diff options
Diffstat (limited to 'tools')
| -rw-r--r-- | tools/h5tools.c | 771 |
1 files changed, 390 insertions, 381 deletions
diff --git a/tools/h5tools.c b/tools/h5tools.c index 15229d6..52851ca 100644 --- a/tools/h5tools.c +++ b/tools/h5tools.c @@ -299,7 +299,7 @@ h5dump_str_fmt(h5dump_str_t *str/*in,out*/, size_t start, const char *fmt) * don't bother because we don't need a temporary copy. */ if (strchr(fmt, '%')) { - if (str->len-start + 1 > sizeof(_temp)) { + if (str->len - start + 1 > sizeof(_temp)) { temp = malloc(str->len-start + 1); assert(temp); } @@ -342,6 +342,7 @@ h5dump_prefix(h5dump_str_t *str/*in,out*/, const h5dump_t *info, hsize_t n, i = 0; h5dump_str_reset(str); + if (ndims > 0) { /* * Calculate the number of elements represented by a unit change in a @@ -363,7 +364,9 @@ h5dump_prefix(h5dump_str_t *str/*in,out*/, const h5dump_t *info, * Print the index values. */ for (i = 0; i < (hsize_t)ndims; i++) { - if (i) h5dump_str_append(str, "%s", OPT(info->idx_sep, ",")); + if (i) + h5dump_str_append(str, "%s", OPT(info->idx_sep, ",")); + h5dump_str_append(str, OPT(info->idx_n_fmt, "%lu"), (unsigned long)p_idx[i]); } @@ -401,12 +404,12 @@ h5dump_prefix(h5dump_str_t *str/*in,out*/, const h5dump_t *info, static char * h5dump_escape(char *s/*in,out*/, size_t size, int escape_spaces) { - size_t n = strlen(s); - size_t i; - const char *escape; - char octal[8]; + size_t n = strlen(s); + size_t i; + const char *escape; + char octal[8]; - for (i=0; i<n; i++) { + for (i = 0; i < n; i++) { switch (s[i]) { case '"': escape = "\\\""; @@ -434,23 +437,29 @@ h5dump_escape(char *s/*in,out*/, size_t size, int escape_spaces) break; default: if (!isprint((int)*s)) { - sprintf(octal, "\\%03o", (unsigned char)(s[i])); + sprintf(octal, "\\%03o", (unsigned char)s[i]); escape = octal; } else { escape = NULL; } + break; } if (escape) { size_t esc_size = strlen(escape); - if (n+esc_size+1>size) return NULL; /*would overflow*/ - memmove(s+i+esc_size, s+i, (n-i)+1); /*make room*/ - memcpy(s+i, escape, esc_size); /*insert*/ + + if (n + esc_size + 1 > size) + /*would overflow*/ + return NULL; + + memmove(s + i + esc_size, s + i, (n - i) + 1); /*make room*/ + memcpy(s + i, escape, esc_size); /*insert*/ n += esc_size; i += esc_size - 1; } } + return s; } @@ -471,10 +480,12 @@ h5dump_escape(char *s/*in,out*/, size_t size, int escape_spaces) static hbool_t h5dump_is_zero(const void *_mem, size_t size) { - const unsigned char *mem = (const unsigned char*)_mem; - while (size-- > 0) { - if (mem[size]) return FALSE; - } + const unsigned char *mem = (const unsigned char *)_mem; + + while (size-- > 0) + if (mem[size]) + return FALSE; + return TRUE; } @@ -498,9 +509,8 @@ h5dump_is_zero(const void *_mem, size_t size) static int h5dump_region(hid_t region, h5dump_str_t *str/*in,out*/, const h5dump_t *info) { - hssize_t nblocks, npoints, i; + hssize_t nblocks, npoints; hsize_t *ptdata; - int j; int ndims = H5Sget_simple_extent_ndims(region); /* @@ -512,48 +522,54 @@ h5dump_region(hid_t region, h5dump_str_t *str/*in,out*/, const h5dump_t *info) nblocks = H5Sget_select_hyper_nblocks(region); npoints = H5Sget_select_elem_npoints(region); } H5E_END_TRY; + h5dump_str_append(str, "{"); /* Print block information */ - if (nblocks>0) { - ptdata = malloc(nblocks*ndims*2*sizeof(ptdata[0])); + if (nblocks > 0) { + int i, j; + + ptdata = malloc(nblocks * ndims * 2 * sizeof(ptdata[0])); H5Sget_select_hyper_blocklist(region, 0, nblocks, ptdata); - for (i=0; i<nblocks; i++) { + for (i = 0; i < nblocks; i++) { h5dump_str_append(str, info->dset_blockformat_pre, - i?","OPTIONAL_LINE_BREAK" ":"", + i ? "," OPTIONAL_LINE_BREAK " " : "", (unsigned long)i); /* Start coordinates and opposite corner */ - for (j=0; j<ndims; j++) { - h5dump_str_append(str, "%s%lu", j?",":"(", - (unsigned long)(ptdata[i*2*ndims+j])); - } - for (j=0; j<ndims; j++) { - h5dump_str_append(str, "%s%lu", j?",":")-(", - (unsigned long)(ptdata[i*2*ndims+j+ndims])); - } + for (j = 0; j < ndims; j++) + h5dump_str_append(str, "%s%lu", j ? "," : "(", + (unsigned long)ptdata[i * 2 * ndims + j]); + + for (j = 0; j < ndims; j++) + h5dump_str_append(str, "%s%lu", j ? "," : ")-(", + (unsigned long)ptdata[i * 2 * ndims + j + ndims]); + h5dump_str_append(str, ")"); } free(ptdata); } /* Print point information */ - if (npoints>0) { - ptdata = malloc(npoints*ndims*sizeof(ptdata[0])); + if (npoints > 0) { + int i, j; + + ptdata = malloc(npoints * ndims * sizeof(ptdata[0])); H5Sget_select_elem_pointlist(region, 0, npoints, ptdata); - for (i=0; i<npoints; i++) { + for (i = 0; i < npoints; i++) { h5dump_str_append(str, info->dset_ptformat_pre , - i?","OPTIONAL_LINE_BREAK" ":"", + i ? "," OPTIONAL_LINE_BREAK " " : "", (unsigned long)i); - for (j=0; j<ndims; j++) { - h5dump_str_append(str, "%s%lu", j?",":"(", - (unsigned long)(ptdata[i*ndims+j])); - } + for (j = 0; j < ndims; j++) + h5dump_str_append(str, "%s%lu", j ? "," : "(", + (unsigned long)(ptdata[i * ndims + j])); + h5dump_str_append(str, ")"); } + free(ptdata); } @@ -591,10 +607,12 @@ static char * h5dump_sprint(h5dump_str_t *str/*in,out*/, const h5dump_t *info, hid_t container, hid_t type, void *vp, h5dump_context_t *ctx) { - size_t i, n, offset, size, dims[H5S_MAX_RANK], nelmts, start; + size_t n, offset, size, dims[H5S_MAX_RANK], nelmts, start; char *name, quote='\0'; + unsigned char *ucp_vp = (unsigned char *)vp; + char *cp_vp = (char *)vp; hid_t memb, obj, region; - int nmembs, x, j, k, ndims, otype; + int nmembs, ndims, otype; static char fmt_llong[8], fmt_ullong[8]; H5T_str_t pad; H5G_stat_t