13 @@ EXIT_SUCCESS=0 EXIT_FAILURE=1 CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' # initialize errors variable nerrors=0 -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - # source dirs SRC_TOOLS="$srcdir/.." SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles" @@ -128,12 +128,20 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done diff --git a/tools/h5jam/CMakeLists.txt b/tools/h5jam/CMakeLists.txt index d0bf30f..b44e734 100644 --- a/tools/h5jam/CMakeLists.txt +++ b/tools/h5jam/CMakeLists.txt @@ -535,7 +535,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5jam ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5jam ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in index 31190ec..ff8b089 100644 --- a/tools/h5jam/Makefile.in +++ b/tools/h5jam/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,14 +68,16 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/testh5jam.sh.in $(top_srcdir)/config/commence.am \ + $(srcdir)/testh5jam.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am bin_PROGRAMS = h5jam$(EXEEXT) h5unjam$(EXEEXT) check_PROGRAMS = tellub$(EXEEXT) h5jamgentest$(EXEEXT) getub$(EXEEXT) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +TESTS = $(TEST_SCRIPT) subdir = tools/h5jam ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -72,9 +90,10 @@ getub_SOURCES = getub.c getub_OBJECTS = getub.$(OBJEXT) getub_LDADD = $(LDADD) getub_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5jam_SOURCES = h5jam.c h5jam_OBJECTS = h5jam.$(OBJEXT) h5jam_LDADD = $(LDADD) @@ -97,6 +116,18 @@ tellub_SOURCES = tellub.c tellub_OBJECTS = tellub.$(OBJEXT) tellub_LDADD = $(LDADD) tellub_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -107,30 +138,33 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = getub.c h5jam.c h5jamgentest.c h5unjam.c tellub.c DIST_SOURCES = getub.c h5jam.c h5jamgentest.c h5unjam.c tellub.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -148,12 +182,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -440,6 +471,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -469,6 +504,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -482,8 +518,11 @@ testh5jam.sh: $(top_builddir)/config.status $(srcdir)/testh5jam.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -532,19 +571,19 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -getub$(EXEEXT): $(getub_OBJECTS) $(getub_DEPENDENCIES) +getub$(EXEEXT): $(getub_OBJECTS) $(getub_DEPENDENCIES) $(EXTRA_getub_DEPENDENCIES) @rm -f getub$(EXEEXT) $(AM_V_CCLD)$(LINK) $(getub_OBJECTS) $(getub_LDADD) $(LIBS) -h5jam$(EXEEXT): $(h5jam_OBJECTS) $(h5jam_DEPENDENCIES) +h5jam$(EXEEXT): $(h5jam_OBJECTS) $(h5jam_DEPENDENCIES) $(EXTRA_h5jam_DEPENDENCIES) @rm -f h5jam$(EXEEXT) $(AM_V_CCLD)$(h5jam_LINK) $(h5jam_OBJECTS) $(h5jam_LDADD) $(LIBS) -h5jamgentest$(EXEEXT): $(h5jamgentest_OBJECTS) $(h5jamgentest_DEPENDENCIES) +h5jamgentest$(EXEEXT): $(h5jamgentest_OBJECTS) $(h5jamgentest_DEPENDENCIES) $(EXTRA_h5jamgentest_DEPENDENCIES) @rm -f h5jamgentest$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5jamgentest_OBJECTS) $(h5jamgentest_LDADD) $(LIBS) -h5unjam$(EXEEXT): $(h5unjam_OBJECTS) $(h5unjam_DEPENDENCIES) +h5unjam$(EXEEXT): $(h5unjam_OBJECTS) $(h5unjam_DEPENDENCIES) $(EXTRA_h5unjam_DEPENDENCIES) @rm -f h5unjam$(EXEEXT) $(AM_V_CCLD)$(h5unjam_LINK) $(h5unjam_OBJECTS) $(h5unjam_LDADD) $(LIBS) -tellub$(EXEEXT): $(tellub_OBJECTS) $(tellub_DEPENDENCIES) +tellub$(EXEEXT): $(tellub_OBJECTS) $(tellub_DEPENDENCIES) $(EXTRA_tellub_DEPENDENCIES) @rm -f tellub$(EXEEXT) $(AM_V_CCLD)$(LINK) $(tellub_OBJECTS) $(tellub_LDADD) $(LIBS) @@ -563,26 +602,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -639,6 +675,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -691,10 +741,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -782,7 +837,7 @@ uninstall-am: uninstall-binPROGRAMS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool ctags distclean distclean-compile \ + clean-libtool cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-data install-data-am install-dvi \ @@ -811,7 +866,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -837,7 +892,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -861,7 +916,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -871,7 +926,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -961,7 +1016,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -991,7 +1046,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5jam/testh5jam.sh.in b/tools/h5jam/testh5jam.sh.in index f359926..b2c6bec 100644 --- a/tools/h5jam/testh5jam.sh.in +++ b/tools/h5jam/testh5jam.sh.in @@ -15,6 +15,8 @@ # # Tests for the h5jam/h5unjam tools +srcdir=@srcdir@ + # Determine which filters are available USE_FILTER_SZIP="@USE_FILTER_SZIP@" USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" @@ -36,15 +38,13 @@ CMP='cmp -s' DIFF='diff -c' AWK='awk' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - # source dirs SRC_TOOLS="$srcdir/.." SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles" @@ -103,12 +103,20 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done diff --git a/tools/h5ls/CMakeLists.txt b/tools/h5ls/CMakeLists.txt index 81a6787..e2b3285 100644 --- a/tools/h5ls/CMakeLists.txt +++ b/tools/h5ls/CMakeLists.txt @@ -434,7 +434,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5ls ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5ls ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5ls/Makefile.in b/tools/h5ls/Makefile.in index 1a33335..7aa4329 100644 --- a/tools/h5ls/Makefile.in +++ b/tools/h5ls/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,13 +68,15 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/testh5ls.sh.in $(top_srcdir)/config/commence.am \ + $(srcdir)/testh5ls.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am bin_PROGRAMS = h5ls$(EXEEXT) -TESTS = $(check_SCRIPTS) +TESTS = $(TEST_SCRIPT) subdir = tools/h5ls ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -71,12 +89,25 @@ h5ls_SOURCES = h5ls.c h5ls_OBJECTS = h5ls.$(OBJEXT) h5ls_LDADD = $(LDADD) h5ls_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5ls_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(h5ls_LDFLAGS) $(LDFLAGS) -o $@ +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -87,30 +118,33 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = h5ls.c DIST_SOURCES = h5ls.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -128,12 +162,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -417,6 +448,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -446,6 +481,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -459,8 +495,11 @@ testh5ls.sh: $(top_builddir)/config.status $(srcdir)/testh5ls.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -500,7 +539,7 @@ clean-binPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -h5ls$(EXEEXT): $(h5ls_OBJECTS) $(h5ls_DEPENDENCIES) +h5ls$(EXEEXT): $(h5ls_OBJECTS) $(h5ls_DEPENDENCIES) $(EXTRA_h5ls_DEPENDENCIES) @rm -f h5ls$(EXEEXT) $(AM_V_CCLD)$(h5ls_LINK) $(h5ls_OBJECTS) $(h5ls_LDADD) $(LIBS) @@ -515,26 +554,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -591,6 +627,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -643,10 +693,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -731,8 +786,8 @@ uninstall-am: uninstall-binPROGRAMS .MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ - clean clean-binPROGRAMS clean-generic clean-libtool ctags \ - distclean distclean-compile distclean-generic \ + clean clean-binPROGRAMS clean-generic clean-libtool cscopelist \ + ctags distclean distclean-compile distclean-generic \ distclean-libtool distclean-tags distdir dvi dvi-am html \ html-am info info-am install install-am install-binPROGRAMS \ install-data install-data-am install-dvi install-dvi-am \ @@ -761,7 +816,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -787,7 +842,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -811,7 +866,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -821,7 +876,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -911,7 +966,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -941,7 +996,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5ls/testh5ls.sh.in b/tools/h5ls/testh5ls.sh.in index 110c651..0904f96 100644 --- a/tools/h5ls/testh5ls.sh.in +++ b/tools/h5ls/testh5ls.sh.in @@ -15,6 +15,8 @@ # # Tests for the h5ls tool +srcdir=@srcdir@ + TESTNAME=h5ls EXIT_SUCCESS=0 EXIT_FAILURE=1 @@ -26,19 +28,20 @@ CMP='cmp -s' DIFF='diff -c' CP='cp' NLINES=20 # Max. lines of output to display if test fails +DIRNAME='dirname' +LS='ls' +AWK='awk' WORDS_BIGENDIAN="@WORDS_BIGENDIAN@" nerrors=0 verbose=yes h5haveexitcode=yes # default is yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi + # source dirs SRC_TOOLS="$srcdir/.." SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles" + # testfiles source dirs for tools SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES" SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES" @@ -167,12 +170,20 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done diff --git a/tools/h5repack/CMakeLists.txt b/tools/h5repack/CMakeLists.txt index 936559e..3ee1cba 100644 --- a/tools/h5repack/CMakeLists.txt +++ b/tools/h5repack/CMakeLists.txt @@ -899,7 +899,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5repack ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5repack ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in index 0d749d3..389339f 100644 --- a/tools/h5repack/Makefile.in +++ b/tools/h5repack/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,15 +68,17 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/h5repack.sh.in $(top_srcdir)/config/commence.am \ + $(srcdir)/h5repack.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am noinst_PROGRAMS = testh5repack_detect_szip$(EXEEXT) check_PROGRAMS = $(am__EXEEXT_1) bin_PROGRAMS = h5repack$(EXEEXT) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT) subdir = tools/h5repack ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -78,9 +96,10 @@ am_h5repack_OBJECTS = $(am__objects_1) h5repack_main.$(OBJEXT) h5repack_OBJECTS = $(am_h5repack_OBJECTS) h5repack_LDADD = $(LDADD) h5repack_DEPENDENCIES = $(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5repack_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(h5repack_LDFLAGS) $(LDFLAGS) -o $@ @@ -95,6 +114,18 @@ testh5repack_detect_szip_OBJECTS = \ testh5repack_detect_szip_LDADD = $(LDADD) testh5repack_detect_szip_DEPENDENCIES = $(LIBH5TOOLS) $(LIBH5TEST) \ $(LIBHDF5) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -105,32 +136,35 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = $(h5repack_SOURCES) $(h5repacktst_SOURCES) \ $(testh5repack_detect_szip_SOURCES) DIST_SOURCES = $(h5repack_SOURCES) $(h5repacktst_SOURCES) \ $(testh5repack_detect_szip_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -148,12 +182,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -451,6 +482,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -480,6 +515,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -493,8 +529,11 @@ h5repack.sh: $(top_builddir)/config.status $(srcdir)/h5repack.