diff options
Diffstat (limited to 'tools')
19 files changed, 2104 insertions, 540 deletions
diff --git a/tools/h5dump/testh5dump.sh.in b/tools/h5dump/testh5dump.sh.in index be05705..1a0f189 100644 --- a/tools/h5dump/testh5dump.sh.in +++ b/tools/h5dump/testh5dump.sh.in @@ -797,6 +797,40 @@ TOOLTEST5() { fi } +# ADD_HELP_TEST +TOOLTEST_HELP() { + + expect="$TESTDIR/$1" + actual="$TESTDIR/`basename $1 .txt`.out" + actual_err="$TESTDIR/`basename $1 .txt`.err" + shift + + # Run test. + TESTING $DUMPER $@ + ( + cd $TESTDIR + $RUNSERIAL $DUMPER_BIN "$@" + ) >$actual 2>$actual_err + cat $actual_err >> $actual + + if [ ! -f $expectdata ]; then + # Create the expect data file if it doesn't yet exist. + echo " CREATED" + cp $actual $expect-CREATED + elif $CMP $expect $actual; then + echo " PASSED" + else + echo "*FAILED*" + echo " Expected output (*.txt) differs from actual output (*.out)" + nerrors="`expr $nerrors + 1`" + fi + + # Clean up output file + if test -z "$HDF5_NOCLEANUP"; then + rm -f $actual $actual_err + fi + +} # Print a "SKIP" message SKIP() { @@ -873,7 +907,7 @@ IMPORTTEST() # prepare for test COPY_TESTFILES_TO_TESTDIR -#TOOLTEST h5dump-help.txt -h +TOOLTEST_HELP h5dump-help.txt -h # test data output redirection TOOLTEST tnoddl.ddl --enable-error-stack --ddl -y packedbits.h5 diff --git a/tools/h5repack/CMakeLists.txt b/tools/h5repack/CMakeLists.txt index f03ad69..176fc2b 100644 --- a/tools/h5repack/CMakeLists.txt +++ b/tools/h5repack/CMakeLists.txt @@ -44,6 +44,41 @@ IF (BUILD_TESTING) TARGET_LINK_LIBRARIES (h5repacktest ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) SET_TARGET_PROPERTIES (h5repacktest PROPERTIES FOLDER tools) + #----------------------------------------------------------------------------- + # If plugin library tests can be tested + #----------------------------------------------------------------------------- + IF (BUILD_SHARED_LIBS) + SET (HDF5_TOOL_PLUGIN_LIB_CORENAME "dynlibadd") + SET (HDF5_TOOL_PLUGIN_LIB_NAME "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_TOOL_PLUGIN_LIB_CORENAME}") + SET (HDF5_TOOL_PLUGIN_LIB_TARGET ${HDF5_TOOL_PLUGIN_LIB_CORENAME}) + ADD_DEFINITIONS (${HDF5_EXTRA_C_FLAGS}) + INCLUDE_DIRECTORIES (${HDF5_SRC_DIR}) + + ADD_LIBRARY (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${LIB_TYPE} ${HDF5_TEST_SRC_DIR}/dynlib1.c) + TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} " " " ") + TARGET_LINK_LIBRARIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) + H5_SET_LIB_OPTIONS ( + ${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} + ${LIB_TYPE} + HDF5_TOOL_PLUGIN_LIB_NAME_RELEASE + HDF5_TOOL_PLUGIN_LIB_NAME_DEBUG + ) + + # make plugins dir + FILE (MAKE_DIRECTORY "${CMAKE_BINARY_DIR}/plugins") + #----------------------------------------------------------------------------- + # Copy plugin library to a plugins folder + #----------------------------------------------------------------------------- + ADD_CUSTOM_COMMAND ( + TARGET ${HDF5_TOOL_PLUGIN_LIB_TARGET} + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different + "$<TARGET_FILE:${HDF5_TOOL_PLUGIN_LIB_TARGET}>" + "${CMAKE_BINARY_DIR}/plugins/$<TARGET_FILE_NAME:${HDF5_TOOL_PLUGIN_LIB_TARGET}>" + ) + ENDIF (BUILD_SHARED_LIBS) + INCLUDE (CMakeTests.cmake) ENDIF (BUILD_TESTING) diff --git a/tools/h5repack/CMakeTests.cmake b/tools/h5repack/CMakeTests.cmake index c27aaa0..7f8f71b 100644 --- a/tools/h5repack/CMakeTests.cmake +++ b/tools/h5repack/CMakeTests.cmake @@ -79,12 +79,15 @@ ) SET (LIST_OTHER_TEST_FILES + ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack-help.txt ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_ext.bin ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/ublock.bin ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack.info + ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/deflate_limit.h5repack_layout.h5.ddl ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout.h5.ddl - # tools/testfiles - ${HDF5_TOOLS_SRC_DIR}/testfiles/h5repack_filters.h5.ddl + ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_filters.h5.tst + ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout.h5-plugin_test.ddl + ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/plugin_test.h5repack_layout.h5.tst ) FOREACH (h5_file ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES}) @@ -105,6 +108,37 @@ ############################################################################## ############################################################################## + MACRO (ADD_HELP_TEST testname resultcode) + # If using memchecker add tests without using scripts + IF (HDF5_ENABLE_USING_MEMCHECKER) + ADD_TEST (NAME H5REPACK-${testname} COMMAND $<TARGET_FILE:h5repack> ${ARGN}) + SET_TESTS_PROPERTIES (H5REPACK-${testname} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + IF (NOT "${last_test}" STREQUAL "") + SET_TESTS_PROPERTIES (H5REPACK-${testname} PROPERTIES DEPENDS ${last_test}) + ENDIF (NOT "${last_test}" STREQUAL "") + SET (last_test "H5REPACK-${testname}") + ELSE (HDF5_ENABLE_USING_MEMCHECKER) + ADD_TEST ( + NAME H5REPACK-h5repack-${testname}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove h5repack-${testname}.out h5repack-${testname}.out.err + ) + SET_TESTS_PROPERTIES (H5REPACK-h5repack-${testname}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + ADD_TEST ( + NAME H5REPACK-h5repack-${testname} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5repack>" + -D "TEST_ARGS:STRING=${ARGN}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=h5repack-${testname}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=h5repack-${testname}.txt" + -P "${HDF5_RESOURCES_DIR}/runTest.cmake" + ) + SET_TESTS_PROPERTIES (H5REPACK-h5repack-${testname} PROPERTIES DEPENDS "H5REPACK-h5repack-${testname}-clear-objects") + ENDIF (HDF5_ENABLE_USING_MEMCHECKER) + ENDMACRO (ADD_HELP_TEST) + MACRO (ADD_H5_TEST_OLD testname testtype testfile) IF (${testtype} STREQUAL "SKIP") IF (NOT HDF5_ENABLE_USING_MEMCHECKER) @@ -177,7 +211,7 @@ -D "TEST_OUTPUT=./testfiles/${resultfile}-${testname}.out" -D "TEST_EXPECT=${resultcode}" -D "TEST_FILTER:STRING=${testfilter}" - -D "TEST_REFERENCE=testfiles/${resultfile}.ddl" + -D "TEST_REFERENCE=testfiles/${resultfile}.tst" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) ENDIF (HDF5_ENABLE_USING_MEMCHECKER) @@ -212,7 +246,7 @@ -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" -D "TEST_OUTPUT=./testfiles/${resultfile}-${testname}.out" -D "TEST_EXPECT=${resultcode}" - -D "TEST_REFERENCE=testfiles/${resultfile}.ddl" + -D "TEST_REFERENCE=testfiles/${testname}.${resultfile}.ddl" -P "${HDF5_RESOURCES_DIR}/runTest.cmake" ) SET_TESTS_PROPERTIES (H5REPACK_DMP-h5dump-${testname} PROPERTIES DEPENDS "H5REPACK_DMP-${testname}") @@ -303,6 +337,51 @@ SET_TESTS_PROPERTIES (H5REPACK_META-${testname} PROPERTIES DEPENDS H5REPACK_META-${testname}_M) ENDMACRO (ADD_H5_TEST_META) + MACRO (ADD_H5_UD_TEST testname resultcode resultfile) + IF (HDF5_BUILD_TOOLS AND NOT HDF5_ENABLE_USING_MEMCHECKER) + # Remove any output file left over from previous test run + ADD_TEST ( + NAME H5REPACK_UD-clearall-objects + COMMAND ${CMAKE_COMMAND} + -E remove + testfiles/out-${testname}.${resultfile} + testfiles/${testname}.${resultfile}.out + testfiles/${testname}.${resultfile}.out.err + testfiles/${resultfile}-${testname}.out + testfiles/${resultfile}-${testname}.out.err + ) + ADD_TEST ( + NAME H5REPACK_UD-${testname} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5repack>" + -D "TEST_ARGS:STRING=${ARGN};${PROJECT_BINARY_DIR}/testfiles/${resultfile};${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_FILTER:STRING=O?...ing file[^\n]+\n" + -D "TEST_OUTPUT=./testfiles/${testname}.${resultfile}.out" + -D "TEST_REFERENCE=testfiles/${testname}.${resultfile}.tst" + -D "TEST_ENV_VAR=HDF5_PLUGIN_PATH" + -D "TEST_ENV_VALUE=${CMAKE_BINARY_DIR}/plugins" + -P "${HDF5_RESOURCES_DIR}/runTest.cmake" + ) + SET_TESTS_PROPERTIES (H5REPACK_UD-${testname} PROPERTIES DEPENDS H5REPACK_UD-clearall-objects) + ADD_TEST ( + NAME H5REPACK_UD-h5dump-${testname} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>" + -D "TEST_ARGS:STRING=-pH;testfiles/out-${testname}.${resultfile}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -D "TEST_OUTPUT=./testfiles/${resultfile}-${testname}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=testfiles/${resultfile}-${testname}.ddl" + -D "TEST_ENV_VAR=HDF5_PLUGIN_PATH" + -D "TEST_ENV_VALUE=${CMAKE_BINARY_DIR}/plugins" + -P "${HDF5_RESOURCES_DIR}/runTest.cmake" + ) + SET_TESTS_PROPERTIES (H5REPACK_UD-h5dump-${testname} PROPERTIES DEPENDS "H5REPACK_UD-${testname}") + ENDIF (HDF5_BUILD_TOOLS AND NOT HDF5_ENABLE_USING_MEMCHECKER) + ENDMACRO (ADD_H5_UD_TEST) + ############################################################################## ############################################################################## ### T H E T E S T S ### @@ -333,12 +412,13 @@ SET (FILE18 h5repack_layout2.h5) SET (FILE_REF h5repack_refs.h5) SET (FILE_ATTR_REF h5repack_attr_refs.h5) - + # Remove any output file left over from previous test run ADD_TEST ( NAME H5REPACK-clearall-objects COMMAND ${CMAKE_COMMAND} -E remove + ./testfiles/h5dump-help.out ./testfiles/h5repack_filters.h5-gzip_verbose_filters.out ./testfiles/h5repack_filters.h5-gzip_verbose_filters.out.err ./testfiles/h5repack_layout.h5-chunk_18x13-v.out @@ -353,6 +433,8 @@ ./testfiles/h5repack_layout.h5-compa-v.out.err ./testfiles/h5repack_layout.h5-conti-v.out ./testfiles/h5repack_layout.h5-conti-v.out.err + ./testfiles/h5repack_layout.h5-deflate_limit.out + ./testfiles/h5repack_layout.h5-deflate_limit.out.err ./testfiles/h5repack_layout.h5-dset2_chunk_20x10-v.out ./testfiles/h5repack_layout.h5-dset2_chunk_20x10-v.out.err ./testfiles/h5repack_layout.h5-dset2_compa-v.out @@ -375,10 +457,16 @@ ./testfiles/h5repack_layout.h5-layout_long_switches-v.out.err ./testfiles/h5repack_layout.h5-layout_short_switches-v.out ./testfiles/h5repack_layout.h5-layout_short_switches-v.out.err + ./testfiles/h5repack_layout.h5-plugin_test.out + ./testfiles/h5repack_layout.h5-plugin_test.out.err ./testfiles/h5repack_layout2.h5-contig_small_compa-v.out ./testfiles/h5repack_layout2.h5-contig_small_compa-v.out.err ./testfiles/h5repack_layout2.h5-contig_small_fixed_compa-v.out ./testfiles/h5repack_layout2.h5-contig_small_fixed_compa-v.out.err + ./testfiles/h5repack_layout3.h5-ckdim_biger-v.out + ./testfiles/h5repack_layout3.h5-ckdim_biger-v.out.err + ./testfiles/h5repack_layout3.h5-ckdim_smaller-v.out + ./testfiles/h5repack_layout3.h5-ckdim_smaller-v.out.err ./testfiles/h5repack_layout3.h5-chunk2chunk-v.out ./testfiles/h5repack_layout3.h5-chunk2chunk-v.out.err ./testfiles/h5repack_layout3.h5-chunk2compa-v.out @@ -431,11 +519,14 @@ ./testfiles/out-layout_long_switches.h5repack_layout.h5 ./testfiles/out-layout_short_switches.h5repack_layout.h5 ./testfiles/out-old_style_layout_short_switches.h5repack_layout.h5 + ./testfiles/out-plugin_test.h5repack_layout.h5 ./testfiles/out-shuffle_all.h5repack_layout.h5 ./testfiles/out-shuffle_individual.h5repack_layout.h5 ./testfiles/out-upgrade_layout.h5repack_layouto.h5 ./testfiles/out-contig_small_compa.h5repack_layout2.h5 ./testfiles/out-contig_small_fixed_compa.h5repack_layout2.h5 + ./testfiles/out-ckdim_biger.h5repack_layout3.h5 + ./testfiles/out-ckdim_smaller.h5repack_layout3.h5 ./testfiles/out-chunk2chunk.h5repack_layout3.h5 ./testfiles/out-chunk2compa.h5repack_layout3.h5 ./testfiles/out-chunk2conti.h5repack_layout3.h5 @@ -507,6 +598,8 @@ SET_TESTS_PROPERTIES (H5REPACK-clearall-objects PROPERTIES DEPENDS ${last_test}) ENDIF (NOT "${last_test}" STREQUAL "") + ADD_HELP_TEST(help 0 -h) + ADD_TEST (NAME H5REPACK-testh5repack_detect_szip COMMAND $<TARGET_FILE:testh5repack_detect_szip>) IF (HDF5_ENABLE_SZIP_SUPPORT) IF (HDF5_ENABLE_SZIP_ENCODING) @@ -965,6 +1058,19 @@ ADD_H5_VERIFY_TEST (ckdim_smaller "TEST" 0 h5repack_layout3.h5 chunk_unlimit3 CO ADD_H5_TEST_META (meta_short h5repack_layout.h5 -M 8192) ADD_H5_TEST_META (meta_long h5repack_layout.h5 --metadata_block_size=8192) +############################################################################## +### P L U G I N T E S T S +############################################################################## +IF (BUILD_SHARED_LIBS) + ADD_H5_UD_TEST (plugin_test 0 h5repack_layout.h5 -v -f UD=257,1,9) +ELSE (BUILD_SHARED_LIBS) + MESSAGE (STATUS " **** Plugins libraries must be built as shared libraries **** ") + ADD_TEST ( + NAME H5REPACK-plugin + COMMAND ${CMAKE_COMMAND} -E echo "SKIP H5PLUGIN TESTING" + ) +ENDIF (BUILD_SHARED_LIBS) + IF (HDF5_TEST_VFD) # Run test with different Virtual File Driver FOREACH (vfd ${VFD_LIST}) diff --git a/tools/h5repack/Makefile.am b/tools/h5repack/Makefile.am index 96f0082..c52112b 100644 --- a/tools/h5repack/Makefile.am +++ b/tools/h5repack/Makefile.am @@ -28,11 +28,14 @@ TEST_SCRIPT=h5repack.sh TEST_PROG=h5repacktst noinst_PROGRAMS=testh5repack_detect_szip +SCRIPT_DEPEND=h5repack$(EXEEXT) +if HAVE_SHARED_CONDITIONAL + TEST_SCRIPT += h5repack_plugin.sh +endif + check_SCRIPTS=$(TEST_SCRIPT) check_PROGRAMS=$(TEST_PROG) -SCRIPT_DEPEND=h5repack$(EXEEXT) - # Our main target, h5repack tool bin_PROGRAMS=h5repack @@ -56,9 +59,18 @@ testh5repack_detect_szip_SOURCES=testh5repack_detect_szip.c # The h5repack.sh script needs h5repacktst to run first. h5repack.sh.chkexe_: h5repacktst.chkexe_ +if HAVE_SHARED_CONDITIONAL + # Build it as shared library if configure is enabled for shared library. + lib_LTLIBRARIES=libdynlibadd.la + libdynlibadd_la_SOURCES=$(top_srcdir)/test/dynlib1.c + +install-exec-hook: + $(RM) $(DESTDIR)$(libdir)/*dynlib* +endif + # Temporary files. *.h5 are generated by h5repack. They should # copied to the testfiles/ directory if update is required. CHECK_CLEANFILES+=*.h5 *.bin -DISTCLEANFILES=h5repack.sh +DISTCLEANFILES=h5repack.sh h5repack_plugin.sh include $(top_srcdir)/config/conclude.am diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in index fe3a11c..1b87fd6 100644 --- a/tools/h5repack/Makefile.in +++ b/tools/h5repack/Makefile.in @@ -31,6 +31,7 @@ # HDF5 Library Makefile(.in) # + VPATH = @srcdir@ am__make_dryrun = \ { \ @@ -68,11 +69,12 @@ POST_UNINSTALL = : build_triplet = @build@ host_triplet = @host@ DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ - $(srcdir)/h5repack.sh.in $(top_srcdir)/bin/depcomp \ - $(top_srcdir)/bin/mkinstalldirs \ + $(srcdir)/h5repack.sh.in $(srcdir)/h5repack_plugin.sh.in \ + $(top_srcdir)/bin/depcomp $(top_srcdir)/bin/mkinstalldirs \ $(top_srcdir)/config/commence.am \ $(top_srcdir)/config/conclude.am noinst_PROGRAMS = testh5repack_detect_szip$(EXEEXT) +@HAVE_SHARED_CONDITIONAL_TRUE@am__append_1 = h5repack_plugin.sh check_PROGRAMS = $(am__EXEEXT_1) bin_PROGRAMS = h5repack$(EXEEXT) TESTS = $(am__EXEEXT_1) $(TEST_SCRIPT) @@ -83,9 +85,47 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h -CONFIG_CLEAN_FILES = h5repack.sh +CONFIG_CLEAN_FILES = h5repack.sh h5repack_plugin.sh CONFIG_CLEAN_VPATH_FILES = -am__installdirs = "$(DESTDIR)$(bindir)" +am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; +am__vpath_adj = case $$p in \ + $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \ + *) f=$$p;; \ + esac; +am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`; +am__install_max = 40 +am__nobase_strip_setup = \ + srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'` +am__nobase_strip = \ + for p in $$list; do echo "$$p"; done | sed -e "s|$$srcdirstrip/||" +am__nobase_list = $(am__nobase_strip_setup); \ + for p in $$list; do echo "$$p $$p"; done | \ + sed "s| $$srcdirstrip/| |;"' / .*\//!s/ .*/ ./; s,\( .*\)/[^/]*$$,\1,' | \ + $(AWK) 'BEGIN { files["."] = "" } { files[$$2] = files[$$2] " " $$1; \ + if (++n[$$2] == $(am__install_max)) \ + { print $$2, files[$$2]; n[$$2] = 0; files[$$2] = "" } } \ + END { for (dir in files) print dir, files[dir] }' +am__base_list = \ + sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \ + sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g' +am__uninstall_files_from_dir = { \ + test -z "$$files" \ + || { test ! -d "$$dir" && test ! -f "$$dir" && test ! -r "$$dir"; } \ + || { echo " ( cd '$$dir' && rm -f" $$files ")"; \ + $(am__cd) "$$dir" && rm -f $$files; }; \ + } +am__installdirs = "$(DESTDIR)$(libdir)" "$(DESTDIR)$(bindir)" +LTLIBRARIES = $(lib_LTLIBRARIES) +libdynlibadd_la_LIBADD = +am__libdynlibadd_la_SOURCES_DIST = $(top_srcdir)/test/dynlib1.c +@HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlibadd_la_OBJECTS = dynlib1.lo +libdynlibadd_la_OBJECTS = $(am_libdynlibadd_la_OBJECTS) +AM_V_lt = $(am__v_lt_@AM_V@) +am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) +am__v_lt_0 = --silent +am__v_lt_1 = +@HAVE_SHARED_CONDITIONAL_TRUE@am_libdynlibadd_la_rpath = -rpath \ +@HAVE_SHARED_CONDITIONAL_TRUE@ $(libdir) am__EXEEXT_1 = h5repacktst$(EXEEXT) PROGRAMS = $(bin_PROGRAMS) $(noinst_PROGRAMS) am__objects_1 = h5repack.$(OBJEXT) h5repack_copy.$(OBJEXT) \ @@ -96,10 +136,6 @@ am_h5repack_OBJECTS = $(am__objects_1) h5repack_main.$(OBJEXT) h5repack_OBJECTS = $(am_h5repack_OBJECTS) h5repack_LDADD = $(LDADD) h5repack_DEPENDENCIES = $(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5) -AM_V_lt = $(am__v_lt_@AM_V@) -am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@) -am__v_lt_0 = --silent -am__v_lt_1 = h5repack_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \ $(LIBTOOLFLAGS) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ $(h5repack_LDFLAGS) $(LDFLAGS) -o $@ @@ -148,10 +184,10 @@ AM_V_CCLD = $(am__v_CCLD_@AM_V@) am__v_CCLD_ = $(am__v_CCLD_@AM_DEFAULT_V@) am__v_CCLD_0 = @echo " CCLD " $@; am__v_CCLD_1 = -SOURCES = $(h5repack_SOURCES) $(h5repacktst_SOURCES) \ - $(testh5repack_detect_szip_SOURCES) -DIST_SOURCES = $(h5repack_SOURCES) $(h5repacktst_SOURCES) \ - $(testh5repack_detect_szip_SOURCES) +SOURCES = $(libdynlibadd_la_SOURCES) $(h5repack_SOURCES) \ + $(h5repacktst_SOURCES) $(testh5repack_detect_szip_SOURCES) +DIST_SOURCES = $(am__libdynlibadd_la_SOURCES_DIST) $(h5repack_SOURCES) \ + $(h5repacktst_SOURCES) $(testh5repack_detect_szip_SOURCES) am__can_run_installinfo = \ case $$AM_UPDATE_INFO_DIR in \ n|no|NO) false;; \ @@ -450,10 +486,10 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 *.bin INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/test -I$(top_srcdir)/tools/lib # Test programs and scripts -TEST_SCRIPT = h5repack.sh +TEST_SCRIPT = h5repack.sh $(am__append_1) TEST_PROG = h5repacktst -check_SCRIPTS = $(TEST_SCRIPT) SCRIPT_DEPEND = h5repack$(EXEEXT) +check_SCRIPTS = $(TEST_SCRIPT) # Add h5repack specific linker flags here h5repack_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS) @@ -469,6 +505,8 @@ COMMON_SOURCES = h5repack.c h5repack_copy.c h5repack_filters.c \ h5repack_SOURCES = $(COMMON_SOURCES) h5repack_main.c h5repacktst_SOURCES = $(COMMON_SOURCES) h5repacktst.c testh5repack_detect_szip_SOURCES = testh5repack_detect_szip.c +@HAVE_SHARED_CONDITIONAL_TRUE@lib_LTLIBRARIES = libdynlibadd.la +@HAVE_SHARED_CONDITIONAL_TRUE@libdynlibadd_la_SOURCES = $(top_srcdir)/test/dynlib1.c DISTCLEANFILES = h5repack.sh # Automake needs to be taught how to build lib, progs, and tests targets. @@ -527,6 +565,44 @@ $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) $(am__aclocal_m4_deps): h5repack.sh: $(top_builddir)/config.status $(srcdir)/h5repack.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ +h5repack_plugin.sh: $(top_builddir)/config.status $(srcdir)/h5repack_plugin.sh.in + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ +install-libLTLIBRARIES: $(lib_LTLIBRARIES) + @$(NORMAL_INSTALL) + @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ + list2=; for p in $$list; do \ + if test -f $$p; then \ + list2="$$list2 $$p"; \ + else :; fi; \ + done; \ + test -z "$$list2" || { \ + echo " $(MKDIR_P) '$(DESTDIR)$(libdir)'"; \ + $(MKDIR_P) "$(DESTDIR)$(libdir)" || exit 1; \ + echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 '$(DESTDIR)$(libdir)'"; \ + $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL) $(INSTALL_STRIP_FLAG) $$list2 "$(DESTDIR)$(libdir)"; \ + } + +uninstall-libLTLIBRARIES: + @$(NORMAL_UNINSTALL) + @list='$(lib_LTLIBRARIES)'; test -n "$(libdir)" || list=; \ + for p in $$list; do \ + $(am__strip_dir) \ + echo " $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f '$(DESTDIR)$(libdir)/$$f'"; \ + $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=uninstall rm -f "$(DESTDIR)$(libdir)/$$f"; \ + done + +clean-libLTLIBRARIES: + -test -z "$(lib_LTLIBRARIES)" || rm -f $(lib_LTLIBRARIES) + @list='$(lib_LTLIBRARIES)'; \ + locs=`for p in $$list; do echo $$p; done | \ + sed 's|^[^/]*$$|.|; s|/[^/]*$$||; s|$$|/so_locations|' | \ + sort -u`; \ + test -z "$$locs" || { \ + echo rm -f $${locs}; \ + rm -f $${locs}; \ + } +libdynlibadd.la: $(libdynlibadd_la_OBJECTS) $(libdynlibadd_la_DEPENDENCIES) $(EXTRA_libdynlibadd_la_DEPENDENCIES) + $(AM_V_CCLD)$(LINK) $(am_libdynlibadd_la_rpath) $(libdynlibadd_la_OBJECTS) $(libdynlibadd_la_LIBADD) $(LIBS) install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ @@ -607,6 +683,7 @@ mostlyclean-compile: distclean-compile: -rm -f *.tab.c +@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/dynlib1.Plo@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repack.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repack_copy.Po@am__quote@ @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5repack_filters.Po@am__quote@ @@ -639,6 +716,13 @@ distclean-compile: @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $< +dynlib1.lo: $(top_srcdir)/test/dynlib1.c +@am__fastdepCC_TRUE@ $(AM_V_CC)$(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -MT dynlib1.lo -MD -MP -MF $(DEPDIR)/dynlib1.Tpo -c -o dynlib1.lo `test -f '$(top_srcdir)/test/dynlib1.c' || echo '$(srcdir)/'`$(top_srcdir)/test/dynlib1.c +@am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/dynlib1.Tpo $(DEPDIR)/dynlib1.Plo +@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='$(top_srcdir)/test/dynlib1.c' object='dynlib1.lo' libtool=yes @AMDEPBACKSLASH@ +@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ +@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) -c -o dynlib1.lo `test -f '$(top_srcdir)/test/dynlib1.c' || echo '$(srcdir)/'`$(top_srcdir)/test/dynlib1.c + mostlyclean-libtool: -rm -f *.lo @@ -745,9 +829,11 @@ check-am: all-am $(MAKE) $(AM_MAKEFLAGS) $(check_PROGRAMS) $(check_SCRIPTS) $(MAKE) $(AM_MAKEFLAGS) check-TESTS check: check-am -all-am: Makefile $(PROGRAMS) all-local +all-am: Makefile $(LTLIBRARIES) $(PROGRAMS) all-local +install-binPROGRAMS: install-libLTLIBRARIES + installdirs: - for dir in "$(DESTDIR)$(bindir)"; do \ + for dir in "$(DESTDIR)$(libdir)" "$(DESTDIR)$(bindir)"; do \ test -z "$$dir" || $(MKDIR_P) "$$dir"; \ done install: install-am @@ -781,10 +867,12 @@ distclean-generic: maintainer-clean-generic: @echo "This command is intended for maintainers to use" @echo "it deletes files that may require special tools to rebuild." +@HAVE_SHARED_CONDITIONAL_FALSE@install-exec-hook: clean: clean-am clean-am: clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool clean-noinstPROGRAMS mostlyclean-am + clean-libLTLIBRARIES clean-libtool clean-noinstPROGRAMS \ + mostlyclean-am distclean: distclean-am -rm -rf ./$(DEPDIR) @@ -810,8 +898,9 @@ install-dvi: install-dvi-am install-dvi-am: -install-exec-am: install-binPROGRAMS - +install-exec-am: install-binPROGRAMS install-libLTLIBRARIES + @$(NORMAL_INSTALL) + $(MAKE) $(AM_MAKEFLAGS) install-exec-hook install-html: install-html-am install-html-am: @@ -850,25 +939,26 @@ ps: ps-am ps-am: -uninstall-am: uninstall-binPROGRAMS +uninstall-am: uninstall-binPROGRAMS uninstall-libLTLIBRARIES -.MAKE: check-am install-am install-strip +.MAKE: check-am install-am install-exec-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ - clean-libtool clean-noinstPROGRAMS cscopelist ctags distclean \ - distclean-compile distclean-generic distclean-libtool \ - distclean-tags distdir dvi dvi-am html html-am info info-am \ - install install-am install-binPROGRAMS install-data \ - install-data-am install-dvi install-dvi-am install-exec \ - install-exec-am install-html install-html-am install-info \ - install-info-am install-man install-pdf install-pdf-am \ + clean-libLTLIBRARIES clean-libtool clean-noinstPROGRAMS \ + cscopelist ctags distclean distclean-compile distclean-generic \ + distclean-libtool distclean-tags distdir dvi dvi-am html \ + html-am info info-am install install-am install-binPROGRAMS \ + install-data install-data-am install-dvi install-dvi-am \ + install-exec install-exec-am install-exec-hook install-html \ + install-html-am install-info install-info-am \ + install-libLTLIBRARIES install-man install-pdf install-pdf-am \ install-ps install-ps-am install-strip installcheck \ installcheck-am installdirs maintainer-clean \ maintainer-clean-generic mostlyclean mostlyclean-compile \ mostlyclean-generic mostlyclean-libtool mostlyclean-local pdf \ pdf-am ps ps-am tags uninstall uninstall-am \ - uninstall-binPROGRAMS + uninstall-binPROGRAMS uninstall-libLTLIBRARIES # List all build rules defined by HDF5 Makefiles as "PHONY" targets