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-rw-r--r--tools/lib/h5diff.c4
-rw-r--r--tools/lib/h5tools.c611
-rw-r--r--tools/lib/h5tools.h49
-rw-r--r--tools/lib/h5tools_error.h52
-rw-r--r--tools/lib/h5tools_utils.c159
-rw-r--r--tools/lib/h5tools_utils.h7
-rw-r--r--tools/libtest/h5tools_test_utils.c18
-rw-r--r--tools/src/h5copy/h5copy.c4
-rw-r--r--tools/src/h5dump/h5dump.c198
-rw-r--r--tools/src/h5format_convert/h5format_convert.c2
-rw-r--r--tools/src/h5ls/h5ls.c249
-rw-r--r--tools/src/h5repack/h5repack.c5
-rw-r--r--tools/src/h5repack/h5repack.h4
-rw-r--r--tools/src/h5repack/h5repack_copy.c82
-rw-r--r--tools/src/h5repack/h5repack_main.c208
-rw-r--r--tools/src/h5repack/h5repack_verify.c22
-rw-r--r--tools/src/h5stat/h5stat.c194
-rw-r--r--tools/src/misc/h5clear.c4
-rw-r--r--tools/src/misc/h5mkgrp.c2
-rw-r--r--tools/test/h5format_convert/h5fc_chk_idx.c2
-rw-r--r--tools/test/h5repack/h5repacktst.c10
-rw-r--r--tools/test/h5repack/testfiles/h5repack-help.txt12
-rw-r--r--tools/test/misc/clear_open_chk.c2
23 files changed, 1141 insertions, 759 deletions
diff --git a/tools/lib/h5diff.c b/tools/lib/h5diff.c
index 86726b4..fff0b9a 100644
--- a/tools/lib/h5diff.c
+++ b/tools/lib/h5diff.c
@@ -570,14 +570,14 @@ h5diff(const char *fname1, const char *fname2, const char *objname1, const char
*-------------------------------------------------------------------------
*/
/* open file 1 */
- if((file1_id = h5tools_fopen(fname1, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, (size_t)0)) < 0) {
+ if((file1_id = h5tools_fopen(fname1, H5F_ACC_RDONLY, H5P_DEFAULT, FALSE, NULL, (size_t)0)) < 0) {
parallel_print("h5diff: <%s>: unable to open file\n", fname1);
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "<%s>: unable to open file\n", fname1);
} /* end if */
H5TOOLS_DEBUG("file1_id = %s", fname1);
/* open file 2 */
- if((file2_id = h5tools_fopen(fname2, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, (size_t)0)) < 0) {
+ if((file2_id = h5tools_fopen(fname2, H5F_ACC_RDONLY, H5P_DEFAULT, FALSE, NULL, (size_t)0)) < 0) {
parallel_print("h5diff: <%s>: unable to open file\n", fname2);
H5TOOLS_GOTO_ERROR(H5DIFF_ERR, "<%s>: unable to open file\n", fname2);
} /* end if */
diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c
index 33f1e11..57e537d 100644
--- a/tools/lib/h5tools.c
+++ b/tools/lib/h5tools.c
@@ -29,7 +29,7 @@ int H5tools_INDENT_g = 0;
/* global variables */
-hid_t H5tools_ERR_STACK_g = 0;
+hid_t H5tools_ERR_STACK_g = H5I_INVALID_HID;
hid_t H5tools_ERR_CLS_g = H5I_INVALID_HID;
hid_t H5E_tools_g = H5I_INVALID_HID;
hid_t H5E_tools_min_id_g = H5I_INVALID_HID;
@@ -54,35 +54,41 @@ unsigned long long packed_data_mask; /* mask in which packed bits to display */
int enable_error_stack = 0; /* re-enable error stack; disable=0 enable=1 */
/* sort parameters */
-H5_index_t sort_by = H5_INDEX_NAME; /*sort_by [creation_order | name] */
-H5_iter_order_t sort_order = H5_ITER_INC; /*sort_order [ascending | descending] */
+H5_index_t sort_by = H5_INDEX_NAME; /* sort_by [creation_order | name] */
+H5_iter_order_t sort_order = H5_ITER_INC; /* sort_order [ascending | descending] */
/* module-scoped variables */
static int h5tools_init_g; /* if h5tools lib has been initialized */
-/* Names of VFDs */
-static const char *drivernames[]={
+/* Names of VOL connectors */
+const char *volnames[] = {
+ H5VL_NATIVE_NAME,
+ H5VL_PASSTHRU_NAME,
+};
+
+/* Names of VFDs. These names are always available so that
+ * the tools can emit special messages when a VFD is asked
+ * for by name but is not compiled into the library or is
+ * somehow otherwise not enabled.
+ *
+ */
+const char *drivernames[] = {
"sec2",
+ "direct",
+ "log",
+ "windows",
+ "stdio",
+ "core",
"family",
"split",
"multi",
-#ifdef H5_HAVE_PARALLEL
"mpio",
-#endif /* H5_HAVE_PARALLEL */
+ "ros3",
+ "hdfs",
};
-/* This enum should match the entries in the above drivers_list since they
- * are indexes into the drivers_list array. */
-typedef enum {
- SEC2_IDX = 0
- ,FAMILY_IDX
- ,SPLIT_IDX
- ,MULTI_IDX
-#ifdef H5_HAVE_PARALLEL
- ,MPIO_IDX
-#endif /* H5_HAVE_PARALLEL */
-} driver_idx;
-#define NUM_DRIVERS (sizeof(drivernames) / sizeof(drivernames[0]))
+#define NUM_VOLS (sizeof(volnames) / sizeof(volnames[0]))
+#define NUM_DRIVERS (sizeof(drivernames) / sizeof(drivernames[0]))
/*-------------------------------------------------------------------------
* Function: h5tools_init
@@ -131,16 +137,19 @@ h5tools_init(void)
void
h5tools_close(void)
{
- H5E_auto2_t tools_func;
- void *tools_edata;
+ H5E_auto2_t tools_func;
+ void *tools_edata;
+
if (h5tools_init_g) {
/* special case where only data is output to stdout */
- if((rawoutstream == NULL) && rawdatastream && (rawdatastream == stdout))
+ if ((rawoutstream == NULL) && rawdatastream && (rawdatastream == stdout))
HDfprintf(rawdatastream, "\n");
H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
- if(tools_func!=NULL)
+
+ if (tools_func)
H5Eprint2(H5tools_ERR_STACK_g, rawerrorstream);
+
if (rawattrstream && rawattrstream != stdout) {
if (fclose(rawattrstream))
perror("closing rawattrstream");
@@ -425,189 +434,521 @@ h5tools_set_error_file(const char *fname, int is_bin)
}
/*-------------------------------------------------------------------------
- * Function: h5tools_get_fapl
+ * Function: h5tools_set_vfd_fapl
+ *
+ * Purpose: Given a VFL driver name, sets the appropriate driver on the
+ * specified FAPL.
*
- * Purpose: Get a FAPL for a given VFL driver name.
+ * TODO: Add handling for Windows VFD.
*
* Return: positive - succeeded
* negative - failed
*-------------------------------------------------------------------------
*/
-static hid_t
-h5tools_get_fapl(hid_t fapl, const char *driver, unsigned *drivernum)
+static herr_t
+h5tools_set_vfd_fapl(hid_t fapl, h5tools_get_fapl_info_t *get_info)
{
- hid_t new_fapl = H5I_INVALID_HID; /* Copy of file access property list passed in, or new property list */
herr_t ret_value = SUCCEED;
- /* Make a copy of the FAPL, for the file open call to use, eventually */
- if (fapl == H5P_DEFAULT) {
- if ((new_fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
- H5TOOLS_GOTO_ERROR(FAIL, "H5Pcreate failed");
- } /* end if */
- else {
- if ((new_fapl = H5Pcopy(fapl)) < 0)
- H5TOOLS_GOTO_ERROR(FAIL, "H5Pcopy failed");
- } /* end else */
-
- /* Determine which driver the user wants to open the file with. Try
- * that driver. If it can't open it, then fail. */
- if (!HDstrcmp(driver, drivernames[SEC2_IDX])) {
- /* SEC2 driver */
- if (H5Pset_fapl_sec2(new_fapl) < 0)
+ /* Currently, only retrieving a VFD by name is supported */
+ if (GET_VFD_BY_NAME != get_info->get_type)
+ H5TOOLS_GOTO_ERROR(FAIL, "unsupported VFD retrieval type; only retrieval by name is supported");
+
+ /*
+ * Determine which driver the user wants to open the file with.
+ * Try that driver; if it can't open the file, then fail.
+ */
+ if (!HDstrcmp(get_info->u.name, drivernames[SEC2_VFD_IDX])) {
+ /* SEC2 Driver */
+ if (H5Pset_fapl_sec2(fapl) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Pset_fapl_sec2 failed");
+ }
+ else if (!HDstrcmp(get_info->u.name, drivernames[DIRECT_VFD_IDX])) {
+#ifdef H5_HAVE_DIRECT
+ /* Direct Driver */
+ if (H5Pset_fapl_direct(fapl, 1024, 4096, 8 * 4096) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "H5Pset_fapl_direct failed");
+#else
+ H5TOOLS_GOTO_ERROR(FAIL, "Direct VFD is not enabled");
+#endif
+ }
+ else if (!HDstrcmp(get_info->u.name, drivernames[LOG_VFD_IDX])) {
+ unsigned long long log_flags = H5FD_LOG_LOC_IO | H5FD_LOG_ALLOC;
+
+ /* Log Driver */
+ if (H5Pset_fapl_log(fapl, NULL, log_flags, (size_t) 0) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "H5Pset_fapl_sec2 failed");
+ }
+ else if (!HDstrcmp(get_info->u.name, drivernames[WINDOWS_VFD_IDX])) {
+#ifdef H5_HAVE_WINDOWS
- if (drivernum)
- *drivernum = SEC2_IDX;
+#else
+ H5TOOLS_GOTO_ERROR(FAIL, "Windows VFD is not enabled");
+#endif
+ }
+ else if (!HDstrcmp(get_info->u.name, drivernames[STDIO_VFD_IDX])) {
+ /* Stdio Driver */
+ if (H5Pset_fapl_stdio(fapl) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "H5Pset_fapl_stdio failed");
}
- else if (!HDstrcmp(driver, drivernames[FAMILY_IDX])) {
+ else if (!HDstrcmp(get_info->u.name, drivernames[CORE_VFD_IDX])) {
+ /* Core Driver */
+ if (H5Pset_fapl_core(fapl, (size_t) H5_MB, TRUE) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "H5Pset_fapl_stdio failed");
+ }
+ else if (!HDstrcmp(get_info->u.name, drivernames[FAMILY_VFD_IDX])) {
/* FAMILY Driver */
/* Set member size to be 0 to indicate the current first member size
* is the member size.
*/
- if (H5Pset_fapl_family(new_fapl, (hsize_t) 0, H5P_DEFAULT) < 0)
+ if (H5Pset_fapl_family(fapl, (hsize_t) 0, H5P_DEFAULT) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Pset_fapl_family failed");
-
- if (drivernum)
- *drivernum = FAMILY_IDX;
}
- else if (!HDstrcmp(driver, drivernames[SPLIT_IDX])) {
+ else if (!HDstrcmp(get_info->u.name, drivernames[SPLIT_VFD_IDX])) {
/* SPLIT Driver */
- if (H5Pset_fapl_split(new_fapl, "-m.h5", H5P_DEFAULT, "-r.h5", H5P_DEFAULT) < 0)
+ if (H5Pset_fapl_split(fapl, "-m.h5", H5P_DEFAULT, "-r.h5", H5P_DEFAULT) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Pset_fapl_split failed");
-
- if (drivernum)
- *drivernum = SPLIT_IDX;
}
- else if (!HDstrcmp(driver, drivernames[MULTI_IDX])) {
+ else if (!HDstrcmp(get_info->u.name, drivernames[MULTI_VFD_IDX])) {
/* MULTI Driver */
- if (H5Pset_fapl_multi(new_fapl, NULL, NULL, NULL, NULL, TRUE) < 0)
+ if (H5Pset_fapl_multi(fapl, NULL, NULL, NULL, NULL, TRUE) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Pset_fapl_multi failed");
-
- if(drivernum)
- *drivernum = MULTI_IDX;
}
+ else if (!HDstrcmp(get_info->u.name, drivernames[MPIO_VFD_IDX])) {
#ifdef H5_HAVE_PARALLEL
- else if(!HDstrcmp(driver, drivernames[MPIO_IDX])) {
int mpi_initialized, mpi_finalized;
/* MPI-I/O Driver */
+
/* check if MPI is available. */
MPI_Initialized(&mpi_initialized);
MPI_Finalized(&mpi_finalized);
- if(mpi_initialized && !mpi_finalized) {
- if(H5Pset_fapl_mpio(new_fapl, MPI_COMM_WORLD, MPI_INFO_NULL) < 0)
+ if (mpi_initialized && !mpi_finalized) {
+ if (H5Pset_fapl_mpio(fapl, MPI_COMM_WORLD, MPI_INFO_NULL) < 0)
H5TOOLS_GOTO_ERROR(FAIL, "H5Pset_fapl_mpio failed");
- if(drivernum)
- *drivernum = MPIO_IDX;
} /* end if */
- }
+#else
+ H5TOOLS_GOTO_ERROR(FAIL, "MPI-I/O VFD is not enabled");
#endif /* H5_HAVE_PARALLEL */
+ }
+ else if (!HDstrcmp(get_info->u.name, drivernames[ROS3_VFD_IDX])) {
+#ifdef H5_HAVE_ROS3_VFD
+ if (!get_info->info)
+ H5TOOLS_GOTO_ERROR(FAIL, "Read-only S3 VFD info is invalid");
+ if (H5Pset_fapl_ros3(fapl, (H5FD_ros3_fapl_t *)get_info->info) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "H5Pset_fapl_ros3() failed");
+#else
+ H5TOOLS_GOTO_ERROR(FAIL, "Read-only S3 VFD is not enabled");
+#endif
+ }
+ else if (!HDstrcmp(get_info->u.name, drivernames[HDFS_VFD_IDX])) {
+#ifdef H5_HAVE_LIBHDFS
+ if (!get_info->info)
+ H5TOOLS_GOTO_ERROR(FAIL, "HDFS VFD info is invalid");
+ if (H5Pset_fapl_hdfs(fapl, (H5FD_hdfs_fapl_t *)get_info->info) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "H5Pset_fapl_hdfs() failed");
+#else
+ H5TOOLS_GOTO_ERROR(FAIL, "The HDFS VFD is not enabled");
+#endif
+ }
+ else
+ H5TOOLS_GOTO_ERROR(FAIL, "invalid VFD name");
+
+done:
+ return ret_value;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: h5tools_set_vol_fapl
+ *
+ * Purpose: Given a VOL connector name or ID, sets the appropriate
+ * connector on the specified FAPL.
