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-rw-r--r--tools/h5dump/CMakeLists.txt541
-rw-r--r--tools/h5dump/h5dump.c3790
-rw-r--r--tools/h5dump/h5dump.h2
-rw-r--r--tools/h5dump/testh5dump.sh.in151
-rw-r--r--tools/h5import/CMakeLists.txt10
-rw-r--r--tools/h5jam/CMakeLists.txt10
-rw-r--r--tools/lib/h5tools.c14
-rw-r--r--tools/lib/h5tools.h3
-rw-r--r--tools/lib/h5tools_str.c20
-rw-r--r--tools/testfiles/tnofilename-with-packed-bits.ddl2
-rw-r--r--tools/testfiles/tpbitsIncomplete.ddl2
-rw-r--r--tools/testfiles/tpbitsLengthExceeded.ddl2
-rw-r--r--tools/testfiles/tpbitsLengthPositive.ddl2
-rw-r--r--tools/testfiles/tpbitsMaxExceeded.ddl2
-rw-r--r--tools/testfiles/tpbitsOffsetExceeded.ddl2
-rw-r--r--tools/testfiles/tpbitsOffsetNegative.ddl2
16 files changed, 2288 insertions, 2267 deletions
diff --git a/tools/h5dump/CMakeLists.txt b/tools/h5dump/CMakeLists.txt
index a02388a..2032057 100644
--- a/tools/h5dump/CMakeLists.txt
+++ b/tools/h5dump/CMakeLists.txt
@@ -399,78 +399,75 @@ IF (BUILD_TESTING)
ENDIF (WIN32 AND NOT CYGWIN)
# --------------------------------------------------------------------
- # Special option for Packed Bits
+ # Packed Bits
# --------------------------------------------------------------------
- IF (HDF5_USE_H5DUMP_PACKED_BITS)
- #-- Copy all the HDF5 files from the test directory into the source directory
- SET (HDF5_REFERENCE_PBITS
- tnofilename-with-packed-bits.ddl
- tpbitsArray.ddl
- tpbitsCompound.ddl
- tpbitsIncomplete.ddl
- tpbitsLengthExceeded.ddl
- tpbitsCharLengthExceeded.ddl
- tpbitsIntLengthExceeded.ddl
- tpbitsLongLengthExceeded.ddl
- tpbitsLengthPositive.ddl
- tpbitsMax.ddl
- tpbitsMaxExceeded.ddl
- tpbitsOffsetExceeded.ddl
- tpbitsCharOffsetExceeded.ddl
- tpbitsIntOffsetExceeded.ddl
- tpbitsLongOffsetExceeded.ddl
- tpbitsOffsetNegative.ddl
- tpbitsOverlapped.ddl
- tpbitsSigned.ddl
- tpbitsUnsigned.ddl
- tpbitsSignedInt.ddl
- tpbitsUnsignedInt.ddl
- tpbitsSignedLong.ddl
- tpbitsUnsignedLong.ddl
- tpbitsSignedLongLong.ddl
- tpbitsUnsignedLongLong.ddl
- tpbitsSignedWhole.ddl
- tpbitsUnsignedWhole.ddl
- tpbitsSignedIntWhole.ddl
- tpbitsUnsignedIntWhole.ddl
- tpbitsSignedLongWhole.ddl
- tpbitsUnsignedLongWhole.ddl
- tpbitsSignedLongLongWhole.ddl
- tpbitsUnsignedLongLongWhole.ddl
- tpbitsSignedLongLongWhole1.ddl
- tpbitsUnsignedLongLongWhole1.ddl
- tpbitsSignedLongLongWhole63.ddl
- tpbitsUnsignedLongLongWhole63.ddl
- tpbitsSigned4.ddl
- tpbitsUnsigned4.ddl
- tpbitsSignedInt8.ddl
- tpbitsUnsignedInt8.ddl
- tpbitsSignedLong16.ddl
- tpbitsUnsignedLong16.ddl
- tpbitsSignedLongLong32.ddl
- tpbitsUnsignedLongLong32.ddl
- tpbitsSigned2.ddl
- tpbitsUnsigned2.ddl
- tpbitsSignedInt4.ddl
- tpbitsUnsignedInt4.ddl
- tpbitsSignedLong8.ddl
- tpbitsUnsignedLong8.ddl
- tpbitsSignedLongLong16.ddl
- tpbitsUnsignedLongLong16.ddl
- )
-
- FOREACH (ddl_pbits ${HDF5_REFERENCE_PBITS})
- SET (ddldest "${PROJECT_BINARY_DIR}/${ddl_pbits}")