sb; @@ -618,36 +636,33 @@ h5dump_sprint(h5dump_str_t *str/*in,out*/, const h5dump_t *info, sprintf(fmt_ullong, "%%%su", PRINTF_LL_WIDTH); } - /* Append value depending on data type */ start = h5dump_str_len(str); + if (info->raw) { + unsigned int i; + h5dump_str_append(str, "0x"); n = H5Tget_size(type); - for (i=0; i<n; i++) { - h5dump_str_append(str, OPT(info->fmt_raw, "%02x"), - ((unsigned char*)vp)[i]); - } - + + for (i = 0; i < n; i++) + h5dump_str_append(str, OPT(info->fmt_raw, "%02x"), ucp_vp[i]); } else if (H5Tequal(type, H5T_NATIVE_DOUBLE)) { - memcpy(&tempdouble,vp,sizeof(double)); + memcpy(&tempdouble, vp, sizeof(double)); h5dump_str_append(str, OPT(info->fmt_double, "%g"), tempdouble); - } else if (H5Tequal(type, H5T_NATIVE_FLOAT)) { - memcpy(&tempfloat,vp,sizeof(float)); + memcpy(&tempfloat, vp, sizeof(float)); h5dump_str_append(str, OPT(info->fmt_double, "%g"), tempfloat); - } else if (info->ascii && (H5Tequal(type, H5T_NATIVE_SCHAR) || H5Tequal(type, H5T_NATIVE_UCHAR))) { - if (ESCAPE_HTML==info->str_locale) { - if (*((char*)vp)<=' ' || *((char*)vp)>'~') { - h5dump_str_append(str, "%%%02X", *((unsigned char*)vp)); - } else { - h5dump_str_append(str, "%c", *((char*)vp)); - } + if (ESCAPE_HTML == info->str_locale) { + if (*cp_vp <= ' ' || *cp_vp > '~') + h5dump_str_append(str, "%%%02X", *ucp_vp); + else + h5dump_str_append(str, "%c", *cp_vp); } else { - switch (*((char*)vp)) { + switch (*cp_vp) { case '"': h5dump_str_append(str, "\\\""); break; @@ -670,60 +685,62 @@ h5dump_sprint(h5dump_str_t *str/*in,out*/, const h5dump_t *info, h5dump_str_append(str, "\\t"); break; default: - if (isprint(*((char*)vp))) { - h5dump_str_append(str, "%c", *((char*)vp)); + if (isprint(*cp_vp)) { + h5dump_str_append(str, "%c", *cp_vp); } else { - h5dump_str_append(str, "\\%03o", *((unsigned char*)vp)); + h5dump_str_append(str, "\\%03o", *ucp_vp); } break; } } } else if (H5T_STRING==H5Tget_class(type)) { + unsigned int i; + size = H5Tget_size(type); quote = '\0'; pad = H5Tget_strpad(type); for (i=0; - i<size && ((pad == H5T_STR_NULLPAD)?1:(((char*)vp)[i] != '\0')); + i < size && ((pad == H5T_STR_NULLPAD) ? 1 : (cp_vp[i] != '\0')); i++) { - + int j = 1; /* * Count how many times the next character repeats. If the * threshold is zero then that means it can repeat any number * of times. */ - j=1; - if (info->str_repeat>0) { - while (i+j<size && ((char*)vp)[i]==((char*)vp)[i+j]) j++; - } + if (info->str_repeat > 0) + while (i + j < size && cp_vp[i] == cp_vp[i + j]) + j++; - /* * Print the opening quote. If the repeat count is high enough to * warrant printing the number of repeats instead of enumerating * the characters, then make sure the character to be repeated is * in it's own quote. */ - if (info->str_repeat>0 && j>info->str_repeat) { - if (quote) h5dump_str_append(str, "%c", quote); + if (info->str_repeat > 0 && j > info->str_repeat) { + if (quote) + h5dump_str_append(str, "%c", quote); + quote = '\''; - h5dump_str_append(str, "%s%c", i?" ":"", quote); + h5dump_str_append(str, "%s%c", i ? " " : "", quote); } else if (!quote) { quote = '"'; - h5dump_str_append(str, "%s%c", i?" ":"", quote); + h5dump_str_append(str, "%s%c", i ? " " : "", quote); } /* Print the character */ - if (ESCAPE_HTML==info->str_locale) { - if (((char*)vp)[i]<=' ' || ((char*)vp)[i]>'~') { - h5dump_str_append(str, "%%%02X", ((unsigned char*)vp)[i]); + if (ESCAPE_HTML == info->str_locale) { + if (cp_vp[i] <= ' ' || cp_vp[i] > '~') { + h5dump_str_append(str, "%%%02X", ucp_vp[i]); } else { - h5dump_str_append(str, "%c", ((char*)vp)[i]); + h5dump_str_append(str, "%c", cp_vp[i]); } } else { - switch (((char*)vp)[i]) { + switch (cp_vp[i]) { case '"': h5dump_str_append(str, "\\\""); break; @@ -746,89 +763,77 @@ h5dump_sprint(h5dump_str_t *str/*in,out*/, const h5dump_t *info, h5dump_str_append(str, "\\t"); break; default: - if (isprint(((char*)vp)[i])) { - h5dump_str_append(str, "%c", ((char*)vp)[i]); - } else { - h5dump_str_append(str, "\\%03o", - ((unsigned char*)vp)[i]); - } + if (isprint(cp_vp[i])) + h5dump_str_append(str, "%c", cp_vp[i]); + else + h5dump_str_append(str, "\\%03o", ucp_vp[i]); + break; } } /* Print the repeat count */ - if (info->str_repeat && j>info->str_repeat) { + if (info->str_repeat && j > info->str_repeat) { #ifdef REPEAT_VERBOSE - h5dump_str_append(str, "%c repeats %d times", quote, j-1); + h5dump_str_append(str, "%c repeats %d times", quote, j - 1); #else - h5dump_str_append(str, "%c*%d", quote, j-1); + h5dump_str_append(str, "%c*%d", quote, j - 1); #endif quote = '\0'; - i += j-1; + i += j - 1; } } - if (quote) h5dump_str_append(str, "%c", quote); - if (0==i) { + if (quote) + h5dump_str_append(str, "%c", quote); + + if (0 == i) h5dump_str_append(str, "\"\""); /*empty string*/ - } - - } else if (H5Tequal(type, H5T_NATIVE_INT)) { memcpy(&tempint, vp, sizeof(int)); h5dump_str_append(str, OPT(info->fmt_int, "%d"), tempint); - } else if (H5Tequal(type, H5T_NATIVE_UINT)) { memcpy(&tempuint, vp, sizeof(unsigned int)); h5dump_str_append(str, OPT(info->fmt_uint, "%u"), tempuint); - } else if (H5Tequal(type, H5T_NATIVE_SCHAR)) { h5dump_str_append(str, OPT(info->fmt_schar, "%d"), *((signed char*)vp)); - } else if (H5Tequal(type, H5T_NATIVE_UCHAR)) { h5dump_str_append(str, OPT(info->fmt_uchar, "%u"), *((unsigned char*)vp)); - } else if (H5Tequal(type, H5T_NATIVE_SHORT)) { memcpy(&tempshort, vp, sizeof(short)); h5dump_str_append(str, OPT(info->fmt_short, "%d"), tempshort); - } else if (H5Tequal(type, H5T_NATIVE_USHORT)) { memcpy(&tempushort, vp, sizeof(unsigned