diff options
Diffstat (limited to 'tools')
| -rw-r--r-- | tools/Makefile.am | 2 | ||||
| -rw-r--r-- | tools/Makefile.in | 2 | ||||
| -rw-r--r-- | tools/h5copy/Makefile.am | 36 | ||||
| -rw-r--r-- | tools/h5copy/Makefile.in | 833 | ||||
| -rw-r--r-- | tools/h5copy/h5copy.c | 355 | ||||
| -rw-r--r-- | tools/h5copy/testh5copy.sh | 64 |
6 files changed, 1290 insertions, 2 deletions
diff --git a/tools/Makefile.am b/tools/Makefile.am index ab89309..17e0bd8 100644 --- a/tools/Makefile.am +++ b/tools/Makefile.am @@ -21,6 +21,6 @@ include $(top_srcdir)/config/commence.am # All subdirectories -SUBDIRS=lib h5dump h5diff h5ls misc h5import h5repack h5jam +SUBDIRS=lib h5dump h5diff h5ls misc h5import h5repack h5jam h5copy include $(top_srcdir)/config/conclude.am diff --git a/tools/Makefile.in b/tools/Makefile.in index 6f8a7dd..94ec5e3 100644 --- a/tools/Makefile.in +++ b/tools/Makefile.in @@ -306,7 +306,7 @@ TRACE = perl $(top_srcdir)/bin/trace CHECK_CLEANFILES = *.chkexe *.chklog *.clog # All subdirectories -SUBDIRS = lib h5dump h5diff h5ls misc h5import h5repack h5jam +SUBDIRS = lib h5dump h5diff h5ls misc h5import h5repack h5jam h5copy # Automake needs to be taught how to build lib, progs, and tests targets. # These will be filled in automatically for the most part (e.g., diff --git a/tools/h5copy/Makefile.am b/tools/h5copy/Makefile.am new file mode 100644 index 0000000..9632c1b --- /dev/null +++ b/tools/h5copy/Makefile.am @@ -0,0 +1,36 @@ +# +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. +## +## Makefile.am +## Run automake to generate a Makefile.in from this file. +# +# HDF5 Library Makefile(.in) +# + +include $(top_srcdir)/config/commence.am + +# Include src and tools/lib directories +INCLUDES=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib + +# Test programs and scripts +TEST_SCRIPT=$(srcdir)/testh5copy.sh +check_SCRIPTS=$(TEST_SCRIPT) +SCRIPT_DEPEND=h5copy$(EXEEXT) + +# This is our main target, the h5copy tool +bin_PROGRAMS=h5copy + +# All programs depend on the hdf5 and h5tools libraries +LDADD=$(LIBH5TOOLS) $(LIBHDF5) + +include $(top_srcdir)/config/conclude.am diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in new file mode 100644 index 0000000..8860b86 --- /dev/null +++ b/tools/h5copy/Makefile.in @@ -0,0 +1,833 @@ +# Makefile.in generated by automake 1.9.5 from Makefile.am. +# @configure_input@ + +# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, +# 2003, 2004, 2005 Free Software Foundation, Inc. +# This Makefile.in is free software; the Free Software Foundation +# gives unlimited permission to copy and/or distribute it, +# with or without modifications, as long as this notice is preserved. + +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY, to the extent permitted by law; without +# even the implied warranty of MERCHANTABILITY or FITNESS FOR A +# PARTICULAR PURPOSE. + +@SET_MAKE@ + +# +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. +# +# HDF5 Library Makefile(.in) +# + +SOURCES = h5copy.c + +srcdir = @srcdir@ +top_srcdir = @top_srcdir@ +VPATH = @srcdir@ +pkgdatadir = $(datadir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkgincludedir = $(includedir)/@PACKAGE@ +top_builddir = ../.. +am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd +INSTALL = @INSTALL@ +install_sh_DATA = $(install_sh) -c -m 644 +install_sh_PROGRAM = $(install_sh) -c +install_sh_SCRIPT = $(install_sh) -c +INSTALL_HEADER = $(INSTALL_DATA) +transform = $(program_transform_name) +NORMAL_INSTALL = : +PRE_INSTALL = : +POST_INSTALL = : +NORMAL_UNINSTALL = : +PRE_UNINSTALL = : +POST_UNINSTALL = : +build_triplet = @build@ +host_triplet = @host@ +DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \ + $(top_srcdir)/config/commence.am \ + $(top_srcdir)/config/conclude.am +bin_PROGRAMS = h5copy$(EXEEXT) +subdir = tools/h5copy +ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 +am__aclocal_m4_deps = $(top_srcdir)/configure.in +am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) +mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs +CONFIG_HEADER = $(top_builddir)/src/H5config.h +CONFIG_CLEAN_FILES = +am__installdirs = "$(DESTDIR)$(bindir)" +binPROGRAMS_INSTALL = $(INSTALL_PROGRAM) +PROGRAMS = $(bin_PROGRAMS) +h5copy_SOURCES = h5copy.c +h5copy_OBJECTS = h5copy.$(OBJEXT) +h5copy_LDADD = $(LDADD) +am__DEPENDENCIES_1 = $(top_builddir)/tools/lib/libh5tools.la +am__DEPENDENCIES_2 = $(top_builddir)/src/libhdf5.la +h5copy_DEPENDENCIES = $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_2) +DEFAULT_INCLUDES = -I. -I$(srcdir) -I$(top_builddir)/src +depcomp = $(SHELL) $(top_srcdir)/bin/depcomp +am__depfiles_maybe = depfiles +COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ + $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) +LTCOMPILE = $(LIBTOOL) --tag=CC --mode=compile $(CC) $(DEFS) \ + $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \ + $(AM_CFLAGS) $(CFLAGS) +CCLD = $(CC) +LINK = $(LIBTOOL) --tag=CC --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ + $(AM_LDFLAGS) $(LDFLAGS) -o $@ +SOURCES = h5copy.c +DIST_SOURCES = h5copy.c +ETAGS = etags +CTAGS = ctags +DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) + +# Set the paths for AFS installs of autotools for Linux machines +# Ideally, these tools should never be needed during the build. +ACLOCAL = /afs/ncsa/projects/hdf/packages/automake_1.9.5/Linux_2.4/bin/aclocal -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal +ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ +AMDEP_FALSE = @AMDEP_FALSE@ +AMDEP_TRUE = @AMDEP_TRUE@ +AMTAR = @AMTAR@ +AM_MAKEFLAGS = @AM_MAKEFLAGS@ +AR = @AR@ +AUTOCONF = /afs/ncsa/projects/hdf/packages/autoconf_2.59/Linux_2.4/bin/autoconf +AUTOHEADER = /afs/ncsa/projects/hdf/packages/autoconf_2.59/Linux_2.4/bin/autoheader +AUTOMAKE = /afs/ncsa/projects/hdf/packages/automake_1.9.5/Linux_2.4/bin/automake +AWK = @AWK@ +BUILD_ALL_CONDITIONAL_FALSE = @BUILD_ALL_CONDITIONAL_FALSE@ +BUILD_ALL_CONDITIONAL_TRUE = @BUILD_ALL_CONDITIONAL_TRUE@ +BUILD_CXX_CONDITIONAL_FALSE = @BUILD_CXX_CONDITIONAL_FALSE@ +BUILD_CXX_CONDITIONAL_TRUE = @BUILD_CXX_CONDITIONAL_TRUE@ +BUILD_FORTRAN_CONDITIONAL_FALSE = @BUILD_FORTRAN_CONDITIONAL_FALSE@ +BUILD_FORTRAN_CONDITIONAL_TRUE = @BUILD_FORTRAN_CONDITIONAL_TRUE@ +BUILD_HDF5_HL_CONDITIONAL_FALSE = @BUILD_HDF5_HL_CONDITIONAL_FALSE@ +BUILD_HDF5_HL_CONDITIONAL_TRUE = @BUILD_HDF5_HL_CONDITIONAL_TRUE@ +BUILD_PABLO_CONDITIONAL_FALSE = @BUILD_PABLO_CONDITIONAL_FALSE@ +BUILD_PABLO_CONDITIONAL_TRUE = @BUILD_PABLO_CONDITIONAL_TRUE@ +BUILD_PARALLEL_CONDITIONAL_FALSE = @BUILD_PARALLEL_CONDITIONAL_FALSE@ +BUILD_PARALLEL_CONDITIONAL_TRUE = @BUILD_PARALLEL_CONDITIONAL_TRUE@ +BYTESEX = @BYTESEX@ +CC = @CC@ +CCDEPMODE = @CCDEPMODE@ +CC_VERSION = @CC_VERSION@ + +# H5_CFLAGS holds flags that should be used as CFLAGS when building hdf5, +# but which shouldn't be exported to h5cc for building other programs. +CFLAGS = @CFLAGS@ @H5_CFLAGS@ +CONFIG_DATE = @CONFIG_DATE@ +CONFIG_MODE = @CONFIG_MODE@ +CONFIG_USER = @CONFIG_USER@ +CPP = @CPP@ +CPPFLAGS = @CPPFLAGS@ @H5_CPPFLAGS@ +CXX = @CXX@ +CXXCPP = @CXXCPP@ +CXXDEPMODE = @CXXDEPMODE@ +CXXFLAGS = @CXXFLAGS@ @H5_CXXFLAGS@ +CXX_SHARED_CONDITIONAL_FALSE = @CXX_SHARED_CONDITIONAL_FALSE@ +CXX_SHARED_CONDITIONAL_TRUE = @CXX_SHARED_CONDITIONAL_TRUE@ +CYGPATH_W = @CYGPATH_W@ +DEBUG_PKG = @DEBUG_PKG@ +DEFS = @DEFS@ +DEPDIR = @DEPDIR@ +DYNAMIC_DIRS = @DYNAMIC_DIRS@ +ECHO = @ECHO@ +ECHO_C = @ECHO_C@ +ECHO_N = @ECHO_N@ +ECHO_T = @ECHO_T@ +EGREP = @EGREP@ +EXEEXT = @EXEEXT@ +F77 = @F77@ + +# Make sure that these variables are exported to the Makefiles +F9XMODEXT = @F9XMODEXT@ +F9XMODFLAG = @F9XMODFLAG@ +F9XSUFFIXFLAG = @F9XSUFFIXFLAG@ +FC = @FC@ +FCFLAGS = @FCFLAGS@ @H5_FCFLAGS@ +FCLIBS = @FCLIBS@ +FFLAGS = @FFLAGS@ +FILTERS = @FILTERS@ +FORTRAN_SHARED_CONDITIONAL_FALSE = @FORTRAN_SHARED_CONDITIONAL_FALSE@ +FORTRAN_SHARED_CONDITIONAL_TRUE = @FORTRAN_SHARED_CONDITIONAL_TRUE@ +FSEARCH_DIRS = @FSEARCH_DIRS@ +H5_CFLAGS = @H5_CFLAGS@ +H5_CPPFLAGS = @H5_CPPFLAGS@ +H5_CXXFLAGS = @H5_CXXFLAGS@ +H5_FCFLAGS = @H5_FCFLAGS@ +H5_LONE_COLON = @H5_LONE_COLON@ +H5_VERSION = @H5_VERSION@ +HADDR_T = @HADDR_T@ +HDF5_INTERFACES = @HDF5_INTERFACES@ +HID_T = @HID_T@ +HL = @HL@ +HL_FOR = @HL_FOR@ +HSIZET = @HSIZET@ +HSIZE_T = @HSIZE_T@ +HSSIZE_T = @HSSIZE_T@ +INSTALL_DATA = @INSTALL_DATA@ +INSTALL_PROGRAM = @INSTALL_PROGRAM@ +INSTALL_SCRIPT = @INSTALL_SCRIPT@ +INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ +INSTRUMENT_LIBRARY = @INSTRUMENT_LIBRARY@ +LDFLAGS = @LDFLAGS@ +LIBOBJS = @LIBOBJS@ +LIBS = @LIBS@ +LIBTOOL = @LIBTOOL@ +LN_S = @LN_S@ +LTLIBOBJS = @LTLIBOBJS@ +LT_STATIC_EXEC = @LT_STATIC_EXEC@ +MAINT = @MAINT@ +MAINTAINER_MODE_FALSE = @MAINTAINER_MODE_FALSE@ +MAINTAINER_MODE_TRUE = @MAINTAINER_MODE_TRUE@ +MAKEINFO = @MAKEINFO@ +MPE = @MPE@ +OBJECT_NAMELEN_DEFAULT_F = @OBJECT_NAMELEN_DEFAULT_F@ +OBJEXT = @OBJEXT@ +PACKAGE = @PACKAGE@ +PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ +PACKAGE_NAME = @PACKAGE_NAME@ +PACKAGE_STRING = @PACKAGE_STRING@ +PACKAGE_TARNAME = @PACKAGE_TARNAME@ +PACKAGE_VERSION = @PACKAGE_VERSION@ +PARALLEL = @PARALLEL@ +PATH_SEPARATOR = @PATH_SEPARATOR@ +PERL = @PERL@ +PTHREAD = @PTHREAD@ +RANLIB = @RANLIB@ +ROOT = @ROOT@ +RUNPARALLEL = @RUNPARALLEL@ +RUNSERIAL = @RUNSERIAL@ +R_INTEGER = @R_INTEGER@ +R_LARGE = @R_LARGE@ +SEARCH = @SEARCH@ +SETX = @SETX@ +SET_MAKE = @SET_MAKE@ + +# Hardcode SHELL to be /bin/sh. Most machines have this shell, and +# on at least one machine configure fails to detect its existence (janus). +# Also, when HDF5 is configured on one machine but run on another, +# configure's automatic SHELL detection may not work on the build machine. +SHELL = /bin/sh +SIZE_T = @SIZE_T@ +STATIC_SHARED = @STATIC_SHARED@ +STRIP = @STRIP@ +TESTPARALLEL = @TESTPARALLEL@ +TRACE_API = @TRACE_API@ +USE_FILTER_DEFLATE = @USE_FILTER_DEFLATE@ +USE_FILTER_FLETCHER32 = @USE_FILTER_FLETCHER32@ +USE_FILTER_NBIT = @USE_FILTER_NBIT@ +USE_FILTER_SCALEOFFSET = @USE_FILTER_SCALEOFFSET@ +USE_FILTER_SHUFFLE = @USE_FILTER_SHUFFLE@ +USE_FILTER_SZIP = @USE_FILTER_SZIP@ +VERSION = @VERSION@ +ac_ct_AR = @ac_ct_AR@ +ac_ct_CC = @ac_ct_CC@ +ac_ct_CXX = @ac_ct_CXX@ +ac_ct_F77 = @ac_ct_F77@ +ac_ct_FC = @ac_ct_FC@ +ac_ct_RANLIB = @ac_ct_RANLIB@ +ac_ct_STRIP = @ac_ct_STRIP@ +am__fastdepCC_FALSE = @am__fastdepCC_FALSE@ +am__fastdepCC_TRUE = @am__fastdepCC_TRUE@ +am__fastdepCXX_FALSE = @am__fastdepCXX_FALSE@ +am__fastdepCXX_TRUE = @am__fastdepCXX_TRUE@ +am__include = @am__include@ +am__leading_dot = @am__leading_dot@ +am__quote = @am__quote@ +am__tar = @am__tar@ +am__untar = @am__untar@ +bindir = @bindir@ +build = @build@ +build_alias = @build_alias@ +build_cpu = @build_cpu@ +build_os = @build_os@ +build_vendor = @build_vendor@ +datadir = @datadir@ +exec_prefix = @exec_prefix@ +host = @host@ +host_alias = @host_alias@ +host_cpu = @host_cpu@ +host_os = @host_os@ +host_vendor = @host_vendor@ + +# Install directories that automake doesn't know about +includedir = $(exec_prefix)/include +infodir = @infodir@ +install_sh = @install_sh@ +libdir = @libdir@ +libexecdir = @libexecdir@ +localstatedir = @localstatedir@ +mandir = @mandir@ +mkdir_p = @mkdir_p@ +oldincludedir = @oldincludedir@ +prefix = @prefix@ +program_transform_name = @program_transform_name@ +sbindir = @sbindir@ +sharedstatedir = @sharedstatedir@ +sysconfdir = @sysconfdir@ +target_alias = @target_alias@ + +# Shell commands used in Makefiles +RM = rm -f +CP = cp +TIME = time + +# Some machines need a command to run executables; this is that command +# so that our tests will run. +# We use RUNTESTS instead of RUNSERIAL directly because it may be that +# some tests need to be run with a different command. Older versions +# of the makefiles used the command +# $(LIBTOOL) --mode=execute +# in some directories, for instance. +RUNTESTS = $(RUNSERIAL) + +# Libraries to link to while building +LIBHDF5 = $(top_builddir)/src/libhdf5.la +LIBH5TEST = $(top_builddir)/test/libh5test.la +LIBH5F = $(top_builddir)/fortran/src/libhdf5_fortran.la +LIBH5FTEST = $(top_builddir)/fortran/test/libh5test_fortran.la +LIBH5CPP = $(top_builddir)/c++/src/libhdf5_cpp.la +LIBH5TOOLS = $(top_builddir)/tools/lib/libh5tools.la +LIBH5_HL = $(top_builddir)/hl/src/libhdf5_hl.la +LIBH5F_HL = $(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la +LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la +docdir = $(exec_prefix)/doc + +# Scripts used to build examples +# If only shared libraries have been installed, have h5cc build examples with +# shared libraries instead of static libraries +H5CC = $(bindir)/h5cc $(H5CCFLAGS) +H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS) +H5FC = $(bindir)/h5fc $(H5CCFLAGS) +H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS) +H5CPP = $(bindir)/h5c++ $(H5CCFLAGS) + +# The trace script; this is used on source files from the C library to +# insert tracing macros. +TRACE = perl $(top_srcdir)/bin/trace + +# .chkexe files are used to mark tests that have run successfully. +# .chklog files are output from those tests. +# *.clog are from the MPE option. +CHECK_CLEANFILES = *.chkexe *.chklog *.clog + +# Include src and tools/lib directories +INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib + +# Test programs and scripts +TEST_SCRIPT = $(srcdir)/testh5copy.sh +check_SCRIPTS = $(TEST_SCRIPT) +SCRIPT_DEPEND = h5copy$(EXEEXT) + +# All programs depend on the hdf5 and h5tools libraries +LDADD = $(LIBH5TOOLS) $(LIBHDF5) + +# Automake needs to be taught how to build lib, progs, and tests targets. +# These will be filled in automatically for the most part (e.g., +# lib_LIBRARIES are built for lib target), but EXTRA_LIB, EXTRA_PROG, and +# EXTRA_TEST variables are supplied to allow the user to force targets to +# be built at certain times. +LIB = $(lib_LIBRARIES) $(lib_LTLIBRARIES) $(noinst_LIBRARIES) \ + $(noinst_LTLIBRARIES) $(check_LIBRARIES) $(check_LTLIBRARIES) $(EXTRA_LIB) + +PROGS = $(bin_PROGRAMS) $(bin_SCRIPTS) $(noinst_PROGRAMS) $(noinst_SCRIPTS) \ + $(EXTRA_PROG) + +TESTS = $(check_PROGRAMS) $(check_SCRIPTS) $(EXTRA_TEST) +TEST_PROG_CHKEXE = $(TEST_PROG:=.chkexe_) +TEST_PROG_PARA_CHKEXE = $(TEST_PROG_PARA:=.chkexe_) +TEST_SCRIPT_CHKSH = $(TEST_SCRIPT:=.chkexe_) +TEST_SCRIPT_PARA_CHKSH = $(TEST_SCRIPT_PARA:=.chkexe_) +all: all-am + +.SUFFIXES: +.SUFFIXES: .c .lo .o .obj +$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir)/config/commence.am $(top_srcdir)/config/conclude.am $(am__configure_deps) + @for dep in $?; do \ + case '$(am__configure_deps)' in \ + *$$dep*) \ + cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh \ + && exit 0; \ + exit 1;; \ + esac; \ + done; \ + echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5copy/Makefile'; \ + cd $(top_srcdir) && \ + $(AUTOMAKE) --foreign tools/h5copy/Makefile +.PRECIOUS: Makefile +Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ + *config.status*) \ + cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \ + *) \ + echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ + cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ + esac; + +$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) + cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh + +$(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) + cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +$(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) + cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +install-binPROGRAMS: $(bin_PROGRAMS) + @$(NORMAL_INSTALL) + test -z "$(bindir)" || $(mkdir_p) "$(DESTDIR)$(bindir)" + @list='$(bin_PROGRAMS)'; for p in $$list; do \ + p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ + if test -f $$p \ + || test -f $$p1 \ + ; then \ + f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \ + echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \ + $(INSTALL_PROGRAM_ENV) $(LIBTOOL) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \ + else :; fi; \ + done + +uninstall-binPROGRAMS: + @$(NORMAL_UNINSTALL) + @list='$(bin_PROGRAMS)'; for p in $$list; do \ + f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \ + echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \ + rm -f "$(DESTDIR)$(bindir)/$$f"; \ + done + +clean-binPROGRAMS: + @list='$(bin_PROGRAMS)'; for p in $$list; do \ + f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f $$p $$f"; \ + rm -f $$p $$f ; \ + done +h5copy$(EXEEXT): $(h5copy_OBJECTS) $(h5copy_DEPENDENCIES) + @rm -f h5copy$(EXEEXT) + $(LINK) $(h5copy_LDFLAGS) $(h5copy_OBJECTS) $(h5copy_LDADD) $(LIBS) + +mostlyclean-compile: + -rm -f *.$(OBJEXT) + +distclean-compile: + -rm -f *.tab.c + +@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/h5copy.Po@am__quote@ + +.c.o: +@am__fastdepCC_TRUE@ if $(COMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ $<; 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E.g.,"; \ + echo " HDF5_PARAPREFIX=/PFS/user/me"; \ + echo " export HDF5_PARAPREFIX"; \ + echo " make check"; \ + echo "**** end of Hint ****"; \ + fi + @for test in $(TEST_PROG_PARA) dummy; do \ + if test $$test != dummy; then \ + $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \ + RUNTESTS="$(RUNPARALLEL)" || exit 1; \ + fi; \ + done + @for test in $(TEST_SCRIPT_PARA) dummy; do \ + if test $$test != dummy; then \ + $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \ + fi; \ + done + @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ + echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\ + fi + +# Run test with different Virtual File Driver +check-vfd: + @for vfd in $(VFD_LIST) dummy; do \ + if test $$vfd != dummy; then \ + echo "============================"; \ + echo "Testing Virtual File Driver $$vfd"; \ + echo "============================"; \ + HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check; \ + fi; \ + done +# Tell versions [3.59,3.63) of GNU make to not export all