- #MESSAGE (STATUS " Translating ${ddl_pbits}")
- ADD_CUSTOM_COMMAND (
- TARGET h5dump
- POST_BUILD
- COMMAND ${XLATE_UTILITY}
- ARGS ${HDF5_TOOLS_SRC_DIR}/testfiles/${ddl_pbits} ${ddldest} -l3
- )
- ENDFOREACH (ddl_pbits ${HDF5_REFERENCE_PBITS})
+ #-- Copy all the HDF5 files from the test directory into the source directory
+ SET (HDF5_REFERENCE_PBITS
+ tnofilename-with-packed-bits.ddl
+ tpbitsArray.ddl
+ tpbitsCompound.ddl
+ tpbitsIncomplete.ddl
+ tpbitsLengthExceeded.ddl
+ tpbitsCharLengthExceeded.ddl
+ tpbitsIntLengthExceeded.ddl
+ tpbitsLongLengthExceeded.ddl
+ tpbitsLengthPositive.ddl
+ tpbitsMax.ddl
+ tpbitsMaxExceeded.ddl
+ tpbitsOffsetExceeded.ddl
+ tpbitsCharOffsetExceeded.ddl
+ tpbitsIntOffsetExceeded.ddl
+ tpbitsLongOffsetExceeded.ddl
+ tpbitsOffsetNegative.ddl
+ tpbitsOverlapped.ddl
+ tpbitsSigned.ddl
+ tpbitsUnsigned.ddl
+ tpbitsSignedInt.ddl
+ tpbitsUnsignedInt.ddl
+ tpbitsSignedLong.ddl
+ tpbitsUnsignedLong.ddl
+ tpbitsSignedLongLong.ddl
+ tpbitsUnsignedLongLong.ddl
+ tpbitsSignedWhole.ddl
+ tpbitsUnsignedWhole.ddl
+ tpbitsSignedIntWhole.ddl
+ tpbitsUnsignedIntWhole.ddl
+ tpbitsSignedLongWhole.ddl
+ tpbitsUnsignedLongWhole.ddl
+ tpbitsSignedLongLongWhole.ddl
+ tpbitsUnsignedLongLongWhole.ddl
+ tpbitsSignedLongLongWhole1.ddl
+ tpbitsUnsignedLongLongWhole1.ddl
+ tpbitsSignedLongLongWhole63.ddl
+ tpbitsUnsignedLongLongWhole63.ddl
+ tpbitsSigned4.ddl
+ tpbitsUnsigned4.ddl
+ tpbitsSignedInt8.ddl
+ tpbitsUnsignedInt8.ddl
+ tpbitsSignedLong16.ddl
+ tpbitsUnsignedLong16.ddl
+ tpbitsSignedLongLong32.ddl
+ tpbitsUnsignedLongLong32.ddl
+ tpbitsSigned2.ddl
+ tpbitsUnsigned2.ddl
+ tpbitsSignedInt4.ddl
+ tpbitsUnsignedInt4.ddl
+ tpbitsSignedLong8.ddl
+ tpbitsUnsignedLong8.ddl
+ tpbitsSignedLongLong16.ddl
+ tpbitsUnsignedLongLong16.ddl
+ )
- ENDIF (HDF5_USE_H5DUMP_PACKED_BITS)
+ FOREACH (ddl_pbits ${HDF5_REFERENCE_PBITS})
+ SET (ddldest "${PROJECT_BINARY_DIR}/${ddl_pbits}")
+ #MESSAGE (STATUS " Translating ${ddl_pbits}")
+ ADD_CUSTOM_COMMAND (
+ TARGET h5dump
+ POST_BUILD
+ COMMAND ${XLATE_UTILITY}
+ ARGS ${HDF5_TOOLS_SRC_DIR}/testfiles/${ddl_pbits} ${ddldest} -l3
+ )
+ ENDFOREACH (ddl_pbits ${HDF5_REFERENCE_PBITS})
##############################################################################
##############################################################################
@@ -608,11 +605,6 @@ IF (BUILD_TESTING)
SET (USE_FILTER_NBIT H5_HAVE_FILTER_NBIT)
SET (USE_FILTER_SCALEOFFSET H5_HAVE_FILTER_SCALEOFFSET)
- # --------------------------------------------------------------------
- # Determine if H5dump packed bits feature is included
- # --------------------------------------------------------------------
- SET (USE_PACKED_BITS HDF5_USE_H5DUMP_PACKED_BITS)
-
##############################################################################
##############################################################################