here. @@ -885,6 +975,11 @@ help: # The h5repack.sh script needs h5repacktst to run first. h5repack.sh.chkexe_: h5repacktst.chkexe_ +@HAVE_SHARED_CONDITIONAL_TRUE@ # Build it as shared library if configure is enabled for shared library. + +@HAVE_SHARED_CONDITIONAL_TRUE@install-exec-hook: +@HAVE_SHARED_CONDITIONAL_TRUE@ $(RM) $(DESTDIR)$(libdir)/*dynlib* + # lib/progs/tests targets recurse into subdirectories. build-* targets # build files in this directory. build-lib: $(LIB) diff --git a/tools/h5repack/h5repack.c b/tools/h5repack/h5repack.c index d6437cf..5c44e1a 100644 --- a/tools/h5repack/h5repack.c +++ b/tools/h5repack/h5repack.c @@ -722,6 +722,7 @@ static int check_options(pack_opt_t *options) options->filter_g[k].cd_values[0]); break; default: + printf(" User Defined %d\n", filtn); break; } /* k */ }; @@ -1006,9 +1007,7 @@ static const char* get_sfilter(H5Z_filter_t filtn) return "NBIT"; else if (filtn==H5Z_FILTER_SCALEOFFSET) return "SOFF"; - else { - error_msg("input error in filter type\n"); - HDexit(EXIT_FAILURE); - } + else + return "UD"; } diff --git a/tools/h5repack/h5repack.sh.in b/tools/h5repack/h5repack.sh.in index 42b8ecb..583b6ef 100644 --- a/tools/h5repack/h5repack.sh.in +++ b/tools/h5repack/h5repack.sh.in @@ -117,11 +117,15 @@ $SRC_TOOLS_TESTFILES/tfamily00010.h5 " LIST_OTHER_TEST_FILES=" +$SRC_H5REPACK_TESTFILES/h5repack-help.txt $SRC_H5REPACK_TESTFILES/h5repack_ext.bin $SRC_H5REPACK_TESTFILES/ublock.bin $SRC_H5REPACK_TESTFILES/h5repack.info +$SRC_H5REPACK_TESTFILES/deflate_limit.h5repack_layout.h5.ddl $SRC_H5REPACK_TESTFILES/h5repack_layout.h5.ddl -$SRC_TOOLS_TESTFILES/h5repack_filters.h5.ddl +$SRC_H5REPACK_TESTFILES/h5repack_filters.h5.tst +$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-plugin_test.ddl +$SRC_H5REPACK_TESTFILES/plugin_test.h5repack_layout.h5.tst " # @@ -436,7 +440,7 @@ TOOLTEST1() # TOOLTESTV() { - expect="$TESTDIR/$2.ddl" + expect="$TESTDIR/$2.tst" actual="$TESTDIR/`basename $2 .ddl`.out" actual_err="$TESTDIR/`basename $2 .ddl`.err" @@ -468,7 +472,7 @@ TOOLTESTV() echo " PASSED" else echo "*FAILED*" - echo " Expected result (*.ddl) differs from actual result (*.out)" + echo " Expected result (*.tst) differs from actual result (*.out)" nerrors="`expr $nerrors + 1`" test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /' fi @@ -484,7 +488,7 @@ TOOLTEST_DUMP() { infile=$TESTDIR/$2 outfile=$TESTDIR/out-$1.$2 - expect="$TESTDIR/$2.ddl" + expect="$TESTDIR/$1.$2.ddl" actual="$TESTDIR/out-$1.$2.out" actual_err="$TESTDIR/out-$1.$2.err" @@ -592,6 +596,40 @@ TOOLTEST_META() rm -f $outfile } +# ADD_HELP_TEST +TOOLTEST_HELP() { + + expect="$TESTDIR/$1" + actual="$TESTDIR/`basename $1 .txt`.out" + actual_err="$TESTDIR/`basename $1 .txt`.err" + shift + + # Run test. + TESTING $H5REPACK $@ + ( + cd $TESTDIR + $RUNSERIAL $H5REPACK_BIN "$@" + ) >$actual 2>$actual_err + cat $actual_err >> $actual + + if [ ! -f $expect ]; then + # Create the expect data file if it doesn't yet exist. + echo " CREATED" + cp $actual $expect-CREATED + elif cmp -s $expect $actual; then + echo " PASSED" + else + echo "*FAILED*" + echo " Expected output (*.txt) differs from actual output (*.out)" + nerrors="`expr $nerrors + 1`" + fi + + # Clean up output file + if test -z "$HDF5_NOCLEANUP"; then + rm -f $actual $actual_err + fi + +} # This is different from $srcdir/../../bin/output_filter.sh STDOUT_FILTER() { @@ -630,6 +668,8 @@ fi # prepare for test COPY_TESTFILES_TO_TESTDIR +TOOLTEST_HELP h5repack-help.txt -h + # copy files (these files have no filters) TOOLTEST fill h5repack_fill.h5 TOOLTEST objs h5repack_objs.h5 diff --git a/tools/h5repack/h5repack_copy.c b/tools/h5repack/h5repack_copy.c index 02337fd..2133b48 100644 --- a/tools/h5repack/h5repack_copy.c +++ b/tools/h5repack/h5repack_copy.c @@ -1273,7 +1273,6 @@ int do_copy_objects(hid_t fidin, */ if (copy_attr(dset_in, dset_out, &named_dt_head, travt, options) < 0) goto error; - /*close */ if (H5Dclose(dset_out) < 0) goto error; @@ -1356,7 +1355,6 @@ int do_copy_objects(hid_t fidin, } /* end do we have request for filter/chunking */ - break; /*------------------------------------------------------------------------- @@ -1504,7 +1502,9 @@ static void print_dataset_info(hid_t dcpl_id, cd_values, sizeof(f_objname), f_objname, NULL); switch(filtn) { - default: + + case H5Z_FILTER_NONE: + HDstrcat(strfilter,"NONE "); break; case H5Z_FILTER_DEFLATE: @@ -1554,6 +1554,10 @@ static void print_dataset_info(hid_t dcpl_id, case H5Z_FILTER_SCALEOFFSET: HDstrcat(strfilter,"SCALEOFFSET "); break; + + default: + HDstrcat(strfilter,"UD "); + break; } /* switch */ }/*i*/ diff --git a/tools/h5repack/h5repack_filters.c b/tools/h5repack/h5repack_filters.c index 6c7bc65..56e08ef 100644 --- a/tools/h5repack/h5repack_filters.c +++ b/tools/h5repack/h5repack_filters.c @@ -345,8 +345,13 @@ int apply_filters(const char* name, /* object name from traverse list */ { switch (obj.filter[i].filtn) { - default: - break; + + /*------------------------------------------------------------------------- + * H5Z_FILTER_NONE 0 , uncompress if compressed + *------------------------------------------------------------------------- + */ + case H5Z_FILTER_NONE: + break; /*------------------------------------------------------------------------- * H5Z_FILTER_DEFLATE 1 , deflation like gzip @@ -436,6 +441,14 @@ int apply_filters(const char* name, /* object name from traverse list */ return -1; } break; + default: + { + if (H5Pset_filter (dcpl_id, obj.filter[i].filtn, H5Z_FLAG_MANDATORY, obj.filter[i].cd_nelmts, obj.filter[i].cd_values)<0) + return -1; + if(H5Pset_chunk(dcpl_id, obj.chunk.rank, obj.chunk.chunk_lengths)<0) + return -1; + } + break; } /* switch */ }/*i*/ diff --git a/tools/h5repack/h5repack_main.c b/tools/h5repack/h5repack_main.c index ff38068..b5f9d31 100644 --- a/tools/h5repack/h5repack_main.c +++ b/tools/h5repack/h5repack_main.c @@ -219,6 +219,7 @@ static void usage(const char *prog) printf(" FLET, to apply the HDF5 checksum filter\n"); printf(" NBIT, to apply the HDF5 NBIT filter (NBIT compression)\n"); printf(" SOFF, to apply the HDF5 Scale/Offset filter\n"); + printf(" UD, to apply a user defined filter\n"); printf(" NONE, to remove all filters\n"); printf(" <filter parameters> is optional filter parameter information\n"); printf(" GZIP=<deflation level> from 1-9\n"); @@ -229,6 +230,9 @@ static void usage(const char *prog) printf(" NBIT (no parameter)\n"); printf(" SOFF=<scale_factor,scale_type> scale_factor is an integer and scale_type\n"); printf(" is either IN or DS\n"); + printf(" UD=<filter_number,cd_value_count,value_1[,value_2,...,value_N]>\n"); + printf(" required values for filter_number,cd_value_count,value_1\n"); + printf(" optional values for value_2 to value_N\n"); printf(" NONE (no parameter)\n"); printf("\n"); printf(" LAYT - is a string with the format:\n"); @@ -271,6 +275,10 @@ static void usage(const char *prog) printf("\n"); printf(" Add both filters SHUF and GZIP in this order to all datasets\n"); printf("\n"); + printf("6) h5repack -f UD=307,1,9 file1 file2 \n"); + printf("\n"); + printf(" Add bzip2 filter to all datasets\n"); + printf("\n"); } diff --git a/tools/h5repack/h5repack_parse.c b/tools/h5repack/h5repack_parse.c index 9f798e9..8a297a7 100644 --- a/tools/h5repack/h5repack_parse.c +++ b/tools/h5repack/h5repack_parse.c @@ -31,6 +31,7 @@ * FLET, to apply the HDF5 checksum filter * NBIT, to apply the HDF5 NBIT filter (NBIT compression) * SOFF, to apply the HDF5 scale+offset filter (compression) + * UD, to apply a User Defined filter k, m, n1[,…,nm] * NONE, to remove the filter * * Examples: @@ -51,402 +52,468 @@ obj_list_t* parse_filter(const char *str, pack_opt_t *options, int *is_glb) { - unsigned i, u; - char c; - size_t len=HDstrlen(str); - int j, m, n, k, l, end_obj=-1, no_param=0; - char sobj[MAX_NC_NAME]; - char scomp[10]; - char stype[5]; - char smask[3]; - obj_list_t* obj_list=NULL; - unsigned pixels_per_block; - - - /* initialize compression info */ - HDmemset(filt,0,sizeof(filter_info_t)); - *is_glb = 0; - - /* check for the end of object list and number of objects */ - for ( i = 0, n = 0; i < len; i++) - { - c = str[i]; - if ( c==':' ) - { - end_obj=i; - } - if ( c==',' ) - { - n++; - } - } - - if (end_obj==-1) /* missing : */ - { - /* apply to all objects */ - options->all_filter=1; - *is_glb = 1; - } - - n++; - obj_list = (obj_list_t*) HDmalloc(n*sizeof(obj_list_t)); - if (obj_list==NULL) - { - error_msg("could not allocate object list\n"); - return NULL; - } - *n_objs=n; - - /* get object list */ - for ( j = 0, k = 0, n = 0; j < end_obj; j++, k++) - { - c = str[j]; - sobj[k] = c; - if ( c==',' || j==end_obj-1) - { - if ( c==',') sobj[k]='\0'; else sobj[k+1]='\0'; - HDstrcpy(obj_list[n].obj,sobj); - HDmemset(sobj,0,sizeof(sobj)); - n++; - k=-1; - } - } - /* nothing after : */ - if (end_obj+1==(int)len) - { - if (obj_list) HDfree(obj_list); - error_msg("input Error: Invalid compression type in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - - - /* get filter additional parameters */ - m=0; - for ( i=end_obj+1, k=0, j=0; i<len; i++,k++) - { - c = str[i]; - scomp[k]=c; - if ( c=='=' || i==len-1) - { - if ( c=='=') /*one more parameter */ - { - scomp[k]='\0'; /*cut space */ - - /*------------------------------------------------------------------------- - * H5Z_FILTER_SZIP - * szip has the format SZIP=<pixels per block,coding> - * pixels per block is a even number in 2-32 and coding method is 'EC' or 'NN' - * example SZIP=8,NN - *------------------------------------------------------------------------- - */ - if (HDstrcmp(scomp,"SZIP")==0) - { - l=-1; /* mask index check */ - for ( m=0,u=i+1; u<len; u++,m++) - { - if (str[u]==',') - { - stype[m]='\0'; /* end digit of szip */ - l=0; /* start EC or NN search */ - u++; /* skip ',' */ - } - c = str[u]; - if (!isdigit(c) && l==-1){ - if (obj_list) HDfree(obj_list); - error_msg("compression parameter not digit in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - if (l==-1) - stype[m]=c; - else - { - smask[l]=c; - l++; - if (l==2) - { - smask[l]='\0'; - i=len-1; /* end */ - (*n_objs)--; /* we counted an extra ',' */ - if (HDstrcmp(smask,"NN")==0) - filt->cd_values[j++]=H5_SZIP_NN_OPTION_MASK; - else if (HDstrcmp(smask,"EC")==0) - filt->cd_values[j++]=H5_SZIP_EC_OPTION_MASK; - else - { - error_msg("szip mask must be 'NN' or 'EC' \n"); - HDexit(EXIT_FAILURE); - } - - - } - } - - } /* u */ - } /*if */ - - /*------------------------------------------------------------------------- - * H5Z_FILTER_SCALEOFFSET - * scaleoffset has the format SOFF=<scale_factor,scale_type> - * scale_type can be - * integer datatype, H5Z_SO_INT (IN) - * float datatype using D-scaling method, H5Z_SO_FLOAT_DSCALE (DS) - * float datatype using E-scaling method, H5Z_SO_FLOAT_ESCALE (ES) , not yet implemented - * for integer datatypes, scale_factor denotes Minimum Bits - * for float datatypes, scale_factor denotes decimal scale factor - * examples - * SOFF=31,IN - * SOFF=3,DF - *------------------------------------------------------------------------- - */ - - else if (HDstrcmp(scomp,"SOFF")==0) - { - l=-1; /* mask index check */ - for ( m=0,u=i+1; u<len; u++,m++) - { - if (str[u]==',') - { - stype[m]='\0'; /* end digit */ - l=0; /* start 'IN' , 'DS', or 'ES' search */ - u++; /* skip ',' */ - } - c = str[u]; - if (!isdigit(c) && l==-1){ - if (obj_list) HDfree(obj_list); - error_msg("compression parameter is not a digit in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - if (l==-1) - stype[m]=c; - else - { - smask[l]=c; - l++; - if (l==2) - { - smask[l]='\0'; - i=len-1; /* end */ - (*n_objs)--; /* we counted an extra ',' */ - if (HDstrcmp(smask,"IN")==0) - filt->cd_values[j++]=H5Z_SO_INT; - else if (HDstrcmp(smask,"DS")==H5Z_SO_FLOAT_DSCALE) - filt->cd_values[j++]=H5Z_SO_FLOAT_DSCALE; - else - { - error_msg("scale type must be 'IN' or 'DS' \n"); - HDexit(EXIT_FAILURE); - } - - } - } - - } /* u */ - } /*if */ - - - /*------------------------------------------------------------------------- - * all other filters - *------------------------------------------------------------------------- - */ - - else - { - /* here we could have 1 or 2 digits */ - for ( m=0,u=i+1; u<len; u++,m++) - { - c = str[u]; - if (!isdigit(c)){ - if (obj_list) HDfree(obj_list); - error_msg("compression parameter is not a digit in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - stype[m]=c; - } /* u */ - - stype[m]='\0'; - } /*if */ - - - - filt->cd_values[j++]=atoi(stype); - i+=m; /* jump */ - } - else if (i==len-1) - { /*no more parameters */ - scomp[k+1]='\0'; - no_param=1; - } - - /*------------------------------------------------------------------------- - * translate from string to filter symbol - *------------------------------------------------------------------------- - */ - - /*------------------------------------------------------------------------- - * H5Z_FILTER_NONE - *------------------------------------------------------------------------- - */ - if (HDstrcmp(scomp,"NONE")==0) - { - filt->filtn=H5Z_FILTER_NONE; - filt->cd_nelmts = 0; - } - - /*------------------------------------------------------------------------- - * H5Z_FILTER_DEFLATE - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"GZIP")==0) - { - filt->filtn=H5Z_FILTER_DEFLATE; - filt->cd_nelmts = 1; - if (no_param) - { /*no more parameters, GZIP must have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("missing compression parameter in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - } - - /*------------------------------------------------------------------------- - * H5Z_FILTER_SZIP - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"SZIP")==0) - { - filt->filtn=H5Z_FILTER_SZIP; - filt->cd_nelmts = 2; - if (no_param) - { /*no more parameters, SZIP must have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("missing compression parameter in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - } - - /*------------------------------------------------------------------------- - * H5Z_FILTER_SHUFFLE - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"SHUF")==0) - { - filt->filtn=H5Z_FILTER_SHUFFLE; - filt->cd_nelmts = 0; - if (m>0) - { /*shuffle does not have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("extra parameter in SHUF <%s>\n",str); - HDexit(EXIT_FAILURE); - } - } - /*------------------------------------------------------------------------- - * H5Z_FILTER_FLETCHER32 - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"FLET")==0) - { - filt->filtn=H5Z_FILTER_FLETCHER32; - filt->cd_nelmts = 0; - if (m>0) - { /*shuffle does not have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("extra parameter in FLET <%s>\n",str); - HDexit(EXIT_FAILURE); - } - } - /*------------------------------------------------------------------------- - * H5Z_FILTER_NBIT - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"NBIT")==0) - { - filt->filtn=H5Z_FILTER_NBIT; - filt->cd_nelmts = 0; - if (m>0) - { /*nbit does not have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("extra parameter in NBIT <%s>\n",str); - HDexit(EXIT_FAILURE); - } - } - /*------------------------------------------------------------------------- - * H5Z_FILTER_SCALEOFFSET - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"SOFF")==0) - { - filt->filtn=H5Z_FILTER_SCALEOFFSET; - filt->cd_nelmts = 2; - if (no_param) - { /*no more parameters, SOFF must have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("missing compression parameter in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - } - else { - if (obj_list) HDfree(obj_list); - error_msg("invalid filter type in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - } - } /*i*/ - - /*------------------------------------------------------------------------- - * check valid parameters - *------------------------------------------------------------------------- - */ - - switch (filt->filtn) - { - - /*------------------------------------------------------------------------- - * H5Z_FILTER_DEFLATE - *------------------------------------------------------------------------- - */ - - case H5Z_FILTER_DEFLATE: - if (filt->cd_values[0]>9 ) - { - if (obj_list) HDfree(obj_list); - error_msg("invalid compression parameter in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - break; - - /*------------------------------------------------------------------------- - * H5Z_FILTER_SZIP - *------------------------------------------------------------------------- - */ - - case H5Z_FILTER_SZIP: - pixels_per_block=filt->cd_values[0]; - if ((pixels_per_block%2)==1) - { - if (obj_list) HDfree(obj_list); - error_msg("pixels_per_block is not even in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - if (pixels_per_block>H5_SZIP_MAX_PIXELS_PER_BLOCK) - { - if (obj_list) HDfree(obj_list); - error_msg("pixels_per_block is too large in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - if ( (HDstrcmp(smask,"NN")!=0) && (HDstrcmp(smask,"EC")!=0) ) - { - if (obj_list) HDfree(obj_list); - error_msg("szip mask must be 'NN' or 'EC' \n"); - HDexit(EXIT_FAILURE); - } - break; - default: - break; - - - }; - - return obj_list; + unsigned i, u; + char c; + size_t len=HDstrlen(str); + int j, m, n, k, l, p, r, q, end_obj=-1, no_param=0; + char sobj[MAX_NC_NAME]; + char scomp[10]; + char stype[5]; + char smask[3]; + obj_list_t* obj_list=NULL; + unsigned pixels_per_block; + + + /* initialize compression info */ + HDmemset(filt,0,sizeof(filter_info_t)); + *is_glb = 0; + + /* check for the end of object list and number of objects */ + for ( i = 0, n = 0; i < len; i++) + { + c = str[i]; + if ( c==':' ) + { + end_obj=i; + } + if ( c==',' ) + { + n++; + } + } + + if (end_obj==-1) /* missing : */ + { + /* apply to all objects */ + options->all_filter=1; + *is_glb = 1; + } + + n++; + obj_list = (obj_list_t*) HDmalloc(n*sizeof(obj_list_t)); + if (obj_list==NULL) + { + error_msg("could not allocate object list\n"); + return NULL; + } + *n_objs=n; + + /* get object list */ + for ( j = 0, k = 0, n = 0; j < end_obj; j++, k++) + { + c = str[j]; + sobj[k] = c; + if ( c==',' || j==end_obj-1) + { + if ( c==',') sobj[k]='\0'; else sobj[k+1]='\0'; + HDstrcpy(obj_list[n].obj,sobj); + HDmemset(sobj,0,sizeof(sobj)); + n++; + k=-1; + } + } + /* nothing after : */ + if (end_obj+1==(int)len) + { + if (obj_list) HDfree(obj_list); + error_msg("input Error: Invalid compression type in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + + + /* get filter additional parameters */ + m=0; + for ( i=end_obj+1, k=0, j=0; i<len; i++,k++) + { + c = str[i]; + scomp[k]=c; + if ( c=='=' || i==len-1) + { + if ( c=='=') /*one more parameter */ + { + scomp[k]='\0'; /*cut space */ + + /*------------------------------------------------------------------------- + * H5Z_FILTER_SZIP + * szip has the format SZIP=<pixels per block,coding> + * pixels per block is a even number in 2-32 and coding method is 'EC' or 'NN' + * example SZIP=8,NN + *------------------------------------------------------------------------- + */ + if (HDstrcmp(scomp,"SZIP")==0) + { + l=-1; /* mask index check */ + for ( m=0,u=i+1; u<len; u++,m++) + { + if (str[u]==',') + { + stype[m]='\0'; /* end digit of szip */ + l=0; /* start EC or NN search */ + u++; /* skip ',' */ + } + c = str[u]; + if (!isdigit(c) && l==-1) + { + if (obj_list) HDfree(obj_list); + error_msg("compression parameter not digit in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + if (l==-1) + stype[m]=c; + else + { + smask[l]=c; + l++; + if (l==2) + { + smask[l]='\0'; + i=len-1; /* end */ + (*n_objs)--; /* we counted an extra ',' */ + if (HDstrcmp(smask,"NN")==0) + filt->cd_values[j++]=H5_SZIP_NN_OPTION_MASK; + else if (HDstrcmp(smask,"EC")==0) + filt->cd_values[j++]=H5_SZIP_EC_OPTION_MASK; + else + { + error_msg("szip mask must be 'NN' or 'EC' \n"); + HDexit(EXIT_FAILURE); + } + + + } + } + + } /* u */ + } /*if */ + + /*------------------------------------------------------------------------- + * H5Z_FILTER_SCALEOFFSET + * scaleoffset has the format SOFF=<scale_factor,scale_type> + * scale_type can be + * integer datatype, H5Z_SO_INT (IN) + * float datatype using D-scaling method, H5Z_SO_FLOAT_DSCALE (DS) + * float datatype using E-scaling method, H5Z_SO_FLOAT_ESCALE (ES) , not yet implemented + * for integer datatypes, scale_factor denotes Minimum Bits + * for float datatypes, scale_factor denotes decimal scale factor + * examples + * SOFF=31,IN + * SOFF=3,DF + *------------------------------------------------------------------------- + */ + + else if (HDstrcmp(scomp,"SOFF")==0) + { + l=-1; /* mask index check */ + for ( m=0,u=i+1; u<len; u++,m++) + { + if (str[u]==',') + { + stype[m]='\0'; /* end digit */ + l=0; /* start 'IN' , 'DS', or 'ES' search */ + u++; /* skip ',' */ + } + c = str[u]; + if (!isdigit(c) && l==-1) + { + if (obj_list) HDfree(obj_list); + error_msg("compression parameter is not a digit in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + if (l==-1) + stype[m]=c; + else + { + smask[l]=c; + l++; + if (l==2) + { + smask[l]='\0'; + i=len-1; /* end */ + (*n_objs)--; /* we counted an extra ',' */ + if (HDstrcmp(smask,"IN")==0) + filt->cd_values[j++]=H5Z_SO_INT; + else if (HDstrcmp(smask,"DS")==H5Z_SO_FLOAT_DSCALE) + filt->cd_values[j++]=H5Z_SO_FLOAT_DSCALE; + else + { + error_msg("scale type must be 'IN' or 'DS' \n"); + HDexit(EXIT_FAILURE); + } + + } + } + + } /* u */ + } /*if */ + /*------------------------------------------------------------------------- + * User Defined + * has the format UD=<filter_number,cd_value_count,value_1[,value_2,...,value_N]> + * BZIP2 example + * UD=307,1,9 + *------------------------------------------------------------------------- + */ + + else if (HDstrcmp(scomp,"UD")==0) + { + l=-1; /* filter number index check */ + p=-1; /* CD_VAL count check */ + r=-1; /* CD_VAL check */ + for ( m=0,q=0,u=i+1; u<len; u++,m++,q++) + { + if (str[u]==',') + { + stype[q]='\0'; /* end digit */ + if (l==-1) + { + filt->filtn=atoi(stype); + l=0; + } + else if (p==-1) + { + filt->cd_nelmts=atoi(stype); + p=0; + } + else + r=0; + q=0; + u++; /* skip ',' */ + } + c = str[u]; + if (!isdigit(c) && l==-1) + { + if (obj_list) HDfree(obj_list); + error_msg("filter number parameter is not a digit in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + stype[q]=c; + if (l==0 && p==0) + { + if (r==0) + filt->cd_values[j++]=atoi(stype); + } + + } /* u */ + + stype[q]='\0'; + } /*if */ + + + /*------------------------------------------------------------------------- + * all other filters + *------------------------------------------------------------------------- + */ + + else + { + /* here we could have 1 or 2 digits */ + for ( m=0,u=i+1; u<len; u++,m++) + { + c = str[u]; + if (!isdigit(c)){ + if (obj_list) HDfree(obj_list); + error_msg("compression parameter is not a digit in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + stype[m]=c; + } /* u */ + + stype[m]='\0'; + } /*if */ + + + + filt->cd_values[j++]=atoi(stype); + i+=m; /* jump */ + } + else if (i==len-1) + { /*no more parameters */ + scomp[k+1]='\0'; + no_param=1; + } + + /*------------------------------------------------------------------------- + * translate from string to filter symbol + *------------------------------------------------------------------------- + */ + + /*------------------------------------------------------------------------- + * H5Z_FILTER_NONE + *------------------------------------------------------------------------- + */ + if (HDstrcmp(scomp,"NONE")==0) + { + filt->filtn=H5Z_FILTER_NONE; + filt->cd_nelmts = 0; + } + + /*------------------------------------------------------------------------- + * H5Z_FILTER_DEFLATE + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp,"GZIP")==0) + { + filt->filtn=H5Z_FILTER_DEFLATE; + filt->cd_nelmts = 1; + if (no_param) + { /*no more parameters, GZIP must have parameter */ + if (obj_list) HDfree(obj_list); + error_msg("missing compression parameter in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + + /*------------------------------------------------------------------------- + * H5Z_FILTER_SZIP + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp,"SZIP")==0) + { + filt->filtn=H5Z_FILTER_SZIP; + filt->cd_nelmts = 2; + if (no_param) + { /*no more parameters, SZIP must have parameter */ + if (obj_list) HDfree(obj_list); + error_msg("missing compression parameter in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + + /*------------------------------------------------------------------------- + * H5Z_FILTER_SHUFFLE + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp,"SHUF")==0) + { + filt->filtn=H5Z_FILTER_SHUFFLE; + filt->cd_nelmts = 0; + if (m>0) + { /*shuffle does not have parameter */ + if (obj_list) HDfree(obj_list); + error_msg("extra parameter in SHUF <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + /*------------------------------------------------------------------------- + * H5Z_FILTER_FLETCHER32 + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp,"FLET")==0) + { + filt->filtn=H5Z_FILTER_FLETCHER32; + filt->cd_nelmts = 0; + if (m>0) + { /*shuffle does not have parameter */ + if (obj_list) HDfree(obj_list); + error_msg("extra parameter in FLET <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + /*------------------------------------------------------------------------- + * H5Z_FILTER_NBIT + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp,"NBIT")==0) + { + filt->filtn=H5Z_FILTER_NBIT; + filt->cd_nelmts = 0; + if (m>0) + { /*nbit does not have parameter */ + if (obj_list) HDfree(obj_list); + error_msg("extra parameter in NBIT <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + /*------------------------------------------------------------------------- + * H5Z_FILTER_SCALEOFFSET + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp,"SOFF")==0) + { + filt->filtn=H5Z_FILTER_SCALEOFFSET; + filt->cd_nelmts = 2; + if (no_param) + { /*no more parameters, SOFF must have parameter */ + if (obj_list) HDfree(obj_list); + error_msg("missing compression parameter in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + /*------------------------------------------------------------------------- + * User Defined Filter + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp,"UD")==0) + { + if (filt->cd_nelmts != j) + { /* parameters does not match count */ + if (obj_list) HDfree(obj_list); + error_msg("incorrect number of compression parameters in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + else { + if (obj_list) HDfree(obj_list); + error_msg("invalid filter type in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + } /*i*/ + + /*------------------------------------------------------------------------- + * check valid parameters + *------------------------------------------------------------------------- + */ + + switch (filt->filtn) + { + + /*------------------------------------------------------------------------- + * H5Z_FILTER_DEFLATE + *------------------------------------------------------------------------- + */ + + case H5Z_FILTER_DEFLATE: + if (filt->cd_values[0]>9 ) + { + if (obj_list) HDfree(obj_list); + error_msg("invalid compression parameter in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + break; + + /*------------------------------------------------------------------------- + * H5Z_FILTER_SZIP + *------------------------------------------------------------------------- + */ + + case H5Z_FILTER_SZIP: + pixels_per_block=filt->cd_values[0]; + if ((pixels_per_block%2)==1) + { + if (obj_list) HDfree(obj_list); + error_msg("pixels_per_block is not even in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + if (pixels_per_block>H5_SZIP_MAX_PIXELS_PER_BLOCK) + { + if (obj_list) HDfree(obj_list); + error_msg("pixels_per_block is too large in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + if ( (HDstrcmp(smask,"NN")!=0) && (HDstrcmp(smask,"EC")!=0) ) + { + if (obj_list) HDfree(obj_list); + error_msg("szip mask must be 'NN' or 'EC' \n"); + HDexit(EXIT_FAILURE); + } + break; + default: + break; + + + }; + + return obj_list; } diff --git a/tools/h5repack/h5repack_plugin.sh.in b/tools/h5repack/h5repack_plugin.sh.in new file mode 100644 index 0000000..a45d1fe --- /dev/null +++ b/tools/h5repack/h5repack_plugin.sh.in @@ -0,0 +1,238 @@ +#! /bin/sh +# +# Copyright by The HDF Group. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic document set and is +# linked from the top-level documents page. It can also be found at +# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have access +# to either file, you may request a copy from help@hdfgroup.org. +# +srcdir=@srcdir@ +TOP_BUILDDIR=@top_builddir@ + +# Determine backward compatibility options enabled +DEPRECATED_SYMBOLS="@DEPRECATED_SYMBOLS@" + +EXIT_SUCCESS=0 +EXIT_FAILURE=1 + +H5REPACK=h5repack # The tool name +H5REPACK_BIN=`pwd`/$H5REPACK # The path of the tool binary + +H5DUMP=../h5dump/h5dump # The h5dump tool name +H5DUMP_BIN=`pwd`/$H5DUMP # The path of the h5dump tool binary + +nerrors=0 +verbose=yes +exit_code=$EXIT_SUCCESS + +TEST_NAME=ud_plugin +FROM_DIR=`pwd`/.libs +PLUGIN_LIB="$FROM_DIR/libdynlibadd.*" +PLUGIN_LIBDIR=testdir3 +RM="rm -rf" + +GREP='grep' +CP='cp' +DIRNAME='dirname' +LS='ls' +AWK='awk' + +# source dirs +SRC_TOOLS="$srcdir/.." + +# testfiles source dirs for tools +SRC_H5REPACK_TESTFILES="$SRC_TOOLS/h5repack/testfiles" + +TESTDIR=testfiles +test -d $TESTDIR || mkdir $TESTDIR + +###################################################################### +# test files +# -------------------------------------------------------------------- +# All the test files copy from source directory to test directory +# NOTE: Keep this framework to add/remove test files. +# Any test files from other tools can be used in this framework. +# This list are also used for checking exist. +# Comment '#' without space can be used. +# -------------------------------------------------------------------- +LIST_HDF5_TEST_FILES=" +$SRC_H5REPACK_TESTFILES/h5repack_layout.h5 +$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-plugin_test.ddl +$SRC_H5REPACK_TESTFILES/plugin_test.h5repack_layout.h5.tst +" + +# +# copy test files and expected output files from source dirs to test dir +# +COPY_TESTFILES="$LIST_HDF5_TEST_FILES" + +# Main Body +# Create test directories if not exists yet. +test -d $PLUGIN_LIBDIR || mkdir -p $PLUGIN_LIBDIR +if [ $? != 0 ]; then + echo "Failed to create test directory($PLUGIN_LIBDIR)" + exit $EXIT_FAILURE +fi + +# copy plugin library for test +$CP $PLUGIN_LIB $PLUGIN_LIBDIR +if [ $? != 0 ]; then + echo "Failed to copy plugin library ($PLUGIN_LIB) for test." + exit $EXIT_FAILURE +fi + +# setup plugin path +ENVCMD="env HDF5_PLUGIN_PATH=${PLUGIN_LIBDIR}" + +COPY_TESTFILES_TO_TESTDIR() +{ + # copy test files. Used -f to make sure get a new copy + for tstfile in $COPY_TESTFILES + do + # ignore '#' comment + echo $tstfile | tr -d ' ' | grep '^#' > /dev/null + RET=$? + if [ $RET -eq 1 ]; then + # skip cp if srcdir is same as destdir + # this occurs when build/test performed in source dir and + # make cp fail + SDIR=`$DIRNAME $tstfile` + INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` + INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` + if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then + $CP -f $tstfile $TESTDIR + if [ $? -ne 0 ]; then + echo "Error: FAILED to copy $tstfile ." + + # Comment out this to CREATE expected file + exit $EXIT_FAILURE + fi + fi + fi + done +} + +# Print a $* message left justified in a field of 70 characters +# +MESSAGE() { + SPACES=" " + echo "$* $SPACES" | cut -c1-70 | tr -d '\012' +} + +# Print a line-line message left justified in a field of 70 characters +# beginning with the word "Testing". +# +TESTING() { + SPACES=" " + echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012' +} + +# Print a line-line message left justified in a field of 70 characters +# beginning with the word "Verifying". +# +VERIFY() { + MESSAGE "Verifying $*" +} + +# This is different from $srcdir/../../bin/output_filter.sh +STDOUT_FILTER() { + result_file=$1 + tmp_file=/tmp/h5test_tmp_$$ + # Filter name of files. + cp $result_file $tmp_file + sed -e '/^Opening file/d' -e '/^Making file/d' \ + < $tmp_file > $result_file + # cleanup + rm -f $tmp_file +} + +# This runs h5repack comparing output with h5dump output +# from -pH option +# +TOOLTEST_DUMP() +{ + echo $@ + infile=$TESTDIR/$2 + outfile=$TESTDIR/out-$1.$2 + expect1="$TESTDIR/$1.$2.tst" + actual1="$TESTDIR/$1.$2.out" + actual1_err="$TESTDIR/$1.$2.err" + expect2="$TESTDIR/$2-$1.ddl" + actual2="$TESTDIR/$2-$1.out" + actual2_err="$TESTDIR/$2-$1.err" + + shift + shift + + # Run test. + TESTING $H5REPACK $@ + ( + $ENVCMD $H5REPACK_BIN "$@" $infile $outfile + ) >$actual1 2>$actual1_err + RET=$? + STDOUT_FILTER $actual1 + cat $actual1_err >> $actual1 + if [ $RET != 0 ] ; then + echo "*FAILED*" + nerrors="`expr $nerrors + 1`" + else + echo " PASSED" + if cmp -s $expect1 $actual1; then + echo " PASSED" + else + echo "*FAILED*" + echo " Expected result (*.tst) differs from actual result (*.out)" + nerrors="`expr $nerrors + 1`" + test yes = "$verbose" && diff -c $expect1 $actual1 |sed 's/^/ /' + fi + VERIFY h5dump output -pH $outfile + ( + $ENVCMD $H5DUMP_BIN -pH $outfile + ) >$actual2 2>$actual2_err + RET=$? + cat $actual2_err >> $actual2 + + if cmp -s $expect2 $actual2; then + echo " PASSED" + else + echo "*FAILED*" + echo " Expected result (*.ddl) differs from actual result (*.out)" + nerrors="`expr $nerrors + 1`" + test yes = "$verbose" && diff -c $expect2 $actual2 |sed 's/^/ /' + fi + + fi + + + rm -f $actual1 $actual1_err $actual2 $actual2_err + rm -f $outfile +} + +############################################################################## +### T H E T E S T S +############################################################################## +# prepare for test +COPY_TESTFILES_TO_TESTDIR + +# Run the test +arg="h5repack_layout.h5 -v -f UD=257,1,9" +TOOLTEST_DUMP plugin_test $arg + +# print results +if test $nerrors -ne 0 ; then + echo "$nerrors errors encountered" + exit_code=$EXIT_FAILURE +else + echo "All Plugin API tests passed." + exit_code=$EXIT_SUCCESS +fi + +# Clean up temporary files/directories and leave +$RM $PLUGIN_LIBDIR +exit $exit_code diff --git a/tools/h5repack/h5repack_verify.c b/tools/h5repack/h5repack_verify.c index a57295b..42799f9 100644 --- a/tools/h5repack/h5repack_verify.c +++ b/tools/h5repack/h5repack_verify.c @@ -601,6 +601,9 @@ int verify_filters(hid_t pid, hid_t tid, int nfilters, filter_info_t *filter) switch (filtn) { + case H5Z_FILTER_NONE: + break; + case H5Z_FILTER_SHUFFLE: /* 1 private client value is returned by DCPL */ @@ -677,7 +680,17 @@ int verify_filters(hid_t pid, hid_t tid, int nfilters, filter_info_t *filter) break; default: - /* filter has no local values */ + if ( cd_nelmts != filter[i].cd_nelmts) + return 0; + + for( j = 0; j < cd_nelmts; j++) + { + if (cd_values[j] != filter[i].cd_values[j]) + { + return 0; + } + + } break; } /* switch */ diff --git a/tools/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl b/tools/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl new file mode 100644 index 0000000..d380201 --- /dev/null +++ b/tools/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl @@ -0,0 +1,130 @@ +HDF5 "./testfiles/out-deflate_limit.h5repack_layout.h5" { +GROUP "/" { + DATASET "dset1" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 1150 (2.783:1 COMPRESSION) + } + FILTERS { + COMPRESSION DEFLATE { LEVEL 1 } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE 0 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset2" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 1150 (2.783:1 COMPRESSION) + } + FILTERS { + COMPRESSION DEFLATE { LEVEL 1 } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE 0 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset3" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 1150 (2.783:1 COMPRESSION) + } + FILTERS { + COMPRESSION DEFLATE { LEVEL 1 } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE 0 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset4" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 1150 (2.783:1 COMPRESSION) + } + FILTERS { + COMPRESSION DEFLATE { LEVEL 1 } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE 0 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_chunk" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, H5S_UNLIMITED ) } + STORAGE_LAYOUT { + CHUNKED ( 20, 10 ) + SIZE 1283 (2.494:1 COMPRESSION) + } + FILTERS { + COMPRESSION DEFLATE { LEVEL 1 } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE 0 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_compact" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 1150 (2.783:1 COMPRESSION) + } + FILTERS { + COMPRESSION DEFLATE { LEVEL 1 } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE 0 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_contiguous" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 1150 (2.783:1 COMPRESSION) + } + FILTERS { + COMPRESSION DEFLATE { LEVEL 1 } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE 0 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } +} +} diff --git a/tools/h5repack/testfiles/h5repack-help.txt b/tools/h5repack/testfiles/h5repack-help.txt new file mode 100644 index 0000000..6de1eb4 --- /dev/null +++ b/tools/h5repack/testfiles/h5repack-help.txt @@ -0,0 +1,122 @@ +usage: h5repack [OPTIONS] file1 file2 + file1 Input HDF5 File + file2 Output HDF5 File + OPTIONS + -h, --help Print a usage message