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -552,13 +591,13 @@ clean-noinstPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -h5repack$(EXEEXT): $(h5repack_OBJECTS) $(h5repack_DEPENDENCIES) +h5repack$(EXEEXT): $(h5repack_OBJECTS) $(h5repack_DEPENDENCIES) $(EXTRA_h5repack_DEPENDENCIES) @rm -f h5repack$(EXEEXT) $(AM_V_CCLD)$(h5repack_LINK) $(h5repack_OBJECTS) $(h5repack_LDADD) $(LIBS) -h5repacktst$(EXEEXT): $(h5repacktst_OBJECTS) $(h5repacktst_DEPENDENCIES) +h5repacktst$(EXEEXT): $(h5repacktst_OBJECTS) $(h5repacktst_DEPENDENCIES) $(EXTRA_h5repacktst_DEPENDENCIES) @rm -f h5repacktst$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5repacktst_OBJECTS) $(h5repacktst_LDADD) $(LIBS) -testh5repack_detect_szip$(EXEEXT): $(testh5repack_detect_szip_OBJECTS) $(testh5repack_detect_szip_DEPENDENCIES) +testh5repack_detect_szip$(EXEEXT): $(testh5repack_detect_szip_OBJECTS) $(testh5repack_detect_szip_DEPENDENCIES) $(EXTRA_testh5repack_detect_szip_DEPENDENCIES) @rm -f testh5repack_detect_szip$(EXEEXT) $(AM_V_CCLD)$(LINK) $(testh5repack_detect_szip_OBJECTS) $(testh5repack_detect_szip_LDADD) $(LIBS) @@ -582,26 +621,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -658,6 +694,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -710,10 +760,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -801,7 +856,7 @@ uninstall-am: uninstall-binPROGRAMS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool clean-noinstPROGRAMS ctags distclean \ + clean-libtool clean-noinstPROGRAMS cscopelist ctags distclean \ distclean-compile distclean-generic distclean-libtool \ distclean-tags distdir dvi dvi-am html html-am info info-am \ install install-am install-binPROGRAMS install-data \ @@ -834,7 +889,7 @@ h5repack.sh.chkexe_: h5repacktst.chkexe_ # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -860,7 +915,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -884,7 +939,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -894,7 +949,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -984,7 +1039,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1014,7 +1069,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5repack/h5repack.sh.in b/tools/h5repack/h5repack.sh.in index e05b03f..2614dd6 100644 --- a/tools/h5repack/h5repack.sh.in +++ b/tools/h5repack/h5repack.sh.in @@ -20,6 +20,8 @@ # Added $FILEN variables for file names # +srcdir=@srcdir@ + USE_FILTER_SZIP="@USE_FILTER_SZIP@" USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" USE_FILTER_SHUFFLE="@USE_FILTER_SHUFFLE@" @@ -42,6 +44,9 @@ H5DUMP_BIN=`pwd`/$H5DUMP # The path of the h5dump tool binary GREP='grep' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' H5DETECTSZIP=testh5repack_detect_szip H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP @@ -50,15 +55,10 @@ H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -# -if test -z "$srcdir"; then - srcdir=. -fi - # source dirs SRC_TOOLS="$srcdir/.." SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles" + # testfiles source dirs for tools SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES" SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES" @@ -137,12 +137,20 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done diff --git a/tools/h5repack/h5repack_copy.c b/tools/h5repack/h5repack_copy.c index 957d3c8..cf55d7f 100644 --- a/tools/h5repack/h5repack_copy.c +++ b/tools/h5repack/h5repack_copy.c @@ -1541,7 +1541,7 @@ static void print_dataset_info(hid_t dcpl_id, printf(FORMAT_OBJ,"dset",objname ); else { - char str[255], temp[20]; + char str[255], temp[28]; HDstrcpy(str,"dset "); HDstrcat(str,strfilter); sprintf(temp," (%.3f:1)",ratio); diff --git a/tools/h5repack/h5repack_opttable.c b/tools/h5repack/h5repack_opttable.c index 4ec7fcf..00e4bea 100644 --- a/tools/h5repack/h5repack_opttable.c +++ b/tools/h5repack/h5repack_opttable.c @@ -388,7 +388,7 @@ pack_info_t* options_get_object( const char *path, pack_opttbl_t *table ) { unsigned int i; - const char tbl_path[MAX_NC_NAME]; + const char tbl_path[MAX_NC_NAME+1]; /* +1 for start with "/" case */ for ( i = 0; i < table->nelems; i++) diff --git a/tools/h5stat/CMakeLists.txt b/tools/h5stat/CMakeLists.txt index e8d75e3..3518cfd 100644 --- a/tools/h5stat/CMakeLists.txt +++ b/tools/h5stat/CMakeLists.txt @@ -206,7 +206,7 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5stat ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5stat ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/h5stat/Makefile.in b/tools/h5stat/Makefile.in index 403446c..389e460 100644 --- a/tools/h5stat/Makefile.in +++ b/tools/h5stat/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -34,6 +33,23 @@ VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -53,14 +69,16 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/testh5stat.sh.in $(top_srcdir)/config/commence.am \ + $(srcdir)/testh5stat.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ + $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am check_PROGRAMS = $(am__EXEEXT_1) bin_PROGRAMS = h5stat$(EXEEXT) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT) subdir = tools/h5stat ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -74,9 +92,10 @@ h5stat_SOURCES = h5stat.c h5stat_OBJECTS = h5stat.$(OBJEXT) h5stat_LDADD = $(LDADD) h5stat_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5stat_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(h5stat_LDFLAGS) $(LDFLAGS) -o $@ @@ -105,7 +124,25 @@ am__nobase_list = $(am__nobase_strip_setup); \ am__base_list = \ sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \ sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g' +am__uninstall_files_from_dir = { \ + test -z "$$files" \ + || { test ! -d "$$dir" && test ! -f "$$dir" && test ! -r "$$dir"; } \ + || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ + $(am__cd) "$$dir" && rm -f $$files; }; \ + } SCRIPTS = $(bin_SCRIPTS) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -116,30 +153,33 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = h5stat.c h5stat_gentest.c DIST_SOURCES = h5stat.c h5stat_gentest.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -157,12 +197,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -459,6 +496,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -488,6 +529,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -501,8 +543,11 @@ testh5stat.sh: $(top_builddir)/config.status $(srcdir)/testh5stat.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -551,16 +596,19 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -h5stat$(EXEEXT): $(h5stat_OBJECTS) $(h5stat_DEPENDENCIES) +h5stat$(EXEEXT): $(h5stat_OBJECTS) $(h5stat_DEPENDENCIES) $(EXTRA_h5stat_DEPENDENCIES) @rm -f h5stat$(EXEEXT) $(AM_V_CCLD)$(h5stat_LINK) $(h5stat_OBJECTS) $(h5stat_LDADD) $(LIBS) -h5stat_gentest$(EXEEXT): $(h5stat_gentest_OBJECTS) $(h5stat_gentest_DEPENDENCIES) +h5stat_gentest$(EXEEXT): $(h5stat_gentest_OBJECTS) $(h5stat_gentest_DEPENDENCIES) $(EXTRA_h5stat_gentest_DEPENDENCIES) @rm -f h5stat_gentest$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5stat_gentest_OBJECTS) $(h5stat_gentest_LDADD) $(LIBS) install-binSCRIPTS: $(bin_SCRIPTS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_SCRIPTS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do \ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ if test -f "$$d$$p"; then echo "$$d$$p"; echo "$$p"; else :; fi; \ @@ -588,9 +636,7 @@ uninstall-binSCRIPTS: @list='$(bin_SCRIPTS)'; test -n "$(bindir)" || exit 0; \ files=`for p in $$list; do echo "$$p"; done | \ sed -e 's,.*/,,;$(transform)'`; \ - test -n "$$list" || exit 0; \ - echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ - cd "$(DESTDIR)$(bindir)" && rm -f $$files + dir='$(DESTDIR)$(bindir)'; $(am__uninstall_files_from_dir) mostlyclean-compile: -rm -f *.$(OBJEXT) @@ -604,26 +650,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -680,6 +723,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -732,10 +789,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -824,7 +886,7 @@ uninstall-am: uninstall-binPROGRAMS uninstall-binSCRIPTS .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool ctags distclean distclean-compile \ + clean-libtool cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-binSCRIPTS install-data \ @@ -854,7 +916,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -880,7 +942,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -904,7 +966,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -914,7 +976,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1004,7 +1066,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1034,7 +1096,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/h5stat/testh5stat.sh.in b/tools/h5stat/testh5stat.sh.in index c594a97..74071d0 100644 --- a/tools/h5stat/testh5stat.sh.in +++ b/tools/h5stat/testh5stat.sh.in @@ -15,6 +15,8 @@ # # Tests for the h5dump tool +srcdir=@srcdir@ + # Determine which filters are available USE_FILTER_SZIP="@USE_FILTER_SZIP@" USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@" @@ -33,15 +35,13 @@ STAT_BIN=`pwd`/$STAT # The path of the tool binary CMP='cmp -s' DIFF='diff -c' CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - # source dirs SRC_TOOLS="$srcdir/.." SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles" @@ -106,12 +106,20 @@ COPY_TESTFILES_TO_TESTDIR() echo $tstfile | tr -d ' ' | grep '^#' > /dev/null RET=$? if [ $RET -eq 1 ]; then - if [ -a $tstfile ]; then - $CP -f $tstfile $TESTDIR - else - echo "Error: FAILED to copy $tstfile" - echo " $tstfile doesn't exist!" - exit $EXIT_FAILURE + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi fi fi done diff --git a/tools/lib/CMakeLists.txt b/tools/lib/CMakeLists.txt index 6d48d5f..21420ce 100644 --- a/tools/lib/CMakeLists.txt +++ b/tools/lib/CMakeLists.txt @@ -40,6 +40,7 @@ H5_SET_LIB_OPTIONS ( HDF5_TOOLS_LIB_NAME_RELEASE HDF5_TOOLS_LIB_NAME_DEBUG ) +#SET_TARGET_PROPERTIES (hdf5_tools PROPERTIES COMPILE_DEFINITIONS H5DIFF_DEBUG) SET_TARGET_PROPERTIES (hdf5_tools PROPERTIES FOLDER libraries/tools) ############################################################################## diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in index beeb42f..6a76e1d 100644 --- a/tools/lib/Makefile.in +++ b/tools/lib/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,6 +32,23 @@ # VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -52,13 +68,14 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/bin/depcomp $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am check_PROGRAMS = $(am__EXEEXT_1) -TESTS = $(check_PROGRAMS) +TESTS = $(am__EXEEXT_1) subdir = tools/lib ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs @@ -72,10 +89,23 @@ am_libh5tools_la_OBJECTS = h5tools.lo h5tools_dump.lo h5tools_str.lo \ h5diff_dset.lo h5diff_util.lo h5trav.lo h5tools_filters.lo \ h5tools_ref.lo h5tools_type.lo libh5tools_la_OBJECTS = $(am_libh5tools_la_OBJECTS) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = am__EXEEXT_1 = +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -86,30 +116,33 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = $(libh5tools_la_SOURCES) DIST_SOURCES = $(libh5tools_la_SOURCES) +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -127,12 +160,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -419,6 +449,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -448,6 +482,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -460,13 +495,15 @@ $(am__aclocal_m4_deps): clean-noinstLTLIBRARIES: -test -z "$(noinst_LTLIBRARIES)" || rm -f $(noinst_LTLIBRARIES) - @list='$(noinst_LTLIBRARIES)'; for p in $$list; do \ - dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \ - test "$$dir" != "$$p" || dir=.; \ - echo "rm -f \"$${dir}/so_locations\""; \ - rm -f "$${dir}/so_locations"; \ - done -libh5tools.la: $(libh5tools_la_OBJECTS) $(libh5tools_la_DEPENDENCIES) + @list='$(noinst_LTLIBRARIES)'; \ + locs=`for p in $$list; do echo $$p; done | \ + sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ + sort -u`; \ + test -z "$$locs" || { \ + echo rm -f $${locs}; \ + rm -f $${locs}; \ + } +libh5tools.la: $(libh5tools_la_OBJECTS) $(libh5tools_la_DEPENDENCIES) $(EXTRA_libh5tools_la_DEPENDENCIES) $(AM_V_CCLD)$(LINK) $(libh5tools_la_OBJECTS) $(libh5tools_la_LIBADD) $(LIBS) clean-checkPROGRAMS: @@ -501,26 +538,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -577,6 +611,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -626,10 +674,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -716,17 +769,18 @@ uninstall-am: .