### T H E T E S T S ###
@@ -974,14 +966,7 @@ IF (BUILD_TESTING)
# test printing characters in ASCII instead of decimal
ADD_H5_TEST (tchar1 0 -r tchar.h5)
- # test failure handling
- IF (NOT HDF5_USE_H5DUMP_PACKED_BITS)
- # Missing file name
- ADD_H5_TEST (tnofilename 1)
- ENDIF (NOT HDF5_USE_H5DUMP_PACKED_BITS)
-
# rev. 2004
-
# tests for super block
ADD_H5_TEST (tboot1 0 -H -B -d dset tfcontents1.h5)
ADD_H5_TEST (tboot2 0 -B tfcontents2.h5)
@@ -1200,203 +1185,201 @@ IF (BUILD_TESTING)
ADD_H5_TEST (tall-6 0 -y -o data -d /g1/g1.1/dset1.1.1 tall.h5)
####### test for dataset packed bits ######
- IF (HDF5_USE_H5DUMP_PACKED_BITS)
- # Remove any output file left over from previous test run
- ADD_TEST (
- NAME H5DUMP_PACKED_BITS-clearall-objects
- COMMAND ${CMAKE_COMMAND}
- -E remove
- tnofilename-with-packed-bits.out
- tnofilename-with-packed-bits.out.err
- tpbitsArray.out
- tpbitsArray.out.err
- tpbitsCompound.out
- tpbitsCompound.out.err
- tpbitsIncomplete.out
- tpbitsIncomplete.out.err
- tpbitsLengthExceeded.out
- tpbitsLengthExceeded.out.err
- tpbitsCharLengthExceeded.out
- tpbitsCharLengthExceeded.out.err
- tpbitsIntLengthExceeded.out
- tpbitsIntLengthExceeded.out.err
- tpbitsLongLengthExceeded.out
- tpbitsLongLengthExceeded.out.err
- tpbitsLengthPositive.out
- tpbitsLengthPositive.out.err
- tpbitsMax.out
- tpbitsMax.out.err
- tpbitsMaxExceeded.out
- tpbitsMaxExceeded.out.err
- tpbitsOffsetExceeded.out
- tpbitsOffsetExceeded.out.err
- tpbitsCharOffsetExceeded.out
- tpbitsCharOffsetExceeded.out.err
- tpbitsIntOffsetExceeded.out
- tpbitsIntOffsetExceeded.out.err
- tpbitsLongOffsetExceeded.out
- tpbitsLongOffsetExceeded.out.err
- tpbitsOffsetNegative.out
- tpbitsOffsetNegative.out.err
- tpbitsOverlapped.out
- tpbitsOverlapped.out.err
- tpbitsSigned.out
- tpbitsSigned.out.err
- tpbitsUnsigned.out
- tpbitsUnsigned.out.err
- tpbitsSignedInt.out
- tpbitsSignedInt.out.err
- tpbitsUnsignedInt.out
- tpbitsUnsignedInt.out.err
- tpbitsSignedLong.out
- tpbitsSignedLong.out.err
- tpbitsUnsignedLong.out
- tpbitsUnsignedLong.out.err
- tpbitsSignedLongLong.out
- tpbitsSignedLongLong.out.err
- tpbitsUnsignedLongLong.out
- tpbitsUnsignedLongLong.out.err
- tpbitsSignedWhole.out
- tpbitsSignedWhole.out.err
- tpbitsUnsignedWhole.out
- tpbitsUnsignedWhole.out.err
- tpbitsSignedIntWhole.out
- tpbitsSignedIntWhole.out.err
- tpbitsUnsignedIntWhole.out
- tpbitsUnsignedIntWhole.out.err
- tpbitsSignedLongWhole.out
- tpbitsSignedLongWhole.out.err
- tpbitsUnsignedLongWhole.out
- tpbitsUnsignedLongWhole.out.err
- tpbitsSignedLongLongWhole.out
- tpbitsSignedLongLongWhole.out.err
- tpbitsUnsignedLongLongWhole.out
- tpbitsUnsignedLongLongWhole.out.err
- tpbitsSignedLongLongWhole1.out
- tpbitsSignedLongLongWhole1.out.err
- tpbitsUnsignedLongLongWhole1.out
- tpbitsUnsignedLongLongWhole1.out.err
- tpbitsSignedLongLongWhole63.out