short)); h5dump_str_append(str, OPT(info->fmt_ushort, "%u"), tempushort); - } else if (H5Tequal(type, H5T_NATIVE_LONG)) { memcpy(&templong, vp, sizeof(long)); h5dump_str_append(str, OPT(info->fmt_long, "%ld"), templong); - } else if (H5Tequal(type, H5T_NATIVE_ULONG)) { memcpy(&tempulong, vp, sizeof(unsigned long)); h5dump_str_append(str, OPT(info->fmt_ulong, "%lu"), tempulong); - } else if (H5Tequal(type, H5T_NATIVE_LLONG)) { memcpy(&templlong, vp, sizeof(long_long)); h5dump_str_append(str, OPT(info->fmt_llong, fmt_llong), templlong); - } else if (H5Tequal(type, H5T_NATIVE_ULLONG)) { memcpy(&tempullong, vp, sizeof(unsigned long_long)); h5dump_str_append(str, OPT(info->fmt_ullong, fmt_ullong), tempullong); - } else if (H5Tequal(type, H5T_NATIVE_HSSIZE)) { - if (sizeof(hssize_t)==sizeof(int)) { + if (sizeof(hssize_t) == sizeof(int)) { memcpy(&tempint, vp, sizeof(int)); h5dump_str_append(str, OPT(info->fmt_int, "%d"), tempint); - } else if (sizeof(hssize_t)==sizeof(long)) { + } else if (sizeof(hssize_t) == sizeof(long)) { memcpy(&templong, vp, sizeof(long)); h5dump_str_append(str, OPT(info->fmt_long, "%ld"), templong); @@ -839,11 +844,11 @@ h5dump_sprint(h5dump_str_t *str/*in,out*/, const h5dump_t *info, } } else if (H5Tequal(type, H5T_NATIVE_HSIZE)) { - if (sizeof(hsize_t)==sizeof(int)) { + if (sizeof(hsize_t) == sizeof(int)) { memcpy(&tempuint, vp, sizeof(unsigned int)); h5dump_str_append(str, OPT(info->fmt_uint, "%u"), tempuint); - } else if (sizeof(hsize_t)==sizeof(long)) { + } else if (sizeof(hsize_t) == sizeof(long)) { memcpy(&tempulong, vp, sizeof(long)); h5dump_str_append(str, OPT(info->fmt_ulong, "%lu"), tempulong); @@ -852,13 +857,16 @@ h5dump_sprint(h5dump_str_t *str/*in,out*/, const h5dump_t *info, h5dump_str_append(str, OPT(info->fmt_ullong, fmt_ullong), tempullong); } - } else if (H5T_COMPOUND==H5Tget_class(type)) { + int j, x; + nmembs = H5Tget_nmembers(type); h5dump_str_append(str, "%s", OPT(info->cmpd_pre, "{")); - - - for (j=0; j<nmembs; j++) { + + for (j = 0; j < nmembs; j++) { + unsigned int i; + int k; + if (j) h5dump_str_append(str, "%s", OPT(info->cmpd_sep, ", " OPTIONAL_LINE_BREAK)); @@ -872,55 +880,56 @@ h5dump_sprint(h5dump_str_t *str/*in,out*/, const h5dump_t *info, if (ctx->indent_level >= 0 && str->len && '\n'==str->s[str->len-1]) { h5dump_str_append(str, OPT(info->line_pre, ""), ""); + for (x=0; x<ctx->indent_level+1; x++) { h5dump_str_append(str, "%s", OPT(info->line_indent, "")); } } - + /* The name */ name = H5Tget_member_name(type, j); h5dump_str_append(str, OPT(info->cmpd_name, ""), name); free(name); - + /* The value */ offset = H5Tget_member_offset(type, j); memb = H5Tget_member_type(type, j); size = H5Tget_size(memb); ndims = H5Tget_member_dims(type, j, dims, NULL); assert(ndims>=0 && ndims<=H5S_MAX_RANK); - for (k=0, nelmts=1; k<ndims; k++) nelmts *= dims[k]; + + for (k = 0, nelmts = 1; k < ndims; k++) + nelmts *= dims[k]; - if (nelmts>1) { + if (nelmts > 1) h5dump_str_append(str, "%s", OPT(info->arr_pre, "[")); - } - for (i=0; i<nelmts; i++) { - if (i) { + + for (i = 0; i < nelmts; i++) { + if (i) h5dump_str_append(str, "%s", - OPT(info->arr_sep, - "," OPTIONAL_LINE_BREAK)); - } + OPT(info->arr_sep, "," OPTIONAL_LINE_BREAK)); - if (ndims>0 && info->arr_linebreak && - i && 0==i%dims[ndims-1]) { + if (ndims > 0 && info->arr_linebreak && i && 0 == i % dims[ndims - 1]) { h5dump_str_append(str, "%s", "\n"); + /*need to indent some more here*/ - if (ctx->indent_level >= 0) { + if (ctx->indent_level >= 0) h5dump_str_append(str, "%s", OPT(info->line_pre, "")); - } - for (x=0; x < ctx->indent_level+1; x++){ + + for (x = 0; x < ctx->indent_level + 1; x++) h5dump_str_append(str,"%s",OPT(info->line_indent,"")); - } } + ctx->indent_level++; h5dump_sprint(str, info, container, memb, - (char*)vp+offset+i*size, ctx); + cp_vp + offset + i * size, ctx); ctx->indent_level--; } - if (nelmts>1) { + + if (nelmts > 1) h5dump_str_append(str, "%s", OPT(info->arr_suf, "]")); - } - H5Tclose(memb); + H5Tclose(memb); } /* RPM 2000-10-31 @@ -930,28 +939,32 @@ h5dump_sprint(h5dump_str_t *str/*in,out*/, const h5dump_t *info, * that object indices at the beginning of the line will be missing * (h5dump doesn't display them anyway). */ h5dump_str_append(str, "%s", OPT(info->cmpd_end, "")); + if (ctx->indent_level >= 0 && str->len && '\n'==str->s[str->len-1]) { h5dump_str_append(str, OPT(info->line_pre, ""), ""); - for (x=0; x<ctx->indent_level; x++) { + + for (x = 0; x < ctx->indent_level; x++) { h5dump_str_append(str, "%s", OPT(info->line_indent, "")); } } + h5dump_str_append(str, "%s", OPT(info->cmpd_suf, "}")); - } else if (H5T_ENUM==H5Tget_class(type)) { char enum_name[1024]; - if (H5Tenum_nameof(type, vp, enum_name, sizeof enum_name)>=0) { - h5dump_str_append(str, h5dump_escape(enum_name, sizeof enum_name, + + if (H5Tenum_nameof(type, vp, enum_name, sizeof enum_name) >= 0) { + h5dump_str_append(str, h5dump_escape(enum_name, sizeof(enum_name), TRUE)); } else { + unsigned int i; + h5dump_str_append(str, "0x"); n = H5Tget_size(type); - for (i=0; i<n; i++) { - h5dump_str_append(str, "%02x", ((unsigned char*)vp)[i]); - } + + for (i = 0; i < n; i++) + h5dump_str_append(str, "%02x", ucp_vp[i]); } - } else if (H5Tequal(type, H5T_STD_REF_DSETREG)) { /* * Dataset region reference -- show the type and OID of the referenced @@ -964,19 +977,19 @@ h5dump_sprint(h5dump_str_t *str/*in,out*/, const h5dump_t *info, obj = H5Rdereference(container, H5R_DATASET_REGION, vp); region = H5Rget_region(container, H5R_DATASET_REGION, vp); H5Gget_objinfo(obj, ".", FALSE, &sb); - if (info->dset_hidefileno){ + + if (info->dset_hidefileno) h5dump_str_append(str, info->dset_format, sb.objno[1], sb.objno[0]); - } else { + else h5dump_str_append(str, info->dset_format, sb.fileno[1], sb.fileno[0], sb.objno[1], sb.objno[0]); - } + h5dump_region(region, str, info); H5Sclose(region); H5Dclose(obj); } - } else if (H5Tequal(type, H5T_STD_REF_OBJ)) { /* * Object references -- show the type and OID of the referenced @@ -1018,14 +1031,15 @@ h5dump_sprint(h5dump_str_t *str/*in,out*/, const h5dump_t *info, sb.objno[1], sb.objno[0]); } } - } else { /* All other types get printed as hexadecimal */ + unsigned int i; + h5dump_str_append(str, "0x"); n = H5Tget_size(type); - for (i=0; i<n; i++) { - h5dump_str_append(str, "%02x", ((unsigned char*)vp)[i]); - } + + for (i = 0; i < n; i++) + h5dump_str_append(str, "%02x", ((unsigned char *)vp)[i]); } return h5dump_str_fmt(str, start, OPT(info->elmt_fmt, "%s")); @@ -1052,9 +1066,12 @@ h5dump_sprint(h5dump_str_t *str/*in,out*/, const h5dump_t *info, static size_t h5dump_ncols(const char *s) { - size_t i; + size_t i; - for (i=0; *s; s++) if (*s>=' ') i++; + for (i = 0; *s; s++) + if (*s >= ' ') + i++; + return i; } @@ -1080,12 +1097,14 @@ static void h5dump_simple_prefix(FILE *stream, const h5dump_t *info, h5dump_context_t *ctx, hsize_t elmtno, int secnum) { - h5dump_str_t prefix; + h5dump_str_t prefix; size_t templength = 0; int i, indentlevel = 0; memset(&prefix, 0, sizeof(h5dump_str_t)); - if (!ctx->need_prefix) return; + + if (!ctx->need_prefix) + return; /* Terminate previous line, if any */ if (ctx->cur_column) { @@ -1111,22 +1130,22 @@ h5dump_simple_prefix(FILE *stream, const h5dump_t *info, * info for the data(like the tattr-2.ddl example. if that happens * the ctx->indent_level a negative so we need to skip the above * and just print out the default indent levels. */ - indentlevel = ctx->default_indent_level; + indentlevel = ctx->default_indent_level; } - if (0==elmtno && 0==secnum && info->line_1st) { - fputs(h5dump_str_fmt(&prefix, 0, info->line_1st), stream); - } else if (secnum && info->line_cont) { - fputs(h5dump_str_fmt(&prefix, 0, info->line_cont), - stream); - } else { - fputs(h5dump_str_fmt(&prefix, 0, info->line_pre), stream); - } - templength = h5dump_str_len(&prefix); - for (i = 0; i < indentlevel; i++){ - fputs(h5dump_str_fmt(&prefix, 0, info->line_indent), stream); - templength += h5dump_str_len(&prefix); - } + if (elmtno == 0 && secnum == 0 && info->line_1st) + fputs(h5dump_str_fmt(&prefix, 0, info->line_1st), stream); + else if (secnum && info->line_cont) + fputs(h5dump_str_fmt(&prefix, 0, info->line_cont), stream); + else + fputs(h5dump_str_fmt(&prefix, 0, info->line_pre), stream); + + templength = h5dump_str_len(&prefix); + + for (i = 0; i < indentlevel; i++){ + fputs(h5dump_str_fmt(&prefix, 0, info->line_indent), stream); + templength += h5dump_str_len(&prefix); + } ctx->cur_column = ctx->prev_prefix_len = templength; ctx->cur_elmt = 0; @@ -1188,23 +1207,27 @@ h5dump_simple_data(FILE *stream, const h5dump_t *info, hid_t container, /* Setup */ memset(&buffer, 0, sizeof(h5dump_str_t)); size = H5Tget_size(type); - if (info->line_ncols>0) ncols = info->line_ncols; + + if (info->line_ncols > 0) + ncols = info->line_ncols; + h5dump_simple_prefix(stream, info, ctx, 0, 0); - for (i=0; i<nelmts; i++, ctx->cur_elmt++, elmt_counter++){ + for (i = 0; i < nelmts; i++, ctx->cur_elmt++, elmt_counter++){ /* Render the element */ h5dump_str_reset(&buffer); h5dump_sprint(&buffer, info, container, type, mem+i*size, ctx); - if (i+1<nelmts || 0==(flags & END_OF_DATA)) { + + if (i + 1 < nelmts || 0 == (flags & END_OF_DATA)) h5dump_str_append(&buffer, "%s", OPT(info->elmt_suf1, ",")); - } + s = h5dump_str_fmt(&buffer, 0, "%s"); /* * If the element would split on multiple lines if printed at our * current location... */ - if (1==info->line_multi_new && + if (info->line_multi_new == 1 && (ctx->cur_column + h5dump_ncols(s) + strlen(OPT(info->elmt_suf2, " ")) + strlen(OPT(info->line_suf, ""))) > ncols) { @@ -1230,68 +1253,65 @@ h5dump_simple_data(FILE *stream, const h5dump_t *info, hid_t container, * break at the end of the each last dimension well that is the * way the dumper did it before */ if (info->arr_linebreak && ctx->cur_elmt){ - if ((ctx->cur_elmt%ctx->size_last_dim) == 0){ + if ((ctx->cur_elmt % ctx->size_last_dim) == 0) ctx->need_prefix = TRUE; - } - if (elmt_counter==ctx->size_last_dim){ + if (elmt_counter == ctx->size_last_dim) { ctx->need_prefix = TRUE; elmt_counter = 0; } } - /* * If the previous element occupied multiple lines and this element * is too long to fit on a line then start this element at the * beginning of the line. */ - if (1==info->line_multi_new && - ctx->prev_multiline && + if (info->line_multi_new == 1 && ctx->prev_multiline && (ctx->cur_column + h5dump_ncols(s) + strlen(OPT(info->elmt_suf2, " ")) + - strlen(OPT(info->line_suf, ""))) > ncols) { + strlen(OPT(info->line_suf, ""))) > ncols) ctx->need_prefix = TRUE; - } /* * If too many elements have already been printed then we need to * start a new line. */ - if (info->line_per_line>0 && ctx->cur_elmt>=info->line_per_line) { + if (info->line_per_line > 0 && ctx->cur_elmt >= info->line_per_line) ctx->need_prefix = TRUE; - } /* * Each OPTIONAL_LINE_BREAK embedded in the rendered string can cause * the data to split across multiple lines. We display the sections * one-at a time. */ - for (secnum=0, multiline=0; - (section=strtok(secnum?NULL:s, OPTIONAL_LINE_BREAK)); + for (secnum = 0, multiline = 0; + (section = strtok(secnum ? NULL : s, OPTIONAL_LINE_BREAK)); secnum++) { /* * If the current section plus possible suffix and end-of-line * information would cause the output to wrap then we need to * start a new line. */ + /* added the info->skip_first because the dumper does not want * this check to happen for the first line */ if ((!info->skip_first || i) && (ctx->cur_column + strlen(section) + strlen(OPT(info->elmt_suf2, " ")) + - strlen(OPT(info->line_suf, ""))) > ncols) { + strlen(OPT(info->line_suf, ""))) > ncols) ctx->need_prefix = 1; - } /* * Print the prefix or separate the beginning of this element * from the previous element. */ if (ctx->need_prefix) { - if (secnum) multiline++; + if (secnum) + multiline++; + h5dump_simple_prefix(stream, info, ctx, i, secnum); - } else if ((i || ctx->continuation) && 0==secnum) { + } else if ((i || ctx->continuation) && secnum == 0) { fputs(OPT(info->elmt_suf2, " "), stream); ctx->cur_column += strlen(OPT(info->elmt_suf2, " ")); } @@ -1299,10 +1319,11 @@ h5dump_simple_data(FILE *stream, const h5dump_t *info, hid_t container, /* Print the section */ fputs(section, stream); ctx->cur_column += strlen(section); - } + ctx->prev_multiline = multiline; } + h5dump_str_close(&buffer); } @@ -1365,86 +1386,89 @@ h5dump_simple_dset(FILE *stream, const h5dump_t *info, hid_t dset, * match the dimensionality of the dataset. */ memset(&ctx, 0, sizeof ctx); - ctx.indent_level = indentlevel; - ctx.indent_level = indentlevel; + ctx.indent_level = indentlevel; + ctx.indent_level = indentlevel; ctx.need_prefix = 1; f_space = H5Dget_space(dset); ctx.ndims = H5Sget_simple_extent_ndims(f_space); - if ((size_t)(ctx.ndims)>NELMTS(sm_size)) return -1; + + if ((size_t)ctx.ndims > NELMTS(sm_size)) + return -1; /* Assume entire data space to be printed */ - for (i=0; i<(hsize_t)(ctx.ndims); i++) ctx.p_min_idx[i] = 0; + for (i = 0; i < (hsize_t)ctx.ndims; i++) + ctx.p_min_idx[i] = 0; + H5Sget_simple_extent_dims(f_space, total_size, NULL); - for (i=0, p_nelmts=1; i<(hsize_t)(ctx.ndims); i++) { + + for (i = 0, p_nelmts = 1; i < (hsize_t)ctx.ndims; i++) p_nelmts *= total_size[i]; - } - if (0==p_nelmts) return 0; /*nothing to print*/ + + if (p_nelmts == 0) + return 0; /*nothing to print*/ + + ctx.size_last_dim = total_size[ctx.ndims - 1]; - ctx.size_last_dim = total_size[ctx.ndims-1]; /* * Determine the strip mine size and allocate a buffer. The strip mine is * a hyperslab whose size is manageable. */ p_type_nbytes = H5Tget_size(p_type); - for (i=ctx.ndims, sm_nbytes=p_type_nbytes; i>0; --i) { - sm_size[i-1] = MIN (total_size[i-1], H5DUMP_BUFSIZE/sm_nbytes); - sm_nbytes *= sm_size[i-1]; - assert(sm_nbytes>0); + + for (i = ctx.ndims, sm_nbytes = p_type_nbytes; i > 0; --i) { + sm_size[i - 1] = MIN (total_size[i - 1], H5DUMP_BUFSIZE / sm_nbytes); + sm_nbytes *= sm_size[i - 1]; + assert(sm_nbytes > 0); } + sm_buf = malloc(sm_nbytes); - sm_nelmts = sm_nbytes/p_type_nbytes; + sm_nelmts = sm_nbytes / p_type_nbytes; sm_space = H5Screate_simple(1, &sm_nelmts, NULL); /* The stripmine loop */ memset(hs_offset, 0, sizeof hs_offset); memset(zero, 0, sizeof zero); - for (elmtno=0; elmtno<p_nelmts; elmtno+=hs_nelmts) { + for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) { /* Calculate the hyperslab size */ - if (ctx.ndims>0) { - for (i=0, hs_nelmts=1; i<(hsize_t)(ctx.ndims); i++) { + if (ctx.ndims > 0) { + for (i = 0, hs_nelmts = 1; i < (hsize_t)ctx.ndims; i++) { hs_size[i] = MIN(total_size[i]-hs_offset[i], sm_size[i]); ctx.p_max_idx[i] = ctx.p_min_idx[i] + hs_size[i]; hs_nelmts *= hs_size[i]; } + H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL); H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL); -#if 0 - dim_n_size = total_size[ctx.ndims-1]; -#endif } else { H5Sselect_all(f_space); H5Sselect_all(sm_space); hs_nelmts = 1; -#if 0 - dim_n_size = 1; -#endif } /* Read the data */ - if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf)<0) { - return -1; - } + if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) < 0) + return -1; /* Print the data */ - flags = ((0==elmtno ? START_OF_DATA : 0) | - (elmtno+hs_nelmts>=p_nelmts ? END_OF_DATA : 0)); + flags = ((elmtno == 0 ? START_OF_DATA : 0) | + (elmtno + hs_nelmts >= p_nelmts ? END_OF_DATA : 0)); h5dump_simple_data(stream, info, dset, &ctx, flags, hs_nelmts, p_type, sm_buf); - /* Calculate the next hyperslab offset */ - for (i=ctx.ndims, carry=1; i>0 && carry; --i) { - ctx.p_min_idx[i-1] = ctx.p_max_idx[i-1]; - hs_offset[i-1] += hs_size[i-1]; - if (hs_offset[i-1]==(hssize_t)(total_size[i-1])) { + for (i = ctx.ndims, carry = 1; i > 0 && carry; --i) { + ctx.p_min_idx[i - 1] = ctx.p_max_idx[i - 1]; + hs_offset[i - 1] += hs_size[i - 1]; + + if (hs_offset[i - 1] == (hssize_t)total_size[i - 1]) hs_offset[i-1] = 0; - } else { + else carry = 0; - } } + ctx.continuation++; } @@ -1454,9 +1478,10 @@ h5dump_simple_dset(FILE *stream, const h5dump_t *info, hid_t dset, putc('\n', stream); fputs(OPT(info->line_sep, ""), stream); } + H5Sclose(sm_space); H5Sclose(f_space); - if (sm_buf) free(sm_buf); + free(sm_buf); return 0; } @@ -1490,23 +1515,27 @@ h5dump_simple_mem(FILE *stream, const h5dump_t *info, hid_t type, * great and the dimensionality of the items selected for printing must * match the dimensionality of the dataset. */ - memset(&ctx, 0, sizeof ctx); - ctx.indent_level = indentlevel; + memset(&ctx, 0, sizeof(ctx)); + ctx.indent_level = indentlevel; ctx.need_prefix = 1; ctx.ndims = H5Sget_simple_extent_ndims(space); - if ((size_t)(ctx.ndims)>NELMTS(ctx.p_min_idx)) return -1; + + if ((size_t)ctx.ndims > NELMTS(ctx.p_min_idx)) + return -1; /* Assume entire data space to be printed */ - for (i=0; i<(hsize_t)(ctx.ndims); i++) ctx.p_min_idx[i] = 0; + for (i = 0; i < (hsize_t)ctx.ndims; i++) + ctx.p_min_idx[i] = 0; + H5Sget_simple_extent_dims(space, ctx.p_max_idx, NULL); - - for (i=0, nelmts=1; (ctx.ndims != 0) && (i<(hsize_t)(ctx.ndims)); i++) { + for (i = 0, nelmts = 1; ctx.ndims != 0 && i < (hsize_t)ctx.ndims; i++) nelmts *= ctx.p_max_idx[i] - ctx.p_min_idx[i]; - } - if (0==nelmts) return 0; /*nothing to print*/ + + if (nelmts == 0) + return 0; /*nothing to print*/ - ctx.size_last_dim = ctx.p_max_idx[ctx.ndims-1]; + ctx.size_last_dim = ctx.p_max_idx[ctx.ndims - 1]; ctx.indent_level = indentlevel; /* Print it */ @@ -1519,7 +1548,7 @@ h5dump_simple_mem(FILE *stream, const h5dump_t *info, hid_t type, putc('\n', stream); fputs(OPT(info->line_sep, ""), stream); } - + return 0; } @@ -1554,8 +1583,8 @@ h5dump_fixtype(hid_t f_type) /* H5T_str_t strpad; */ size = H5Tget_size(f_type); - switch (H5Tget_class(f_type)) { + switch (H5Tget_class(f_type)) { case H5T_INTEGER: /* * Use the smallest native integer type of the same sign as the file @@ -1627,20 +1656,20 @@ h5dump_fixtype(hid_t f_type) H5Tclose(f_memb); if (memb[i] < 0) - goto done; + goto done; /* Get the member dimensions */ ndims[i] = H5Tget_member_dims(f_type, i, dims + i * 4, NULL); assert(ndims[i] >= 0 && ndims[i] <= 4); for (j = 0, nelmts = 1; j < ndims[i]; j++) - nelmts *= dims[i * 4 + j]; + nelmts *= dims[i * 4 + j]; /* Get the member name */ name[i] = H5Tget_member_name(f_type, i); - if (NULL == name[i]) - goto done; + if (name[i] == NULL) + goto done; /* * Compute the new offset so each member is aligned on a byte @@ -1811,30 +1840,30 @@ done: static void *vlcustom_alloc(size_t size, void *info) { - void *ret_value = NULL; - int *mem_used = (int *)info; - size_t extra = MAX(sizeof(void *), sizeof(size_t)); + void *ret_value = NULL; + int *mem_used = (int *)info; + size_t extra = MAX(sizeof(void *), sizeof(size_t)); - if ((ret_value = HDmalloc(extra + size)) != NULL) { - *(size_t *)ret_value = size; - *mem_used += size; - } + if ((ret_value = HDmalloc(extra + size)) != NULL) { + *(size_t *)ret_value = size; + *mem_used += size; + } - ret_value = ((unsigned char *)ret_value) + extra; - return ret_value; + ret_value = ((unsigned char *)ret_value) + extra; + return ret_value; } static void vlcustom_free(void *_mem, void *info) { - if (_mem) { - int *mem_used = (int *)info; - size_t extra = MAX(sizeof(void *), sizeof(size_t)); - unsigned char *mem = ((unsigned char *)_mem) - extra; + if (_mem) { + int *mem_used = (int *)info; + size_t extra = MAX(sizeof(void *), sizeof(size_t)); + unsigned char *mem = ((unsigned char *)_mem) - extra; - *mem_used -= *(size_t *)mem; - HDfree(mem); - } + *mem_used -= *(size_t *)mem; + HDfree(mem); + } } static int @@ -1847,11 +1876,11 @@ h5dump_vlen_dset(FILE *stream, const h5dump_t *info, hid_t dset, hid_t f_space; /*file data space */ hsize_t dims[H5S_MAX_RANK]; /*size of the dimensions */ const char *bad_type; + hsize_t mem_needed; size_t ncols = 80; herr_t ret; /* Print info */ - h5dump_context_t ctx; /*print context */ size_t size; /*size of memory type */ hsize_t p_nelmts; /*total selected elmts */ int mem_used = 0; @@ -1873,23 +1902,15 @@ h5dump_vlen_dset(FILE *stream, const h5dump_t *info, hid_t dset, f_space = H5Dget_space(dset); - /* - * Check that everything looks okay. The dimensionality must not be too - * great and the dimensionality of the items selected for printing must - * match the dimensionality of the dataset. - */ - memset(&ctx, 0, sizeof(ctx)); - ctx.indent_level = indentlevel; - ctx.indent_level = indentlevel; - ctx.need_prefix = 1; - ctx.ndims = H5Sget_simple_extent_ndims(f_space); - - if ((size_t)ctx.ndims > 1) { - printf("Multidimensional variable length datatypes not supported\n"); + if ((size_t)H5Sget_simple_extent_ndims(f_space) > 1) { + fprintf(stream, + "Multidimensional variable length datatypes not supported\n"); ret = FAIL; goto done; } + H5Dvlen_get_buf_size(dset, type, f_space, &mem_needed); + H5Sget_simple_extent_dims(f_space, dims, NULL); rdata = HDmalloc(dims[0] * sizeof(hvl_t)); @@ -1899,7 +1920,6 @@ h5dump_vlen_dset(FILE *stream, const h5dump_t *info, hid_t dset, } ret = H5Dread(dset, type, H5S_ALL, H5S_ALL, xfer_pid, rdata); - ctx.p_min_idx[0] = 0; if (info->line_ncols > 0) ncols = info->line_ncols; @@ -1942,16 +1962,15 @@ recheck: if (!bad_type) bad_type = "H5T_TIME"; default: - printf("Dumper doesn't support %s Variable Length datatype at this time\n", - bad_type); + fprintf(stream, + "Dumper doesn't support %s variable length datatype at this time\n", + bad_type ? bad_type : "(null)"); goto done; } for (i = 0; i < dims[0]; i++) { - unsigned int flags; hsize_t j; - ctx.size_last_dim = rdata[i].len; p_nelmts = rdata[i].len; #define OUTPUT_ELEMENTS(type, fmt) { \ @@ -2010,13 +2029,6 @@ recheck: } } - /* Terminate the output */ - if (ctx.cur_column) { - fputs(OPT(info->line_suf, ""), stream); - putc('\n', stream); - fputs(OPT(info->line_sep, ""), stream); - } - ret = H5Dvlen_reclaim(type, f_space, xfer_pid, rdata); done: @@ -2051,21 +2063,21 @@ h5dump_mem(FILE *stream, const h5dump_t *info, hid_t type, hid_t space, h5dump_t info_dflt; /* Use default values */ - if (!stream) stream = stdout; + if (!stream) + stream = stdout; + if (!info) { memset(&info_dflt, 0, sizeof info_dflt); info = &info_dflt; } /* Check the data space */ - if (H5Sis_simple(space)<=0) return -1; + if (H5Sis_simple(space) <= 0) + return -1; + return