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-checkPROGRAMS clean-generic clean-libtool \ - clean-noinstLTLIBRARIES ctags distclean distclean-compile \ - distclean-generic distclean-libtool distclean-tags distdir dvi \ - dvi-am html html-am info info-am install install-am \ - install-data install-data-am install-dvi install-dvi-am \ - install-exec install-exec-am install-html install-html-am \ - install-info install-info-am install-man install-pdf \ - install-pdf-am install-ps install-ps-am install-strip \ - installcheck installcheck-am installdirs maintainer-clean \ - maintainer-clean-generic mostlyclean mostlyclean-compile \ - mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ - pdf-am ps ps-am tags uninstall uninstall-am + clean-noinstLTLIBRARIES cscopelist ctags distclean \ + distclean-compile distclean-generic distclean-libtool \ + distclean-tags distdir dvi dvi-am html html-am info info-am \ + install install-am install-data install-data-am install-dvi \ + install-dvi-am install-exec install-exec-am install-html \ + install-html-am install-info install-info-am install-man \ + install-pdf install-pdf-am install-ps install-ps-am \ + install-strip installcheck installcheck-am installdirs \ + maintainer-clean maintainer-clean-generic mostlyclean \ + mostlyclean-compile mostlyclean-generic mostlyclean-libtool \ + mostlyclean-local pdf pdf-am ps ps-am tags uninstall \ + uninstall-am # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -744,7 +798,7 @@ help: # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -770,7 +824,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -794,7 +848,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -804,7 +858,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -894,7 +948,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -924,7 +978,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/lib/h5diff.c b/tools/lib/h5diff.c index bcd63f1..f2eb3ab 100644 --- a/tools/lib/h5diff.c +++ b/tools/lib/h5diff.c @@ -21,23 +21,6 @@ #include "h5diff.h" #include "ph5diff.h" -/* - * Debug printf macros. The prefix allows output filtering by test scripts. - */ -#ifdef H5DIFF_DEBUG -#define h5diffdebug(x) HDfprintf(stderr, "h5diff debug: " x) -#define h5diffdebug2(x1, x2) HDfprintf(stderr, "h5diff debug: " x1, x2) -#define h5diffdebug3(x1, x2, x3) HDfprintf(stderr, "h5diff debug: " x1, x2, x3) -#define h5diffdebug4(x1, x2, x3, x4) HDfprintf(stderr, "h5diff debug: " x1, x2, x3, x4) -#define h5diffdebug5(x1, x2, x3, x4, x5) HDfprintf(stderr, "h5diff debug: " x1, x2, x3, x4, x5) -#else -#define h5diffdebug(x) -#define h5diffdebug2(x1, x2) -#define h5diffdebug3(x1, x2, x3) -#define h5diffdebug4(x1, x2, x3, x4) -#define h5diffdebug5(x1, x2, x3, x4, x5) -#endif - /*------------------------------------------------------------------------- * Function: print_objname @@ -369,6 +352,7 @@ static void build_match_list (const char *objname1, trav_info_t *info1, const ch trav_table_t *table; size_t idx; + h5difftrace("build_match_list start\n"); /* init */ trav_table_init( &table ); @@ -378,6 +362,7 @@ static void build_match_list (const char *objname1, trav_info_t *info1, const ch * All the objects belong to given groups are the cadidates. * So prepare to compare paths without the group names. */ + /* if obj1 is not root */ if (HDstrcmp (objname1,"/") != 0) path1_offset = HDstrlen(objname1); @@ -390,7 +375,6 @@ static void build_match_list (const char *objname1, trav_info_t *info1, const ch */ while(curr1 < info1->nused && curr2 < info2->nused) { - path1_lp = (info1->paths[curr1].path) + path1_offset; path2_lp = (info2->paths[curr2].path) + path2_offset; type1_l = info1->paths[curr1].type; @@ -399,7 +383,8 @@ static void build_match_list (const char *objname1, trav_info_t *info1, const ch /* criteria is string compare */ cmp = HDstrcmp(path1_lp, path2_lp); - if(cmp == 0) { + if(cmp == 0) + { if(!is_exclude_path(path1_lp, type1_l, options)) { infile[0] = 1; @@ -470,29 +455,9 @@ static void build_match_list (const char *objname1, trav_info_t *info1, const ch } /* end while */ free_exclude_path_list (options); - /*------------------------------------------------------ - * print the list - */ - if(options->m_verbose) - { - parallel_print("\n"); - /* if given objects is group under root */ - if (HDstrcmp (objname1,"/") || HDstrcmp (objname2,"/")) - parallel_print("group1 group2\n"); - else - parallel_print("file1 file2\n"); - parallel_print("---------------------------------------\n"); - for(i = 0; i < table->nobjs; i++) - { - char c1, c2; - c1 = (table->objs[i].flags[0]) ? 'x' : ' '; - c2 = (table->objs[i].flags[1]) ? 'x' : ' '; - parallel_print("%5c %6c %-15s\n", c1, c2, table->objs[i].name); - } /* end for */ - parallel_print ("\n"); - } /* end if */ *table_out = table; + h5difftrace("build_match_list finish\n"); } @@ -653,6 +618,7 @@ hsize_t h5diff(const char *fname1, int l_ret2 = -1; const char * obj1fullname = NULL; const char * obj2fullname = NULL; + int both_objs_grp = 0; /* init to group type */ h5trav_type_t obj1type = H5TRAV_TYPE_GROUP; h5trav_type_t obj2type = H5TRAV_TYPE_GROUP; @@ -675,6 +641,7 @@ hsize_t h5diff(const char *fname1, /* list for common objects */ trav_table_t *match_list = NULL; + h5difftrace("h5diff start\n"); /* init filenames */ HDmemset(filenames, 0, MAX_FILENAME * 2); /* init link info struct */ @@ -723,6 +690,7 @@ hsize_t h5diff(const char *fname1, trav_info_init(fname1, file1_id, &info1_obj); trav_info_init(fname2, file2_id, &info2_obj); + h5difftrace("trav_info_init initialized\n"); /* if any object is specified */ if (objname1) { @@ -751,6 +719,7 @@ hsize_t h5diff(const char *fname1, /*---------------------------------------------------------- * check if obj1 is root, group, single object or symlink */ + h5difftrace("h5diff check if obj1 is root, group, single object or symlink\n"); if(!HDstrcmp((char *)obj1fullname, "/")) { obj1type = H5TRAV_TYPE_GROUP; @@ -778,6 +747,7 @@ hsize_t h5diff(const char *fname1, */ if(src_linfo1.type == H5L_TYPE_HARD) { + int idx = 0; /* optional data pass */ info1_obj->opts = (diff_opt_t*)options; @@ -789,6 +759,9 @@ hsize_t h5diff(const char *fname1, } obj1type = oinfo1.type; trav_info_add(info1_obj, obj1fullname, obj1type); + idx = info1_obj->nused - 1; + info1_obj->paths[idx].objno = oinfo1.addr; + info1_obj->paths[idx].fileno = oinfo1.fileno; } else if (src_linfo1.type == H5L_TYPE_SOFT) { @@ -805,6 +778,7 @@ hsize_t h5diff(const char *fname1, /*---------------------------------------------------------- * check if obj2 is root, group, single object or symlink */ + h5difftrace("h5diff check if obj2 is root, group, single object or symlink\n"); if(!HDstrcmp(obj2fullname, "/")) { obj2type = H5TRAV_TYPE_GROUP; @@ -832,6 +806,7 @@ hsize_t h5diff(const char *fname1, */ if(src_linfo2.type == H5L_TYPE_HARD) { + int idx = 0; /* optional data pass */ info2_obj->opts = (diff_opt_t*)options; @@ -843,6 +818,9 @@ hsize_t h5diff(const char *fname1, } obj2type = oinfo2.type; trav_info_add(info2_obj, obj2fullname, obj2type); + idx = info2_obj->nused - 1; + info2_obj->paths[idx].objno = oinfo2.addr; + info2_obj->paths[idx].fileno = oinfo2.fileno; } else if (src_linfo2.type == H5L_TYPE_SOFT) { @@ -859,11 +837,14 @@ hsize_t h5diff(const char *fname1, /* if no object specified */ else { + h5difftrace("h5diff no object specified\n"); /* set root group */ obj1fullname = (char*)HDcalloc(2, sizeof(char)); HDstrcat((char *)obj1fullname, "/"); + obj1type = H5TRAV_TYPE_GROUP; obj2fullname = (char*)HDcalloc(2, sizeof(char)); HDstrcat((char *)obj2fullname, "/"); + obj2type = H5TRAV_TYPE_GROUP; } @@ -883,9 +864,11 @@ hsize_t h5diff(const char *fname1, /*------------------------------- * check symbolic link (object1) */ + h5difftrace("h5diff check symbolic link (object1)\n"); /* dangling link */ if (l_ret1 == 0) { + h5difftrace("h5diff ... dangling link\n"); if (options->no_dangle_links) { /* treat dangling link is error */ @@ -913,15 +896,27 @@ hsize_t h5diff(const char *fname1, goto out; } else if(l_ret1 != 2) /* symbolic link */ + { obj1type = trg_linfo1.trg_type; + h5difftrace("h5diff ... ... trg_linfo1.trg_type == H5L_TYPE_HARD\n"); + if (info1_lp != NULL) { + int idx = info1_lp->nused - 1; + h5difftrace("h5diff ... ... ... info1_obj not null\n"); + info1_lp->paths[idx].type = trg_linfo1.trg_type; + info1_lp->paths[idx].objno = trg_linfo1.objno; + info1_lp->paths[idx].fileno = trg_linfo1.fileno; + } + h5difftrace("h5diff check symbolic link (object1) finished\n"); + } /*------------------------------- * check symbolic link (object2) */ - + h5difftrace("h5diff check symbolic link (object2)\n"); /* dangling link */ if (l_ret2 == 0) { + h5difftrace("h5diff ... dangling link\n"); if (options->no_dangle_links) { /* treat dangling link is error */ @@ -949,11 +944,21 @@ hsize_t h5diff(const char *fname1, goto out; } else if(l_ret2 != 2) /* symbolic link */ + { obj2type = trg_linfo2.trg_type; + if (info2_lp != NULL) { + int idx = info2_lp->nused - 1; + h5difftrace("h5diff ... ... ... info2_obj not null\n"); + info2_lp->paths[idx].type = trg_linfo2.trg_type; + info2_lp->paths[idx].objno = trg_linfo2.objno; + info2_lp->paths[idx].fileno = trg_linfo2.fileno; + } + h5difftrace("h5diff check symbolic link (object1) finished\n"); + } } /* end of if follow symlinks */ /* - * If verbose options is not used, don't need to traverse thorugh the list + * If verbose options is not used, don't need to traverse through the list * of objects in the group to display objects information, * So use h5tools_is_obj_same() to improve performance by skipping * comparing details of same objects. @@ -961,26 +966,26 @@ hsize_t h5diff(const char *fname1, if(!(options->m_verbose || options->m_report)) { + h5difftrace("h5diff NOT (options->m_verbose || options->m_report)\n"); /* if no danglink links */ if ( l_ret1 > 0 && l_ret2 > 0 ) - if (h5tools_is_obj_same(file1_id,obj1fullname,file2_id,obj2fullname)!=0) + if (h5tools_is_obj_same(file1_id, obj1fullname, file2_id, obj2fullname)!