+ *
+ * Return: positive - succeeded
+ * negative - failed
+ *-------------------------------------------------------------------------
+ */
+static herr_t
+h5tools_set_vol_fapl(hid_t fapl, h5tools_get_fapl_info_t *get_info)
+{
+ htri_t connector_is_registered;
+ hid_t connector_id = H5I_INVALID_HID;
+ herr_t ret_value = SUCCEED;
+
+ if (GET_VOL_BY_NAME != get_info->get_type && GET_VOL_BY_ID != get_info->get_type)
+ H5TOOLS_GOTO_ERROR(FAIL, "invalid VOL retrieval type");
+
+ if (GET_VOL_BY_NAME == get_info->get_type) {
+ /* Retrieve VOL connector by name */
+
+ if ((connector_is_registered = H5VLis_connector_registered_by_name(get_info->u.name)) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "can't check if VOL connector is registered");
+ if (connector_is_registered) {
+ if ((connector_id = H5VLget_connector_id_by_name(get_info->u.name)) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "can't get VOL connector ID");
+ }
+ else {
+ /* Check for VOL connectors that ship with the library */
+ if (!strcmp(get_info->u.name, H5VL_NATIVE_NAME)) {
+ connector_id = H5VL_NATIVE;
+ }
+ else if (!strcmp(get_info->u.name, H5VL_PASSTHRU_NAME)) {
+ connector_id = H5VL_PASSTHRU;
+ }
+ else {
+ if ((connector_id = H5VLregister_connector_by_name(get_info->u.name, H5P_DEFAULT)) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "can't register VOL connector");
+ }
+ }
+ }
+ else {
+ /* Retrieve VOL connector by ID */
+
+ if ((connector_is_registered = H5VLis_connector_registered_by_value((H5VL_class_value_t) get_info->u.id)) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "can't check if VOL connector is registered");
+ if (connector_is_registered) {
+ if ((connector_id = H5VLget_connector_id_by_value((H5VL_class_value_t) get_info->u.id)) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "can't get VOL connector ID");
+ }
+ else {
+ /* Check for VOL connectors that ship with the library */
+ if (get_info->u.id == H5VL_NATIVE_VALUE) {
+ connector_id = H5VL_NATIVE;
+ }
+ else if (get_info->u.id == H5VL_PASSTHRU_VALUE) {
+ connector_id = H5VL_PASSTHRU;
+ }
+ else {
+ if ((connector_id = H5VLregister_connector_by_value((H5VL_class_value_t) get_info->u.id, H5P_DEFAULT)) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "can't register VOL connector");
+ }
+ }
+ }
+
+ if (H5Pset_vol(fapl, connector_id, get_info->info) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "can't set VOL connector on FAPL");
+
+done:
+ if (ret_value < 0) {
+ if (connector_id >= 0 && H5Idec_ref(connector_id) < 0)
+ H5TOOLS_ERROR(FAIL, "failed to decrement refcount on VOL connector ID");
+ }
+
+ return ret_value;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: h5tools_get_fapl
+ *
+ * Purpose: Get a FAPL for a given VFL driver name, VOL connector name
+ * or VOL connector ID.
+ *
+ * Return: positive - succeeded
+ * negative - failed
+ *-------------------------------------------------------------------------
+ */
+hid_t
+h5tools_get_fapl(hid_t fapl, h5tools_get_fapl_info_t *get_info)
+{
+ hid_t new_fapl = H5I_INVALID_HID;
+ hid_t ret_value = H5I_INVALID_HID;
+
+ if (fapl < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "invalid FAPL");
+ if (!get_info)
+ H5TOOLS_GOTO_ERROR(FAIL, "invalid FAPL retrieval info");
+
+ /* Make a copy of the FAPL if necessary, or create a FAPL if
+ * H5P_DEFAULT is specified. */
+ if (H5P_DEFAULT == fapl) {
+ if ((new_fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
+ H5TOOLS_GOTO_ERROR(H5I_INVALID_HID, "H5Pcreate failed");
+ } /* end if */
+ else {
+ if ((new_fapl = H5Pcopy(fapl)) < 0)
+ H5TOOLS_GOTO_ERROR(H5I_INVALID_HID, "H5Pcopy failed");
+ }
+
+ if (GET_VFD_BY_NAME == get_info->get_type) {
+ if (h5tools_set_vfd_fapl(new_fapl, get_info) < 0)
+ H5TOOLS_GOTO_ERROR(H5I_INVALID_HID, "failed to set VFD on FAPL");
+ }
+ else if (GET_VOL_BY_NAME == get_info->get_type || GET_VOL_BY_ID == get_info->get_type) {
+ if (h5tools_set_vol_fapl(new_fapl, get_info) < 0)
+ H5TOOLS_GOTO_ERROR(H5I_INVALID_HID, "failed to set VOL on FAPL");
+ }
else
- ret_value = -1;
+ H5TOOLS_GOTO_ERROR(H5I_INVALID_HID, "invalid FAPL retrieval type");
+
+ ret_value = new_fapl;
done:
- if((new_fapl != H5P_DEFAULT) && (ret_value < 0)) {
+ if ((new_fapl >= 0) && (ret_value < 0)) {
H5Pclose(new_fapl);
new_fapl = H5I_INVALID_HID;
}
- return(new_fapl);
+ return ret_value;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: h5tools_get_vfd_name
+ *
+ * Purpose: Given a FAPL, retrieves the name of the VFL driver set on it
+ * if using a native-terminal VOL connector. If a
+ * non-native-terminal VOL connector is set on the FAPL, the
+ * first byte of the returned driver name will be set to the null
+ * terminator.
+ *
+ * Return: SUCCEED/FAIL
+ *-------------------------------------------------------------------------
+ */
+herr_t
+h5tools_get_vfd_name(hid_t fapl_id, char *drivername, size_t drivername_size)
+{
+ hid_t fapl_vol_id = H5I_INVALID_HID;
+ herr_t ret_value = SUCCEED;
+
+ if (fapl_id < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "invalid FAPL");
+ if (!drivername)
+ H5TOOLS_GOTO_ERROR(FAIL, "drivername is NULL");
+ if (drivername && !drivername_size)
+ H5TOOLS_GOTO_ERROR(FAIL, "drivername_size must be non-zero");
+
+ /* Initialize the driver name */
+ drivername[0] = '\0';
+
+ if (fapl_id == H5P_DEFAULT)
+ fapl_id = H5P_FILE_ACCESS_DEFAULT;
+
+ /* Retrieve ID of the VOL connector set on the FAPL */
+ if (H5Pget_vol_id(fapl_id, &fapl_vol_id) < 0)
+ H5TOOLS_ERROR(FAIL, "failed to retrieve VOL ID from FAPL");
+
+ /* TODO: For now, we have no way of determining if an arbitrary
+ * VOL connector is native-terminal. */
+ if (fapl_vol_id == H5VL_NATIVE) {
+ const char *driver_name;
+ hid_t driver_id;
+
+ if ((driver_id = H5Pget_driver(fapl_id)) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "failed to retrieve VFL driver ID from FAPL");
+
+ if (driver_id == H5FD_SEC2)
+ driver_name = drivernames[SEC2_VFD_IDX];
+#ifdef H5_HAVE_DIRECT
+ else if (driver_id == H5FD_DIRECT)
+ driver_name = drivernames[DIRECT_VFD_IDX];
+#endif
+ else if (driver_id == H5FD_LOG)
+ driver_name = drivernames[LOG_VFD_IDX];
+#ifdef H5_HAVE_WINDOWS
+ else if (driver_id == H5FD_WINDOWS)
+ driver_name = drivernames[WINDOWS_VFD_IDX];
+#endif
+ else if (driver_id == H5FD_STDIO)
+ driver_name = drivernames[STDIO_VFD_IDX];
+ else if (driver_id == H5FD_CORE)
+ driver_name = drivernames[CORE_VFD_IDX];
+ else if (driver_id == H5FD_FAMILY)
+ driver_name = drivernames[FAMILY_VFD_IDX];
+ else if (driver_id == H5FD_MULTI)
+ driver_name = drivernames[MULTI_VFD_IDX];
+#ifdef H5_HAVE_PARALLEL
+ else if (driver_id == H5FD_MPIO)
+ driver_name = drivernames[MPIO_VFD_IDX];
+#endif
+#ifdef H5_HAVE_ROS3_VFD
+ else if (driver_id == H5FD_ROS3)
+ driver_name = drivernames[ROS3_VFD_IDX];
+#endif
+#ifdef H5_HAVE_LIBHDFS
+ else if (driver_id == H5FD_HDFS)
+ driver_name = drivernames[HDFS_VFD_IDX];
+#endif
+ else
+ driver_name = "unknown";
+
+ HDstrncpy(drivername, driver_name, drivername_size);
+ drivername[drivername_size - 1] = '\0';
+ }
+
+done:
+ /* Close retrieved VOL ID */
+ if (fapl_vol_id >= 0)
+ if (H5VLclose(fapl_vol_id) < 0)
+ H5TOOLS_ERROR(FAIL, "failed to close VOL ID");
+
+ return ret_value;
}
/*-------------------------------------------------------------------------
* Function: h5tools_fopen
*
- * Purpose: Loop through the various types of VFL drivers trying to open FNAME.
- * If the HDF5 library is version 1.2 or less, then we have only the SEC2
- * driver to try out. If the HDF5 library is greater than version 1.2,
- * then we have the FAMILY, SPLIT, and MULTI drivers to play with.
+ * Purpose: Opens file FNAME using the specified flags and FAPL.
+ *
+ * The 'use_specific_driver' parameter is used to control the
+ * VFD/VOL connector that this routine uses to open the file
+ * with. If 'use_specific_driver' is set to TRUE, this routine
+ * assumes that the caller has already set a specific VFD or VOL
+ * connector on the given FAPL and will attempt to directly use
+ * the FAPL for opening the file. We assume that the caller knows
+ * what they are doing; if the file is unable to be opened using
+ * that FAPL, this routine will return H5I_INVALID_HID.
*
- * If DRIVER is non-NULL, then it will try to open the file with that
- * driver first. We assume that the user knows what they are doing so, if
- * we fail, then we won't try other file drivers.
+ * However, if 'use_specific_driver' is set to FALSE, this
+ * routine assumes that the caller HAS NOT set a specific VFD or
+ * VOL connector on the given FAPL and will instead loop through
+ * the various available VFL drivers and VOL connectors trying to
+ * open FNAME.
+ *
+ * The list of available VFL drivers is as follows:
+ * - If the HDF5 library is version 1.2 or less, then we have
+ * only the SEC2 driver to try out.
+ * - If the HDF5 library is greater than version 1.2, then we
+ * have the FAMILY, SPLIT, and MULTI drivers to play with.
+ *
+ * The list of available VOL connectors is as follows:
+ * - "Native" VOL connector
+ * - Pass-through VOL connector
*
* Return:
- * On success, returns a file id for the opened file. If DRIVERNAME is
- * non-null then the first DRIVERNAME_SIZE-1 characters of the driver
- * name are copied into the DRIVERNAME array and null terminated.
+ * On success, returns a file ID for the opened file. If DRIVERNAME is
+ * non-null and the native VOL connector is the terminal connector,
+ * then the first DRIVERNAME_SIZE-1 characters of the driver name are
+ * copied into the DRIVERNAME array and null terminated. If the
+ * native VOL connector is NOT the terminal connector, then the first
+ * byte of DRIVERNAME will be set to the null terminator.
*
- * Otherwise, the function returns FAIL. If DRIVERNAME is non-null then
- * the first byte is set to the null terminator.
+ * On failure, the function returns H5I_INVALID_HID and DRIVERNAME
+ * will not be set.
*-------------------------------------------------------------------------
*/
hid_t
-h5tools_fopen(const char *fname, unsigned flags, hid_t fapl, const char *driver,
+h5tools_fopen(const char *fname, unsigned flags, hid_t fapl, hbool_t use_specific_driver,
char *drivername, size_t drivername_size)
{
- unsigned drivernum;
- hid_t fid = FAIL;
- hid_t my_fapl = H5P_DEFAULT;
-
- if (driver && *driver) {
- /* Get the correct FAPL for the given driver */
- if ((my_fapl = h5tools_get_fapl(fapl, driver, &drivernum)) < 0)
- goto done;
+ hid_t fid = H5I_INVALID_HID;
+ hid_t tmp_vol_fapl = H5I_INVALID_HID;
+ hid_t tmp_vfd_fapl = H5I_INVALID_HID;
+ hid_t used_fapl = H5I_INVALID_HID;
+ unsigned volnum, drivernum;
+ hid_t ret_value = H5I_INVALID_HID;
- /* allow error stack display if enable-error-stack has optional arg number */
- if (enable_error_stack > 1) {
- fid = H5Fopen(fname, flags, my_fapl);
- }
- else {
- H5E_BEGIN_TRY {
- fid = H5Fopen(fname, flags, my_fapl);
- } H5E_END_TRY;
- }
-
- if (fid == FAIL)
- goto done;
+ /*
+ * First try to open the file using just the given FAPL. If the
+ * HDF5_VOL_CONNECTOR environment variable has been set, this will
+ * allow us to attempt to open the file using the specified VOL
+ * connector before we go looping through all available ones,
+ * which will override any VOL connector set by use of the
+ * environment variable.
+ */
+ /* Allow error stack display if --enable-error-stack has optional arg number */
+ if (enable_error_stack > 1) {
+ fid = H5Fopen(fname, flags, fapl);
}
else {
- /* Try to open the file using each of the drivers */
- for (drivernum = 0; drivernum < NUM_DRIVERS; drivernum++) {
- /* Get the correct FAPL for the given driver */
- if((my_fapl = h5tools_get_fapl(fapl, drivernames[drivernum], NULL)) < 0)
- goto done;
-
- /* allow error stack display if enable-error-stack has optional arg number */
- if (enable_error_stack > 1) {
- fid = H5Fopen(fname, flags, my_fapl);
- }
- else {
- H5E_BEGIN_TRY {
- fid = H5Fopen(fname, flags, my_fapl);
- } H5E_END_TRY;
- }
+ H5E_BEGIN_TRY {
+ fid = H5Fopen(fname, flags, fapl);
+ } H5E_END_TRY;
+ }
- if (fid != FAIL)
- break;
- else {
- /* Close the FAPL */
- H5Pclose(my_fapl);
- my_fapl = H5P_DEFAULT;
- } /* end else */
- }
+ /* If we succeeded in opening the file, we're done. */
+ if (fid >= 0) {
+ used_fapl = fapl;
+ H5TOOLS_GOTO_DONE(fid);
}
- /* Save the driver name */
- if (drivername && drivername_size) {
- if (fid != FAIL) {
- HDstrncpy(drivername, drivernames[drivernum], drivername_size);
- drivername[drivername_size - 1] = '\0';
+ /*
+ * If we failed to open the file and the caller specified 'use_specific_driver'
+ * as TRUE, we should return failure now since the file couldn't be opened with
+ * the VFL driver/VOL connector that was set on the FAPL by the caller.