and exit + -v, --verbose Verbose mode, print object information + -V, --version Print version number and exit + -n, --native Use a native HDF5 type when repacking + -L, --latest Use latest version of file format + -c L1, --compact=L1 Maximum number of links in header messages + -d L2, --indexed=L2 Minimum number of links in the indexed format + -s S[:F], --ssize=S[:F] Shared object header message minimum size + -m M, --minimum=M Do not apply the filter to datasets smaller than M + -e E, --file=E Name of file E with the -f and -l options + -u U, --ublock=U Name of file U with user block data to be added + -b B, --block=B Size of user block to be added + -M A, --metadata_block_size=A Metadata block size for H5Pset_meta_block_size + -t T, --threshold=T Threshold value for H5Pset_alignment + -a A, --alignment=A Alignment value for H5Pset_alignment + -f FILT, --filter=FILT Filter type + -l LAYT, --layout=LAYT Layout type + -S FS_STRGY, --fs_strategy=FS_STRGY File space management strategy + -T FS_THRD, --fs_threshold=FS_THRD Free-space section threshold + + M - is an integer greater than 1, size of dataset in bytes (default is 0) + E - is a filename. + S - is an integer + U - is a filename. + T - is an integer + A - is an integer greater than zero + B - is the user block size, any value that is 512 or greater and is + a power of 2 (1024 default) + F - is the shared object header message type, any of <dspace|dtype|fill| + pline|attr>. If F is not specified, S applies to all messages + + FS_STRGY is the file space management strategy to use for the output file. + It is a string as listed below: + ALL_PERSIST - Use persistent free-space managers, aggregators and virtual file driver + for file space allocation + ALL - Use non-persistent free-space managers, aggregators and virtual file driver + for file space allocation + AGGR_VFD - Use aggregators and virtual file driver for file space allocation + VFD - Use virtual file driver for file space allocation + + FS_THRD is the free-space section threshold to use for the output file. + It is the minimum size (in bytes) of free-space sections to be tracked + by the the library's free-space managers. + + FILT - is a string with the format: + + <list of objects>:<name of filter>=<filter parameters> + + <list of objects> is a comma separated list of object names, meaning apply + compression only to those objects. If no names are specified, the filter + is applied to all objects + <name of filter> can be: + GZIP, to apply the HDF5 GZIP filter (GZIP compression) + SZIP, to apply the HDF5 SZIP filter (SZIP compression) + SHUF, to apply the HDF5 shuffle filter + FLET, to apply the HDF5 checksum filter + NBIT, to apply the HDF5 NBIT filter (NBIT compression) + SOFF, to apply the HDF5 Scale/Offset filter + UD, to apply a user defined filter + NONE, to remove all filters + <filter parameters> is optional filter parameter information + GZIP=<deflation level> from 1-9 + SZIP=<pixels per block,coding> pixels per block is a even number in + 2-32 and coding method is either EC or NN + SHUF (no parameter) + FLET (no parameter) + NBIT (no parameter) + SOFF=<scale_factor,scale_type> scale_factor is an integer and scale_type + is either IN or DS + UD=<filter_number,cd_value_count,value_1[,value_2,...,value_N]> + required values for filter_number,cd_value_count,value_1 + optional values for value_2 to value_N + NONE (no parameter) + + LAYT - is a string with the format: + + <list of objects>:<layout type>=<layout parameters> + + <list of objects> is a comma separated list of object names, meaning that + layout information is supplied for those objects. If no names are + specified, the layout type is applied to all objects + <layout type> can be: + CHUNK, to apply chunking layout + COMPA, to apply compact layout + CONTI, to apply contiguous layout + <layout parameters> is optional layout information + CHUNK=DIM[xDIM...xDIM], the chunk size of each dimension + COMPA (no parameter) + CONTI (no parameter) + +Examples of use: + +1) h5repack -v -f GZIP=1 file1 file2 + + GZIP compression with level 1 to all objects + +2) h5repack -v -f A:SZIP=8,NN file1 file2 + + SZIP compression with 8 pixels per block and NN coding method to object A + +3) h5repack -v -l A,B:CHUNK=20x10 -f C,D,F:NONE file1 file2 + + Chunked layout, with a layout size of 20x10, to objects A and B + and remove filters to objects C, D, F + +4) h5repack -L -c 10 -s 20:dtype file1 file2 + + Using latest file format with maximum compact group size of 10 and + and minimum shared datatype size of 20 + +5) h5repack -f SHUF -f GZIP=1 file1 file2 + + Add both filters SHUF and GZIP in this order to all datasets + +6) h5repack -f UD=307,1,9 file1 file2 + + Add bzip2 filter to all datasets + diff --git a/tools/testfiles/h5repack_filters.h5.ddl b/tools/h5repack/testfiles/h5repack_filters.h5.tst index 36e65b9..36e65b9 100644 --- a/tools/testfiles/h5repack_filters.h5.ddl +++ b/tools/h5repack/testfiles/h5repack_filters.h5.tst diff --git a/tools/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl b/tools/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl new file mode 100644 index 0000000..a7ba967 --- /dev/null +++ b/tools/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl @@ -0,0 +1,158 @@ +HDF5 "testfiles/out-plugin_test.h5repack_layout.h5" { +GROUP "/" { + DATASET "dset1" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 257 + COMMENT dynlib1 + PARAMS { 9 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE 0 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset2" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 257 + COMMENT dynlib1 + PARAMS { 9 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE 0 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset3" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 257 + COMMENT dynlib1 + PARAMS { 9 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE 0 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset4" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 257 + COMMENT dynlib1 + PARAMS { 9 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE 0 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_chunk" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, H5S_UNLIMITED ) } + STORAGE_LAYOUT { + CHUNKED ( 20, 10 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 257 + COMMENT dynlib1 + PARAMS { 9 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE 0 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_compact" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 257 + COMMENT dynlib1 + PARAMS { 9 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE 0 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } + DATASET "dset_contiguous" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } + STORAGE_LAYOUT { + CHUNKED ( 40, 20 ) + SIZE 3200 (1.000:1 COMPRESSION) + } + FILTERS { + USER_DEFINED_FILTER { + FILTER_ID 257 + COMMENT dynlib1 + PARAMS { 9 } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE 0 + } + ALLOCATION_TIME { + H5D_ALLOC_TIME_INCR + } + } +} +} diff --git a/tools/h5repack/testfiles/h5repack_layout.h5.ddl b/tools/h5repack/testfiles/h5repack_layout.h5.ddl index d380201..00c74f4 100644 --- a/tools/h5repack/testfiles/h5repack_layout.h5.ddl +++ b/tools/h5repack/testfiles/h5repack_layout.h5.ddl @@ -1,129 +1,605 @@ -HDF5 "./testfiles/out-deflate_limit.h5repack_layout.h5" { +HDF5 "h5repack_layout.h5" { GROUP "/" { DATASET "dset1" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } - STORAGE_LAYOUT { - CHUNKED ( 40, 20 ) - SIZE 1150 (2.783:1 COMPRESSION) - } - FILTERS { - COMPRESSION DEFLATE { LEVEL 1 } - } - FILLVALUE { - FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 - } - ALLOCATION_TIME { - H5D_ALLOC_TIME_INCR + DATA { + (0,0): 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, + (0,18): 18, 19, + (1,0): 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, + (1,16): 36, 37, 38, 39, + (2,0): 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, + (2,16): 56, 57, 58, 59, + (3,0): 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, + (3,16): 76, 77, 78, 79, + (4,0): 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, + (4,16): 96, 97, 98, 99, + (5,0): 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, + (5,13): 113, 114, 115, 116, 117, 118, 119, + (6,0): 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, + (6,13): 133, 134, 135, 136, 137, 138, 139, + (7,0): 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, + (7,13): 153, 154, 155, 156, 157, 158, 159, + (8,0): 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, + (8,13): 173, 174, 175, 176, 177, 178, 179, + (9,0): 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, + (9,13): 193, 194, 195, 196, 197, 198, 199, + (10,0): 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, + (10,12): 212, 213, 214, 215, 216, 217, 218, 219, + (11,0): 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, + (11,12): 232, 233, 234, 235, 236, 237, 238, 239, + (12,0): 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, + (12,12): 252, 253, 254, 255, 256, 257, 258, 259, + (13,0): 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, + (13,12): 272, 273, 274, 275, 276, 277, 278, 279, + (14,0): 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, + (14,12): 292, 293, 294, 295, 296, 297, 298, 299, + (15,0): 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, + (15,12): 312, 313, 314, 315, 316, 317, 318, 319, + (16,0): 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, + (16,12): 332, 333, 334, 335, 336, 337, 338, 339, + (17,0): 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, + (17,12): 352, 353, 354, 355, 356, 357, 358, 359, + (18,0): 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, + (18,12): 372, 373, 374, 375, 376, 377, 378, 379, + (19,0): 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, + (19,12): 392, 393, 394, 395, 396, 397, 398, 399, + (20,0): 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, + (20,12): 412, 413, 414, 415, 416, 417, 418, 419, + (21,0): 420, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, + (21,12): 432, 433, 434, 435, 436, 437, 438, 439, + (22,0): 440, 441, 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, + (22,12): 452, 453, 454, 455, 456, 457, 458, 459, + (23,0): 460, 461, 462, 463, 464, 465, 466, 467, 468, 469, 470, 471, + (23,12): 472, 473, 474, 475, 476, 477, 478, 479, + (24,0): 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, + (24,12): 492, 493, 494, 495, 496, 497, 498, 499, + (25,0): 500, 501, 502, 503, 504, 505, 506, 507, 508, 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673, 674, 675, 676, 677, 678, 679, + (34,0): 680, 681, 682, 683, 684, 685, 686, 687, 688, 689, 690, 691, + (34,12): 692, 693, 694, 695, 696, 697, 698, 699, + (35,0): 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, + (35,12): 712, 713, 714, 715, 716, 717, 718, 719, + (36,0): 720, 721, 722, 723, 724, 725, 726, 727, 728, 729, 730, 731, + (36,12): 732, 733, 734, 735, 736, 737, 738, 739, + (37,0): 740, 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, + (37,12): 752, 753, 754, 755, 756, 757, 758, 759, + (38,0): 760, 761, 762, 763, 764, 765, 766, 767, 768, 769, 770, 771, + (38,12): 772, 773, 774, 775, 776, 777, 778, 779, + (39,0): 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, + (39,12): 792, 793, 794, 795, 796, 797, 798, 799 } } DATASET "dset2" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } - STORAGE_LAYOUT { - CHUNKED ( 40, 20 ) - SIZE 1150 (2.783:1 COMPRESSION) - } - FILTERS { - COMPRESSION DEFLATE { LEVEL 1 } - } - FILLVALUE { - FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 - } - ALLOCATION_TIME { - H5D_ALLOC_TIME_INCR + DATA { + (0,0): 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, + (0,18): 18, 19, + (1,0): 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, + (1,16): 36, 37, 38, 39, + (2,0): 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, + (2,16): 56, 57, 58, 59, + (3,0): 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, + (3,16): 76, 77, 78, 79, + (4,0): 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, + (4,16): 96, 97, 98, 99, + (5,0): 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, + (5,13): 113, 114, 115, 116, 117, 118, 119, + (6,0): 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, + (6,13): 133, 134, 135, 136, 137, 138, 139, + (7,0): 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, + (7,13): 153, 154, 155, 156, 157, 158, 159, + (8,0): 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 