- tpbitsSignedLongLongWhole63.out.err
- tpbitsUnsignedLongLongWhole63.out
- tpbitsUnsignedLongLongWhole63.out.err
- tpbitsSigned4.out
- tpbitsSigned4.out.err
- tpbitsUnsigned4.out
- tpbitsUnsigned4.out.err
- tpbitsSignedInt8.out
- tpbitsSignedInt8.out.err
- tpbitsUnsignedInt8.out
- tpbitsUnsignedInt8.out.err
- tpbitsSignedLong16.out
- tpbitsSignedLong16.out.err
- tpbitsUnsignedLong16.out
- tpbitsUnsignedLong16.out.err
- tpbitsSignedLongLong32.out
- tpbitsSignedLongLong32.out.err
- tpbitsUnsignedLongLong32.out
- tpbitsUnsignedLongLong32.out.err
- tpbitsSigned2.out
- tpbitsSigned2.out.err
- tpbitsUnsigned2.out
- tpbitsUnsigned2.out.err
- tpbitsSignedInt4.out
- tpbitsSignedInt4.out.err
- tpbitsUnsignedInt4.out
- tpbitsUnsignedInt4.out.err
- tpbitsSignedLong8.out
- tpbitsSignedLong8.out.err
- tpbitsUnsignedLong8.out
- tpbitsUnsignedLong8.out.err
- tpbitsSignedLongLong16.out
- tpbitsSignedLongLong16.out.err
- tpbitsUnsignedLongLong16.out
- tpbitsUnsignedLongLong16.out.err
- )
- IF (NOT "${last_test}" STREQUAL "")
- SET_TESTS_PROPERTIES (H5DUMP_PACKED_BITS-clearall-objects PROPERTIES DEPENDS ${last_test})
- ENDIF (NOT "${last_test}" STREQUAL "")
- SET (last_test "H5DUMP_PACKED_BITS-clearall-objects")
-
- # test failure handling
- # Missing file name
- ADD_H5_TEST (tnofilename-with-packed-bits 1)
- # Limits:
- # Maximum number of packed bits is 8 (for now).
- # Maximum integer size is 8*sizeof(long long).
- # Maximun Offset is Maximum size - 1.
- # Maximum Offset+Length is Maximum size.
- # Tests:
- # Normal operation on both signed and unsigned int datasets.
- # Sanity check
- # Their rawdata output should be the same.
- ADD_H5_TEST (tpbitsSignedWhole 0 -d /DS08BITS -M 0,8 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsignedWhole 0 -d /DU08BITS -M 0,8 packedbits.h5)
- ADD_H5_TEST (tpbitsSignedIntWhole 0 -d /DS16BITS -M 0,16 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsignedIntWhole 0 -d /DU16BITS -M 0,16 packedbits.h5)
- ADD_H5_TEST (tpbitsSignedLongWhole 0 -d /DS32BITS -M 0,32 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsignedLongWhole 0 -d /DU32BITS -M 0,32 packedbits.h5)
- ADD_H5_TEST (tpbitsSignedLongLongWhole 0 -d /DS64BITS -M 0,64 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsignedLongLongWhole 0 -d /DU64BITS -M 0,64 packedbits.h5)
- ADD_H5_TEST (tpbitsSignedLongLongWhole63 0 -d /DS64BITS -M 0,63 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsignedLongLongWhole63 0 -d /DU64BITS -M 0,63 packedbits.h5)
- ADD_H5_TEST (tpbitsSignedLongLongWhole1 0 -d /DS64BITS -M 1,63 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsignedLongLongWhole1 0 -d /DU64BITS -M 1,63 packedbits.h5)
- # Half sections
- ADD_H5_TEST (tpbitsSigned4 0 -d /DS08BITS -M 0,4,4,4 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsigned4 0 -d /DU08BITS -M 0,4,4,4 packedbits.h5)