+ */
+ if (fid < 0 && use_specific_driver)
+ H5TOOLS_GOTO_ERROR(H5I_INVALID_HID, "failed to open file using specified FAPL");
+
+ /*
+ * As a final resort, try to open the file using each of the available
+ * VOL connectors. When the native VOL connector is the current "terminal"
+ * connector being looked at, also try using each of the available VFL drivers.
+ */
+ for (volnum = 0; volnum < NUM_VOLS; volnum++) {
+ h5tools_get_fapl_info_t get_vol_info;
+
+ get_vol_info.get_type = GET_VOL_BY_NAME;
+ get_vol_info.info = NULL;
+ get_vol_info.u.name = volnames[volnum];
+
+ /* Get a FAPL for the current VOL connector */
+ if ((tmp_vol_fapl = h5tools_get_fapl(fapl, &get_vol_info)) < 0)
+ continue;
+
+ /* TODO: For now, we have no way of determining if an arbitrary
+ * VOL connector is native-terminal. */
+ if (NATIVE_VOL_IDX == volnum) {
+ /*
+ * If using the native VOL connector, or a VOL connector which has the
+ * native connector as its terminal connector, loop through all of the
+ * VFL drivers as well.
+ */
+ for (drivernum = 0; drivernum < NUM_DRIVERS; drivernum++) {
+ h5tools_get_fapl_info_t get_vfd_info;
+
+ /* Skip the log VFD as it prints out to standard out */
+ if (drivernum == LOG_VFD_IDX)
+ continue;
+
+ get_vfd_info.get_type = GET_VFD_BY_NAME;
+ get_vfd_info.info = NULL;
+ get_vfd_info.u.name = drivernames[drivernum];
+
+ /* Using the current VOL FAPL as a base, get the correct FAPL for the given VFL driver */
+ if ((tmp_vfd_fapl = h5tools_get_fapl(tmp_vol_fapl, &get_vfd_info)) < 0)
+ continue;
+
+ if ((fid = h5tools_fopen(fname, flags, tmp_vfd_fapl, TRUE, drivername, drivername_size)) >= 0) {
+ used_fapl = tmp_vfd_fapl;
+ H5TOOLS_GOTO_DONE(fid);
+ }
+ else {
+ /* Close the temporary VFD FAPL */
+ H5Pclose(tmp_vfd_fapl);
+ tmp_vfd_fapl = H5I_INVALID_HID;
+ }
+ }
}
else {
- /*no file opened*/
- drivername[0] = '\0';
+ if ((fid = h5tools_fopen(fname, flags, tmp_vol_fapl, TRUE, drivername, drivername_size)) >= 0) {
+ used_fapl = tmp_vol_fapl;
+ H5TOOLS_GOTO_DONE(fid);
+ }
+ else {
+ /* Close the temporary VOL FAPL */
+ H5Pclose(tmp_vol_fapl);
+ tmp_vol_fapl = H5I_INVALID_HID;
+ }
}
}
+ /* File was unable to be opened at all */
+ ret_value = H5I_INVALID_HID;
+
done:
- if(my_fapl != H5P_DEFAULT)
- H5Pclose(my_fapl);
+ /* Save the driver name if using a native-terminal VOL connector */
+ if (drivername && drivername_size && ret_value >= 0)
+ if (used_fapl >= 0 && h5tools_get_vfd_name(used_fapl, drivername, drivername_size) < 0)
+ H5TOOLS_ERROR(H5I_INVALID_HID, "failed to retrieve name of VFD used to open file");
- return fid;
+ if (tmp_vfd_fapl >= 0)
+ H5Pclose(tmp_vfd_fapl);
+ if (tmp_vol_fapl >= 0)
+ H5Pclose(tmp_vol_fapl);
+
+ return ret_value;
}
/*-------------------------------------------------------------------------
diff --git a/tools/lib/h5tools.h b/tools/lib/h5tools.h
index 9440e7a..11b0a1d 100644
--- a/tools/lib/h5tools.h
+++ b/tools/lib/h5tools.h
@@ -539,6 +539,52 @@ typedef struct h5tools_context_t {
int display_char; /* */
} h5tools_context_t;
+typedef enum {
+ GET_VFD_BY_NAME,
+ GET_VOL_BY_NAME,
+ GET_VOL_BY_ID
+} h5tools_get_fapl_type_t;
+
+typedef struct h5tools_get_fapl_info_t {
+ h5tools_get_fapl_type_t get_type;
+
+ /* Pointer to information to be passed to the driver/connector for its setup */
+ const void *info;
+
+ /* Field specifying either the driver's/connector's name, or the driver's/connector's ID */
+ union {
+ const char *name;
+ long id;
+ } u;
+} h5tools_get_fapl_info_t;
+
+extern const char *volnames[];
+extern const char *drivernames[];
+
+/* This enum should match the entries in the above 'volnames'
+ * since they are indices into the 'volnames' array. */
+typedef enum {
+ NATIVE_VOL_IDX = 0,
+ PASS_THROUGH_VOL_IDX,
+} vol_idx;
+
+/* This enum should match the entries in the above 'drivernames'
+ * since they are indices into the 'drivernames' array. */
+typedef enum {
+ SEC2_VFD_IDX = 0,
+ DIRECT_VFD_IDX,
+ LOG_VFD_IDX,
+ WINDOWS_VFD_IDX,
+ STDIO_VFD_IDX,
+ CORE_VFD_IDX,
+ FAMILY_VFD_IDX,
+ SPLIT_VFD_IDX,
+ MULTI_VFD_IDX,
+ MPIO_VFD_IDX,
+ ROS3_VFD_IDX,
+ HDFS_VFD_IDX,
+} driver_idx;
+
/* The following include, h5tools_str.h, must be after the
* above stucts are defined. There is a dependency in the following
* include that hasn't been identified yet. */
@@ -591,8 +637,9 @@ H5TOOLS_DLL int h5tools_set_attr_output_file(const char *fname, int is_bin);
H5TOOLS_DLL int h5tools_set_input_file(const char *fname, int is_bin);
H5TOOLS_DLL int h5tools_set_output_file(const char *fname, int is_bin);
H5TOOLS_DLL int h5tools_set_error_file(const char *fname, int is_bin);
+H5TOOLS_DLL hid_t h5tools_get_fapl(hid_t fapl, h5tools_get_fapl_info_t *get_info);
H5TOOLS_DLL hid_t h5tools_fopen(const char *fname, unsigned flags, hid_t fapl,
- const char *driver, char *drivername, size_t drivername_len);
+ hbool_t use_specific_driver, char *drivername, size_t drivername_size);
H5TOOLS_DLL hid_t h5tools_get_little_endian_type(hid_t type);
H5TOOLS_DLL hid_t h5tools_get_big_endian_type(hid_t type);
H5TOOLS_DLL htri_t h5tools_detect_vlen(hid_t tid);
diff --git a/tools/lib/h5tools_error.h b/tools/lib/h5tools_error.h
index 4e2e935..764fb91 100644
--- a/tools/lib/h5tools_error.h
+++ b/tools/lib/h5tools_error.h
@@ -101,14 +101,16 @@ do {
* H5TOOLS_PUSH_ERROR macro, used to push an error to an error stack. Not meant to
* be called directly.
*/
-#define H5TOOLS_PUSH_ERROR(estack_id, err_cls, maj_err_id, min_err_id, ...) \
-do { \
- if (estack_id >= 0 && err_cls >= 0) \
- H5Epush2(estack_id, __FILE__, FUNC, __LINE__, err_cls, maj_err_id, min_err_id, __VA_ARGS__); \
- else { \
- HDfprintf(stderr, __VA_ARGS__); \
- HDfprintf(stderr, "\n"); \
- } \
+#define H5TOOLS_PUSH_ERROR(estack_id, err_cls, maj_err_id, min_err_id, ...) \
+do { \
+ if (enable_error_stack > 0) { \
+ if (estack_id >= 0 && err_cls >= 0) \
+ H5Epush2(estack_id, __FILE__, FUNC, __LINE__, err_cls, maj_err_id, min_err_id, __VA_ARGS__); \
+ else { \
+ HDfprintf(stderr, __VA_ARGS__); \
+ HDfprintf(stderr, "\n"); \
+ } \
+ } \
} while(0)
/*
@@ -167,30 +169,30 @@ do {
#ifdef H5_TOOLS_DEBUG
-#define H5TOOLS_START_DEBUG(...) \
-do { \
- H5tools_INDENT_g += 2; \
+#define H5TOOLS_START_DEBUG(...) \
+do { \
+ H5tools_INDENT_g += 2; \
HDfprintf(stderr, "%*sENTER %s:%d in %s()...", H5tools_INDENT_g, "", __FILE__, __LINE__, FUNC); \
- HDfprintf(stderr, __VA_ARGS__); \
- HDfprintf(stderr, "\n"); \
- HDfflush(stderr); \
+ HDfprintf(stderr, __VA_ARGS__); \
+ HDfprintf(stderr, "\n"); \
+ HDfflush(stderr); \
} while(0)
-#define H5TOOLS_DEBUG(...) \
-do { \
+#define H5TOOLS_DEBUG(...) \
+do { \
HDfprintf(stderr, "%*s %s:%d in %s()...", H5tools_INDENT_g, "", __FILE__, __LINE__, FUNC); \
- HDfprintf(stderr, __VA_ARGS__); \
- HDfprintf(stderr, "\n"); \
- HDfflush(stderr); \
+ HDfprintf(stderr, __VA_ARGS__); \
+ HDfprintf(stderr, "\n"); \
+ HDfflush(stderr); \
} while(0)
-#define H5TOOLS_ENDDEBUG(...) \
-do { \
+#define H5TOOLS_ENDDEBUG(...) \
+do { \
HDfprintf(stderr, "%*sEXIT %s:%d in %s()...", H5tools_INDENT_g, "", __FILE__, __LINE__, FUNC); \
- HDfprintf(stderr, __VA_ARGS__); \
- HDfprintf(stderr, "\n"); \
- H5tools_INDENT_g -= 2; \
- HDfflush(stderr); \
+ HDfprintf(stderr, __VA_ARGS__); \
+ HDfprintf(stderr, "\n"); \
+ H5tools_INDENT_g -= 2; \
+ HDfflush(stderr); \
} while(0)
#else
diff --git a/tools/lib/h5tools_utils.c b/tools/lib/h5tools_utils.c
index 45e436c..8a7a4dd 100644
--- a/tools/lib/h5tools_utils.c
+++ b/tools/lib/h5tools_utils.c
@@ -1079,6 +1079,55 @@ done:
return ret_value;
}
+#ifdef H5_HAVE_ROS3_VFD
+/*----------------------------------------------------------------------------
+ *
+ * Function: h5tools_parse_ros3_fapl_tuple
+ *
+ * Purpose: A convenience function that parses a string containing a tuple
+ * of S3 VFD credential information and then passes the result to
+ * `h5tools_populate_ros3_fapl()` in order to setup a valid
+ * configuration for the S3 VFD.
+ *
+ * Return: SUCCEED/FAIL
+ *
+ *----------------------------------------------------------------------------
+ */
+herr_t
+h5tools_parse_ros3_fapl_tuple(const char *tuple_str, int delim,
+ H5FD_ros3_fapl_t *fapl_config_out)
+{
+ const char *ccred[3];
+ unsigned nelems = 0;
+ char *start = NULL;
+ char *s3cred_src = NULL;
+ char **s3cred = NULL;
+ herr_t ret_value = SUCCEED;
+
+ /* Attempt to parse S3 credentials tuple */
+ if (parse_tuple(tuple_str, delim, &s3cred_src, &nelems, &s3cred) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "failed to parse S3 VFD info tuple");
+
+ /* Sanity-check tuple count */
+ if (nelems != 3)
+ H5TOOLS_GOTO_ERROR(FAIL, "invalid S3 VFD credentials");
+
+ ccred[0] = (const char *)s3cred[0];
+ ccred[1] = (const char *)s3cred[1];
+ ccred[2] = (const char *)s3cred[2];
+
+ if (0 == h5tools_populate_ros3_fapl(fapl_config_out, ccred))
+ H5TOOLS_GOTO_ERROR(FAIL, "failed to populate S3 VFD FAPL config");
+
+done:
+ if (s3cred)
+ HDfree(s3cred);
+ if (s3cred_src)
+ HDfree(s3cred_src);
+
+ return ret_value;
+}
+
/*----------------------------------------------------------------------------
*
@@ -1142,7 +1191,6 @@ done:
*
*----------------------------------------------------------------------------
*/
-#ifdef H5_HAVE_ROS3_VFD
int
h5tools_populate_ros3_fapl(H5FD_ros3_fapl_t *fa,
const char **values)
@@ -1266,73 +1314,72 @@ h5tools_populate_ros3_fapl(H5FD_ros3_fapl_t *fa,
done:
return ret_value;
-
} /* h5tools_populate_ros3_fapl */
#endif /* H5_HAVE_ROS3_VFD */
-
-/*-----------------------------------------------------------------------------
- *
- * Function: h5tools_set_configured_fapl
- *
- * Purpose: prepare fapl_id with the given property list, according to
- * VFD prototype.
+#ifdef H5_HAVE_LIBHDFS
+/*----------------------------------------------------------------------------
*
- * Return: 0 on failure, 1 on success
+ * Function: h5tools_parse_hdfs_fapl_tuple
*
- * Programmer: Jacob Smith
- * 2018-05-21
+ * Purpose: A convenience function that parses a string containing a tuple
+ * of HDFS VFD configuration information.
*
- * Changes: None.