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500, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, + (25,12): 512, 513, 514, 515, 516, 517, 518, 519, + (26,0): 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, + (26,12): 532, 533, 534, 535, 536, 537, 538, 539, + (27,0): 540, 541, 542, 543, 544, 545, 546, 547, 548, 549, 550, 551, + (27,12): 552, 553, 554, 555, 556, 557, 558, 559, + (28,0): 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, + (28,12): 572, 573, 574, 575, 576, 577, 578, 579, + (29,0): 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, + (29,12): 592, 593, 594, 595, 596, 597, 598, 599, + (30,0): 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, + (30,12): 612, 613, 614, 615, 616, 617, 618, 619, + (31,0): 620, 621, 622, 623, 624, 625, 626, 627, 628, 629, 630, 631, + (31,12): 632, 633, 634, 635, 636, 637, 638, 639, + (32,0): 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, + (32,12): 652, 653, 654, 655, 656, 657, 658, 659, + (33,0): 660, 661, 662, 663, 664, 665, 666, 667, 668, 669, 670, 671, + (33,12): 672, 673, 674, 675, 676, 677, 678, 679, + (34,0): 680, 681, 682, 683, 684, 685, 686, 687, 688, 689, 690, 691, + (34,12): 692, 693, 694, 695, 696, 697, 698, 699, + (35,0): 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, + (35,12): 712, 713, 714, 715, 716, 717, 718, 719, + (36,0): 720, 721, 722, 723, 724, 725, 726, 727, 728, 729, 730, 731, + (36,12): 732, 733, 734, 735, 736, 737, 738, 739, + (37,0): 740, 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, + (37,12): 752, 753, 754, 755, 756, 757, 758, 759, + (38,0): 760, 761, 762, 763, 764, 765, 766, 767, 768, 769, 770, 771, + (38,12): 772, 773, 774, 775, 776, 777, 778, 779, + (39,0): 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, + (39,12): 792, 793, 794, 795, 796, 797, 798, 799 } } DATASET "dset3" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } - STORAGE_LAYOUT { - CHUNKED ( 40, 20 ) - SIZE 1150 (2.783:1 COMPRESSION) - } - FILTERS { - COMPRESSION DEFLATE { LEVEL 1 } - } - FILLVALUE { - FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 - } - ALLOCATION_TIME { - H5D_ALLOC_TIME_INCR + DATA { + (0,0): 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, + (0,18): 18, 19, + (1,0): 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, + (1,16): 36, 37, 38, 39, + (2,0): 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, + (2,16): 56, 57, 58, 59, + (3,0): 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, + (3,16): 76, 77, 78, 79, + (4,0): 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, + (4,16): 96, 97, 98, 99, + (5,0): 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, + (5,13): 113, 114, 115, 116, 117, 118, 119, + (6,0): 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, + (6,13): 133, 134, 135, 136, 137, 138, 139, + (7,0): 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, + (7,13): 153, 154, 155, 156, 157, 158, 159, + (8,0): 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, + (8,13): 173, 174, 175, 176, 177, 178, 179, + (9,0): 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, + (9,13): 193, 194, 195, 196, 197, 198, 199, + (10,0): 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, + (10,12): 212, 213, 214, 215, 216, 217, 218, 219, + (11,0): 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, + (11,12): 232, 233, 234, 235, 236, 237, 238, 239, + (12,0): 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, + (12,12): 252, 253, 254, 255, 256, 257, 258, 259, + (13,0): 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, + (13,12): 272, 273, 274, 275, 276, 277, 278, 279, + (14,0): 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, + (14,12): 292, 293, 294, 295, 296, 297, 298, 299, + (15,0): 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, + (15,12): 312, 313, 314, 315, 316, 317, 318, 319, + (16,0): 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 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494, 495, 496, 497, 498, 499, + (25,0): 500, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, + (25,12): 512, 513, 514, 515, 516, 517, 518, 519, + (26,0): 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, + (26,12): 532, 533, 534, 535, 536, 537, 538, 539, + (27,0): 540, 541, 542, 543, 544, 545, 546, 547, 548, 549, 550, 551, + (27,12): 552, 553, 554, 555, 556, 557, 558, 559, + (28,0): 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, + (28,12): 572, 573, 574, 575, 576, 577, 578, 579, + (29,0): 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, + (29,12): 592, 593, 594, 595, 596, 597, 598, 599, + (30,0): 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, + (30,12): 612, 613, 614, 615, 616, 617, 618, 619, + (31,0): 620, 621, 622, 623, 624, 625, 626, 627, 628, 629, 630, 631, + (31,12): 632, 633, 634, 635, 636, 637, 638, 639, + (32,0): 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, + (32,12): 652, 653, 654, 655, 656, 657, 658, 659, + 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COMPRESSION) - } - FILTERS { - COMPRESSION DEFLATE { LEVEL 1 } - } - FILLVALUE { - FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 - } - ALLOCATION_TIME { - H5D_ALLOC_TIME_INCR + DATA { + (0,0): 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, + (0,18): 18, 19, + (1,0): 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, + (1,16): 36, 37, 38, 39, + (2,0): 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, + (2,16): 56, 57, 58, 59, + (3,0): 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, + (3,16): 76, 77, 78, 79, + (4,0): 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, + (4,16): 96, 97, 98, 99, + (5,0): 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, + (5,13): 113, 114, 115, 116, 117, 118, 119, + (6,0): 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, + (6,13): 133, 134, 135, 136, 137, 138, 139, + (7,0): 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, + (7,13): 153, 154, 155, 156, 157, 158, 159, + (8,0): 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, + (8,13): 173, 174, 175, 176, 177, 178, 179, + (9,0): 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, + (9,13): 193, 194, 195, 196, 197, 198, 199, + (10,0): 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, + (10,12): 212, 213, 214, 215, 216, 217, 218, 219, + (11,0): 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, + (11,12): 232, 233, 234, 235, 236, 237, 238, 239, + (12,0): 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, + (12,12): 252, 253, 254, 255, 256, 257, 258, 259, + (13,0): 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, + (13,12): 272, 273, 274, 275, 276, 277, 278, 279, + (14,0): 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, + (14,12): 292, 293, 294, 295, 296, 297, 298, 299, + (15,0): 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, + (15,12): 312, 313, 314, 315, 316, 317, 318, 319, + (16,0): 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, + (16,12): 332, 333, 334, 335, 336, 337, 338, 339, + (17,0): 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, + (17,12): 352, 353, 354, 355, 356, 357, 358, 359, + (18,0): 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, + (18,12): 372, 373, 374, 375, 376, 377, 378, 379, + (19,0): 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, + (19,12): 392, 393, 394, 395, 396, 397, 398, 399, + (20,0): 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, + (20,12): 412, 413, 414, 415, 416, 417, 418, 419, + (21,0): 420, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, + (21,12): 432, 433, 434, 435, 436, 437, 438, 439, + (22,0): 440, 441, 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, + (22,12): 452, 453, 454, 455, 456, 457, 458, 459, + (23,0): 460, 461, 462, 463, 464, 465, 466, 467, 468, 469, 470, 471, + (23,12): 472, 473, 474, 475, 476, 477, 478, 479, + (24,0): 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, + (24,12): 492, 493, 494, 495, 496, 497, 498, 499, + (25,0): 500, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, + (25,12): 512, 513, 514, 515, 516, 517, 518, 519, + (26,0): 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, + (26,12): 532, 533, 534, 535, 536, 537, 538, 539, + (27,0): 540, 541, 542, 543, 544, 545, 546, 547, 548, 549, 550, 551, + (27,12): 552, 553, 554, 555, 556, 557, 558, 559, + (28,0): 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, + (28,12): 572, 573, 574, 575, 576, 577, 578, 579, + (29,0): 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, + (29,12): 592, 593, 594, 595, 596, 597, 598, 599, + (30,0): 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, + (30,12): 612, 613, 614, 615, 616, 617, 618, 619, + (31,0): 620, 621, 622, 623, 624, 625, 626, 627, 628, 629, 630, 631, + (31,12): 632, 633, 634, 635, 636, 637, 638, 639, + (32,0): 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, + (32,12): 652, 653, 654, 655, 656, 657, 658, 659, + (33,0): 660, 661, 662, 663, 664, 665, 666, 667, 668, 669, 670, 671, + (33,12): 672, 673, 674, 675, 676, 677, 678, 679, + (34,0): 680, 681, 682, 683, 684, 685, 686, 687, 688, 689, 690, 691, + (34,12): 692, 693, 694, 695, 696, 697, 698, 699, + (35,0): 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, + (35,12): 712, 713, 714, 715, 716, 717, 718, 719, + (36,0): 720, 721, 722, 723, 724, 725, 726, 727, 728, 729, 730, 731, + (36,12): 732, 733, 734, 735, 736, 737, 738, 739, + (37,0): 740, 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, + (37,12): 752, 753, 754, 755, 756, 757, 758, 759, + (38,0): 760, 761, 762, 763, 764, 765, 766, 767, 768, 769, 770, 771, + (38,12): 772, 773, 774, 775, 776, 777, 778, 779, + (39,0): 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, + (39,12): 792, 793, 794, 795, 796, 797, 798, 799 } } DATASET "dset_chunk" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 40, 20 ) / ( 40, H5S_UNLIMITED ) } - STORAGE_LAYOUT { - CHUNKED ( 20, 10 ) - SIZE 1283 (2.494:1 COMPRESSION) - } - FILTERS { - COMPRESSION DEFLATE { LEVEL 1 } - } - FILLVALUE { - FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 - } - ALLOCATION_TIME { - H5D_ALLOC_TIME_INCR + DATA { + (0,0): 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, + (0,18): 18, 19, + (1,0): 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, + (1,16): 36, 37, 38, 39, + (2,0): 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, + (2,16): 56, 57, 58, 59, + (3,0): 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, + (3,16): 76, 77, 78, 79, + (4,0): 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, + (4,16): 96, 97, 98, 99, + (5,0): 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, + (5,13): 113, 114, 115, 116, 117, 118, 119, + (6,0): 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, + (6,13): 133, 134, 135, 136, 137, 138, 139, + (7,0): 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, + (7,13): 153, 154, 155, 156, 157, 158, 159, + (8,0): 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, + (8,13): 173, 174, 175, 176, 177, 178, 179, + (9,0): 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, + (9,13): 193, 194, 195, 196, 197, 198, 199, + (10,0): 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, + (10,12): 212, 213, 214, 215, 216, 217, 218, 219, + (11,0): 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, + (11,12): 232, 233, 234, 235, 236, 237, 238, 239, + (12,0): 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, + (12,12): 252, 253, 254, 255, 256, 257, 258, 259, + (13,0): 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, + (13,12): 272, 273, 274, 275, 276, 277, 278, 279, + (14,0): 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, + (14,12): 292, 293, 294, 295, 296, 297, 298, 299, + (15,0): 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, + (15,12): 312, 313, 314, 315, 316, 317, 318, 319, + (16,0): 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, + (16,12): 332, 333, 334, 335, 336, 337, 338, 339, + (17,0): 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, + (17,12): 352, 353, 354, 355, 356, 357, 358, 359, + (18,0): 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, + (18,12): 372, 373, 374, 375, 376, 377, 378, 379, + (19,0): 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, + (19,12): 392, 393, 394, 395, 396, 397, 398, 399, + (20,0): 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, + (20,12): 412, 413, 414, 415, 416, 417, 418, 419, + (21,0): 420, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, + (21,12): 432, 433, 434, 435, 436, 437, 438, 439, + (22,0): 440, 441, 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, + (22,12): 