variables. +# Otherwise a system limit (for SysV at least) may be exceeded. +.NOEXPORT: diff --git a/tools/h5copy/h5copy.c b/tools/h5copy/h5copy.c new file mode 100644 index 0000000..604eb03 --- /dev/null +++ b/tools/h5copy/h5copy.c @@ -0,0 +1,355 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the files COPYING and Copyright.html. COPYING can be found at the root * + * of the source code distribution tree; Copyright.html can be found at the * + * root level of an installed copy of the electronic HDF5 document set and * + * is linked from the top-level documents page. It can also be found at * + * http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have * + * access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + + +#include "hdf5.h" +#include "h5tools.h" +#include "H5private.h" +#include <string.h> +#include <stdlib.h> + +const char *progname="h5copy"; +int d_status; + +/*------------------------------------------------------------------------- + * Function: usage + * + * Purpose: Prints a usage message on stderr and then returns. + * + * Return: void + * + * Programmer: Pedro Vicente Nunes, 7/8/2006 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ +static void +usage (void) +{ + fprintf(stderr, "\ +usage: h5copy [OPTIONS] [OBJECTS...]\n\ + OBJECTS\n\ + A pair of 2 HDF5 files (input and output). Each file name\n\ + is optionally followed by a slash and an object\n\ + name within the file (if no object is specified\n\ + within the file then all objects are copied)\n\ + OPTIONS\n\ + -h Print a usage message and exit\n\ + -v Print information about OBJECTS and OPTIONS\n\ + -f Flag type\n\n\ + Flag type is one of the following strings:\n\n\ + SHALLOW (Copy only immediate members for groups)\n\ + SOFT (Expand soft links into new objects)\n\ + EXT (Expand external links into new objects)\n\ + REF (Copy objects that are pointed by references)\n\ + ATTR (Copy object without copying attributes)\n\n\ + These flag types correspond to the following API symbols\n\n\ + H5G_COPY_SHALLOW_HIERARCHY_FLAG\n\ + H5G_COPY_EXPAND_SOFT_LINK_FLAG\n\ + H5G_COPY_EXPAND_EXT_LINK_FLAG\n\ + H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG\n\ + H5G_COPY_WITHOUT_ATTR_FLAG\n"); +} + + + +/*------------------------------------------------------------------------- + * Function: parse_flag + * + * Purpose: read the flag -f STRING + * + * STRING is one of the following (API symbol and description) + * + * SHALLOW H5G_COPY_SHALLOW_HIERARCHY_FLAG: Copy only immediate members for groups + * SOFT H5G_COPY_EXPAND_SOFT_LINK_FLAG: Expand soft links into new objects + * EXT H5G_COPY_EXPAND_EXT_LINK_FLAG: Expand external links into new objects + * REF H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG: Copy objects that are pointed by references + * ATTR H5G_COPY_WITHOUT_ATTR_FLAG Copy object without copying attributes + * + * Return: Success: SUCCEED + * Failure: FAIL + * + * Programmer: Pedro Vicente Nunes, 7/8/2006 + * + * Modifications: + * + *------------------------------------------------------------------------- + */ + + +static int parse_flag(const char* str_flag, unsigned *flag) +{ + unsigned fla=0; + + if (strcmp(str_flag,"SHALLOW")==0) + { + fla = H5G_COPY_SHALLOW_HIERARCHY_FLAG; + } + else if (strcmp(str_flag,"SOFT")==0) + { + fla = H5G_COPY_EXPAND_SOFT_LINK_FLAG; + } + else if (strcmp(str_flag,"EXT")==0) + { + fla = H5G_COPY_EXPAND_EXT_LINK_FLAG; + } + else if (strcmp(str_flag,"REF")==0) + { + fla = H5G_COPY_EXPAND_OBJ_REFERENCE_FLAG; + } + else if (strcmp(str_flag,"ATTR")==0) + { + fla = H5G_COPY_WITHOUT_ATTR_FLAG; + } + else + { + printf("Error in input flag\n"); + return -1; + } + + *flag = fla; + + return 0; +} + + + + +/*------------------------------------------------------------------------- + * Function: main + * + * Purpose: main program + * + * Programmer: Pedro Vicente Nunes + * + * Modifications: + * + *------------------------------------------------------------------------- + */ + +int +main (int argc, const char *argv[]) +{ + hid_t fid_src=-1; + hid_t fid_dst=-1; + int argno; + static char root_name[] = "/"; + char *fname_src=NULL; + char *fname_dst=NULL; + char *oname_src=NULL; + char *oname_dst=NULL; + char *x; + unsigned flag=0; + int verbose=0; + hid_t pid; + char str_flag[20]; + + /* switches come before non-switch arguments */ + for (argno=1; argno<argc && '-'==argv[argno][0]; argno++) + { + if (strcmp(argv[argno], "-h") == 0) + { + usage(); + } + else if (strcmp(argv[argno], "-v") == 0) + { + verbose = 1; + } + else if (strcmp(argv[argno], "-f") == 0) + { + /* parse flag */ + if (parse_flag(argv[argno+1],&flag)<0) + { + usage(); + exit(1); + } + strcpy(str_flag,argv[argno+1]); + + /* jump to next */ + ++argno; + } + } + + + /* no more arguments remain */ + if (argno>=argc) + { + usage(); + exit(1); + } + +/*------------------------------------------------------------------------- + * + * each remaining argument is an hdf5 file name followed by an optional slash + * and object name. + * + * Example: test1.h5/bar/baz + * \______/\______/ + * file obj + * + * The dichotomy is determined by calling H5Fopen() repeatedly until it + * succeeds. The first call uses the entire name and each subsequent call + * chops off the last component. If we reach the beginning of the name + * then there must have been something wrong with the file (perhaps it + * doesn't exist). + * + *-------------------------------------------------------------------------*/ + + fname_src = HDstrdup(argv[argno++]); + + while (fname_src && *fname_src) + { + fid_src = h5tools_fopen(fname_src, NULL, NULL, 0, argc, argv); + + if (fid_src>=0) + break; /*success*/ + + /* shorten the file name; lengthen the object name */ + x = oname_src; + oname_src = strrchr(fname_src, '/'); + if (x) + *x = '/'; + if (!oname_src) + break; + *oname_src = '\0'; + } + if (oname_src) + oname_src++; + if (!oname_src || !*oname_src) + oname_src = root_name; + + +/*------------------------------------------------------------------------- + * last argument, same logic, but the file does not exist, so we attempt to + * create one instead + *-------------------------------------------------------------------------*/ + + fname_dst = HDstrdup(argv[argno]); + + while (fname_dst && *fname_dst) + { + H5E_BEGIN_TRY { + fid_dst = H5Fcreate(fname_dst, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + } H5E_END_TRY; + + if (fid_dst>=0) + break; /*success*/ + + /* shorten the file name; lengthen the object name */ + x = oname_dst; + oname_dst = strrchr(fname_dst, '/'); + if (x) + *x = '/'; + if (!oname_dst) + break; + *oname_dst = '\0'; + } + if (oname_dst) + oname_dst++; + if (!oname_dst || !