+ * Return: SUCCEED/FAIL
*
- *-----------------------------------------------------------------------------
+ *----------------------------------------------------------------------------
*/
-int
-h5tools_set_configured_fapl(hid_t fapl_id,
- const char vfd_name[],
- void *fapl_t_ptr)
+herr_t
+h5tools_parse_hdfs_fapl_tuple(const char *tuple_str, int delim,
+ H5FD_hdfs_fapl_t *fapl_config_out)
{
- int ret_value = 1;
-
- if (fapl_id < 0) {
- return 0;
+ unsigned long k = 0;
+ unsigned nelems = 0;
+ char *props_src = NULL;
+ char **props = NULL;
+ herr_t ret_value = SUCCEED;
+
+ /* Attempt to parse HDFS configuration tuple */
+ if (parse_tuple(tuple_str, delim, &props_src, &nelems, &props) < 0)
+ H5TOOLS_GOTO_ERROR(FAIL, "failed to parse HDFS VFD configuration tuple");
+
+ /* Sanity-check tuple count */
+ if (nelems != 5)
+ H5TOOLS_GOTO_ERROR(FAIL, "invalid HDFS VFD configuration");
+
+ /* Populate fapl configuration structure with given properties.
+ * WARNING: No error-checking is done on length of input strings...
+ * Silent overflow is possible, albeit unlikely.
+ */
+ if (HDstrncmp(props[0], "", 1)) {
+ HDstrncpy(fapl_config_out->namenode_name, (const char *)props[0], HDstrlen(props[0]));
}
-
- if (!strcmp("", vfd_name)) {
- goto done;
-
-#ifdef H5_HAVE_ROS3_VFD
- } else if (!strcmp("ros3", vfd_name)) {
- if ((fapl_id == H5P_DEFAULT) ||
- (fapl_t_ptr == NULL) ||
- (FAIL == H5Pset_fapl_ros3(
- fapl_id,
- (H5FD_ros3_fapl_t *)fapl_t_ptr)))
- {
- ret_value = 0;
- goto done;
- }
-#endif /* H5_HAVE_ROS3_VFD */
-
-#ifdef H5_HAVE_LIBHDFS
- } else if (!strcmp("hdfs", vfd_name)) {
- if ((fapl_id == H5P_DEFAULT) ||
- (fapl_t_ptr == NULL) ||
- (FAIL == H5Pset_fapl_hdfs(
- fapl_id,
- (H5FD_hdfs_fapl_t *)fapl_t_ptr)))
- {
- ret_value = 0;
- goto done;
- }
-#endif /* H5_HAVE_LIBHDFS */
-
- } else {
- ret_value = 0; /* unrecognized fapl type "name" */
+ if (HDstrncmp(props[1], "", 1)) {
+ k = strtoul((const char *)props[1], NULL, 0);
+ if (errno == ERANGE)
+ H5TOOLS_GOTO_ERROR(FAIL, "supposed port number wasn't");
+ fapl_config_out->namenode_port = (int32_t)k;
+ }
+ if (HDstrncmp(props[2], "", 1)) {
+ HDstrncpy(fapl_config_out->kerberos_ticket_cache, (const char *)props[2], HDstrlen(props[2]));
+ }
+ if (HDstrncmp(props[3], "", 1)) {
+ HDstrncpy(fapl_config_out->user_name, (const char *)props[3], HDstrlen(props[3]));
+ }
+ if (HDstrncmp(props[4], "", 1)) {
+ k = HDstrtoul((const char *)props[4], NULL, 0);
+ if (errno == ERANGE)
+ H5TOOLS_GOTO_ERROR(FAIL, "supposed buffersize number wasn't");
+ fapl_config_out->stream_buffer_size = (int32_t)k;
}
done:
- return ret_value;
+ if (props)
+ HDfree(props);
+ if (props_src)
+ HDfree(props_src);
-} /* h5tools_set_configured_fapl() */
+ return ret_value;
+}
+#endif /* H5_HAVE_LIBHDFS */
diff --git a/tools/lib/h5tools_utils.h b/tools/lib/h5tools_utils.h
index 598930c..42144cc 100644
--- a/tools/lib/h5tools_utils.h
+++ b/tools/lib/h5tools_utils.h
@@ -173,10 +173,15 @@ H5TOOLS_DLL void h5tools_setprogname(const char*progname);
H5TOOLS_DLL int h5tools_getstatus(void);
H5TOOLS_DLL void h5tools_setstatus(int d_status);
H5TOOLS_DLL int h5tools_getenv_update_hyperslab_bufsize(void);
-H5TOOLS_DLL int h5tools_set_configured_fapl(hid_t fapl_id, const char vfd_name[], void *fapl_t_ptr);
#ifdef H5_HAVE_ROS3_VFD
+H5TOOLS_DLL herr_t h5tools_parse_ros3_fapl_tuple(const char *tuple_str, int delim,
+ H5FD_ros3_fapl_t *fapl_config_out);
H5TOOLS_DLL int h5tools_populate_ros3_fapl(H5FD_ros3_fapl_t *fa, const char **values);
#endif /* H5_HAVE_ROS3_VFD */
+#ifdef H5_HAVE_LIBHDFS
+H5TOOLS_DLL herr_t h5tools_parse_hdfs_fapl_tuple(const char *tuple_str, int delim,
+ H5FD_hdfs_fapl_t *fapl_config_out);
+#endif
#ifdef __cplusplus
}
diff --git a/tools/libtest/h5tools_test_utils.c b/tools/libtest/h5tools_test_utils.c
index 726f4c4..160e06f 100644
--- a/tools/libtest/h5tools_test_utils.c
+++ b/tools/libtest/h5tools_test_utils.c
@@ -960,7 +960,7 @@ error :
*
* Function: test_set_configured_fapl()
*
- * Purpose: Verify `h5tools_set_configured_fapl()` with ROS3 VFD
+ * Purpose: Verify `h5tools_get_fapl()` with ROS3 and HDFS VFDs
*
* Return: 0 if test passes
* 1 if failure
@@ -1147,7 +1147,8 @@ test_set_configured_fapl(void)
TESTING("programmatic fapl set");
for (i = 0; i < n_cases; i++) {
- int result;
+ h5tools_get_fapl_info_t get_fapl_info;
+ hid_t result;
testcase C = cases[i];
fapl_id = H5I_INVALID_HID;
@@ -1169,11 +1170,14 @@ test_set_configured_fapl(void)
#endif /* UTIL_TEST_DEBUG */
/* test */
- result = h5tools_set_configured_fapl(
- fapl_id,
- C.vfdname,
- C.conf_fa);
- JSVERIFY( result, C.expected, C.message )
+ get_fapl_info.get_type = GET_VFD_BY_NAME;
+ get_fapl_info.info = C.conf_fa;
+ get_fapl_info.u.name = C.vfdname;
+ result = h5tools_get_fapl(H5P_DEFAULT, &get_fapl_info);
+ if (C.expected == 0)
+ JSVERIFY( result, H5I_INVALID_HID, C.message)
+ else
+ JSVERIFY_NOT( result, H5I_INVALID_HID, C.message)
#if UTIL_TEST_DEBUG
HDfprintf(stderr, "after test\n"); fflush(stderr);
diff --git a/tools/src/h5copy/h5copy.c b/tools/src/h5copy/h5copy.c
index e1370e2..8805d08 100644
--- a/tools/src/h5copy/h5copy.c
+++ b/tools/src/h5copy/h5copy.c
@@ -342,13 +342,13 @@ main (int argc, const char *argv[])
/* Attempt to open an existing HDF5 file first. Need to open the dst file
before the src file just in case that the dst and src are the same file
*/
- fid_dst = h5tools_fopen(fname_dst, H5F_ACC_RDWR, H5P_DEFAULT, NULL, NULL, 0);
+ fid_dst = h5tools_fopen(fname_dst, H5F_ACC_RDWR, H5P_DEFAULT, FALSE, NULL, 0);
/*-------------------------------------------------------------------------
* open input file
*-------------------------------------------------------------------------*/
- fid_src = h5tools_fopen(fname_src, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, 0);
+ fid_src = h5tools_fopen(fname_src, H5F_ACC_RDONLY, H5P_DEFAULT, FALSE, NULL, 0);
/*-------------------------------------------------------------------------
* test for error in opening input file
diff --git a/tools/src/h5dump/h5dump.c b/tools/src/h5dump/h5dump.c
index d97fdc0..6255f7c 100644
--- a/tools/src/h5dump/h5dump.c
+++ b/tools/src/h5dump/h5dump.c
@@ -25,23 +25,25 @@ static int useschema = 1;
static const char *xml_dtd_uri = NULL;
#ifdef H5_HAVE_ROS3_VFD
+/* Default "anonymous" S3 configuration */
static H5FD_ros3_fapl_t ros3_fa = {
- 1, /* version */
- false, /* authenticate */
- "", /* aws region */
- "", /* access key id */
- "", /* secret access key */
+ 1, /* FAPL Version */
+ false, /* Authenticate? */
+ "", /* AWS Region */
+ "", /* Access Key ID */
+ "", /* Secret Access Key */
};
#endif /* H5_HAVE_ROS3_VFD */
#ifdef H5_HAVE_LIBHDFS
+/* "Default" HDFS configuration */
static H5FD_hdfs_fapl_t hdfs_fa = {
- 1, /* fapl version */
- "localhost", /* namenode name */
- 0, /* namenode port */
- "", /* kerberos ticket cache */
- "", /* user name */
- 2048, /* stream buffer size */
+ 1, /* FAPL Version */
+ "localhost", /* Namenode Name */
+ 0, /* Namenode Port */
+ "", /* Kerberos ticket cache */
+ "", /* User name */
+ 2048, /* Stream buffer size */
};
#endif /* H5_HAVE_LIBHDFS */
@@ -1251,106 +1253,37 @@ end_collect:
goto done;
case '$':
-#ifndef H5_HAVE_ROS3_VFD
+#ifdef H5_HAVE_ROS3_VFD
+ if (h5tools_parse_ros3_fapl_tuple(opt_arg, ',', &ros3_fa) < 0) {
+ error_msg("failed to parse S3 VFD credential info\n");
+ usage(h5tools_getprogname());
+ free_handler(hand, argc);
+ hand = NULL;
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
+#else
error_msg("Read-Only S3 VFD not enabled.\n");
h5tools_setstatus(EXIT_FAILURE);
goto done;
-#else
- /* s3 credential */
- {
- char **s3_cred = NULL;
- char *s3_cred_string = NULL;
- const char *ccred[3];
- unsigned nelems = 0;
- if (FAIL == parse_tuple(opt_arg, ',', &s3_cred_string, &nelems, &s3_cred)) {
- error_msg("unable to parse malformed s3 credentials\n");
- usage(h5tools_getprogname());
- free_handler(hand, argc);
- hand = NULL;
- h5tools_setstatus(EXIT_FAILURE);
- goto done;
- }
- if (nelems != 3) {
- error_msg("s3 credentials expects 3 elements\n");
- usage(h5tools_getprogname());
- free_handler(hand, argc);
- hand = NULL;
- h5tools_setstatus(EXIT_FAILURE);
- goto done;
- }
- ccred[0] = (const char *)s3_cred[0];
- ccred[1] = (const char *)s3_cred[1];
- ccred[2] = (const char *)s3_cred[2];
- if (0 == h5tools_populate_ros3_fapl(&ros3_fa, ccred)) {
- error_msg("Invalid S3 credentials\n");
- usage(h5tools_getprogname());
- free_handler(hand, argc);
- hand = NULL;
- h5tools_setstatus(EXIT_FAILURE);
- goto done;
- }
- HDfree(s3_cred);
- HDfree(s3_cred_string);
- } /* s3 credential block */
+#endif
break;
-#endif /* H5_HAVE_ROS3_VFD */
case '#':
-#ifndef H5_HAVE_LIBHDFS
- error_msg("HDFS VFD is not enabled.\n");
- goto error;
-#else
- {
- /* read hdfs properties tuple and store values in `hdfs_fa` */
- unsigned nelems = 0;
- char *props_src = NULL;
- char **props = NULL;
- unsigned long k = 0;
- if (FAIL == parse_tuple((const char *)opt_arg, ',', &props_src, &nelems, &props)) {
- error_msg("unable to parse hdfs properties tuple\n");
- goto error;
- }
- /* sanity-check tuple count
- */
- if (nelems != 5) {
- h5tools_setstatus(EXIT_FAILURE);
- goto error;
- }
- /* Populate fapl configuration structure with given
- * properties.
- * WARNING: No error-checking is done on length of input
- * strings... Silent overflow is possible, albeit
- * unlikely.