- ADD_H5_TEST (tpbitsSignedInt8 0 -d /DS16BITS -M 0,8,8,8 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsignedInt8 0 -d /DU16BITS -M 0,8,8,8 packedbits.h5)
- ADD_H5_TEST (tpbitsSignedLong16 0 -d /DS32BITS -M 0,16,16,16 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsignedLong16 0 -d /DU32BITS -M 0,16,16,16 packedbits.h5)
- ADD_H5_TEST (tpbitsSignedLongLong32 0 -d /DS64BITS -M 0,32,32,32 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsignedLongLong32 0 -d /DU64BITS -M 0,32,32,32 packedbits.h5)
- # Quarter sections
- ADD_H5_TEST (tpbitsSigned2 0 -d /DS08BITS -M 0,2,2,2,4,2,6,2 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsigned2 0 -d /DU08BITS -M 0,2,2,2,4,2,6,2 packedbits.h5)
- ADD_H5_TEST (tpbitsSignedInt4 0 -d /DS16BITS -M 0,4,4,4,8,4,12,4 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsignedInt4 0 -d /DU16BITS -M 0,4,4,4,8,4,12,4 packedbits.h5)
- ADD_H5_TEST (tpbitsSignedLong8 0 -d /DS32BITS -M 0,8,8,8,16,8,24,8 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsignedLong8 0 -d /DU32BITS -M 0,8,8,8,16,8,24,8 packedbits.h5)
- ADD_H5_TEST (tpbitsSignedLongLong16 0 -d /DS64BITS -M 0,16,16,16,32,16,48,16 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsignedLongLong16 0 -d /DU64BITS -M 0,16,16,16,32,16,48,16 packedbits.h5)
- # Begin and End
- ADD_H5_TEST (tpbitsSigned 0 -d /DS08BITS -M 0,2,2,6 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsigned 0 -d /DU08BITS -M 0,2,2,6 packedbits.h5)
- ADD_H5_TEST (tpbitsSignedInt 0 -d /DS16BITS -M 0,2,10,6 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsignedInt 0 -d /DU16BITS -M 0,2,10,6 packedbits.h5)
- ADD_H5_TEST (tpbitsSignedLong 0 -d /DS32BITS -M 0,2,26,6 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsignedLong 0 -d /DU32BITS -M 0,2,26,6 packedbits.h5)
- ADD_H5_TEST (tpbitsSignedLongLong 0 -d /DS64BITS -M 0,2,58,6 packedbits.h5)
- ADD_H5_TEST (tpbitsUnsignedLongLong 0 -d /DU64BITS -M 0,2,58,6 packedbits.h5)
- # Overlapped packed bits.
- ADD_H5_TEST (tpbitsOverlapped 0 -d /DS08BITS -M 0,1,1,1,2,1,0,3 packedbits.h5)
- # Maximum number of packed bits.
- ADD_H5_TEST (tpbitsMax 0 -d /DS08BITS -M 0,1,1,1,2,1,3,1,4,1,5,1,6,1,7,1 packedbits.h5)
- # Compound type.
- ADD_H5_TEST (tpbitsCompound 0 -d /dset1 -M 0,1,1,1 tcompound.h5)
- # Array type.
- ADD_H5_TEST (tpbitsArray 0 -d /Dataset1 -M 0,1,1,1 tarray1.h5)
- # Test Error handling.
- # Too many packed bits requested. Max is 8 for now.
- ADD_H5_TEST (tpbitsMaxExceeded 1 -d /DS08BITS -M 0,1,0,1,1,1,2,1,3,1,4,1,5,1,6,1,7,1 packedbits.h5)
- # Offset too large. Max is 8*sizeof(long long.
- ADD_H5_TEST (tpbitsOffsetExceeded 1 -d /DS08BITS -M 64,1 packedbits.h5)
- ADD_H5_TEST (tpbitsCharOffsetExceeded 0 -d /DS08BITS -M 8,1 packedbits.h5)
- ADD_H5_TEST (tpbitsIntOffsetExceeded 0 -d /DS16BITS -M 16,1 packedbits.h5)
- ADD_H5_TEST (tpbitsLongOffsetExceeded 0 -d /DS32BITS -M 32,1 packedbits.h5)
- # Bad offset, must not be negative.