=0) goto out; } - - /* if both obj1 and obj2 are group */ - if (obj1type == H5TRAV_TYPE_GROUP && obj2type == H5TRAV_TYPE_GROUP) + both_objs_grp = (obj1type == H5TRAV_TYPE_GROUP && obj2type == H5TRAV_TYPE_GROUP); + if (both_objs_grp) { - - /* - * traverse group1 + h5difftrace("h5diff both_objs_grp TRUE\n"); + /* + * traverse group1 */ trav_info_init(fname1, file1_id, &info1_grp); /* optional data pass */ info1_grp->opts = (diff_opt_t*)options; - if(h5trav_visit(file1_id,obj1fullname,TRUE,TRUE, - trav_grp_objs,trav_grp_symlinks, info1_grp) < 0) + if(h5trav_visit(file1_id, obj1fullname, TRUE, TRUE, + trav_grp_objs, trav_grp_symlinks, info1_grp) < 0) { parallel_print("Error: Could not get file contents\n"); options->err_stat = 1; @@ -988,59 +993,71 @@ hsize_t h5diff(const char *fname1, } info1_lp = info1_grp; - /* - * traverse group2 + /* + * traverse group2 */ trav_info_init(fname2, file2_id, &info2_grp); /* optional data pass */ info2_grp->opts = (diff_opt_t*)options; - if(h5trav_visit(file2_id,obj2fullname,TRUE,TRUE, - trav_grp_objs,trav_grp_symlinks, info2_grp) < 0) + if(h5trav_visit(file2_id, obj2fullname, TRUE, TRUE, + trav_grp_objs, trav_grp_symlinks, info2_grp) < 0) { parallel_print("Error: Could not get file contents\n"); options->err_stat = 1; goto out; } /* end if */ info2_lp = info2_grp; - + } #ifdef H5_HAVE_PARALLEL - if(g_Parallel) + if(g_Parallel) + { + if((HDstrlen(fname1) > MAX_FILENAME) || (HDstrlen(fname2) > MAX_FILENAME)) { - if((HDstrlen(fname1) > MAX_FILENAME) || - (HDstrlen(fname2) > MAX_FILENAME)) - { - HDfprintf(stderr, "The parallel diff only supports path names up to %d characters\n", MAX_FILENAME); - MPI_Abort(MPI_COMM_WORLD, 0); - } /* end if */ + HDfprintf(stderr, "The parallel diff only supports path names up to %d characters\n", MAX_FILENAME); + MPI_Abort(MPI_COMM_WORLD, 0); + } /* end if */ - HDstrcpy(filenames[0], fname1); - HDstrcpy(filenames[1], fname2); + HDstrcpy(filenames[0], fname1); + HDstrcpy(filenames[1], fname2); - /* Alert the worker tasks that there's going to be work. */ - for(i = 1; i < g_nTasks; i++) - MPI_Send(filenames, (MAX_FILENAME * 2), MPI_CHAR, i, MPI_TAG_PARALLEL, MPI_COMM_WORLD); - } /* end if */ -#endif - build_match_list (obj1fullname, info1_lp, obj2fullname, info2_lp, - &match_list, options); - nfound = diff_match(file1_id, obj1fullname, info1_lp, - file2_id, obj2fullname, info2_lp, - match_list, options); - } - else - { -#ifdef H5_HAVE_PARALLEL - if(g_Parallel) - /* Only single object diff, parallel workers won't be needed */ - phdiff_dismiss_workers(); + /* Alert the worker tasks that there's going to be work. */ + for(i = 1; i < g_nTasks; i++) + MPI_Send(filenames, (MAX_FILENAME * 2), MPI_CHAR, i, MPI_TAG_PARALLEL, MPI_COMM_WORLD); + } /* end if */ #endif - nfound = diff_compare(file1_id, fname1, obj1fullname, info1_lp, - file2_id, fname2, obj2fullname, info2_lp, - options); + /* process the objects */ + build_match_list (obj1fullname, info1_lp, obj2fullname, info2_lp, + &match_list, options); + if (both_objs_grp) + { + /*------------------------------------------------------ + * print the list + */ + if(options->m_verbose) + { + parallel_print("\n"); + /* if given objects is group under root */ + if (HDstrcmp (obj1fullname,"/") || HDstrcmp (obj2fullname,"/")) + parallel_print("group1 group2\n"); + else + parallel_print("file1 file2\n"); + parallel_print("---------------------------------------\n"); + for(i = 0; i < match_list->nobjs; i++) + { + char c1, c2; + c1 = (match_list->objs[i].flags[0]) ? 'x' : ' '; + c2 = (match_list->objs[i].flags[1]) ? 'x' : ' '; + parallel_print("%5c %6c %-15s\n", c1, c2, match_list->objs[i].name); + } /* end for */ + parallel_print ("\n"); + } /* end if */ } + nfound = diff_match(file1_id, obj1fullname, info1_lp, + file2_id, obj2fullname, info2_lp, + match_list, options); out: #ifdef H5_HAVE_PARALLEL @@ -1077,6 +1094,7 @@ out: H5Fclose(file1_id); H5Fclose(file2_id); } H5E_END_TRY; + h5difftrace("h5diff finish\n"); return nfound; } @@ -1125,6 +1143,7 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, size_t idx2 = 0; + h5difftrace("diff_match start\n"); /* * if not root, prepare object name to be pre-appended to group path to * make full path @@ -1142,7 +1161,7 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, *------------------------------------------------------------------------- */ - /* not valid compare nused when --exclude-path option is used */ + /* not valid compare used when --exclude-path option is used */ if (!options->exclude_path) { /* number of different objects */ @@ -1222,7 +1241,7 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, { int workerFound = 0; - h5diffdebug("beginning of big else block\n"); + h5difftrace("Beginning of big else block\n"); /* We're in parallel mode */ /* Since the data type of diff value is hsize_t which can * be arbitary large such that there is no MPI type that @@ -1247,7 +1266,6 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, args.argdata.type[1] = info2->paths[idx2].type; args.argdata.is_same_trgobj = table->objs[i].is_same_trgobj; - h5diffdebug2("busyTasks=%d\n", busyTasks); /* if there are any outstanding print requests, let's handle one. */ if(busyTasks > 0) { @@ -1319,7 +1337,6 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, } /* end if */ } /* end for */ - h5diffdebug2("workerfound is %d \n", workerFound); if(!workerFound) { /* if they were all busy, we've got to wait for one free up @@ -1395,7 +1412,7 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, HDfree (obj2_fullpath); } /* end if */ } /* end for */ - h5diffdebug("done with for loop\n"); + h5difftrace("done with for loop\n"); #ifdef H5_HAVE_PARALLEL if(g_Parallel) @@ -1411,14 +1428,6 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, options->not_cmp = options->not_cmp | nFoundbyWorker.not_cmp; busyTasks--; } /* end if */ - else if(Status.MPI_TAG == MPI_TAG_TOK_RETURN) - { - MPI_Recv(&nFoundbyWorker, sizeof(nFoundbyWorker), MPI_BYTE, Status.MPI_SOURCE, MPI_TAG_DONE, MPI_COMM_WORLD, &Status); - nfound += nFoundbyWorker.nfound; - options->not_cmp = options->not_cmp | nFoundbyWorker.not_cmp; - busyTasks--; - havePrintToken = 1; - } /* end else-if */ else if(Status.MPI_TAG == MPI_TAG_TOK_REQUEST) { MPI_Recv(NULL, 0, MPI_BYTE, Status.MPI_SOURCE, MPI_TAG_TOK_REQUEST, MPI_COMM_WORLD, &Status); @@ -1490,7 +1499,7 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, /* Print any final data waiting in our queue */ print_incoming_data(); } /* end if */ - h5diffdebug("done with if block\n"); + h5difftrace("done with if block\n"); HDfree(workerTasks); } @@ -1499,130 +1508,7 @@ hsize_t diff_match(hid_t file1_id, const char *grp1, trav_info_t *info1, /* free table */ if (table) trav_table_free(table); - - return nfound; -} - - -/*------------------------------------------------------------------------- - * Function: diff_compare - * - * Purpose: get objects from list, and check for the same type - * - * Return: Number of differences found - * - * Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu - * Date: May 9, 2003 - * - * Programmer: Jonathan Kim - * - add following links feature (Feb 11,2010) - *------------------------------------------------------------------------- - */ - -hsize_t diff_compare(hid_t file1_id, - const char *file1_name, - const char *obj1_name, - trav_info_t *info1, - hid_t file2_id, - const char *file2_name, - const char *obj2_name, - trav_info_t *info2, - diff_opt_t *options) -{ - int f1 = 0; - int f2 = 0; - hsize_t nfound = 0; - ssize_t i,j; - int l_ret; - int is_dangle_link1 = 0; - int is_dangle_link2 = 0; - const char *obj1name = obj1_name; - const char *obj2name = obj2_name; - diff_args_t argdata; - - /* local variables for diff() */ - h5trav_type_t obj1type, obj2type; - - /* to get link info */ - h5tool_link_info_t linkinfo1; - h5tool_link_info_t linkinfo2; - - /* init link info struct */ - HDmemset(&linkinfo1, 0, sizeof(h5tool_link_info_t)); - HDmemset(&linkinfo2, 0, sizeof(h5tool_link_info_t)); - - i = h5trav_getindex (info1, obj1name); - j = h5trav_getindex (info2, obj2name); - - if (i == -1) - { - parallel_print ("Object <%s> could not be found in <%s>\n", obj1name, - file1_name); - f1 = 1; - } - if (j == -1) - { - parallel_print ("Object <%s> could not be found in <%s>\n", obj2name, - file2_name); - f2 = 1; - } - if (f1 || f2) - { - options->err_stat = 1; - return 0; - } - /* use the name with "/" first, as obtained by iterator function */ - obj1name = info1->paths[i].path; - obj2name = info2->paths[j].path; - - obj1type = info1->paths[i].type; - obj2type = info2->paths[j].type; - - /* Set argdata to pass other args into diff() */ - argdata.type[0] = obj1type; - argdata.type[1] = obj2type; - argdata.is_same_trgobj = 0; - - nfound = diff(file1_id, obj1name, - file2_id, obj2name, - options, &argdata); - -out: - /*------------------------------- - * handle dangling link(s) */ - /* both obj1 and obj2 are dangling links */ - if(is_dangle_link1 && is_dangle_link2) - { - if(print_objname(options, nfound)) - { - do_print_objname("dangling link", obj1name, obj2name, options); - print_found(nfound); - } - } - /* obj1 is dangling link */ - else if (is_dangle_link1) - { - if(options->m_verbose) - parallel_print("obj1 <%s> is a dangling link.\n", obj1name); - nfound++; - if(print_objname(options, nfound)) - print_found(nfound); - } - /* obj2 is dangling link */ - else if (is_dangle_link2) - { - if(options->m_verbose) - parallel_print("obj2 <%s> is a dangling link.\n", obj2name); - nfound++; - if(print_objname(options, nfound)) - print_found(nfound); - } - - /* free link info buffer */ - if (linkinfo1.trg_path) - HDfree((char *)linkinfo1.trg_path); - if (linkinfo2.trg_path) - HDfree((char *)linkinfo2.trg_path); + h5difftrace("diff_match finish\n"); return nfound; } @@ -1672,11 +1558,12 @@ hsize_t diff(hid_t file1_id, hsize_t nfound = 0; h5trav_type_t object_type; - /* to get link info */ h5tool_link_info_t linkinfo1; h5tool_link_info_t linkinfo2; + h5difftrace("diff start\n"); + /*init link info struct */ HDmemset(&linkinfo1,0,sizeof(h5tool_link_info_t)); HDmemset(&linkinfo2,0,sizeof(h5tool_link_info_t)); @@ -1776,6 +1663,7 @@ hsize_t diff(hid_t file1_id, */ if (argdata->is_same_trgobj) { + h5difftrace("argdata->is_same_trgobj\n"); is_hard_link = (object_type == H5TRAV_TYPE_DATASET || object_type == H5TRAV_TYPE_NAMED_DATATYPE || object_type == H5TRAV_TYPE_GROUP); @@ -2061,6 +1949,7 @@ out2: H5Tclose(grp2_id); /* enable error reporting */ } H5E_END_TRY; + h5difftrace("diff finish\n"); return nfound; } diff --git a/tools/lib/h5diff.h b/tools/lib/h5diff.h index 6985b68..2530805 100644 --- a/tools/lib/h5diff.h +++ b/tools/lib/h5diff.h @@ -19,6 +19,23 @@ #include "hdf5.h" #include "h5trav.h" +/* + * Debug printf macros. The prefix allows output filtering by test scripts. + */ +#ifdef H5DIFF_DEBUG +#define h5difftrace(x) HDfprintf(stderr, "h5diff debug: " x) +#define h5diffdebug2(x1, x2) HDfprintf(stderr, "h5diff debug: " x1, x2) +#define h5diffdebug3(x1, x2, x3) HDfprintf(stderr, "h5diff debug: " x1, x2, x3) +#define h5diffdebug4(x1, x2, x3, x4) HDfprintf(stderr, "h5diff debug: " x1, x2, x3, x4) +#define h5diffdebug5(x1, x2, x3, x4, x5) HDfprintf(stderr, "h5diff debug: " x1, x2, x3, x4, x5) +#else +#define h5difftrace(x) +#define h5diffdebug2(x1, x2) +#define h5diffdebug3(x1, x2, x3) +#define h5diffdebug4(x1, x2, x3, x4) +#define h5diffdebug5(x1, x2, x3, x4, x5) +#endif + #define MAX_FILENAME 1024 /*------------------------------------------------------------------------- @@ -118,15 +135,6 @@ hsize_t diff_datasetid( hid_t dset1_id, const char *obj2_name, diff_opt_t *options); -hsize_t diff_compare( hid_t file1_id, - const char *file1_name, - const char *obj1_name, - trav_info_t *info1, - hid_t file2_id, - const char *file2_name, - const char *obj2_name, - trav_info_t *info2, - diff_opt_t *options ); hsize_t diff_match( hid_t file1_id, const char *grp1, trav_info_t *info1, hid_t file2_id, const char *grp2, trav_info_t *info2, @@ -172,6 +180,7 @@ hsize_t diff_attr(hid_t loc1_id, *------------------------------------------------------------------------- */ +/* in h5diff_util.c */ void print_found(hsize_t nfound); void print_type(hid_t type); const char* diff_basename(const char *name); @@ -179,6 +188,10 @@ const char* get_type(h5trav_type_t type); const char* get_class(H5T_class_t