- */
- if (strncmp(props[0], "", 1))
- HDstrncpy(hdfs_fa.namenode_name, (const char *)props[0], HDstrlen(props[0]));
-
- if (strncmp(props[1], "", 1)) {
- k = strtoul((const char *)props[1], NULL, 0);
- if (errno == ERANGE) {
- h5tools_setstatus(EXIT_FAILURE);
- goto error;
- }
- hdfs_fa.namenode_port = (int32_t)k;
- }
- if (strncmp(props[2], "", 1))
- HDstrncpy(hdfs_fa.kerberos_ticket_cache, (const char *)props[2], HDstrlen(props[2]));
-
- if (strncmp(props[3], "", 1))
- HDstrncpy(hdfs_fa.user_name, (const char *)props[3], HDstrlen(props[3]));
-
- if (strncmp(props[4], "", 1)) {
- k = strtoul((const char *)props[4], NULL, 0);
- if (errno == ERANGE) {
- h5tools_setstatus(EXIT_FAILURE);
- goto error;
- }
- hdfs_fa.stream_buffer_size = (int32_t)k;
- }
- HDfree(props);
- HDfree(props_src);
+#ifdef H5_HAVE_LIBHDFS
+ if (h5tools_parse_hdfs_fapl_tuple(opt_arg, ',', &hdfs_fa) < 0) {
+ error_msg("failed to parse HDFS VFD configuration info\n");
+ usage(h5tools_getprogname());
+ free_handler(hand, argc);
+ hand = NULL;
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
-#endif /* H5_HAVE_LIBHDFS */
+#else
+ error_msg("HDFS VFD not enabled.\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+#endif
break;
case '?':
@@ -1482,53 +1415,44 @@ main(int argc, const char *argv[])
h5trav_set_index(sort_by, sort_order);
if (driver != NULL) {
- void *conf_fa = NULL;
+ h5tools_get_fapl_info_t get_fapl_info;
+
+ /* Currently, only retrieval of VFDs is supported. */
+ get_fapl_info.get_type = GET_VFD_BY_NAME;
+ get_fapl_info.info = NULL;
+ get_fapl_info.u.name = driver;
- if (!strcmp(driver, "ros3")) {
-#ifndef H5_HAVE_ROS3_VFD
+ if (!HDstrcmp(driver, drivernames[ROS3_VFD_IDX])) {
+#ifdef H5_HAVE_ROS3_VFD
+ get_fapl_info.info = (void *)&ros3_fa;
+#else
error_msg("Read-Only S3 VFD not enabled.\n");
h5tools_setstatus(EXIT_FAILURE);
goto done;
-#else
- conf_fa = (void *)&ros3_fa;
-#endif /* H5_HAVE_ROS3_VFD */
+#endif
}
- else if (!HDstrcmp(driver, "hdfs")) {
-#ifndef H5_HAVE_LIBHDFS
- error_msg("HDFS VFD is not enabled.\n");
+ else if (!HDstrcmp(driver, drivernames[HDFS_VFD_IDX])) {
+#ifdef H5_HAVE_LIBHDFS
+ get_fapl_info.info = (void *)&hdfs_fa;
+#else
+ error_msg("The HDFS VFD is not enabled.\n");
h5tools_setstatus(EXIT_FAILURE);
goto done;
-#else
- conf_fa = (void *)&hdfs_fa;
-#endif /* H5_HAVE_LIBHDFS */
+#endif
}
- if (conf_fa != NULL) {
- fapl_id = H5Pcreate(H5P_FILE_ACCESS);
- if (fapl_id < 0) {
- error_msg("unable to create fapl entry\n");
- h5tools_setstatus(EXIT_FAILURE);
- goto done;
- }
- /* driver guaranteed "ros3" or "hdfs" */
- /* conf_fa appropriate to driver */
- if (0 == h5tools_set_configured_fapl(fapl_id, driver, conf_fa)) {
- error_msg("unable to set fapl\n");
- h5tools_setstatus(EXIT_FAILURE);
- goto done;
- }
+ if ((fapl_id = h5tools_get_fapl(H5P_DEFAULT, &get_fapl_info)) < 0) {
+ error_msg("unable to create FAPL for file access\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
} /* driver defined */
while(opt_ind < argc) {
fname = HDstrdup(argv[opt_ind++]);
- if (fapl_id != H5P_DEFAULT) {
- fid = H5Fopen(fname, H5F_ACC_RDONLY, fapl_id);
- }
- else {
- fid = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, driver, NULL, 0);
- }
+ fid = h5tools_fopen(fname, H5F_ACC_RDONLY, fapl_id,
+ (fapl_id == H5P_DEFAULT) ? FALSE : TRUE, NULL, 0);
if (fid < 0) {
error_msg("unable to open file \"%s\"\n", fname);
@@ -1704,6 +1628,7 @@ main(int argc, const char *argv[])
/* To Do: clean up XML table */
H5Eset_auto2(H5E_DEFAULT, func, edata);
+ H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
leave(h5tools_getstatus());
@@ -1735,6 +1660,7 @@ done:
/* To Do: clean up XML table */
H5Eset_auto2(H5E_DEFAULT, func, edata);
+ H5Eset_auto2(H5tools_ERR_STACK_g, tools_func, tools_edata);
leave(h5tools_getstatus());
} /* main */
diff --git a/tools/src/h5format_convert/h5format_convert.c b/tools/src/h5format_convert/h5format_convert.c
index bb606ac..01e7fe0 100644
--- a/tools/src/h5format_convert/h5format_convert.c
+++ b/tools/src/h5format_convert/h5format_convert.c
@@ -421,7 +421,7 @@ main(int argc, const char *argv[])
HDfprintf(stdout, "It is noop...\n");
/* Open the HDF5 file */
- if((fid = h5tools_fopen(fname_g, H5F_ACC_RDWR, H5P_DEFAULT, NULL, NULL, 0)) < 0) {
+ if((fid = h5tools_fopen(fname_g, H5F_ACC_RDWR, H5P_DEFAULT, FALSE, NULL, 0)) < 0) {
error_msg("unable to open file \"%s\"\n", fname_g);
h5tools_setstatus(EXIT_FAILURE);
goto done;
diff --git a/tools/src/h5ls/h5ls.c b/tools/src/h5ls/h5ls.c
index f3f9ede..11f3f0b 100644
--- a/tools/src/h5ls/h5ls.c
+++ b/tools/src/h5ls/h5ls.c
@@ -2833,41 +2833,41 @@ leave(int ret)
int
main(int argc, const char *argv[])
{
- hid_t file_id = H5I_INVALID_HID;
- char *fname = NULL, *oname = NULL, *x;
- const char *s = NULL;
- char *rest;
- int argno;
- static char root_name[] = "/";
- char drivername[50];
- const char *preferred_driver = NULL;
- int err_exit = 0;
- hid_t fapl_id = H5P_DEFAULT;
- H5E_auto2_t func;
- H5E_auto2_t tools_func;
- void *edata;
- void *tools_edata;
+ hid_t file_id = H5I_INVALID_HID;
+ char *fname = NULL, *oname = NULL, *x;
+ const char *s = NULL;
+ char *rest;
+ int argno;
+ static char root_name[] = "/";
+ char drivername[50];
+ const char *preferred_driver = NULL;
+ int err_exit = 0;
+ hid_t fapl_id = H5P_DEFAULT;
+ H5E_auto2_t func;
+ H5E_auto2_t tools_func;
+ void *edata;
+ void *tools_edata;
#ifdef H5_HAVE_ROS3_VFD
- /* default "anonymous" s3 configuration */
+ /* Default "anonymous" S3 configuration */
H5FD_ros3_fapl_t ros3_fa = {
- 1, /* fapl version */
- false, /* authenticate */
- "", /* aws region */
- "", /* access key id */
- "", /* secret access key */
+ 1, /* FAPL Version */
+ false, /* Authenticate? */
+ "", /* AWS Region */
+ "", /* Access Key ID */
+ "", /* Secret Access Key */
};
-#endif /* H5_HVAE_ROS3_VFD */
+#endif /* H5_HAVE_ROS3_VFD */
#ifdef H5_HAVE_LIBHDFS
- /* "default" HDFS configuration */
+ /* "Default" HDFS configuration */
H5FD_hdfs_fapl_t hdfs_fa = {
- 1, /* fapl version */
- "localhost", /* namenode name */
- 0, /* namenode port */
- "", /* kerberos ticket cache */
- "", /* user name */
- 2048, /* stream buffer size */
+ 1, /* FAPL Version */
+ "localhost", /* Namenode Name */
+ 0, /* Namenode Port */
+ "", /* Kerberos ticket cache */
+ "", /* User name */
+ 2048, /* Stream buffer size */
};
#endif /* H5_HAVE_LIBHDFS */
@@ -3005,18 +3005,7 @@ main(int argc, const char *argv[])
}
else if (!HDstrncmp(argv[argno], "--s3-cred=", (size_t)10)) {
-#ifndef H5_HAVE_ROS3_VFD
- HDfprintf(rawerrorstream, "Error: Read-Only S3 VFD is not enabled\n\n");
- usage();
- leave(EXIT_FAILURE);
-#else
- unsigned nelems = 0;
- char *start = NULL;
- char *s3cred_src = NULL;
- char **s3cred = NULL;
- char const *ccred[3];
- /* try to parse s3 credentials tuple
- */
+#ifdef H5_HAVE_ROS3_VFD
start = strchr(argv[argno], '=');
if (start == NULL) {
HDfprintf(rawerrorstream, "Error: Unable to parse null credentials tuple\n"
@@ -3025,124 +3014,38 @@ main(int argc, const char *argv[])
leave(EXIT_FAILURE);
}
start++;
- if (FAIL == parse_tuple((const char *)start, ',', &s3cred_src, &nelems, &s3cred)) {
- HDfprintf(rawerrorstream, "Error: Unable to parse S3 credentials\n\n");
- usage();
- leave(EXIT_FAILURE);
- }
- /* sanity-check tuple count
- */
- if (nelems != 3) {
- HDfprintf(rawerrorstream, "Error: Invalid S3 credentials\n\n");
- usage();
- leave(EXIT_FAILURE);
- }
- ccred[0] = (const char *)s3cred[0];
- ccred[1] = (const char *)s3cred[1];
- ccred[2] = (const char *)s3cred[2];
- if (0 == h5tools_populate_ros3_fapl(&ros3_fa, ccred)) {
- HDfprintf(rawerrorstream, "Error: Invalid S3 credentials\n\n");
+
+ if (h5tools_parse_ros3_fapl_tuple(start, ',', &ros3_fa) < 0) {
+ HDfprintf(rawerrorstream, "Error: failed to parse S3 VFD credential info\n\n");
usage();
leave(EXIT_FAILURE);
}
- HDfree(s3cred);
- HDfree(s3cred_src);
-#endif /* H5_HAVE_ROS3_VFD */
-
+#else
+ HDfprintf(rawerrorstream, "Error: Read-Only S3 VFD is not enabled\n\n");
+ usage();
+ leave(EXIT_FAILURE);
+#endif
}
else if (!HDstrncmp(argv[argno], "--hdfs-attrs=", (size_t)13)) {
-#ifndef H5_HAVE_LIBHDFS
- PRINTVALSTREAM(rawoutstream, "The HDFS VFD is not enabled.\n");
- leave(EXIT_FAILURE);
-#else
- /* Parse received configuration data and set fapl config struct */
-
- hbool_t _debug = FALSE;
- unsigned nelems = 0;
- char const *start = NULL;
- char *props_src = NULL;
- char **props = NULL;
- unsigned long k = 0;
-
- /* try to parse tuple
- */
- if (_debug) {
- HDfprintf(stderr, "configuring hdfs...\n");
- }
+#ifdef H5_HAVE_LIBHDFS
+ char const *start = NULL;
+
start = argv[argno]+13; /* should never segfault: worst case of */
if (*start != '(') { /* null-termintor after '='. */
-
- if (_debug) {
- HDfprintf(stderr, " no tuple.\n");
- }
- usage();
- leave(EXIT_FAILURE);
- }
- if (FAIL == parse_tuple((const char *)start, ',', &props_src, &nelems, &props)) {
- HDfprintf(stderr, " unable to parse tuple.\n");
usage();
leave(EXIT_FAILURE);
}
- /* sanity-check tuple count
- */
- if (nelems != 5) {
- HDfprintf(stderr, " expected 5-ple, got `%d`\n", nelems);
+ if (h5tools_parse_hdfs_fapl_tuple(start, ',', &hdfs_fa) < 0) {
+ HDfprintf(rawerrorstream, "Error: failed to parse HDFS VFD configuration info\n\n");
usage();
leave(EXIT_FAILURE);
}
- if (_debug) {
- HDfprintf(stderr, " got hdfs-attrs tuple: `(%s,%s,%s,%s,%s)`\n", props[0], props[1], props[2], props[3], props[4]);
- }
-
- /* Populate fapl configuration structure with given properties.
- * WARNING: No error-checking is done on length of input strings...
- * Silent overflow is possible, albeit unlikely.