*oname_dst) + oname_dst = NULL; + + +/*------------------------------------------------------------------------- + * check destination name + *-------------------------------------------------------------------------*/ + + if (oname_dst==NULL) + { + printf("Destination object name missing\n"); + usage(); + goto error; + } + + +/*------------------------------------------------------------------------- + * print some info + *-------------------------------------------------------------------------*/ + + if (verbose) + { + printf("Copying file <%s> and object <%s> to file <%s> and object <%s>\n", + fname_src, + oname_src, + fname_dst, + oname_dst); + if (flag) + printf("Using %s flag\n", str_flag); + } + + +/*------------------------------------------------------------------------- + * create a property list for copy + *-------------------------------------------------------------------------*/ + + /* create property to pass copy options */ + if ( (pid = H5Pcreate(H5P_OBJECT_COPY)) < 0) + goto error; + + /* set options for object copy */ + if (flag) + { + if ( H5Pset_copy_object(pid, flag) < 0) + goto error; + } + + +/*------------------------------------------------------------------------- + * do the copy + *-------------------------------------------------------------------------*/ + + if (H5Gcopy(fid_src, /* Source file or group identifier */ + oname_src, /* Name of the source object to be copied */ + fid_dst, /* Destination file or group identifier */ + oname_dst, /* Name of the destination object */ + pid, /* Properties which apply to the copy */ + H5P_DEFAULT)<0) /* Properties which apply to the new hard link */ + goto error; + + + + /* close property */ + if (H5Pclose(pid)<0) + goto error; + + if (fid_src>0) + H5Fclose(fid_src); + if (fid_dst>0) + H5Fclose(fid_dst); + + if (fname_src) + free(fname_src); + if (fname_dst) + free(fname_dst); + + + return 0; + +error: + printf("Error in copy...Exiting\n"); + H5E_BEGIN_TRY { + H5Pclose(pid); + H5Fclose(fid_src); + H5Fclose(fid_dst); + } H5E_END_TRY; + if (fname_src) + free(fname_src); + if (fname_dst) + free(fname_dst); + + + return 1; +} + diff --git a/tools/h5copy/testh5copy.sh b/tools/h5copy/testh5copy.sh new file mode 100644 index 0000000..c755503 --- /dev/null +++ b/tools/h5copy/testh5copy.sh @@ -0,0 +1,64 @@ +#! /bin/sh +# +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the files COPYING and Copyright.html. COPYING can be found at the root +# of the source code distribution tree; Copyright.html can be found at the +# root level of an installed copy of the electronic HDF5 document set and +# is linked from the top-level documents page. It can also be found at +# http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have +# access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. +# +# Tests for the h5copy tool + +H5COPY=h5copy # The tool name +H5COPY_BIN=`pwd`/$H5COPY # The path of the tool binary + +nerrors=0 + +# The build (current) directory might be different than the source directory. +if test -z "$srcdir"; then + srcdir=. +fi +test -d ../testfiles || mkdir ../testfiles + +# Print a line-line message left justified in a field of 70 characters +# beginning with the word "Testing". +TESTING() { + SPACES=" " + echo "Testing $* $SPACES" |cut -c1-70 |tr -d '\012' +} + +# Run a test and print PASS or *FAIL*. If h5copy can complete +# with exit status 0, consider it pass. If a test fails then increment +# the `nerrors' global variable. + +TOOLTEST() { + + TESTING $H5COPY $@ + + +} + + + + + +############################################################################## +############################################################################## +### T H E T E S T S ### +############################################################################## +############################################################################## + + +#TOOLTEST -v test1.h5/array test1.out.h5/array + + +#if test $nerrors -eq 0 ; then +# echo "All h5copy tests passed." +#fi + +#exit $nerrors |