tclass); const char* get_sign(H5T_sign_t sign); void print_dimensions (int rank, hsize_t *dims); +herr_t match_up_memsize (hid_t f_tid1_id, hid_t f_tid2_id, + hid_t *m_tid1, hid_t *m_tid2, + size_t *m_size1, size_t *m_size2); +/* in h5diff.c */ int print_objname(diff_opt_t *options, hsize_t nfound); void do_print_objname (const char *OBJ, const char *path1, const char *path2, diff_opt_t * opts); void do_print_attrname (const char *attr, const char *path1, const char *path2); diff --git a/tools/lib/h5diff_array.c b/tools/lib/h5diff_array.c index 604a825..1e7f88b 100644 --- a/tools/lib/h5diff_array.c +++ b/tools/lib/h5diff_array.c @@ -230,6 +230,7 @@ hsize_t diff_array( void *_mem1, mcomp_t members; H5T_class_t type_class; + h5difftrace("diff_array start\n"); /* get the size. */ size = H5Tget_size( m_type ); type_class = H5Tget_class(m_type); @@ -344,6 +345,7 @@ hsize_t diff_array( void *_mem1, } /* i */ close_member_types(&members); } /* switch */ + h5difftrace("diff_array finish\n"); return nfound; } @@ -423,6 +425,7 @@ hsize_t diff_datum(void *_mem1, double per; int both_zero; + h5difftrace("diff_datum start\n"); type_size = H5Tget_size( m_type ); type_class = H5Tget_class(m_type); @@ -2537,6 +2540,7 @@ hsize_t diff_datum(void *_mem1, break; /* H5T_FLOAT class */ } /* switch */ + h5difftrace("diff_datum finish\n"); return nfound; } @@ -2822,6 +2826,7 @@ hsize_t character_compare(unsigned char *mem1, HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char)); HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char)); + h5difftrace("character_compare start\n"); if (temp1_uchar != temp2_uchar) { @@ -2836,6 +2841,7 @@ hsize_t character_compare(unsigned char *mem1, } nfound++; } + h5difftrace("character_compare finish\n"); return nfound; } @@ -2872,6 +2878,7 @@ hsize_t character_compare_opt(unsigned char *mem1, HDmemcpy(&temp1_uchar, mem1, sizeof(unsigned char)); HDmemcpy(&temp2_uchar, mem2, sizeof(unsigned char)); + h5difftrace("character_compare_opt start\n"); /* -d and !-p */ if (options->d && !options->p) @@ -2927,6 +2934,7 @@ hsize_t character_compare_opt(unsigned char *mem1, } nfound++; } + h5difftrace("character_compare_opt finish\n"); return nfound; @@ -2965,6 +2973,7 @@ hsize_t diff_float(unsigned char *mem1, int isnan1=0; int isnan2=0; + h5difftrace("diff_float start\n"); /*------------------------------------------------------------------------- * -d and !-p @@ -3202,6 +3211,7 @@ hsize_t diff_float(unsigned char *mem1, } + h5difftrace("diff_float finish\n"); return nfound; } @@ -3239,6 +3249,7 @@ hsize_t diff_double(unsigned char *mem1, int isnan1=0; int isnan2=0; + h5difftrace("diff_double start\n"); /*------------------------------------------------------------------------- * -d and !-p *------------------------------------------------------------------------- @@ -3479,6 +3490,7 @@ hsize_t diff_double(unsigned char *mem1, } + h5difftrace("diff_double finish\n"); return nfound; } @@ -3521,6 +3533,7 @@ hsize_t diff_ldouble(unsigned char *mem1, int isnan1=0; int isnan2=0; + h5difftrace("diff_ldouble start\n"); /*------------------------------------------------------------------------- * -d and !-p @@ -3762,6 +3775,7 @@ hsize_t diff_ldouble(unsigned char *mem1, } + h5difftrace("diff_ldouble finish\n"); return nfound; } @@ -3802,6 +3816,7 @@ hsize_t diff_schar(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_schar start\n"); /* -d and !-p */ if (options->d && !options->p) @@ -3943,6 +3958,7 @@ hsize_t diff_schar(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_schar finish\n"); return nfound; } @@ -3979,6 +3995,7 @@ hsize_t diff_uchar(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_uchar start\n"); /* -d and !-p */ if (options->d && !options->p) @@ -4121,6 +4138,7 @@ hsize_t diff_uchar(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_uchar finish\n"); return nfound; } @@ -4155,6 +4173,7 @@ hsize_t diff_short(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_short start\n"); /* -d and !-p */ if (options->d && !options->p) { @@ -4298,6 +4317,7 @@ hsize_t diff_short(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_short finish\n"); return nfound; } @@ -4333,6 +4353,7 @@ hsize_t diff_ushort(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_ushort start\n"); /* -d and !-p */ if (options->d && !options->p) { @@ -4476,6 +4497,7 @@ hsize_t diff_ushort(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_ushort finish\n"); return nfound; } @@ -4512,6 +4534,7 @@ hsize_t diff_int(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_int start\n"); /* -d and !-p */ if (options->d && !options->p) { @@ -4655,6 +4678,7 @@ hsize_t diff_int(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_int finish\n"); return nfound; } @@ -4691,6 +4715,7 @@ hsize_t diff_uint(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_uint start\n"); /* -d and !-p */ if (options->d && !options->p) { @@ -4832,6 +4857,7 @@ hsize_t diff_uint(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_uint finish\n"); return nfound; } @@ -4868,6 +4894,7 @@ hsize_t diff_long(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_long start\n"); /* -d and !-p */ if (options->d && !options->p) { @@ -5014,6 +5041,7 @@ hsize_t diff_long(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_long finish\n"); return nfound; } @@ -5051,6 +5079,7 @@ hsize_t diff_ulong(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_ulong start\n"); /* -d and !-p */ if (options->d && !options->p) @@ -5198,6 +5227,7 @@ hsize_t diff_ulong(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_ulong finish\n"); return nfound; } @@ -5234,6 +5264,7 @@ hsize_t diff_llong(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_llong start\n"); /* -d and !-p */ if (options->d && !options->p) { @@ -5371,6 +5402,7 @@ hsize_t diff_llong(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_llong finish\n"); return nfound; } @@ -5408,6 +5440,7 @@ hsize_t diff_ullong(unsigned char *mem1, double per; int both_zero; + h5difftrace("diff_ullong start\n"); /* -d and !-p */ if (options->d && !options->p) { @@ -5549,6 +5582,7 @@ hsize_t diff_ullong(unsigned char *mem1, } /* nelmts */ } + h5difftrace("diff_ullong finish\n"); return nfound; } @@ -5575,6 +5609,7 @@ int ull2float(unsigned long long ull_value, float *f_value) size_t src_size; size_t dst_size; + h5difftrace("ull2float start\n"); if((dxpl_id = H5Pcreate(H5P_DATASET_XFER))<0) return -1; @@ -5592,6 +5627,7 @@ int ull2float(unsigned long long ull_value, float *f_value) if(buf) HDfree(buf); + h5difftrace("ull2float finish\n"); return 0; @@ -5601,6 +5637,7 @@ error: } H5E_END_TRY; if(buf) HDfree(buf); + h5difftrace("ull2float errored\n"); return -1; } @@ -5620,6 +5657,7 @@ error: static hbool_t equal_double(double value, double expected, diff_opt_t *options) { + h5difftrace("equal_double start\n"); if ( options->do_nans ) { @@ -5656,6 +5694,7 @@ hbool_t equal_double(double value, double expected, diff_opt_t *options) if ( ABS( (value-expected) ) < DBL_EPSILON) return TRUE; } + h5difftrace("equal_double finish\n"); return FALSE; } @@ -5673,6 +5712,7 @@ hbool_t equal_double(double value, double expected, diff_opt_t *options) static hbool_t equal_ldouble(long double value, long double expected, diff_opt_t *options) { + h5difftrace("equal_ldouble start\n"); if ( options->do_nans ) { @@ -5709,6 +5749,7 @@ hbool_t equal_ldouble(long double value, long double expected, diff_opt_t *optio if ( ABS( (value-expected) ) < DBL_EPSILON) return TRUE; } + h5difftrace("equal_ldouble finish\n"); return FALSE; } @@ -5730,6 +5771,7 @@ hbool_t equal_ldouble(long double value, long double expected, diff_opt_t *optio static hbool_t equal_float(float value, float expected, diff_opt_t *options) { + h5difftrace("equal_float start\n"); if ( options->do_nans ) { @@ -5766,6 +5808,7 @@ hbool_t equal_float(float value, float expected, diff_opt_t *options) if ( ABS( (value-expected) ) < FLT_EPSILON) return TRUE; } + h5difftrace("equal_float finish\n"); return FALSE; @@ -5795,6 +5838,7 @@ my_isnan(dtype_t type, void *val) int retval = 0; char s[256]; + h5difftrace("my_isnan start\n"); if (FLT_FLOAT==type) { float x; @@ -5893,6 +5937,7 @@ my_isnan(dtype_t type, void *val) } } #endif /*H5_VMS*/ + h5difftrace("my_isnan finish\n"); return retval; } diff --git a/tools/lib/h5diff_attr.c b/tools/lib/h5diff_attr.c index 85cd01f..144159a 100644 --- a/tools/lib/h5diff_attr.c +++ b/tools/lib/h5diff_attr.c @@ -405,6 +405,14 @@ hsize_t diff_attr(hid_t loc1_id, continue; } + /*----------------------------------------------------------------- + * "upgrade" the smaller memory size + *------------------------------------------------------------------ + */ + if (FAIL == match_up_memsize (ftype1_id, ftype2_id, + &mtype1_id, &mtype2_id, + &msize1, &msize2)) + goto error; /*--------------------------------------------------------------------- * read diff --git a/tools/lib/h5diff_dset.c b/tools/lib/h5diff_dset.c index c1ed429..f9c7d1c 100644 --- a/tools/lib/h5diff_dset.c +++ b/tools/lib/h5diff_dset.c @@ -218,6 +218,7 @@ hsize_t diff_datasetid( hid_t did1, int i; unsigned int vl_data = 0; /*contains VL datatypes */ + h5difftrace("diff_datasetid start\n"); /* Get the dataspace handle */ if ( (sid1 = H5Dget_space(did1)) < 0 ) goto error; @@ -263,6 +264,7 @@ hsize_t diff_datasetid( hid_t did1, * check for empty datasets *------------------------------------------------------------------------- */ + h5difftrace("check for empty datasets\n"); storage_size1=H5Dget_storage_size(did1); storage_size2=H5Dget_storage_size(did2); @@ -300,6 +302,7 @@ hsize_t diff_datasetid( hid_t did1, * memory type and sizes *------------------------------------------------------------------------- */ + h5difftrace("check for memory type and sizes\n"); if ((m_tid1=h5tools_get_native_type(f_tid1)) < 0) goto error; @@ -315,10 +318,12 @@ hsize_t diff_datasetid( hid_t did1, */ if (can_compare) { + h5difftrace("can_compare for sign\n"); sign1=H5Tget_sign(m_tid1); sign2=H5Tget_sign(m_tid2); if ( sign1 != sign2 ) { + h5difftrace("sign1 != sign2\n"); if ((options->m_verbose||options->m_list_not_cmp) && obj1_name && obj2_name) { parallel_print("Not comparable: <%s> has sign %s ", obj1_name, get_sign(sign1)); @@ -341,6 +346,7 @@ hsize_t diff_datasetid( hid_t did1, */ if(can_compare) /* it is possible to compare */ { + h5difftrace("can_compare attempt\n"); /*----------------------------------------------------------------- * get number of elements @@ -360,26 +366,12 @@ hsize_t diff_datasetid( hid_t did1, * "upgrade" the smaller memory size *------------------------------------------------------------------ */ + h5difftrace("upgrade the smaller memory size?\n"); - if(m_size1 != m_size2) { - if(m_size1 < m_size2) { - H5Tclose(m_tid1); - - if((m_tid1 = h5tools_get_native_type(f_tid2)) < 0) - goto error; - - m_size1 = H5Tget_size(m_tid1); - } /* end if */ - else { - H5Tclose(m_tid2); - - if((m_tid2 = h5tools_get_native_type(f_tid1)) < 0) - goto error; - - m_size2 = H5Tget_size(m_tid2); - } /* end else */ - } /* end if */ - HDassert(m_size1 == m_size2); + if (FAIL == match_up_memsize (f_tid1, f_tid2, + &m_tid1, &m_tid2, + &m_size1, &m_size2)) + goto error; /* print names */ if(obj1_name) @@ -399,6 +391,7 @@ hsize_t diff_datasetid( hid_t did1, } /* end if */ if(buf1 != NULL && buf2 != NULL) { + h5difftrace("buf1 != NULL && buf2 != NULL\n"); if(H5Dread(did1, m_tid1, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf1) < 0) goto error; if(H5Dread(did2, m_tid2, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf2) < 0) @@ -519,6 +512,7 @@ hsize_t diff_datasetid( hid_t did1, * the if condition refers to cases when the dataset is a referenced object *------------------------------------------------------------------------- */ + h5difftrace("compare attributes?