- */
- if (HDstrncmp(props[0], "", 1)) {
- if (_debug) {
- HDfprintf(stderr, " setting namenode name: %s\n", props[0]);
- }
- HDstrncpy(hdfs_fa.namenode_name, (const char *)props[0], HDstrlen(props[0]));
- }
- if (HDstrncmp(props[1], "", 1)) {
- k = strtoul((const char *)props[1], NULL, 0);
- if (errno == ERANGE) {
- HDfprintf(stderr, " supposed port number wasn't.\n");
- leave(EXIT_FAILURE);
- }
- if (_debug) {
- HDfprintf(stderr, " setting namenode port: %lu\n", k);
- }
- hdfs_fa.namenode_port = (int32_t)k;
- }
- if (HDstrncmp(props[2], "", 1)) {
- if (_debug) {
- HDfprintf(stderr, " setting kerb cache path: %s\n", props[2]);
- }
- HDstrncpy(hdfs_fa.kerberos_ticket_cache, (const char *)props[2], HDstrlen(props[2]));
- }
- if (HDstrncmp(props[3], "", 1)) {
- if (_debug) {
- HDfprintf(stderr, " setting username: %s\n", props[3]);
- }
- HDstrncpy(hdfs_fa.user_name, (const char *)props[3], HDstrlen(props[3]));
- }
- if (HDstrncmp(props[4], "", 1)) {
- k = HDstrtoul((const char *)props[4], NULL, 0);
- if (errno == ERANGE) {
- HDfprintf(stderr, " supposed buffersize number wasn't.\n");
- leave(EXIT_FAILURE);
- }
- if (_debug) {
- HDfprintf(stderr, " setting stream buffer size: %lu\n", k);
- }
- hdfs_fa.stream_buffer_size = (int32_t)k;
- }
- HDfree(props);
- HDfree(props_src);
-#endif /* H5_HAVE_LIBHDFS */
-
+#else
+ HDfprintf(rawerrorstream, "Error: The HDFS VFD is not enabled\n\n");
+ usage();
+ leave(EXIT_FAILURE);
+#endif
}
else if('-'!=argv[argno][1]) {
/* Single-letter switches */
@@ -3236,41 +3139,35 @@ main(int argc, const char *argv[])
}
if (preferred_driver) {
- void *conf_fa = NULL;
+ h5tools_get_fapl_info_t get_fapl_info;
- if (!HDstrcmp(preferred_driver, "ros3")) {
-#ifndef H5_HAVE_ROS3_VFD
- HDfprintf(rawerrorstream, "Error: Read-Only S3 VFD not enabled.\n\n");
- usage();
- leave(EXIT_FAILURE);
-#else
- conf_fa = (void *)&ros3_fa;
-#endif /* H5_HAVE_ROS3_VFD */
+ /* Currently, only retrieval of VFDs is supported. */
+ get_fapl_info.get_type = GET_VFD_BY_NAME;
+ get_fapl_info.info = NULL;
+ get_fapl_info.u.name = preferred_driver;
- }
- else if (!HDstrcmp(preferred_driver, "hdfs")) {
-#ifndef H5_HAVE_LIBHDFS
- PRINTVALSTREAM(rawoutstream, "The HDFS VFD is not enabled.\n");
+ if (!HDstrcmp(preferred_driver, drivernames[ROS3_VFD_IDX])) {
+#ifdef H5_HAVE_ROS3_VFD
+ get_fapl_info.info = (void *)&ros3_fa;
+#else
+ HDfprintf(rawerrorstream, "Error: Read-Only S3 VFD is not enabled\n\n");
leave(EXIT_FAILURE);
+#endif
+ }
+ else if (!HDstrcmp(preferred_driver, drivernames[HDFS_VFD_IDX])) {
+#ifdef H5_HAVE_LIBHDFS
+ get_fapl_info.info = (void *)&hdfs_fa;
#else
- conf_fa = (void *)&hdfs_fa;
-#endif /* H5_HAVE_LIBHDFS */
+ HDfprintf(rawerrorstream, "Error: The HDFS VFD is not enabled\n\n");
+ leave(EXIT_FAILURE);
+#endif
}
- if (conf_fa != NULL) {
- HDassert(fapl_id == H5P_DEFAULT);
- fapl_id = H5Pcreate(H5P_FILE_ACCESS);
- if (fapl_id < 0) {
- HDfprintf(rawerrorstream, "Error: Unable to create fapl entry\n\n");
- leave(EXIT_FAILURE);
- }
- if (0 == h5tools_set_configured_fapl(fapl_id, preferred_driver, conf_fa)) {
- HDfprintf(rawerrorstream, "Error: Unable to set fapl\n\n");
- usage();
- leave(EXIT_FAILURE);
- }
+ if ((fapl_id = h5tools_get_fapl(H5P_DEFAULT, &get_fapl_info)) < 0) {
+ HDfprintf(rawerrorstream, "Error: Unable to create FAPL for file access\n\n");
+ leave(EXIT_FAILURE);
}
- } /* preferred_driver defined */
+ }
if (enable_error_stack > 0) {
H5Eset_auto2(H5E_DEFAULT, func, edata);
@@ -3301,12 +3198,8 @@ main(int argc, const char *argv[])
file_id = H5I_INVALID_HID;
while (fname && *fname) {
- if (fapl_id != H5P_DEFAULT) {
- file_id = H5Fopen(fname, H5F_ACC_RDONLY, fapl_id);
- }
- else {
- file_id = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, preferred_driver, drivername, sizeof drivername);
- }
+ file_id = h5tools_fopen(fname, H5F_ACC_RDONLY, fapl_id,
+ (fapl_id == H5P_DEFAULT) ? FALSE : TRUE, drivername, sizeof drivername);
if (file_id >= 0) {
if (verbose_g)
diff --git a/tools/src/h5repack/h5repack.c b/tools/src/h5repack/h5repack.c
index 8eeaa0e..081bdcd 100644
--- a/tools/src/h5repack/h5repack.c
+++ b/tools/src/h5repack/h5repack.c
@@ -79,6 +79,8 @@ h5repack_init(pack_opt_t *options, int verbose, hbool_t latest)
options->layout_g = H5D_LAYOUT_ERROR;
options->low_bound = H5F_LIBVER_EARLIEST;
options->high_bound = H5F_LIBVER_LATEST;
+ options->fin_fapl = H5P_DEFAULT;
+ options->fout_fapl = H5P_DEFAULT;
for (n = 0; n < H5_REPACK_MAX_NFILTERS; n++) {
options->filter_g[n].filtn = -1;
@@ -751,7 +753,8 @@ check_objects(const char* fname, pack_opt_t *options)
* open the file
*-------------------------------------------------------------------------
*/
- if ((fid = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, 0)) < 0)
+ if ((fid = h5tools_fopen(fname, H5F_ACC_RDONLY, options->fin_fapl,
+ (options->fin_fapl == H5P_DEFAULT) ? FALSE : TRUE, NULL, 0)) < 0)
H5TOOLS_GOTO_ERROR((-1), "h5tools_fopen failed <%s>: %s", fname, H5FOPENERROR);
/*-------------------------------------------------------------------------
diff --git a/tools/src/h5repack/h5repack.h b/tools/src/h5repack/h5repack.h
index 52ecb0e..caa1166 100644
--- a/tools/src/h5repack/h5repack.h
+++ b/tools/src/h5repack/h5repack.h
@@ -114,6 +114,8 @@ typedef struct {
hbool_t latest; /*pack file with the latest file format */
H5F_libver_t low_bound; /* The file's low bound as in H5Fset_libver_bounds() */
H5F_libver_t high_bound; /* The file's high bound as in H5Fset_libver_bounds() */
+ hid_t fin_fapl; /* FAPL to use for opening the input file */
+ hid_t fout_fapl; /* FAPL to use for opening/creating the output file */
int grp_compact; /* Set the maximum number of links to store as header messages in the group */
int grp_indexed; /* Set the minimum number of links to store in the indexed format */
int msg_size[8]; /* Minimum size of shared messages: dataspace,
@@ -151,7 +153,7 @@ int h5repack_addlayout(const char* str, pack_opt_t *options);
int h5repack_init(pack_opt_t *options, int verbose, hbool_t latest);
int h5repack_end(pack_opt_t *options);
int h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options);
-int h5repack_cmp_pl(const char *fname1, const char *fname2);
+int h5repack_cmp_pl(const char *fname1, hid_t fname1_fapl, const char *fname2, hid_t fname2_fapl);
/* Note: The below copy_named_datatype(), named_datatype_free(), copy_attr()
* and struct named_dt_t were located in h5repack_copy.c as static prior to
diff --git a/tools/src/h5repack/h5repack_copy.c b/tools/src/h5repack/h5repack_copy.c
index 1044244..ae93b30 100644
--- a/tools/src/h5repack/h5repack_copy.c
+++ b/tools/src/h5repack/h5repack_copy.c
@@ -67,7 +67,6 @@ copy_objects(const char* fnamein, const char* fnameout, pack_opt_t *options)
hid_t grp_in = H5I_INVALID_HID; /* group ID */
hid_t gcpl_in = H5I_INVALID_HID; /* group creation property list */
hid_t fcpl = H5P_DEFAULT; /* file creation property list ID */
- hid_t fapl = H5P_DEFAULT; /* file access property list ID */
trav_table_t *travt = NULL;
hsize_t ub_size = 0; /* size of user block */
H5F_fspace_strategy_t set_strategy; /* Strategy to be set in outupt file */
@@ -85,7 +84,8 @@ copy_objects(const char* fnamein, const char* fnameout, pack_opt_t *options)
* open input file
*-------------------------------------------------------------------------
*/
- if ((fidin = h5tools_fopen(fnamein, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, (size_t) 0)) < 0)
+ if ((fidin = h5tools_fopen(fnamein, H5F_ACC_RDONLY, options->fin_fapl,
+ (options->fin_fapl == H5P_DEFAULT) ? FALSE : TRUE, NULL, (size_t) 0)) < 0)
H5TOOLS_GOTO_ERROR((-1), "h5tools_fopen failed <%s>: %s", fnamein, H5FOPENERROR);
/* get user block size and file space strategy/persist/threshold */
@@ -122,12 +122,14 @@ copy_objects(const char* fnamein, const char* fnameout, pack_opt_t *options)
if(options->latest)
options->low_bound = options->high_bound = H5F_LIBVER_LATEST;
+
/* Create file access property list */
- if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
- H5TOOLS_GOTO_ERROR((-1), "H5Pcreate failed to create file access property list");
+ if (options->fout_fapl == H5P_DEFAULT)
+ if ((options->fout_fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
+ H5TOOLS_GOTO_ERROR((-1), "H5Pcreate failed to create file access property list");
/* It can be default, latest or other settings by users */
- if(H5Pset_libver_bounds(fapl, options->low_bound, options->high_bound) < 0)
+ if(H5Pset_libver_bounds(options->fout_fapl, options->low_bound, options->high_bound) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Pset_libver_bounds failed to set format version bounds");
/* Check if we need to create a non-default file creation property list */
@@ -218,12 +220,12 @@ print_user_block(fnamein, fidin);
*/
if (options->alignment > 0) {
/* either use the FAPL already created or create a new one */
- if (fapl == H5P_DEFAULT)
+ if (options->fout_fapl == H5P_DEFAULT)
/* create a file access property list */
- if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
+ if ((options->fout_fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Pcreate failed to create file access property list");
- if (H5Pset_alignment(fapl, options->threshold, options->alignment) < 0)
+ if (H5Pset_alignment(options->fout_fapl, options->threshold, options->alignment) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Pset_alignment failed to set alignment");
}
@@ -233,12 +235,12 @@ print_user_block(fnamein, fidin);
*/
if (options->meta_block_size > 0) {
/* either use the FAPL already created or create a new one */
- if (fapl == H5P_DEFAULT)
+ if (options->fout_fapl == H5P_DEFAULT)
/* create a file access property list */
- if ((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
+ if ((options->fout_fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Pcreate failed to create file access property list");
- if (H5Pset_meta_block_size(fapl, options->meta_block_size) < 0)
+ if (H5Pset_meta_block_size(options->fout_fapl, options->meta_block_size) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Pset_meta_block_size failed to set metadata block size");
}
@@ -297,7 +299,7 @@ print_user_block(fnamein, fidin);
if (options->verbose)
HDprintf("Making new file ...\n");
- if ((fidout = H5Fcreate(fnameout, H5F_ACC_TRUNC, fcpl, fapl)) < 0)
+ if ((fidout = H5Fcreate(fnameout, H5F_ACC_TRUNC, fcpl, options->fout_fapl)) < 0)
H5TOOLS_GOTO_ERROR((-1), "H5Fcreate could not create file <%s>:", fnameout);
/*-------------------------------------------------------------------------
@@ -352,7 +354,6 @@ done:
H5E_BEGIN_TRY {
H5Pclose(fcpl_in);
H5Pclose(gcpl_in);
- H5Pclose(fapl);
H5Pclose(fcpl);
H5Gclose(grp_in);
H5Fclose(fidin);
@@ -702,11 +703,14 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt,
break;
- /*-------------------------------------------------------------------------
- * H5TRAV_TYPE_DATASET
- *-------------------------------------------------------------------------
- */
+ /*-------------------------------------------------------------------------
+ * H5TRAV_TYPE_DATASET
+ *-------------------------------------------------------------------------
+ */
case H5TRAV_TYPE_DATASET:
+ {
+ hbool_t use_h5ocopy;
+
has_filter = 0;
req_filter = 0;
@@ -764,9 +768,47 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt,
* otherwise we do a copy using H5Ocopy
*-------------------------------------------------------------------------
*/
- if (options->op_tbl->nelems || options->all_filter == 1
- || options->all_layout == 1 || is_ref || is_named) {
+ use_h5ocopy = !(options->op_tbl->nelems || options->all_filter == 1
+ || options->all_layout == 1 || is_ref || is_named);
+
+ /*
+ * Check if we are using different source and destination VOL connectors.
+ * In this case, we currently have to avoid usage of H5Ocopy since it
+ * doesn't support this.
+ */
+ if (use_h5ocopy && (options->fin_fapl != H5P_DEFAULT || options->fout_fapl != H5P_DEFAULT)) {
+ hid_t in_vol_id;
+ hid_t out_vol_id;
+ hid_t default_vol_id;
+
+ if (H5Pget_vol_id(H5P_FILE_ACCESS_DEFAULT, &default_vol_id) < 0)
+ H5TOOLS_GOTO_ERROR((-1), "H5Pget_vol_id failed");
+
+ if (options->fin_fapl == H5P_DEFAULT)
+ in_vol_id = default_vol_id;
+ else
+ if (H5Pget_vol_id(options->fin_fapl, &in_vol_id) < 0)
+ H5TOOLS_GOTO_ERROR((-1), "H5Pget_vol_id failed");
+ if (options->fout_fapl == H5P_DEFAULT)
+ out_vol_id = default_vol_id;
+ else
+ if (H5Pget_vol_id(options->fout_fapl, &out_vol_id) < 0)
+ H5TOOLS_GOTO_ERROR((-1), "H5Pget_vol_id failed");
+
+ if (in_vol_id != out_vol_id)
+ use_h5ocopy = FALSE;
+
+ if (in_vol_id != default_vol_id)
+ if (H5VLclose(in_vol_id) < 0)
+ H5TOOLS_GOTO_ERROR((-1), "H5VLclose failed");
+ if (out_vol_id != default_vol_id)
+ if (H5VLclose(out_vol_id) < 0)
+ H5TOOLS_GOTO_ERROR((-1), "H5VLclose failed");
+ if (H5VLclose(default_vol_id) < 0)
+ H5TOOLS_GOTO_ERROR((-1), "H5VLclose failed");
+ }
+ if (!use_h5ocopy) {
int j;
if ((dset_in = H5Dopen2(fidin, travt->objs[i].name, H5P_DEFAULT)) < 0)
@@ -1135,7 +1177,9 @@ do_copy_objects(hid_t fidin, hid_t fidout, trav_table_t *travt,
HDprintf(FORMAT_OBJ, "dset", travt->objs[i].name);
} /* end whether we have request for filter/chunking */
+
break;
+ } /* H5TRAV_TYPE_DATASET */
/*-------------------------------------------------------------------------
* H5TRAV_TYPE_NAMED_DATATYPE
diff --git a/tools/src/h5repack/h5repack_main.c b/tools/src/h5repack/h5repack_main.c
index 16899a3..50b6a92 100644
--- a/tools/src/h5repack/h5repack_main.c
+++ b/tools/src/h5repack/h5repack_main.c
@@ -62,6 +62,12 @@ static struct long_options l_opts[] = {
{ "sort_by", require_arg, 'q' },
{ "sort_order", require_arg, 'z' },
{ "enable-error-stack", no_arg, 'E' },
+ { "src-vol-id", require_arg, '1' },
+ { "src-vol-name", require_arg, '2' },
+ { "src-vol-info", require_arg, '3' },
+ { "dst-vol-id", require_arg, '4' },
+ { "dst-vol-name", require_arg, '5' },
+ { "dst-vol-info", require_arg, '6' },
{ NULL, 0, '\0' }
};
@@ -86,6 +92,18 @@ static void usage(const char *prog) {
PRINTVALSTREAM(rawoutstream, " -n, --native Use a native HDF5 type when repacking\n");
PRINTVALSTREAM(rawoutstream, " --enable-error-stack Prints messages from the HDF5 error stack as they\n");
PRINTVALSTREAM(rawoutstream, " occur\n");
+ PRINTVALSTREAM(rawoutstream, " --src-vol-id ID of the VOL connector to use for opening the input\n");
+ PRINTVALSTREAM(rawoutstream, " HDF5 file specified\n");
+ PRINTVALSTREAM(rawoutstream, " --src-vol-name Name of the VOL connector to use for opening the input\n");
+ PRINTVALSTREAM(rawoutstream, " HDF5 file specified\n");
+ PRINTVALSTREAM(rawoutstream, " --src-vol-info VOL-specific info to pass to the VOL connector used for\n");
+ PRINTVALSTREAM(rawoutstream, " opening the input HDF5 file specified\n");