- ADD_H5_TEST (tpbitsOffsetNegative 1 -d /DS08BITS -M -1,1 packedbits.h5)
- # Bad length, must not be positive.
- ADD_H5_TEST (tpbitsLengthPositive 1 -d /DS08BITS -M 4,0 packedbits.h5)
- # Offset+Length is too large. Max is 8*sizeof(long long).
- ADD_H5_TEST (tpbitsLengthExceeded 1 -d /DS08BITS -M 37,28 packedbits.h5)
- ADD_H5_TEST (tpbitsCharLengthExceeded 0 -d /DS08BITS -M 2,7 packedbits.h5)
- ADD_H5_TEST (tpbitsIntLengthExceeded 0 -d /DS16BITS -M 10,7 packedbits.h5)
- ADD_H5_TEST (tpbitsLongLengthExceeded 0 -d /DS32BITS -M 26,7 packedbits.h5)
- # Incomplete pair of packed bits request.
- ADD_H5_TEST (tpbitsIncomplete 1 -d /DS08BITS -M 0,2,2,1,0,2,2, packedbits.h5)
- ENDIF (HDF5_USE_H5DUMP_PACKED_BITS)
+ # Remove any output file left over from previous test run
+ ADD_TEST (
+ NAME H5DUMP_PACKED_BITS-clearall-objects
+ COMMAND ${CMAKE_COMMAND}
+ -E remove
+ tnofilename-with-packed-bits.out
+ tnofilename-with-packed-bits.out.err
+ tpbitsArray.out
+ tpbitsArray.out.err
+ tpbitsCompound.out
+ tpbitsCompound.out.err
+ tpbitsIncomplete.out
+ tpbitsIncomplete.out.err
+ tpbitsLengthExceeded.out
+ tpbitsLengthExceeded.out.err
+ tpbitsCharLengthExceeded.out
+ tpbitsCharLengthExceeded.out.err
+ tpbitsIntLengthExceeded.out
+ tpbitsIntLengthExceeded.out.err
+ tpbitsLongLengthExceeded.out
+ tpbitsLongLengthExceeded.out.err
+ tpbitsLengthPositive.out
+ tpbitsLengthPositive.out.err
+ tpbitsMax.out
+ tpbitsMax.out.err
+ tpbitsMaxExceeded.out
+ tpbitsMaxExceeded.out.err
+ tpbitsOffsetExceeded.out
+ tpbitsOffsetExceeded.out.err
+ tpbitsCharOffsetExceeded.out
+ tpbitsCharOffsetExceeded.out.err
+ tpbitsIntOffsetExceeded.out
+ tpbitsIntOffsetExceeded.out.err
+ tpbitsLongOffsetExceeded.out
+ tpbitsLongOffsetExceeded.out.err
+ tpbitsOffsetNegative.out
+ tpbitsOffsetNegative.out.err
+ tpbitsOverlapped.out
+ tpbitsOverlapped.out.err
+ tpbitsSigned.out
+ tpbitsSigned.out.err
+ tpbitsUnsigned.out
+ tpbitsUnsigned.out.err
+ tpbitsSignedInt.out
+ tpbitsSignedInt.out.err
+ tpbitsUnsignedInt.out
+ tpbitsUnsignedInt.out.err
+ tpbitsSignedLong.out
+ tpbitsSignedLong.out.err
+ tpbitsUnsignedLong.out
+ tpbitsUnsignedLong.out.err
+ tpbitsSignedLongLong.out
+ tpbitsSignedLongLong.out.err
+ tpbitsUnsignedLongLong.out
+ tpbitsUnsignedLongLong.out.err
+ tpbitsSignedWhole.out
+ tpbitsSignedWhole.out.err
+ tpbitsUnsignedWhole.out
+ tpbitsUnsignedWhole.out.err
+ tpbitsSignedIntWhole.out
+ tpbitsSignedIntWhole.out.err
+ tpbitsUnsignedIntWhole.out
+ tpbitsUnsignedIntWhole.out.err
+ tpbitsSignedLongWhole.out
+ tpbitsSignedLongWhole.out.err
+ tpbitsUnsignedLongWhole.out
+ tpbitsUnsignedLongWhole.out.err
+ tpbitsSignedLongLongWhole.out
+ tpbitsSignedLongLongWhole.out.err
+ tpbitsUnsignedLongLongWhole.out
+ tpbitsUnsignedLongLongWhole.out.err
+ tpbitsSignedLongLongWhole1.out
+ tpbitsSignedLongLongWhole1.out.err