\n"); if(obj1_name) nfound += diff_attr(did1,did2,obj1_name,obj2_name,options); @@ -526,6 +520,7 @@ hsize_t diff_datasetid( hid_t did1, * close *------------------------------------------------------------------------- */ + h5difftrace("compare attributes?\n"); /* free */ if(buf1 != NULL) { @@ -553,6 +548,7 @@ hsize_t diff_datasetid( hid_t did1, H5Tclose(m_tid1); H5Tclose(m_tid2); } H5E_END_TRY; + h5difftrace("diff_datasetid finish\n"); return nfound; @@ -603,6 +599,7 @@ error: H5Tclose(m_tid2); /* enable error reporting */ } H5E_END_TRY; + h5difftrace("diff_datasetid errored\n"); return nfound; } diff --git a/tools/lib/h5diff_util.c b/tools/lib/h5diff_util.c index 0d476b6..aefd641 100644 --- a/tools/lib/h5diff_util.c +++ b/tools/lib/h5diff_util.c @@ -311,4 +311,46 @@ void print_found(hsize_t nfound) } +/*----------------------------------------------------------------- + * Function: match_up_memsize + * + * Purpose: match smaller memory size up to bigger memory size + *------------------------------------------------------------------ + */ +herr_t match_up_memsize (hid_t f_tid1_id, hid_t f_tid2_id, + hid_t *m_tid1, hid_t *m_tid2, + size_t *m_size1, size_t *m_size2) +{ + herr_t ret = SUCCEED; + + if( (*m_size1) != (*m_size2) ) + { + if( (*m_size1) < (*m_size2) ) + { + H5Tclose( *m_tid1 ); + + if(( (*m_tid1) = h5tools_get_native_type(f_tid2_id)) < 0) + { + ret = FAIL; + goto out; + } + + *m_size1 = H5Tget_size( *m_tid1 ); + } /* end if */ + else { + H5Tclose(*m_tid2); + if(( (*m_tid2) = h5tools_get_native_type(f_tid1_id)) < 0) + { + ret = FAIL; + goto out; + } + + *m_size2 = H5Tget_size(*m_tid2); + } /* end else */ + } /* end if */ + HDassert( (*m_size1) == (*m_size2) ); + +out: + return ret; +} diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c index 495aca1..7b6098d 100644 --- a/tools/lib/h5tools.c +++ b/tools/lib/h5tools.c @@ -1072,256 +1072,6 @@ init_acc_pos(h5tools_context_t *ctx, hsize_t *dims) * Failure: FAIL *------------------------------------------------------------------------- */ - -#ifdef DEBUG_H5DUMP_BIN -int -render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem) -{ - HERR_INIT(int, SUCCEED) - unsigned char *mem = (unsigned char*)_mem; - size_t size; /* datum size */ - float tempfloat; - double tempdouble; - unsigned long long tempullong; - long long templlong; - unsigned long tempulong; - long templong; - unsigned int tempuint; - int tempint; - unsigned short tempushort; - short tempshort; - unsigned char tempuchar; - char tempschar; -#if H5_SIZEOF_LONG_DOUBLE !=0 - long double templdouble; -#endif - static char fmt_llong[8], fmt_ullong[8]; - if (!fmt_llong[0]) { - HDsprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH); - HDsprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH); - } - - if((size = H5Tget_size(tid)) == 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); - - if (H5Tequal(tid, H5T_NATIVE_FLOAT)) { - HDmemcpy(&tempfloat, mem, sizeof(float)); - HDfprintf(stream, "%g ", tempfloat); - } - else if (H5Tequal(tid, H5T_NATIVE_DOUBLE)) { - HDmemcpy(&tempdouble, mem, sizeof(double)); - HDfprintf(stream, "%g ", tempdouble); - } -#if H5_SIZEOF_LONG_DOUBLE !=0 - else if (H5Tequal(tid, H5T_NATIVE_LDOUBLE)) { - HDmemcpy(&templdouble, mem, sizeof(long double)); - HDfprintf(stream, "%Lf ", templdouble); - } -#endif - else if (H5T_STRING == H5Tget_class(tid)) { - unsigned int i; - H5T_str_t pad; - char *s; - - pad = H5Tget_strpad(tid); - - if (H5Tis_variable_str(tid)) { - s = *(char**) mem; - if (s != NULL) - size = HDstrlen(s); - } - else { - s = (char *) mem; - if((size = H5Tget_size(tid)) == 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_size failed"); - } - for (i = 0; i < size && (s[i] || pad != H5T_STR_NULLTERM); i++) { - HDmemcpy(&tempuchar, &s[i], sizeof(unsigned char)); - HDfprintf(stream, "%d", tempuchar); - } /* i */ - } - else if (H5Tequal(tid, H5T_NATIVE_INT)) { - HDmemcpy(&tempint, mem, sizeof(int)); - HDfprintf(stream, "%d ", tempint); - } - else if (H5Tequal(tid, H5T_NATIVE_UINT)) { - HDmemcpy(&tempuint, mem, sizeof(unsigned int)); - HDfprintf(stream, "%u ", tempuint); - } - else if (H5Tequal(tid, H5T_NATIVE_SCHAR)) { - HDmemcpy(&tempschar, mem, sizeof(char)); - HDfprintf(stream, "%d ", tempschar); - } - else if (H5Tequal(tid, H5T_NATIVE_UCHAR)) { - HDmemcpy(&tempuchar, mem, sizeof(unsigned char)); - HDfprintf(stream, "%u ", tempuchar); - } - else if (H5Tequal(tid, H5T_NATIVE_SHORT)) { - HDmemcpy(&tempshort, mem, sizeof(short)); - HDfprintf(stream, "%d ", tempshort); - } - else if (H5Tequal(tid, H5T_NATIVE_USHORT)) { - HDmemcpy(&tempushort, mem, sizeof(unsigned short)); - HDfprintf(stream, "%u ", tempushort); - } - else if (H5Tequal(tid, H5T_NATIVE_LONG)) { - HDmemcpy(&templong, mem, sizeof(long)); - HDfprintf(stream, "%ld ", templong); - } - else if (H5Tequal(tid, H5T_NATIVE_ULONG)) { - HDmemcpy(&tempulong, mem, sizeof(unsigned long)); - HDfprintf(stream, "%lu ", tempulong); - } - else if (H5Tequal(tid, H5T_NATIVE_LLONG)) { - HDmemcpy(&templlong, mem, sizeof(long long)); - HDfprintf(stream, fmt_llong, templlong); - } - else if (H5Tequal(tid, H5T_NATIVE_ULLONG)) { - HDmemcpy(&tempullong, mem, sizeof(unsigned long long)); - HDfprintf(stream, fmt_ullong, tempullong); - } - else if (H5Tequal(tid, H5T_NATIVE_HSSIZE)) { - if (sizeof(hssize_t) == sizeof(int)) { - HDmemcpy(&tempint, mem, sizeof(int)); - HDfprintf(stream, "%d ", tempint); - } - else if (sizeof(hssize_t) == sizeof(long)) { - HDmemcpy(&templong, mem, sizeof(long)); - HDfprintf(stream, "%ld ", templong); - } - else { - HDmemcpy(&templlong, mem, sizeof(long long)); - HDfprintf(stream, fmt_llong, templlong); - } - } - else if (H5Tequal(tid, H5T_NATIVE_HSIZE)) { - if (sizeof(hsize_t) == sizeof(int)) { - HDmemcpy(&tempuint, mem, sizeof(unsigned int)); - HDfprintf(stream, "%u ", tempuint); - } - else if (sizeof(hsize_t) == sizeof(long)) { - HDmemcpy(&tempulong, mem, sizeof(unsigned long)); - HDfprintf(stream, "%lu ", tempulong); - } - else { - HDmemcpy(&tempullong, mem, sizeof(unsigned long long)); - HDfprintf(stream, fmt_ullong, tempullong); - } - } - else if (H5Tget_class(tid) == H5T_COMPOUND) { - unsigned j; - hid_t memb; - unsigned nmembs; - size_t offset; - - nmembs = H5Tget_nmembers(tid); - - for (j = 0; j < nmembs; j++) { - offset = H5Tget_member_offset(tid, j); - memb = H5Tget_member_type(tid, j); - - if (render_bin_output(stream, container, memb, mem + offset) < 0) - return FAIL; - - H5Tclose(memb); - } - } - else if (H5Tget_class(tid) == H5T_ENUM) { - unsigned int i; - if (1 == size) { - HDfprintf(stream, "0x%02x", mem[0]); - } - else { - for (i = 0; i < size; i++) { - HDfprintf(stream, "%s%02x", i?":":"", mem[i]); - } /*i*/ - }/*else 1 */ - } - else if (H5Tget_class(tid) == H5T_ARRAY) { - int k, ndims; - hsize_t i, dims[H5S_MAX_RANK], temp_nelmts, nelmts; - hid_t memb; - - /* get the array's base datatype for each element */ - memb = H5Tget_super(tid); - size = H5Tget_size(memb); - ndims = H5Tget_array_ndims(tid); - H5Tget_array_dims2(tid, dims); - HDassert(ndims >= 1 && ndims <= H5S_MAX_RANK); - - /* calculate the number of array elements */ - for (k = 0, nelmts = 1; k < ndims; k++) { - temp_nelmts = nelmts; - temp_nelmts *= dims[k]; - nelmts = (size_t) temp_nelmts; - } - - /* dump the array element */ - for (i = 0; i < nelmts; i++) { - if (render_bin_output(stream, container, memb, mem + i * size) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "render_bin_output failed"); - } - - H5Tclose(memb); - } - else if (H5Tget_class(tid) == H5T_VLEN) { - unsigned int i; - hsize_t nelmts; - hid_t memb; - - /* get the VL sequences's base datatype for each element */ - memb = H5Tget_super(tid); - size = H5Tget_size(memb); - - /* Get the number of sequence elements */ - nelmts = ((hvl_t *) mem)->len; - - for (i = 0; i < nelmts; i++) { - /* dump the array element */ - if (render_bin_output(stream, container, memb, ((char *) (((hvl_t *) mem)->p)) + i * size) < 0) - H5E_THROW(FAIL, H5E_tools_min_id_g, "render_bin_output failed"); - } - H5Tclose(memb); - } - else if (H5Tequal(tid, H5T_STD_REF_DSETREG)) { - if (region_output) { - /* region data */ - hid_t region_id, region_space; - H5S_sel_type region_type; - - region_id = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, mem); - if (region_id >= 0) { - region_space = H5Rget_region(container, H5R_DATASET_REGION, mem); - if (region_space >= 0) { - region_type = H5Sget_select_type(region_space); - if(region_type == H5S_SEL_POINTS) - render_bin_output_region_points(region_space, region_id, stream, container); - else - render_bin_output_region_blocks(region_space, region_id, stream, container); - H5Sclose(region_space); - } /* end if (region_space >= 0) */ - H5Dclose(region_id); - } /* end if (region_id >= 0) */ - } /* end if (region_output... */ - } - else if (H5Tequal(tid, H5T_STD_REF_OBJ)) { - } - else { - size_t i; - if (1 == size) { - HDfprintf(stream, "0x%02x", mem[0]); - } - else { - for (i = 0; i < size; i++) { - HDfprintf(stream, "%s%02x", i?":":"", mem[i]); - } /*i*/ - }/*else 1 */ - } - -CATCH - return ret_value; -} -#else int render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t block_nelmts) { @@ -1504,7 +1254,6 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t CATCH return ret_value; } -#endif /*------------------------------------------------------------------------- * Audience: Public diff --git a/tools/lib/h5tools_utils.c b/tools/lib/h5tools_utils.c index 11ab5f3..79322bc 100644 --- a/tools/lib/h5tools_utils.c +++ b/tools/lib/h5tools_utils.c @@ -852,6 +852,8 @@ H5tools_get_symlink_info(hid_t file_id, const char * linkpath, h5tool_link_info_ /* set target obj type to return */ link_info->trg_type = trg_oinfo.type; + link_info->objno = trg_oinfo.addr; + link_info->fileno = trg_oinfo.fileno; } /* end if */ else link_info->trg_type = H5O_TYPE_UNKNOWN; diff --git a/tools/lib/h5tools_utils.h b/tools/lib/h5tools_utils.h index f30974a..10c643d 100644 --- a/tools/lib/h5tools_utils.h +++ b/tools/lib/h5tools_utils.h @@ -161,6 +161,8 @@ typedef struct { H5O_type_t trg_type; /* OUT: target type */ const char *trg_path; /* OUT: target obj path. This must be freed * when used with H5tools_get_symlink_info() */ + haddr_t objno; /* OUT: target object address */ + unsigned long fileno; /* OUT: File number that target object is located in */ H5L_info_t linfo; /* OUT: link info */ h5tool_opt_t opt; /* IN: options */ } h5tool_link_info_t; diff --git a/tools/lib/h5trav.c b/tools/lib/h5trav.c index 0215c46..8455360 100644 --- a/tools/lib/h5trav.c +++ b/tools/lib/h5trav.c @@ -354,6 +354,31 @@ trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type) info->paths[idx].objno = HADDR_UNDEF; } /* end trav_info_add() */ + +/*------------------------------------------------------------------------- + * Function: trav_fileinfo_add + * + * Purpose: Add a file addr & fileno to info struct + * + * Return: void + * + *------------------------------------------------------------------------- + */ +void +trav_fileinfo_add(trav_info_t *info, hid_t loc_id) +{ + H5O_info_t oinfo; + size_t idx = info->nused - 1; + + if ( info->paths[idx].path && HDstrcmp(info->paths[idx].path, ".")) + H5Oget_info_by_name(loc_id, info->paths[idx].path, &oinfo, H5P_DEFAULT); + else + H5Oget_info(loc_id, &oinfo); + + info->paths[idx].objno = oinfo.addr; + info->paths[idx].fileno = oinfo.fileno; +} /* end trav_fileinfo_add() */ + /*------------------------------------------------------------------------- * Function: trav_info_visit_obj diff --git a/tools/lib/h5trav.h b/tools/lib/h5trav.h index c416cf8..3548c6b 100644 --- a/tools/lib/h5trav.h +++ b/tools/lib/h5trav.h @@ -177,6 +177,8 @@ H5TOOLS_DLL void trav_info_free(trav_info_t *info); H5TOOLS_DLL void trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type); +H5TOOLS_DLL void trav_fileinfo_add(trav_info_t *info, hid_t loc_id); + /*------------------------------------------------------------------------- * table private functions *------------------------------------------------------------------------- diff --git a/tools/misc/CMakeLists.txt b/tools/misc/CMakeLists.txt index 0687323..909b2ca 100644 --- a/tools/misc/CMakeLists.txt +++ b/tools/misc/CMakeLists.txt @@ -319,9 +319,9 @@ ENDIF (BUILD_TESTING) # Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