452, 453, 454, 455, 456, 457, 458, 459, + (23,0): 460, 461, 462, 463, 464, 465, 466, 467, 468, 469, 470, 471, + (23,12): 472, 473, 474, 475, 476, 477, 478, 479, + (24,0): 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, + (24,12): 492, 493, 494, 495, 496, 497, 498, 499, + (25,0): 500, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, + (25,12): 512, 513, 514, 515, 516, 517, 518, 519, + (26,0): 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, + (26,12): 532, 533, 534, 535, 536, 537, 538, 539, + (27,0): 540, 541, 542, 543, 544, 545, 546, 547, 548, 549, 550, 551, + (27,12): 552, 553, 554, 555, 556, 557, 558, 559, + (28,0): 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, + (28,12): 572, 573, 574, 575, 576, 577, 578, 579, + (29,0): 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, + (29,12): 592, 593, 594, 595, 596, 597, 598, 599, + (30,0): 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, + (30,12): 612, 613, 614, 615, 616, 617, 618, 619, + (31,0): 620, 621, 622, 623, 624, 625, 626, 627, 628, 629, 630, 631, + (31,12): 632, 633, 634, 635, 636, 637, 638, 639, + (32,0): 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, + (32,12): 652, 653, 654, 655, 656, 657, 658, 659, + (33,0): 660, 661, 662, 663, 664, 665, 666, 667, 668, 669, 670, 671, + (33,12): 672, 673, 674, 675, 676, 677, 678, 679, + (34,0): 680, 681, 682, 683, 684, 685, 686, 687, 688, 689, 690, 691, + (34,12): 692, 693, 694, 695, 696, 697, 698, 699, + (35,0): 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, + (35,12): 712, 713, 714, 715, 716, 717, 718, 719, + (36,0): 720, 721, 722, 723, 724, 725, 726, 727, 728, 729, 730, 731, + (36,12): 732, 733, 734, 735, 736, 737, 738, 739, + (37,0): 740, 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, + (37,12): 752, 753, 754, 755, 756, 757, 758, 759, + (38,0): 760, 761, 762, 763, 764, 765, 766, 767, 768, 769, 770, 771, + (38,12): 772, 773, 774, 775, 776, 777, 778, 779, + (39,0): 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, + (39,12): 792, 793, 794, 795, 796, 797, 798, 799 } } DATASET "dset_compact" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } - STORAGE_LAYOUT { - CHUNKED ( 40, 20 ) - SIZE 1150 (2.783:1 COMPRESSION) - } - FILTERS { - COMPRESSION DEFLATE { LEVEL 1 } - } - FILLVALUE { - FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 - } - ALLOCATION_TIME { - H5D_ALLOC_TIME_INCR + DATA { + (0,0): 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, + (0,18): 18, 19, + (1,0): 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, + (1,16): 36, 37, 38, 39, + (2,0): 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, + (2,16): 56, 57, 58, 59, + (3,0): 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, + (3,16): 76, 77, 78, 79, + (4,0): 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, + (4,16): 96, 97, 98, 99, + (5,0): 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, + (5,13): 113, 114, 115, 116, 117, 118, 119, + (6,0): 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, + (6,13): 133, 134, 135, 136, 137, 138, 139, + (7,0): 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, + (7,13): 153, 154, 155, 156, 157, 158, 159, + (8,0): 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, + (8,13): 173, 174, 175, 176, 177, 178, 179, + (9,0): 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, + (9,13): 193, 194, 195, 196, 197, 198, 199, + (10,0): 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, + (10,12): 212, 213, 214, 215, 216, 217, 218, 219, + (11,0): 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, + (11,12): 232, 233, 234, 235, 236, 237, 238, 239, + (12,0): 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, + (12,12): 252, 253, 254, 255, 256, 257, 258, 259, + (13,0): 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, + (13,12): 272, 273, 274, 275, 276, 277, 278, 279, + (14,0): 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, + (14,12): 292, 293, 294, 295, 296, 297, 298, 299, + (15,0): 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, + (15,12): 312, 313, 314, 315, 316, 317, 318, 319, + (16,0): 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, + (16,12): 332, 333, 334, 335, 336, 337, 338, 339, + (17,0): 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, + (17,12): 352, 353, 354, 355, 356, 357, 358, 359, + (18,0): 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, + (18,12): 372, 373, 374, 375, 376, 377, 378, 379, + (19,0): 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, + (19,12): 392, 393, 394, 395, 396, 397, 398, 399, + (20,0): 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, + (20,12): 412, 413, 414, 415, 416, 417, 418, 419, + (21,0): 420, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, + (21,12): 432, 433, 434, 435, 436, 437, 438, 439, + (22,0): 440, 441, 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, + (22,12): 452, 453, 454, 455, 456, 457, 458, 459, + (23,0): 460, 461, 462, 463, 464, 465, 466, 467, 468, 469, 470, 471, + (23,12): 472, 473, 474, 475, 476, 477, 478, 479, + (24,0): 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, + (24,12): 492, 493, 494, 495, 496, 497, 498, 499, + (25,0): 500, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, + (25,12): 512, 513, 514, 515, 516, 517, 518, 519, + (26,0): 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, + (26,12): 532, 533, 534, 535, 536, 537, 538, 539, + (27,0): 540, 541, 542, 543, 544, 545, 546, 547, 548, 549, 550, 551, + (27,12): 552, 553, 554, 555, 556, 557, 558, 559, + (28,0): 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, + (28,12): 572, 573, 574, 575, 576, 577, 578, 579, + (29,0): 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, + (29,12): 592, 593, 594, 595, 596, 597, 598, 599, + (30,0): 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, + (30,12): 612, 613, 614, 615, 616, 617, 618, 619, + (31,0): 620, 621, 622, 623, 624, 625, 626, 627, 628, 629, 630, 631, + (31,12): 632, 633, 634, 635, 636, 637, 638, 639, + (32,0): 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, + (32,12): 652, 653, 654, 655, 656, 657, 658, 659, + (33,0): 660, 661, 662, 663, 664, 665, 666, 667, 668, 669, 670, 671, + (33,12): 672, 673, 674, 675, 676, 677, 678, 679, + (34,0): 680, 681, 682, 683, 684, 685, 686, 687, 688, 689, 690, 691, + (34,12): 692, 693, 694, 695, 696, 697, 698, 699, + (35,0): 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, + (35,12): 712, 713, 714, 715, 716, 717, 718, 719, + (36,0): 720, 721, 722, 723, 724, 725, 726, 727, 728, 729, 730, 731, + (36,12): 732, 733, 734, 735, 736, 737, 738, 739, + (37,0): 740, 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, + (37,12): 752, 753, 754, 755, 756, 757, 758, 759, + (38,0): 760, 761, 762, 763, 764, 765, 766, 767, 768, 769, 770, 771, + (38,12): 772, 773, 774, 775, 776, 777, 778, 779, + (39,0): 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, + (39,12): 792, 793, 794, 795, 796, 797, 798, 799 } } DATASET "dset_contiguous" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } - STORAGE_LAYOUT { - CHUNKED ( 40, 20 ) - SIZE 1150 (2.783:1 COMPRESSION) - } - FILTERS { - COMPRESSION DEFLATE { LEVEL 1 } - } - FILLVALUE { - FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 - } - ALLOCATION_TIME { - H5D_ALLOC_TIME_INCR + DATA { + (0,0): 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, + (0,18): 18, 19, + (1,0): 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, + (1,16): 36, 37, 38, 39, + (2,0): 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, + (2,16): 56, 57, 58, 59, + (3,0): 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, + (3,16): 76, 77, 78, 79, + (4,0): 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, + (4,16): 96, 97, 98, 99, + (5,0): 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, + (5,13): 113, 114, 115, 116, 117, 118, 119, + (6,0): 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, + (6,13): 133, 134, 135, 136, 137, 138, 139, + (7,0): 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, + (7,13): 153, 154, 155, 156, 157, 158, 159, + (8,0): 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, + (8,13): 173, 174, 175, 176, 177, 178, 179, + (9,0): 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, + (9,13): 193, 194, 195, 196, 197, 198, 199, + (10,0): 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, + (10,12): 212, 213, 214, 215, 216, 217, 218, 219, + (11,0): 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, + (11,12): 232, 233, 234, 235, 236, 237, 238, 239, + (12,0): 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, + (12,12): 252, 253, 254, 255, 256, 257, 258, 259, + (13,0): 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, + (13,12): 272, 273, 274, 275, 276, 277, 278, 279, + (14,0): 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, + (14,12): 292, 293, 294, 295, 296, 297, 298, 299, + (15,0): 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, + (15,12): 312, 313, 314, 315, 316, 317, 318, 319, + (16,0): 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, + (16,12): 332, 333, 334, 335, 336, 337, 338, 339, + (17,0): 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, + (17,12): 352, 353, 354, 355, 356, 357, 358, 359, + (18,0): 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, + (18,12): 372, 373, 374, 375, 376, 377, 378, 379, + (19,0): 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, + (19,12): 392, 393, 394, 395, 396, 397, 398, 399, + (20,0): 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, + (20,12): 412, 413, 414, 415, 416, 417, 418, 419, + (21,0): 420, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, + (21,12): 432, 433, 434, 435, 436, 437, 438, 439, + (22,0): 440, 441, 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, + (22,12): 452, 453, 454, 455, 456, 457, 458, 459, + (23,0): 460, 461, 462, 463, 464, 465, 466, 467, 468, 469, 470, 471, + (23,12): 472, 473, 474, 475, 476, 477, 478, 479, + (24,0): 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, + (24,12): 492, 493, 494, 495, 496, 497, 498, 499, + (25,0): 500, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, + (25,12): 512, 513, 514, 515, 516, 517, 518, 519, + (26,0): 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, + (26,12): 532, 533, 534, 535, 536, 537, 538, 539, + (27,0): 540, 541, 542, 543, 544, 545, 546, 547, 548, 549, 550, 551, + (27,12): 552, 553, 554, 555, 556, 557, 558, 559, + (28,0): 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, + (28,12): 572, 573, 574, 575, 576, 577, 578, 579, + (29,0): 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, + (29,12): 592, 593, 594, 595, 596, 597, 598, 599, + (30,0): 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610, 611, + (30,12): 612, 613, 614, 615, 616, 617, 618, 619, + (31,0): 620, 621, 622, 623, 624, 625, 626, 627, 628, 629, 630, 631, + (31,12): 632, 633, 634, 635, 636, 637, 638, 639, + (32,0): 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, + (32,12): 652, 653, 654, 655, 656, 657, 658, 659, + (33,0): 660, 661, 662, 663, 664, 665, 666, 667, 668, 669, 670, 671, + (33,12): 672, 673, 674, 675, 676, 677, 678, 679, + (34,0): 680, 681, 682, 683, 684, 685, 686, 687, 688, 689, 690, 691, + (34,12): 692, 693, 694, 695, 696, 697, 698, 699, + (35,0): 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, + (35,12): 712, 713, 714, 715, 716, 717, 718, 719, + (36,0): 720, 721, 722, 723, 724, 725, 726, 727, 728, 729, 730, 731, + (36,12): 732, 733, 734, 735, 736, 737, 738, 739, + (37,0): 740, 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, + (37,12): 752, 753, 754, 755, 756, 757, 758, 759, + (38,0): 760, 761, 762, 763, 764, 765, 766, 767, 768, 769, 770, 771, + (38,12): 772, 773, 774, 775, 776, 777, 778, 779, + (39,0): 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, + (39,12): 792, 793, 794, 795, 796, 797, 798, 799 } } } diff --git a/tools/h5repack/testfiles/plugin_test.h5repack_layout.h5.tst b/tools/h5repack/testfiles/plugin_test.h5repack_layout.h5.tst new file mode 100644 index 0000000..7f9bd6e --- /dev/null +++ b/tools/h5repack/testfiles/plugin_test.h5repack_layout.h5.tst @@ -0,0 +1,14 @@ +Objects to modify layout are... +Objects to apply filter are... + User Defined 257 +----------------------------------------- + Type Filter (Compression) Name +----------------------------------------- + group / + dset UD (1.000:1) /dset1 + dset UD (1.000:1) /dset2 + dset UD (1.000:1) /dset3 + dset UD (1.000:1) /dset4 + dset UD (1.000:1) /dset_chunk + dset UD (1.000:1) /dset_compact + dset UD (1.000:1) /dset_contiguous |