+ PRINTVALSTREAM(rawoutstream, " --dst-vol-id ID of the VOL connector to use for opening the output\n");
+ PRINTVALSTREAM(rawoutstream, " HDF5 file specified\n");
+ PRINTVALSTREAM(rawoutstream, " --dst-vol-name Name of the VOL connector to use for opening the output\n");
+ PRINTVALSTREAM(rawoutstream, " HDF5 file specified\n");
+ PRINTVALSTREAM(rawoutstream, " --dst-vol-info VOL-specific info to pass to the VOL connector used for\n");
+ PRINTVALSTREAM(rawoutstream, " opening the output HDF5 file specified\n");
PRINTVALSTREAM(rawoutstream, " -L, --latest Use latest version of file format\n");
PRINTVALSTREAM(rawoutstream, " This option will take precedence over the options\n");
PRINTVALSTREAM(rawoutstream, " --low and --high\n");
@@ -334,7 +352,7 @@ int read_info(const char *filename, pack_opt_t *options)
if (!HDstrcmp(stype, "-l")) {
if (h5repack_addlayout(comp_info, options) == -1) {
- error_msg("could not add chunck option\n");
+ error_msg("could not add chunk option\n");
h5tools_setstatus(EXIT_FAILURE);
ret_value = EXIT_FAILURE;
goto done;
@@ -412,9 +430,17 @@ set_sort_order(const char *form)
static
int parse_command_line(int argc, const char **argv, pack_opt_t* options)
{
+ h5tools_get_fapl_info_t get_in_vol_info;
+ h5tools_get_fapl_info_t get_out_vol_info;
+ hbool_t custom_in_fapl = FALSE;
+ hbool_t custom_out_fapl = FALSE;
+ hid_t tmp_fapl = H5I_INVALID_HID;
int bound, opt;
int ret_value = 0;
+ memset(&get_in_vol_info, 0, sizeof(h5tools_get_fapl_info_t));
+ memset(&get_out_vol_info, 0, sizeof(h5tools_get_fapl_info_t));
+
/* parse command line options */
while (EOF != (opt = get_option(argc, argv, s_opts, l_opts))) {
switch ((char) opt) {
@@ -434,13 +460,13 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options)
case 'h':
usage(h5tools_getprogname());
h5tools_setstatus(EXIT_SUCCESS);
- ret_value = -1;
+ ret_value = 1;
goto done;
case 'V':
print_version(h5tools_getprogname());
h5tools_setstatus(EXIT_SUCCESS);
- ret_value = -1;
+ ret_value = 1;
goto done;
case 'v':
@@ -478,9 +504,12 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options)
break;
case 'e':
- ret_value = read_info(opt_arg, options);
- if (ret_value < 0)
+ if ((ret_value = read_info(opt_arg, options)) < 0) {
+ error_msg("failed to read from repack options file <%s>\n", opt_arg);
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
goto done;
+ }
break;
case 'n':
@@ -495,6 +524,8 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options)
bound = HDatoi(opt_arg);
if (bound < H5F_LIBVER_EARLIEST || bound > H5F_LIBVER_LATEST) {
error_msg("in parsing low bound\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
goto done;
}
options->low_bound = bound;
@@ -504,6 +535,8 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options)
bound = HDatoi(opt_arg);
if (bound < H5F_LIBVER_EARLIEST || bound > H5F_LIBVER_LATEST) {
error_msg("in parsing high bound\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
goto done;
}
options->high_bound = bound;
@@ -625,8 +658,8 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options)
break;
case 'q':
- if (H5_INDEX_UNKNOWN == set_sort_by(opt_arg)) {
- error_msg(" failed to set sort by form <%s>\n", opt_arg);
+ if (H5_INDEX_UNKNOWN == (sort_by = set_sort_by(opt_arg))) {
+ error_msg("failed to set sort by form <%s>\n", opt_arg);
h5tools_setstatus(EXIT_FAILURE);
ret_value = -1;
goto done;
@@ -634,8 +667,8 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options)
break;
case 'z':
- if (set_sort_order(opt_arg) == H5_ITER_UNKNOWN) {
- error_msg(" failed to set sort order form <%s>\n", opt_arg);
+ if (H5_ITER_UNKNOWN == (sort_order = set_sort_order(opt_arg))) {
+ error_msg("failed to set sort order form <%s>\n", opt_arg);
h5tools_setstatus(EXIT_FAILURE);
ret_value = -1;
goto done;
@@ -646,6 +679,38 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options)
enable_error_stack = 1;
break;
+ case '1':
+ get_in_vol_info.get_type = GET_VOL_BY_ID;
+ get_in_vol_info.u.id = HDatol(opt_arg);
+ custom_in_fapl = TRUE;
+ break;
+
+ case '2':
+ get_in_vol_info.get_type = GET_VOL_BY_NAME;
+ get_in_vol_info.u.name = opt_arg;
+ custom_in_fapl = TRUE;
+ break;
+
+ case '3':
+ get_in_vol_info.info = opt_arg;
+ break;
+
+ case '4':
+ get_out_vol_info.get_type = GET_VOL_BY_ID;
+ get_out_vol_info.u.id = HDatol(opt_arg);
+ custom_out_fapl = TRUE;
+ break;
+
+ case '5':
+ get_out_vol_info.get_type = GET_VOL_BY_NAME;
+ get_out_vol_info.u.name = opt_arg;
+ custom_out_fapl = TRUE;
+ break;
+
+ case '6':
+ get_out_vol_info.info = opt_arg;
+ break;
+
default:
break;
} /* end switch */
@@ -653,30 +718,71 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options)
/* If neither -i nor -o given, get in and out files positionally */
if (0 == (has_i + has_o)) {
- if (argv[opt_ind] != NULL && argv[opt_ind + 1] != NULL) {
- infile = argv[opt_ind];
- outfile = argv[opt_ind + 1];
-
- if (!HDstrcmp(infile, outfile)) {
- error_msg("file names cannot be the same\n");
- usage(h5tools_getprogname());
- h5tools_setstatus(EXIT_FAILURE);
- ret_value = -1;
- }
- }
- else {
- error_msg("file names missing\n");
- usage(h5tools_getprogname());
- h5tools_setstatus(EXIT_FAILURE);
- ret_value = -1;
- }
- }
- else if (has_i != 1 || has_o != 1) {
- error_msg("filenames must be either both -i -o or both positional\n");
- usage(h5tools_getprogname());
- h5tools_setstatus(EXIT_FAILURE);
- ret_value = -1;
- }
+ if (argv[opt_ind] != NULL && argv[opt_ind + 1] != NULL) {
+ infile = argv[opt_ind];
+ outfile = argv[opt_ind + 1];
+
+ if (!HDstrcmp(infile, outfile)) {
+ error_msg("file names cannot be the same\n");
+ usage(h5tools_getprogname());
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
+ }
+ }
+ else {
+ error_msg("file names missing\n");
+ usage(h5tools_getprogname());
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
+ }
+ }
+ else if (has_i != 1 || has_o != 1) {
+ error_msg("filenames must be either both -i -o or both positional\n");
+ usage(h5tools_getprogname());
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
+ }
+
+ /* Setup FAPL for input and output file accesses */
+ if (custom_in_fapl) {
+ if ((tmp_fapl = h5tools_get_fapl(options->fin_fapl, &get_in_vol_info)) < 0) {
+ error_msg("failed to setup FAPL for input file\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
+ goto done;
+ }
+
+ /* Close old FAPL */
+ if (options->fin_fapl != H5P_DEFAULT)
+ if (H5Pclose(options->fin_fapl) < 0) {
+ error_msg("failed to close FAPL\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
+ goto done;
+ }
+
+ options->fin_fapl = tmp_fapl;
+ }
+
+ if (custom_out_fapl) {
+ if ((tmp_fapl = h5tools_get_fapl(options->fout_fapl, &get_out_vol_info)) < 0) {
+ error_msg("failed to setup FAPL for output file\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
+ goto done;
+ }
+
+ /* Close old FAPL */
+ if (options->fout_fapl != H5P_DEFAULT)
+ if (H5Pclose(options->fout_fapl) < 0) {
+ error_msg("failed to close FAPL\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ ret_value = -1;
+ goto done;
+ }
+
+ options->fout_fapl = tmp_fapl;
+ }
done:
return ret_value;
@@ -694,14 +800,18 @@ done:
*/
int main(int argc, const char **argv)
{
- pack_opt_t options; /*the global options */
+ pack_opt_t options; /*the global options */
H5E_auto2_t func;
H5E_auto2_t tools_func;
void *edata;
void *tools_edata;
+ int parse_ret;
HDmemset(&options, 0, sizeof(pack_opt_t));
+ /* Initialize h5tools lib */
+ h5tools_init();
+
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
@@ -709,29 +819,38 @@ int main(int argc, const char **argv)
H5Eget_auto2(H5E_DEFAULT, &func, &edata);
H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
- /* Initialize h5tools lib */
- h5tools_init();
-
/* Disable tools error reporting */
H5Eget_auto2(H5tools_ERR_STACK_g, &tools_func, &tools_edata);
H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
/* update hyperslab buffer size from H5TOOLS_BUFSIZE env if exist */
if (h5tools_getenv_update_hyperslab_bufsize() < 0) {
+ HDprintf("Error occurred while retrieving H5TOOLS_BUFSIZE value\n");
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
/* initialize options */
if (h5repack_init(&options, 0, FALSE) < 0) {
+ HDprintf("Error occurred while initializing repack options\n");
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
+
/* Initialize default indexing options */
sort_by = H5_INDEX_CRT_ORDER;
- if (parse_command_line(argc, argv, &options) < 0)
+ parse_ret = parse_command_line(argc, argv, &options);
+ if (parse_ret < 0) {
+ HDprintf("Error occurred while parsing command-line options\n");
+ h5tools_setstatus(EXIT_FAILURE);
goto done;
+ }
+ else if (parse_ret > 0) {
+ /* Short-circuit success */
+ h5tools_setstatus(EXIT_SUCCESS);
+ goto done;
+ }
if (enable_error_stack > 0) {
H5Eset_auto2(H5E_DEFAULT, func, edata);
@@ -739,9 +858,20 @@ int main(int argc, const char **argv)
}
/* pack it */
- h5tools_setstatus(h5repack(infile, outfile, &options));
+ if (h5repack(infile, outfile, &options) < 0) {
+ HDprintf("Error occurred while repacking\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
+
+ h5tools_setstatus(EXIT_SUCCESS);
done:
+ if (options.fin_fapl >= 0 && options.fin_fapl != H5P_DEFAULT)
+ H5Pclose(options.fin_fapl);
+ if (options.fout_fapl >= 0 && options.fout_fapl != H5P_DEFAULT)
+ H5Pclose(options.fout_fapl);
+
/* free tables */
h5repack_end(&options);
diff --git a/tools/src/h5repack/h5repack_verify.c b/tools/src/h5repack/h5repack_verify.c
index 683988c..7bb5dfd 100644
--- a/tools/src/h5repack/h5repack_verify.c
+++ b/tools/src/h5repack/h5repack_verify.c
@@ -353,16 +353,16 @@ int verify_layout(hid_t pid, pack_info_t *obj)
*-------------------------------------------------------------------------
*/
-int h5repack_cmp_pl(const char *fname1, const char *fname2)
+int h5repack_cmp_pl(const char *fname1, hid_t fname1_fapl, const char *fname2, hid_t fname2_fapl)
{
- hid_t fid1 =H5I_INVALID_HID; /* file ID */
- hid_t fid2 =H5I_INVALID_HID; /* file ID */
- hid_t dset1 =H5I_INVALID_HID; /* dataset ID */
- hid_t dset2 =H5I_INVALID_HID; /* dataset ID */
- hid_t gid =H5I_INVALID_HID; /* group ID */
- hid_t dcpl1 =H5I_INVALID_HID; /* dataset creation property list ID */
- hid_t dcpl2 =H5I_INVALID_HID; /* dataset creation property list ID */
- hid_t gcplid =H5I_INVALID_HID; /* group creation property list */
+ hid_t fid1 = H5I_INVALID_HID; /* file ID */
+ hid_t fid2 = H5I_INVALID_HID; /* file ID */
+ hid_t dset1 = H5I_INVALID_HID; /* dataset ID */
+ hid_t dset2 = H5I_INVALID_HID; /* dataset ID */
+ hid_t gid = H5I_INVALID_HID; /* group ID */
+ hid_t dcpl1 = H5I_INVALID_HID; /* dataset creation property list ID */
+ hid_t dcpl2 = H5I_INVALID_HID; /* dataset creation property list ID */
+ hid_t gcplid = H5I_INVALID_HID; /* group creation property list */
unsigned crt_order_flag1; /* group creation order flag */
unsigned crt_order_flag2; /* group creation order flag */
trav_table_t *trav = NULL;
@@ -374,9 +374,9 @@ int h5repack_cmp_pl(const char *fname1, const char *fname2)
*-------------------------------------------------------------------------
*/
/* Open the files */
- if ((fid1 = H5Fopen(fname1, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0)
+ if ((fid1 = h5tools_fopen(fname1, H5F_ACC_RDONLY, fname1_fapl, TRUE, NULL, 0)) < 0)
H5TOOLS_GOTO_ERROR((-1), "h5tools_fopen failed <%s>: %s", fname1, H5FOPENERROR);
- if ((fid2 = H5Fopen(fname2, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0)
+ if ((fid2 = h5tools_fopen(fname2, H5F_ACC_RDONLY, fname2_fapl, TRUE, NULL, 0)) < 0)
H5TOOLS_GOTO_ERROR((-1), "h5tools_fopen failed <%s>: %s", fname2, H5FOPENERROR);
/*-------------------------------------------------------------------------
diff --git a/tools/src/h5stat/h5stat.c b/tools/src/h5stat/h5stat.c
index adc905a..01e86fe 100644
--- a/tools/src/h5stat/h5stat.c
+++ b/tools/src/h5stat/h5stat.c
@@ -118,30 +118,28 @@ typedef struct iter_t {
} iter_t;
-static const char *drivername = "";
+static const char *drivername = NULL;
#ifdef H5_HAVE_ROS3_VFD
-/* default "anonymous" s3 configuration
- */
+/* Default "anonymous" S3 configuration */
static H5FD_ros3_fapl_t ros3_fa = {
- 1, /* fapl version */
- false, /* authenticate */
- "", /* aws region */
- "", /* access key id */
- "", /* secret access key */
+ 1, /* FAPL Version */
+ false, /* Authenticate? */
+ "", /* AWS Region */
+ "", /* Access Key ID */
+ "", /* Secret Access Key */
};
#endif /* H5_HAVE_ROS3_VFD */
#ifdef H5_HAVE_LIBHDFS
-/* default HDFS access configuration
- */
+/* "Default" HDFS configuration */
static H5FD_hdfs_fapl_t hdfs_fa = {
- 1, /* fapl version */
- "localhost", /* namenode name */
- 0, /* namenode port */
- "", /* kerberos ticket cache */
- "", /* user name */
- 2048, /* stream buffer size */
+ 1, /* FAPL Version */
+ "localhost", /* Namenode Name */
+ 0, /* Namenode Port */
+ "", /* Kerberos ticket cache */
+ "", /* User name */
+ 2048, /* Stream buffer size */
};
#endif /* H5_HAVE_LIBHDFS */
@@ -1065,103 +1063,32 @@ parse_command_line(int argc, const char *argv[], struct handler_t **hand_ret)
break;
case 'w':
-#ifndef H5_HAVE_ROS3_VFD
+#ifdef H5_HAVE_ROS3_VFD
+ if (h5tools_parse_ros3_fapl_tuple(opt_arg, ',', &ros3_fa) < 0) {
+ error_msg("failed to parse S3 VFD credential info\n");
+ goto error;
+ }
+
+ drivername = drivernames[ROS3_VFD_IDX];
+#else
error_msg("Read-Only S3 VFD not enabled.\n");
goto error;
-#else
- {
- char *cred_str = NULL;
- unsigned nelems = 0;
- char **cred = NULL;
- char const *ccred[3];
-
- if (FAIL == parse_tuple((const char *)opt_arg, ',', &cred_str, &nelems, &cred)) {
- error_msg("Unable to parse s3 credential\n");
- goto error;
- }
- if (nelems != 3) {
- error_msg("s3 credential must have three elements\n");
- goto error;
- }
- ccred[0] = (const char *)cred[0];
- ccred[1] = (const char *)cred[1];
- ccred[2] = (const char *)cred[2];
- if (0 == h5tools_populate_ros3_fapl(&ros3_fa, ccred)) {
- error_msg("Unable to set ros3 fapl config\n");
- goto error;
- }
- HDfree(cred);
- HDfree(cred_str);
- } /* parse s3-cred block */
- drivername = "ros3";
+#endif
break;
-#endif /* H5_HAVE_ROS3_VFD */
case 'H':
-#ifndef H5_HAVE_LIBHDFS
- error_msg("HDFS VFD is not enabled.\n");
- goto error;
-#else
- {
- unsigned nelems = 0;
- char *props_src = NULL;
- char **props = NULL;
- unsigned long k = 0;
- if (FAIL == parse_tuple((const char *)opt_arg,
- ',', &props_src, &nelems, &props)) {
- error_msg("unable to parse hdfs properties tuple\n");
- goto error;
- }
- /* sanity-check tuple count
- */
- if (nelems != 5) {
- char str[64] = "";
- HDsprintf(str,
- "expected 5 elements in hdfs properties tuple "
- "but found %u\n",
- nelems);
- HDfree(props);
- HDfree(props_src);
- error_msg(str);
- goto error;
- }
- /* Populate fapl configuration structure with given
- * properties.