-INSTALL_PROGRAM_PDB (h5debug ${HDF5_INSTALL_BIN_DIR} toolsapplications) -INSTALL_PROGRAM_PDB (h5repart ${HDF5_INSTALL_BIN_DIR} toolsapplications) -INSTALL_PROGRAM_PDB (h5mkgrp ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5debug ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5repart ${HDF5_INSTALL_BIN_DIR} toolsapplications) +#INSTALL_PROGRAM_PDB (h5mkgrp ${HDF5_INSTALL_BIN_DIR} toolsapplications) INSTALL ( TARGETS diff --git a/tools/misc/Makefile.am b/tools/misc/Makefile.am index 11c86fa..0055f39 100644 --- a/tools/misc/Makefile.am +++ b/tools/misc/Makefile.am @@ -25,7 +25,7 @@ INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib #test script and program TEST_PROG=h5repart_gentest talign -TEST_SCRIPT=testh5repart.sh $(srcdir)/testh5mkgrp.sh +TEST_SCRIPT=testh5repart.sh testh5mkgrp.sh check_PROGRAMS=$(TEST_PROG) repart_test check_SCRIPTS=$(TEST_SCRIPT) diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in index ce8e991..8c2e1c1 100644 --- a/tools/misc/Makefile.in +++ b/tools/misc/Makefile.in @@ -1,9 +1,8 @@ -# Makefile.in generated by automake 1.11.1 from Makefile.am. +# Makefile.in generated by automake 1.12.3 from Makefile.am. # @configure_input@ -# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, -# Inc. +# Copyright (C) 1994-2012 Free Software Foundation, Inc. + # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -34,6 +33,23 @@ VPATH = @srcdir@ +am__make_dryrun = \ + { \ + am__dry=no; \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + echo 'am--echo: ; @echo "AM" OK' | $(MAKE) -f - 2>/dev/null \ + | grep '^AM OK$$' >/dev/null || am__dry=yes;; \ + *) \ + for am__flg in $$MAKEFLAGS; do \ + case $$am__flg in \ + *=*|--*) ;; \ + *n*) am__dry=yes; break;; \ + esac; \ + done;; \ + esac; \ + test $$am__dry = yes; \ + } pkgdatadir = $(datadir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ pkglibdir = $(libdir)/@PACKAGE@ @@ -53,20 +69,22 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/h5cc.in $(srcdir)/testh5repart.sh.in \ + $(srcdir)/h5cc.in $(srcdir)/testh5mkgrp.sh.in \ + $(srcdir)/testh5repart.sh.in $(top_srcdir)/bin/depcomp \ + $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am check_PROGRAMS = $(am__EXEEXT_1) repart_test$(EXEEXT) bin_PROGRAMS = h5debug$(EXEEXT) h5repart$(EXEEXT) h5mkgrp$(EXEEXT) -TESTS = $(check_PROGRAMS) $(check_SCRIPTS) +TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT) subdir = tools/misc ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 -am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__aclocal_m4_deps = $(top_srcdir)/configure.ac am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h -CONFIG_CLEAN_FILES = h5cc testh5repart.sh +CONFIG_CLEAN_FILES = h5cc testh5mkgrp.sh testh5repart.sh CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" "$(DESTDIR)$(bindir)" am__EXEEXT_1 = h5repart_gentest$(EXEEXT) talign$(EXEEXT) @@ -75,9 +93,10 @@ h5debug_SOURCES = h5debug.c h5debug_OBJECTS = h5debug.$(OBJEXT) h5debug_LDADD = $(LDADD) h5debug_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -AM_V_lt = $(am__v_lt_$(V)) -am__v_lt_ = $(am__v_lt_$(AM_DEFAULT_VERBOSITY)) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) am__v_lt_0 = --silent +am__v_lt_1 = h5debug_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(h5debug_LDFLAGS) $(LDFLAGS) -o $@ @@ -128,7 +147,25 @@ am__nobase_list = $(am__nobase_strip_setup); \ am__base_list = \ sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \ sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g' +am__uninstall_files_from_dir = { \ + test -z "$$files" \ + || { test ! -d "$$dir" && test ! -f "$$dir" && test ! -r "$$dir"; } \ + || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ + $(am__cd) "$$dir" && rm -f $$files; }; \ + } SCRIPTS = $(bin_SCRIPTS) +AM_V_P = $(am__v_P_@AM_V@) +am__v_P_ = $(am__v_P_@AM_DEFAULT_V@) +am__v_P_0 = false +am__v_P_1 = : +AM_V_GEN = $(am__v_GEN_@AM_V@) +am__v_GEN_ = $(am__v_GEN_@AM_DEFAULT_V@) +am__v_GEN_0 = @echo " GEN " $@; +am__v_GEN_1 = +AM_V_at = $(am__v_at_@AM_V@) +am__v_at_ = $(am__v_at_@AM_DEFAULT_V@) +am__v_at_0 = @ +am__v_at_1 = DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles @@ -139,32 +176,35 @@ LTCOMPILE = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) \ $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ $(AM_CFLAGS) $(CFLAGS) -AM_V_CC = $(am__v_CC_$(V)) -am__v_CC_ = $(am__v_CC_$(AM_DEFAULT_VERBOSITY)) -am__v_CC_0 = @echo " CC " $@; -AM_V_at = $(am__v_at_$(V)) -am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY)) -am__v_at_0 = @ +AM_V_CC = $(am__v_CC_@AM_V@) +am__v_CC_ = $(am__v_CC_@AM_DEFAULT_V@) +am__v_CC_0 = @echo " CC " $@; +am__v_CC_1 = CCLD = $(CC) LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(AM_LDFLAGS) $(LDFLAGS) -o $@ -AM_V_CCLD = $(am__v_CCLD_$(V)) -am__v_CCLD_ = $(am__v_CCLD_$(AM_DEFAULT_VERBOSITY)) -am__v_CCLD_0 = @echo " CCLD " $@; -AM_V_GEN = $(am__v_GEN_$(V)) -am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY)) -am__v_GEN_0 = @echo " GEN " $@; +AM_V_CCLD = $(am__v_CCLD_@AM_V@) +am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) +am__v_CCLD_0 = @echo " CCLD " $@; +am__v_CCLD_1 = SOURCES = h5debug.c h5mkgrp.c h5repart.c h5repart_gentest.c \ repart_test.c talign.c DIST_SOURCES = h5debug.c h5mkgrp.c h5repart.c h5repart_gentest.c \ repart_test.c talign.c +am__can_run_installinfo = \ + case $$AM_UPDATE_INFO_DIR in \ + n|no|NO) false;; \ + *) (install-info --version) >/dev/null 2>&1;; \ + esac ETAGS = etags CTAGS = ctags -am__tty_colors = \ -red=; grn=; lgn=; blu=; std= +am__tty_colors_dummy = \ + mgn= red= grn= lgn= blu= brg= std=; \ + am__color_tests=no +am__tty_colors = $(am__tty_colors_dummy) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) -ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ACLOCAL = @ACLOCAL@ ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -182,12 +222,9 @@ AM_LDFLAGS = @AM_LDFLAGS@ @H5_LDFLAGS@ AM_MAKEFLAGS = @AM_MAKEFLAGS@ AR = @AR@ AS = @AS@ - -# Set the paths for AFS installs of autotools for Linux machines -# Ideally, these tools should never be needed during the build. -AUTOCONF = /home1/packages/autoconf/autoconf-2.60/bin/autoconf -AUTOHEADER = /home1/packages/autoconf/autoconf-2.60/bin/autoheader -AUTOMAKE = /home1/packages/automake/automake-1.9.6/bin/automake-1.9 +AUTOCONF = @AUTOCONF@ +AUTOHEADER = @AUTOHEADER@ +AUTOMAKE = @AUTOMAKE@ AWK = @AWK@ BYTESEX = @BYTESEX@ CC = @CC@ @@ -456,7 +493,7 @@ INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib #test script and program TEST_PROG = h5repart_gentest talign -TEST_SCRIPT = testh5repart.sh $(srcdir)/testh5mkgrp.sh +TEST_SCRIPT = testh5repart.sh testh5mkgrp.sh check_SCRIPTS = $(TEST_SCRIPT) SCRIPT_DEPEND = h5repart$(EXEEXT) h5mkgrp$(EXEEXT) bin_SCRIPTS = h5redeploy @@ -491,6 +528,10 @@ LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ $(EXTRA_PROG) +chk_TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_EXTENSIONS = .sh +SH_LOG_COMPILER = $(SHELL) +AM_SH_LOG_FLAGS = TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) @@ -520,6 +561,7 @@ Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; +$(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am: $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh @@ -531,12 +573,17 @@ $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) $(am__aclocal_m4_deps): h5cc: $(top_builddir)/config.status $(srcdir)/h5cc.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ +testh5mkgrp.sh: $(top_builddir)/config.status $(srcdir)/testh5mkgrp.sh.in + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ testh5repart.sh: $(top_builddir)/config.status $(srcdir)/testh5repart.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do echo "$$p $$p"; done | \ sed 's/$(EXEEXT)$$//' | \ while read p p1; do if test -f $$p || test -f $$p1; \ @@ -585,28 +632,31 @@ clean-checkPROGRAMS: list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ echo " rm -f" $$list; \ rm -f $$list -h5debug$(EXEEXT): $(h5debug_OBJECTS) $(h5debug_DEPENDENCIES) +h5debug$(EXEEXT): $(h5debug_OBJECTS) $(h5debug_DEPENDENCIES) $(EXTRA_h5debug_DEPENDENCIES) @rm -f h5debug$(EXEEXT) $(AM_V_CCLD)$(h5debug_LINK) $(h5debug_OBJECTS) $(h5debug_LDADD) $(LIBS) -h5mkgrp$(EXEEXT): $(h5mkgrp_OBJECTS) $(h5mkgrp_DEPENDENCIES) +h5mkgrp$(EXEEXT): $(h5mkgrp_OBJECTS) $(h5mkgrp_DEPENDENCIES) $(EXTRA_h5mkgrp_DEPENDENCIES) @rm -f h5mkgrp$(EXEEXT) $(AM_V_CCLD)$(h5mkgrp_LINK) $(h5mkgrp_OBJECTS) $(h5mkgrp_LDADD) $(LIBS) -h5repart$(EXEEXT): $(h5repart_OBJECTS) $(h5repart_DEPENDENCIES) +h5repart$(EXEEXT): $(h5repart_OBJECTS) $(h5repart_DEPENDENCIES) $(EXTRA_h5repart_DEPENDENCIES) @rm -f h5repart$(EXEEXT) $(AM_V_CCLD)$(h5repart_LINK) $(h5repart_OBJECTS) $(h5repart_LDADD) $(LIBS) -h5repart_gentest$(EXEEXT): $(h5repart_gentest_OBJECTS) $(h5repart_gentest_DEPENDENCIES) +h5repart_gentest$(EXEEXT): $(h5repart_gentest_OBJECTS) $(h5repart_gentest_DEPENDENCIES) $(EXTRA_h5repart_gentest_DEPENDENCIES) @rm -f h5repart_gentest$(EXEEXT) $(AM_V_CCLD)$(LINK) $(h5repart_gentest_OBJECTS) $(h5repart_gentest_LDADD) $(LIBS) -repart_test$(EXEEXT): $(repart_test_OBJECTS) $(repart_test_DEPENDENCIES) +repart_test$(EXEEXT): $(repart_test_OBJECTS) $(repart_test_DEPENDENCIES) $(EXTRA_repart_test_DEPENDENCIES) @rm -f repart_test$(EXEEXT) $(AM_V_CCLD)$(LINK) $(repart_test_OBJECTS) $(repart_test_LDADD) $(LIBS) -talign$(EXEEXT): $(talign_OBJECTS) $(talign_DEPENDENCIES) +talign$(EXEEXT): $(talign_OBJECTS) $(talign_DEPENDENCIES) $(EXTRA_talign_DEPENDENCIES) @rm -f talign$(EXEEXT) $(AM_V_CCLD)$(LINK) $(talign_OBJECTS) $(talign_LDADD) $(LIBS) install-binSCRIPTS: $(bin_SCRIPTS) @$(NORMAL_INSTALL) - test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" @list='$(bin_SCRIPTS)'; test -n "$(bindir)" || list=; \ + if test -n "$$list"; then \ + echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \ + fi; \ for p in $$list; do \ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ if test -f "$$d$$p"; then echo "$$d$$p"; echo "$$p"; else :; fi; \ @@ -634,9 +684,7 @@ uninstall-binSCRIPTS: @list='$(bin_SCRIPTS)'; test -n "$(bindir)" || exit 0; \ files=`for p in $$list; do echo "$$p"; done | \ sed -e 's,.*/,,;$(transform)'`; \ - test -n "$$list" || exit 0; \ - echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ - cd "$(DESTDIR)$(bindir)" && rm -f $$files + dir='$(DESTDIR)$(bindir)'; $(am__uninstall_files_from_dir) mostlyclean-compile: -rm -f *.