h5dump_simple_mem(stream, info, type, space, mem, indentlevel); } - - - - /*************************************************************************/ /*************************************************************************/ /*************************************************************************/ @@ -2082,10 +2094,6 @@ h5dump_mem(FILE *stream, const h5dump_t *info, hid_t type, hid_t space, /*************************************************************************/ /*************************************************************************/ - - - - /*------------------------------------------------------------------------- * Function: indentation * @@ -2098,37 +2106,43 @@ h5dump_mem(FILE *stream, const h5dump_t *info, hid_t type, hid_t space, * Modifications: * *-----------------------------------------------------------------------*/ -void indentation(int x) { - - if(x < nCols) { - while (x>0) { printf(" "); x--; } - } - else { +void indentation(int x) +{ + if (x < nCols) { + while (x-- > 0) + printf(" "); + } else { printf("The indentation exceeds the number of cols. Exiting....\n"); exit(1); } } -/* Print the program name and the version information which is */ -/* defined the same as the HDF5 library version. */ +/*------------------------------------------------------------------------- + * Function: print_version + * + * Purpose: Print the program name and the version information which is + * defined the same as the HDF5 library version. + * + * Return: void + * + * Programmer: unknown + * + * Modifications: + * + *-----------------------------------------------------------------------*/ void print_version(const char *program_name) { printf("%s: Version %u.%u.%u%s%s\n", program_name, H5_VERS_MAJOR, H5_VERS_MINOR, H5_VERS_RELEASE, - H5_VERS_SUBRELEASE[0]?"-":"", H5_VERS_SUBRELEASE); + H5_VERS_SUBRELEASE[0] ? "-" : "", H5_VERS_SUBRELEASE); } - - - - - /* - -THE FUNCTIONS BELOW ARE FROM THE H5FINSHD.C FILE - -*/ + * + * THE FUNCTIONS BELOW ARE FROM THE H5FINSHD.C FILE + * + */ /*------------------------------------------------------------------------- * Function: init_table @@ -2144,16 +2158,14 @@ THE FUNCTIONS BELOW ARE FROM THE H5FINSHD.C FILE * *-----------------------------------------------------------------------*/ void -init_table (table_t** temp) +init_table(table_t** temp) { int i; table_t *table = malloc(sizeof(table_t)); table->size = 20; table->nobjs = 0; - table->objs = (obj_t*) malloc(table->size*sizeof(obj_t)); - for (i = 0; i < table->size; i++) { table->objs[i].objno[0] = table->objs[i].objno[1] = 0; @@ -2161,6 +2173,7 @@ init_table (table_t** temp) table->objs[i].recorded = 0; table->objs[i].objflag = 0; } + *temp = table; } @@ -2177,14 +2190,12 @@ init_table (table_t** temp) void init_prefix(char **prefix, int prefix_len) { - char *temp; - temp = (char *) malloc(prefix_len * sizeof (char)); + char *temp = malloc(prefix_len); + *temp = '\0'; *prefix = temp; } - - /*------------------------------------------------------------------------- * Function: free_table * @@ -2199,16 +2210,11 @@ init_prefix(char **prefix, int prefix_len) * *-----------------------------------------------------------------------*/ void -free_table (table_t **table) +free_table(table_t **table) { - table_t *temp = *table; - if (temp->objs != NULL) { - HDfree(temp->objs); - } - *table = temp; + HDfree((*table)->objs); } - /*------------------------------------------------------------------------- * Function: search_obj * @@ -2224,18 +2230,15 @@ free_table (table_t **table) * *-----------------------------------------------------------------------*/ int -search_obj (table_t *table, unsigned long *objno) +search_obj(table_t *table, unsigned long *objno) { - int i=0, found=0; + int i; - while (i < table->nobjs && !found) - if (table->objs[i].objno[0] == *(objno) && - table->objs[i].objno[1] == *(objno+1) ) found = 1; - else i++; + for (i = 0; i < table->nobjs; i++) + if (table->objs[i].objno[0] == *objno && table->objs[i].objno[1] == *(objno + 1)) + return i; - if (!found) return -1; - else return i; - + return -1; } /*------------------------------------------------------------------------- @@ -2258,7 +2261,8 @@ add_obj (table_t *table, unsigned long *objno, char *objname) if (table->nobjs == table->size) { table->size *= 2; - table->objs = realloc (table->objs, table->size*sizeof(obj_t)); + table->objs = realloc(table->objs, table->size*sizeof(obj_t)); + for (i = table->nobjs; i < table->size; i++) { table->objs[i].objno[0] = table->objs[i].objno[1] = 0; table->objs[i].displayed = 0; @@ -2269,8 +2273,8 @@ add_obj (table_t *table, unsigned long *objno, char *objname) i = table->nobjs++; table->objs[i].objno[0] = *objno; - table->objs[i].objno[1] = *(objno+1); - strcpy (table->objs[i].objname, objname); + table->objs[i].objno[1] = *(objno + 1); + strcpy(table->objs[i].objname, objname); } /*------------------------------------------------------------------------- @@ -2296,93 +2300,99 @@ find_objs(hid_t group, const char *name, void *op_data) int i; find_objs_t *info = (find_objs_t*)op_data; - if (info->threshold > 1) { + if (info->threshold > 1) /*will get an infinite loop if greater than 1*/ - return(FAIL); - } + return FAIL; H5Gget_objinfo(group, name, TRUE, &statbuf); - tmp = (char *) malloc((strlen(info->prefix)+strlen(name)+2)*sizeof(char)); - + tmp = malloc(strlen(info->prefix) + strlen(name) + 2); strcpy(tmp, info->prefix); switch (statbuf.type) { - case H5G_GROUP: - if ((obj=H5Gopen (group, name))>=0) { - - if (info->prefix_len<(int)(strlen(info->prefix)+strlen(name)+2)) { + if ((obj = H5Gopen(group, name)) >= 0) { + if (info->prefix_len < (int)(strlen(info->prefix) + strlen(name) + 2)) { info->prefix_len *= 2; info->prefix = realloc(info->prefix, info->prefix_len * sizeof(char)); - } + } + strcat(strcat(info->prefix,"/"), name); if (statbuf.nlink > info->threshold) { - if (search_obj (info->group_table, statbuf.objno) < 0) { - add_obj (info->group_table, statbuf.objno, info->prefix); - H5Giterate (obj, ".", NULL, find_objs, (void*)info); + if (search_obj(info->group_table, statbuf.objno) < 0) { + add_obj(info->group_table, statbuf.objno, info->prefix); + H5Giterate(obj, ".", NULL, find_objs, (void *)info); } - } else - H5Giterate (obj, ".", NULL, find_objs, (void*)info); + } else { + H5Giterate (obj, ".", NULL, find_objs, (void *)info); + } strcpy(info->prefix, tmp); H5Gclose (obj); - - } else + } else { info->status = 1; + } break; case H5G_DATASET: - strcat(tmp,"/"); strcat(tmp,name); /* absolute name of the data set */ - if (statbuf.nlink > info->threshold && - search_obj (info->dset_table, statbuf.objno) < 0) - add_obj (info->dset_table, statbuf.objno, tmp); - if ((obj=H5Dopen (group, name))>=0) { - type = H5Dget_type (obj); - if (H5Tcommitted(type) > 0 ) { + if (statbuf.nlink > info->threshold && + search_obj(info->dset_table, statbuf.objno) < 0) + add_obj(info->dset_table, statbuf.objno, tmp); + + if ((obj = H5Dopen (group, name)) >= 0) { + type = H5Dget_type(obj); + + if (H5Tcommitted(type) > 0) { H5Gget_objinfo(type, ".", TRUE, &statbuf); + if (search_obj (info->type_table, statbuf.objno) < 0) { - add_obj (info->type_table, statbuf.objno, tmp) ; + add_obj(info->type_table, statbuf.objno, tmp); info->type_table->objs[info->type_table->nobjs - 1].objflag = 0; } } + H5Tclose(type); H5Dclose (obj); - } else + } else { info->status = 1; + } break; case H5G_TYPE: strcat(tmp,"/"); strcat(tmp,name); /* absolute name of the type */ - i = search_obj (info->type_table, statbuf.objno); + i = search_obj(info->type_table, statbuf.objno); + if (i < 0) { - add_obj (info->type_table, statbuf.objno, tmp) ; + add_obj(info->type_table, statbuf.objno, tmp) ; + /* named data type */ info->type_table->objs[info->type_table->nobjs-1].recorded = 1; + /* named data type */ info->type_table->objs[info->type_table->nobjs-1].objflag = 1; } else { strcpy (info->type_table->objs[i].objname, tmp); info->type_table->objs[i].recorded = 1; + /* named data type */ info->type_table->objs[info->type_table->nobjs-1].objflag = 1; } + break; default: break; } - free (tmp); - + free(tmp); return SUCCEED; } @@ -2404,11 +2414,12 @@ dump_table(char* tablename, table_t *table) int i; printf("%s: # of entries = %d\n", tablename,table->nobjs); + for ( i = 0; i < table->nobjs; i++) - printf ("%lu %lu %s %d\n", table->objs[i].objno[0], - table->objs[i].objno[1], - table->objs[i].objname, - table->objs[i].objflag); + printf("%lu %lu %s %d\n", table->objs[i].objno[0], + table->objs[i].objno[1], + table->objs[i].objname, + table->objs[i].objflag); } /*------------------------------------------------------------------------- @@ -2426,10 +2437,8 @@ dump_table(char* tablename, table_t *table) int get_table_idx(table_t *table, unsigned long *objno) { - int idx = -1; + return search_obj(table, objno); - idx = search_obj(table, objno); - return idx; } /*------------------------------------------------------------------------- @@ -2449,7 +2458,7 @@ get_table_idx(table_t *table, unsigned long *objno) int get_tableflag(table_t *table, int idx) { - return(table->objs[idx].objflag); + return table->objs[idx].objflag; } /*------------------------------------------------------------------------- @@ -2470,7 +2479,7 @@ int set_tableflag(table_t *table, int idx) { table->objs[idx].objflag = TRUE; - return(SUCCEED); + return SUCCEED; } /*------------------------------------------------------------------------- @@ -2488,7 +2497,7 @@ set_tableflag(table_t *table, int idx) char * get_objectname(table_t* table, int idx) { - return(strdup(table->objs[idx].objname)); + return strdup(table->objs[idx].objname); } /*------------------------------------------------------------------------- @@ -2534,7 +2543,6 @@ h5dump_fopen(const char *fname, char *drivername, size_t drivername_size) hid_t fapl; } driver[16]; static int ndrivers = 0; - hid_t fid, fapl = H5P_DEFAULT; int drivernum; @@ -2546,7 +2554,7 @@ h5dump_fopen(const char *fname, char *drivername, size_t drivername_size) driver[ndrivers].fapl = H5P_DEFAULT; ndrivers++; -#if defined VERSION13 +#ifdef VERSION13 driver[ndrivers].name = "family"; driver[ndrivers].fapl = fapl = H5Pcreate(H5P_FILE_ACCESS); H5Pset_fapl_family(fapl, 0, H5P_DEFAULT); @@ -2567,28 +2575,29 @@ h5dump_fopen(const char *fname, char *drivername, size_t drivername_size) driver[ndrivers].fapl = fapl = H5Pcreate(H5P_FILE_ACCESS); H5Pset_fapl_stream(fapl, NULL); ndrivers++; -#endif -#endif +#endif /* H5_HAVE_STREAM */ +#endif /* VERSION13 */ } /* Try to open the file using each of the drivers */ - for (drivernum=0; drivernum<ndrivers; drivernum++) { + for (drivernum = 0; drivernum < ndrivers; drivernum++) { H5E_BEGIN_TRY { fid = H5Fopen(fname, H5F_ACC_RDONLY, driver[drivernum].fapl); } H5E_END_TRY; - if (fid >= 0) break; + + if (fid >= 0) + break; } /* Save the driver name */ if (drivername && drivername_size){ - if (fid>=0) { + if (fid >= 0) { strncpy(drivername, driver[drivernum].name, drivername_size); - drivername[drivername_size-1] = '\0'; + drivername[drivername_size - 1] = '\0'; } else { drivername[0] = '\0'; /*no file opened*/ } } - return (fid); -} - + return fid; +} |