- * TODO/WARNING: No error-checking is done on length of
- * input strings... Silent overflow is possible,
- * albeit unlikely.
- */
- if (HDstrncmp(props[0], "", 1)) {
- HDstrncpy(hdfs_fa.namenode_name,(const char *)props[0], HDstrlen(props[0]));
- }
- if (HDstrncmp(props[1], "", 1)) {
- k = strtoul((const char *)props[1], NULL, 0);
- if (errno == ERANGE) {
- error_msg("supposed port number wasn't.\n");
- goto error;
- }
- hdfs_fa.namenode_port = (int32_t)k;
- }
- if (HDstrncmp(props[2], "", 1)) {
- HDstrncpy(hdfs_fa.kerberos_ticket_cache, (const char *)props[2], HDstrlen(props[2]));
- }
- if (HDstrncmp(props[3], "", 1)) {
- HDstrncpy(hdfs_fa.user_name, (const char *)props[3], HDstrlen(props[3]));
- }
- if (strncmp(props[4], "", 1)) {
- k = HDstrtoul((const char *)props[4], NULL, 0);
- if (errno == ERANGE) {
- error_msg("supposed buffersize number wasn't.\n");
- goto error;
- }
- hdfs_fa.stream_buffer_size = (int32_t)k;
- }
- HDfree(props);
- HDfree(props_src);
- drivername = "hdfs";
+#ifdef H5_HAVE_LIBHDFS
+ if (h5tools_parse_hdfs_fapl_tuple(opt_arg, ',', &hdfs_fa) < 0) {
+ error_msg("failed to parse HDFS VFD configuration info\n");
+ goto error;
}
+
+ drivername = drivernames[HDFS_VFD_IDX];
+#else
+ error_msg("HDFS VFD not enabled.\n");
+ goto error;
+#endif
break;
-#endif /* H5_HAVE_LIBHDFS */
default:
usage(h5tools_getprogname());
@@ -1885,41 +1812,36 @@ main(int argc, const char *argv[])
if(parse_command_line(argc, argv, &hand) < 0)
goto done;
- /* if drivername is not null, probably need to set the fapl */
- if (HDstrcmp(drivername, "")) {
- void *conf_fa = NULL;
+ if (drivername) {
+ h5tools_get_fapl_info_t get_fapl_info;
- if (!HDstrcmp(drivername, "ros3")) {
-#ifndef H5_HAVE_ROS3_VFD
- error_msg("Read-Only S3 VFD not enabled.\n\n");
- goto done;
-#else
- conf_fa = (void *)&ros3_fa;
-#endif /* H5_HAVE_ROS3_VFD */
+ /* Currently, only retrieval of VFDs is supported. */
+ get_fapl_info.get_type = GET_VFD_BY_NAME;
+ get_fapl_info.info = NULL;
+ get_fapl_info.u.name = drivername;
- }
- else if (!HDstrcmp(drivername, "hdfs")) {
-#ifndef H5_HAVE_LIBHDFS
- error_msg("HDFS VFD not enabled.\n\n");
+ if (!HDstrcmp(drivername, drivernames[ROS3_VFD_IDX])) {
+#ifdef H5_HAVE_ROS3_VFD
+ get_fapl_info.info = (void *)&ros3_fa;
+#else
+ error_msg("Read-Only S3 VFD not enabled.\n");
goto done;
+#endif
+ }
+ else if (!HDstrcmp(drivername, drivernames[HDFS_VFD_IDX])) {
+#ifdef H5_HAVE_LIBHDFS
+ get_fapl_info.info = (void *)&hdfs_fa;
#else
- conf_fa = (void *)&hdfs_fa;
-#endif /* H5_HAVE_LIBHDFS */
+ error_msg("HDFS VFD not enabled.\n");
+ goto done;
+#endif
}
- if (conf_fa != NULL) {
- HDassert(fapl_id == H5P_DEFAULT);
- fapl_id = H5Pcreate(H5P_FILE_ACCESS);
- if (fapl_id < 0) {
- error_msg("Unable to create fapl entry\n");
- goto done;
- }
- if (1 > h5tools_set_configured_fapl(fapl_id, drivername, conf_fa)) {
- error_msg("Unable to set fapl\n");
- goto done;
- }
+ if ((fapl_id = h5tools_get_fapl(H5P_DEFAULT, &get_fapl_info)) < 0) {
+ error_msg("Unable to create FAPL for file access\n");
+ goto done;
}
- } /* drivername set */
+ }
fname = argv[opt_ind];
@@ -1935,7 +1857,9 @@ main(int argc, const char *argv[])
HDprintf("Filename: %s\n", fname);
- fid = H5Fopen(fname, H5F_ACC_RDONLY, fapl_id);
+ fid = h5tools_fopen(fname, H5F_ACC_RDONLY, fapl_id,
+ (fapl_id == H5P_DEFAULT) ? FALSE : TRUE, NULL, 0);
+
if(fid < 0) {
error_msg("unable to open file \"%s\"\n", fname);
h5tools_setstatus(EXIT_FAILURE);
diff --git a/tools/src/misc/h5clear.c b/tools/src/misc/h5clear.c
index 38fa6a2..2c85e75 100644
--- a/tools/src/misc/h5clear.c
+++ b/tools/src/misc/h5clear.c
@@ -267,6 +267,8 @@ main (int argc, const char *argv[])
/* initialize h5tools lib */
h5tools_init();
+ H5Eset_auto2(H5tools_ERR_STACK_g, NULL, NULL);
+
/* Parse command line options */
if(parse_command_line(argc, argv) < 0)
goto done;
@@ -339,7 +341,7 @@ main (int argc, const char *argv[])
}
/* Open the file */
- if((fid = h5tools_fopen(fname, flags, fapl, NULL, NULL, (size_t)0)) < 0) {
+ if((fid = h5tools_fopen(fname, flags, fapl, FALSE, NULL, (size_t)0)) < 0) {
error_msg("h5tools_fopen\n");
h5tools_setstatus(EXIT_FAILURE);
goto done;
diff --git a/tools/src/misc/h5mkgrp.c b/tools/src/misc/h5mkgrp.c
index feb60d4..a2cb68b 100644
--- a/tools/src/misc/h5mkgrp.c
+++ b/tools/src/misc/h5mkgrp.c
@@ -255,7 +255,7 @@ main(int argc, const char *argv[])
} /* end if */
/* Attempt to open an existing HDF5 file first */
- fid = h5tools_fopen(params.fname, H5F_ACC_RDWR, fapl_id, NULL, NULL, 0);
+ fid = h5tools_fopen(params.fname, H5F_ACC_RDWR, fapl_id, FALSE, NULL, 0);
/* If we couldn't open an existing file, try creating file */
/* (use "EXCL" instead of "TRUNC", so we don't blow away existing non-HDF5 file) */
diff --git a/tools/test/h5format_convert/h5fc_chk_idx.c b/tools/test/h5format_convert/h5fc_chk_idx.c
index ad1742b..02cc25f 100644
--- a/tools/test/h5format_convert/h5fc_chk_idx.c
+++ b/tools/test/h5format_convert/h5fc_chk_idx.c
@@ -60,7 +60,7 @@ main(int argc, char *argv[])
dname = HDstrdup(argv[2]);
/* Try opening the file */
- if((fid = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, (size_t)0)) < 0) {
+ if((fid = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, FALSE, NULL, (size_t)0)) < 0) {
HDfprintf(stderr, "h5fc_chk_idx: unable to open the file\n");
HDexit(EXIT_FAILURE);
} /* end if */
diff --git a/tools/test/h5repack/h5repacktst.c b/tools/test/h5repack/h5repacktst.c
index 2654685..ac1fbe0 100644
--- a/tools/test/h5repack/h5repacktst.c
+++ b/tools/test/h5repack/h5repacktst.c
@@ -382,7 +382,7 @@ int main (void)
GOERROR;
if (h5repack_verify(FNAME0, FNAME0OUT, &pack_options) <= 0)
GOERROR;
- if (h5repack_cmp_pl(FNAME0, FNAME0OUT) <= 0)
+ if (h5repack_cmp_pl(FNAME0, pack_options.fin_fapl, FNAME0OUT, pack_options.fout_fapl) <= 0)
GOERROR;
if (h5repack_end(&pack_options) < 0)
GOERROR;
@@ -402,7 +402,7 @@ int main (void)
GOERROR;
if (h5repack_verify(FNAME1, FNAME1OUT, &pack_options) <= 0)
GOERROR;
- if (h5repack_cmp_pl(FNAME1, FNAME1OUT) <= 0)
+ if (h5repack_cmp_pl(FNAME1, pack_options.fin_fapl, FNAME1OUT, pack_options.fout_fapl) <= 0)
GOERROR;
if (h5repack_end(&pack_options) < 0)
GOERROR;
@@ -422,7 +422,7 @@ int main (void)
GOERROR;
if (h5repack_verify(FNAME2, FNAME2OUT, &pack_options) <= 0)
GOERROR;
- if (h5repack_cmp_pl(FNAME2, FNAME2OUT) <= 0)
+ if (h5repack_cmp_pl(FNAME2, pack_options.fin_fapl, FNAME2OUT, pack_options.fout_fapl) <= 0)
GOERROR;
if (h5repack_end(&pack_options) < 0)
GOERROR;
@@ -441,7 +441,7 @@ int main (void)
GOERROR;
if (h5repack_verify(FNAME3, FNAME3OUT, &pack_options) <= 0)
GOERROR;
- if (h5repack_cmp_pl(FNAME3, FNAME3OUT) <= 0)
+ if (h5repack_cmp_pl(FNAME3, pack_options.fin_fapl, FNAME3OUT, pack_options.fout_fapl) <= 0)
GOERROR;
if (h5repack_end(&pack_options) < 0)
GOERROR;
@@ -1132,7 +1132,7 @@ int main (void)
GOERROR;
if (h5repack_verify(FNAME7, FNAME7OUT, &pack_options) <= 0)
GOERROR;
- if (h5repack_cmp_pl(FNAME7, FNAME7OUT) <= 0)
+ if (h5repack_cmp_pl(FNAME7, pack_options.fin_fapl, FNAME7OUT, pack_options.fout_fapl) <= 0)
GOERROR;
if (h5repack_end(&pack_options) < 0)
GOERROR;
diff --git a/tools/test/h5repack/testfiles/h5repack-help.txt b/tools/test/h5repack/testfiles/h5repack-help.txt
index 130cd72..fe02584 100644
--- a/tools/test/h5repack/testfiles/h5repack-help.txt
+++ b/tools/test/h5repack/testfiles/h5repack-help.txt
@@ -8,6 +8,18 @@ usage: h5repack [OPTIONS] file1 file2
-n, --native Use a native HDF5 type when repacking
--enable-error-stack Prints messages from the HDF5 error stack as they
occur
+ --src-vol-id ID of the VOL connector to use for opening the input
+ HDF5 file specified
+ --src-vol-name Name of the VOL connector to use for opening the input
+ HDF5 file specified
+ --src-vol-info VOL-specific info to pass to the VOL connector used for
+ opening the input HDF5 file specified
+ --dst-vol-id ID of the VOL connector to use for opening the output
+ HDF5 file specified
+ --dst-vol-name Name of the VOL connector to use for opening the output
+ HDF5 file specified
+ --dst-vol-info VOL-specific info to pass to the VOL connector used for
+ opening the output HDF5 file specified
-L, --latest Use latest version of file format
This option will take precedence over the options
--low and --high
diff --git a/tools/test/misc/clear_open_chk.c b/tools/test/misc/clear_open_chk.c
index 3a61385..7d22ca6 100644
--- a/tools/test/misc/clear_open_chk.c
+++ b/tools/test/misc/clear_open_chk.c
@@ -53,7 +53,7 @@ main(int argc, char *argv[])
fname = HDstrdup(argv[1]);
/* Try opening the file */
- if((fid = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, (size_t)0)) < 0) {
+ if((fid = h5tools_fopen(fname, H5F_ACC_RDONLY, H5P_DEFAULT, FALSE, NULL, (size_t)0)) < 0) {
HDfprintf(stderr, "clear_open_chk: unable to open the file\n");
HDfree(fname);
HDexit(EXIT_FAILURE);
generated by cgit v0.12 at 2024-11-09 20:58:22 (GMT)