$(OBJEXT) @@ -654,26 +702,23 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(AM_V_CC)$(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo -@am__fastdepCC_FALSE@ $(AM_V_CC) @AM_BACKSLASH@ -@AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ -@am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< mostlyclean-libtool: -rm -f *.lo @@ -730,6 +775,20 @@ GTAGS: && $(am__cd) $(top_srcdir) \ && gtags -i $(GTAGS_ARGS) "$$here" +cscopelist: $(HEADERS) $(SOURCES) $(LISP) + list='$(SOURCES) $(HEADERS) $(LISP)'; \ + case "$(srcdir)" in \ + [\\/]* | ?:[\\/]*) sdir="$(srcdir)" ;; \ + *) sdir=$(subdir)/$(srcdir) ;; \ + esac; \ + for i in $$list; do \ + if test -f "$$i"; then \ + echo "$(subdir)/$$i"; \ + else \ + echo "$$sdir/$$i"; \ + fi; \ + done >> $(top_builddir)/cscope.files + distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -782,10 +841,15 @@ install-am: all-am installcheck: installcheck-am install-strip: - $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ - install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ - `test -z '$(STRIP)' || \ - echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install + if test -z '$(STRIP)'; then \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + install; \ + else \ + $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ + install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ + "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \ + fi mostlyclean-generic: clean-generic: @@ -876,7 +940,7 @@ uninstall-am: uninstall-binPROGRAMS uninstall-binSCRIPTS \ .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool ctags distclean distclean-compile \ + clean-libtool cscopelist ctags distclean distclean-compile \ distclean-generic distclean-libtool distclean-tags distdir dvi \ dvi-am html html-am info info-am install install-am \ install-binPROGRAMS install-binSCRIPTS install-data \ @@ -916,7 +980,7 @@ h5redeploy: h5redeploy.in # build files in this directory. build-lib: $(LIB) build-progs: $(LIB) $(PROGS) -build-tests: $(LIB) $(PROGS) $(TESTS) +build-tests: $(LIB) $(PROGS) $(chk_TESTS) # General rule for recursive building targets. # BUILT_SOURCES contain targets that need to be built before anything else @@ -942,7 +1006,7 @@ check-clean :: # Tell Automake to build tests when the user types `make all' (this is # not its default behavior). Also build EXTRA_LIB and EXTRA_PROG since # Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(TESTS) +all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) # make install-doc doesn't do anything outside of doc directory, but # Makefiles should recognize it. @@ -966,7 +1030,7 @@ check-install: installcheck # Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. # The timestamps give a rough idea how much time the tests use. # -# Note that targets in TESTS (defined above) will be built when the user +# Note that targets in chk_TESTS (defined above) will be built when the user # types 'make tests' or 'make check', but only programs in TEST_PROG, # TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. check-TESTS: test @@ -976,7 +1040,7 @@ test _test: @$(MAKE) build-check-p # Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(TESTS) +build-check-s: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1066,7 +1130,7 @@ $(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: fi # Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(TESTS) +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ fi @@ -1096,7 +1160,7 @@ build-check-p: $(LIB) $(PROGS) $(TESTS) fi # Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(TESTS) +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) @for vfd in $(VFD_LIST) dummy; do \ if test $$vfd != dummy; then \ echo "============================"; \ diff --git a/tools/misc/talign.c b/tools/misc/talign.c index 88ebaa6..b77d846 100644 --- a/tools/misc/talign.c +++ b/tools/misc/talign.c @@ -148,28 +148,31 @@ out: result = 1; mname = H5Tget_member_name(fix, 0); printf("%14s (%2d) %6s = %s\n", - mname, (int)H5Tget_member_offset(fix,0), + mname ? mname : "(null)", (int)H5Tget_member_offset(fix,0), string5, (char *)(data + H5Tget_member_offset(fix, 0))); - free(mname); + if(mname) + free(mname); fptr = (float *)(data + H5Tget_member_offset(fix, 1)); mname = H5Tget_member_name(fix, 1); printf("Data comparison:\n" "%14s (%2d) %6f = %f\n" " %6f = %f\n", - mname, (int)H5Tget_member_offset(fix,1), + mname ? mname : "(null)", (int)H5Tget_member_offset(fix,1), fok[0], fptr[0], fok[1], fptr[1]); - free(mname); + if(mname) + free(mname); fptr = (float *)(data + H5Tget_member_offset(fix, 2)); mname = H5Tget_member_name(fix, 2); printf("%14s (%2d) %6f = %f\n" " %6f = %6f\n", - mname, (int)H5Tget_member_offset(fix,2), + mname ? mname : "(null)", (int)H5Tget_member_offset(fix,2), fnok[0], fptr[0], fnok[1], fptr[1]); - free(mname); + if(mname) + free(mname); fptr = (float *)(data + H5Tget_member_offset(fix, 1)); printf("\n" diff --git a/tools/misc/testh5mkgrp.sh b/tools/misc/testh5mkgrp.sh.in index 7bb98cb..dc127e8 100644 --- a/tools/misc/testh5mkgrp.sh +++ b/tools/misc/testh5mkgrp.sh.in @@ -19,6 +19,8 @@ # Tuesday, February 13, 2007 # +srcdir=@srcdir@ + TESTNAME=h5mkgrp EXIT_SUCCESS=0 EXIT_FAILURE=1 @@ -37,10 +39,6 @@ OUTDIR=../testfiles CMP='cmp -s' DIFF='diff -c' -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi test -d $OUTDIR || mkdir $OUTDIR # Print a line-line message left justified in a field of 70 characters diff --git a/tools/misc/testh5repart.sh.in b/tools/misc/testh5repart.sh.in index 7d4e020..fc33e0e 100644 --- a/tools/misc/testh5repart.sh.in +++ b/tools/misc/testh5repart.sh.in @@ -15,6 +15,8 @@ # # Tests for the h5repart tool +srcdir=@srcdir@ + TESTNAME=h5repart EXIT_SUCCESS=0 EXIT_FAILURE=1 @@ -28,11 +30,6 @@ REPARTED_FAM_BIN=`pwd`/$REPARTED_FAM # The path of the test binary nerrors=0 verbose=yes -# The build (current) directory might be different than the source directory. -if test -z "$srcdir"; then - srcdir=. -fi - test -d ../testfiles || mkdir ../testfiles actual_dir=`pwd`/../testfiles diff --git a/tools/testfiles/h5dump-help.txt b/tools/testfiles/h5dump-help.txt index 5e0a8f1..74fc104 100644 --- a/tools/testfiles/h5dump-help.txt +++ b/tools/testfiles/h5dump-help.txt @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without diff --git a/tools/testfiles/tnofilename-with-packed-bits.ddl b/tools/testfiles/tnofilename-with-packed-bits.ddl index a82c94e..5e6f580 100644 --- a/tools/testfiles/tnofilename-with-packed-bits.ddl +++ b/tools/testfiles/tnofilename-with-packed-bits.ddl @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without diff --git a/tools/testfiles/tpbitsIncomplete.ddl b/tools/testfiles/tpbitsIncomplete.ddl index 72d54fc..10b5a23 100644 --- a/tools/testfiles/tpbitsIncomplete.ddl +++ b/tools/testfiles/tpbitsIncomplete.ddl @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without diff --git a/tools/testfiles/tpbitsLengthExceeded.ddl b/tools/testfiles/tpbitsLengthExceeded.ddl index d8b627c..17dd963 100644 --- a/tools/testfiles/tpbitsLengthExceeded.ddl +++ b/tools/testfiles/tpbitsLengthExceeded.ddl @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without diff --git a/tools/testfiles/tpbitsLengthPositive.ddl b/tools/testfiles/tpbitsLengthPositive.ddl index 39cef23..6d05b47 100644 --- a/tools/testfiles/tpbitsLengthPositive.ddl +++ b/tools/testfiles/tpbitsLengthPositive.ddl @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without diff --git a/tools/testfiles/tpbitsMaxExceeded.ddl b/tools/testfiles/tpbitsMaxExceeded.ddl index 5f35825..eca1248 100644 --- a/tools/testfiles/tpbitsMaxExceeded.ddl +++ b/tools/testfiles/tpbitsMaxExceeded.ddl @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without diff --git a/tools/testfiles/tpbitsOffsetExceeded.ddl b/tools/testfiles/tpbitsOffsetExceeded.ddl index 92cc816..b0c655d 100644 --- a/tools/testfiles/tpbitsOffsetExceeded.ddl +++ b/tools/testfiles/tpbitsOffsetExceeded.ddl @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without diff --git a/tools/testfiles/tpbitsOffsetNegative.ddl b/tools/testfiles/tpbitsOffsetNegative.ddl index c318834..213641b 100644 --- a/tools/testfiles/tpbitsOffsetNegative.ddl +++ b/tools/testfiles/tpbitsOffsetNegative.ddl @@ -1,22 +1,22 @@ usage: h5dump [OPTIONS] files OPTIONS - -h, --help Print a usage message and exit - -n, --contents Print a list of the file contents and exit + -h, --help Print a usage message and exit + -n, --contents Print a list of the file contents and exit Optional value 1 also prints attributes. - -B, --superblock Print the content of the super block - -H, --header Print the header only; no data is displayed - -A, --onlyattr Print the header and value of attributes - -i, --object-ids Print the object ids - -r, --string Print 1-byte integer datasets as ASCII - -e, --escape Escape non printing characters - -V, --version Print version number and exit + -B, --superblock Print the content of the super block + -H, --header Print the header only; no data is displayed + -A, --onlyattr Print the header and value of attributes + -i, --object-ids Print the object ids + -r, --string Print 1-byte integer datasets as ASCII + -e, --escape Escape non printing characters + -V, --version Print version number and exit -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the slash with a preceding backslash (\). (See example section below.) -d P, --dataset=P Print the specified dataset - -y, --noindex Do not print array indices with the data - -p, --properties Print dataset filters, storage layout and fill value + -y, --noindex Do not print array indices with the data + -p, --properties Print dataset filters, storage layout and fill value -f D, --filedriver=D Specify which driver to open the file with -g P, --group=P Print the specified group and all members -l P, --soft-link=P Print the value(s) of the specified soft link @@ -35,17 +35,17 @@ usage: h5dump [OPTIONS] files separated by commas. Offset is the beginning bit in the data value and length is the number of bits of the mask. - -R, --region Print dataset pointed by region references - -x, --xml Output in XML using Schema - -u, --use-dtd Output in XML using DTD + -R, --region Print dataset pointed by region references + -x, --xml Output in XML using Schema + -u, --use-dtd Output in XML using DTD -D U, --xml-dtd=U Use the DTD or schema at U - -X S, --xml-ns=S (XML Schema) Use qualified names n the XML + -X S, --xml-ns=S (XML Schema) Use qualified names n the XML ":": no namespace, default: "hdf5:" E.g., to dump a file called `-f', use h5dump -- -f --enable-error-stack Prints messages from the HDF5 error stack as they occur. --no-compact-subset Disable compact form of subsetting and allow the use - of "[" in datset names. + of "[" in dataset names. Subsetting is available by using the following options with a dataset attribute. Subsetting is done by selecting a hyperslab from the data. @@ -59,7 +59,8 @@ usage: h5dump [OPTIONS] files -c COUNT, --count=COUNT Number of blocks to include in selection -k BLOCK, --block=BLOCK Size of block in hyperslab START, COUNT, STRIDE, and BLOCK - is a list of integers the number of which are equal to the - number of dimensions in the dataspace being queried + number of dimensions in the dataspace being queried + (Alternate compact form of subsetting is described in the Reference Manual) D - is the file driver to use in opening the file. Acceptable values are "sec2", "family", "split", "multi", "direct", and "stream". Without |