+ tpbitsUnsignedLongLongWhole1.out
+ tpbitsUnsignedLongLongWhole1.out.err
+ tpbitsSignedLongLongWhole63.out
+ tpbitsSignedLongLongWhole63.out.err
+ tpbitsUnsignedLongLongWhole63.out
+ tpbitsUnsignedLongLongWhole63.out.err
+ tpbitsSigned4.out
+ tpbitsSigned4.out.err
+ tpbitsUnsigned4.out
+ tpbitsUnsigned4.out.err
+ tpbitsSignedInt8.out
+ tpbitsSignedInt8.out.err
+ tpbitsUnsignedInt8.out
+ tpbitsUnsignedInt8.out.err
+ tpbitsSignedLong16.out
+ tpbitsSignedLong16.out.err
+ tpbitsUnsignedLong16.out
+ tpbitsUnsignedLong16.out.err
+ tpbitsSignedLongLong32.out
+ tpbitsSignedLongLong32.out.err
+ tpbitsUnsignedLongLong32.out
+ tpbitsUnsignedLongLong32.out.err
+ tpbitsSigned2.out
+ tpbitsSigned2.out.err
+ tpbitsUnsigned2.out
+ tpbitsUnsigned2.out.err
+ tpbitsSignedInt4.out
+ tpbitsSignedInt4.out.err
+ tpbitsUnsignedInt4.out
+ tpbitsUnsignedInt4.out.err
+ tpbitsSignedLong8.out
+ tpbitsSignedLong8.out.err
+ tpbitsUnsignedLong8.out
+ tpbitsUnsignedLong8.out.err
+ tpbitsSignedLongLong16.out
+ tpbitsSignedLongLong16.out.err
+ tpbitsUnsignedLongLong16.out
+ tpbitsUnsignedLongLong16.out.err
+ )
+ IF (NOT "${last_test}" STREQUAL "")
+ SET_TESTS_PROPERTIES (H5DUMP_PACKED_BITS-clearall-objects PROPERTIES DEPENDS ${last_test})
+ ENDIF (NOT "${last_test}" STREQUAL "")
+ SET (last_test "H5DUMP_PACKED_BITS-clearall-objects")
+
+ # test failure handling
+ # Missing file name
+ ADD_H5_TEST (tnofilename-with-packed-bits 1)
+ # Limits:
+ # Maximum number of packed bits is 8 (for now).
+ # Maximum integer size is 8*sizeof(long long).
+ # Maximun Offset is Maximum size - 1.
+ # Maximum Offset+Length is Maximum size.
+ # Tests:
+ # Normal operation on both signed and unsigned int datasets.
+ # Sanity check
+ # Their rawdata output should be the same.
+ ADD_H5_TEST (tpbitsSignedWhole 0 -d /DS08BITS -M 0,8 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsignedWhole 0 -d /DU08BITS -M 0,8 packedbits.h5)
+ ADD_H5_TEST (tpbitsSignedIntWhole 0 -d /DS16BITS -M 0,16 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsignedIntWhole 0 -d /DU16BITS -M 0,16 packedbits.h5)
+ ADD_H5_TEST (tpbitsSignedLongWhole 0 -d /DS32BITS -M 0,32 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsignedLongWhole 0 -d /DU32BITS -M 0,32 packedbits.h5)
+ ADD_H5_TEST (tpbitsSignedLongLongWhole 0 -d /DS64BITS -M 0,64 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsignedLongLongWhole 0 -d /DU64BITS -M 0,64 packedbits.h5)
+ ADD_H5_TEST (tpbitsSignedLongLongWhole63 0 -d /DS64BITS -M 0,63 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsignedLongLongWhole63 0 -d /DU64BITS -M 0,63 packedbits.h5)
+ ADD_H5_TEST (tpbitsSignedLongLongWhole1 0 -d /DS64BITS -M 1,63 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsignedLongLongWhole1 0 -d /DU64BITS -M 1,63 packedbits.h5)
+ # Half sections
+ ADD_H5_TEST (tpbitsSigned4 0 -d /DS08BITS -M 0,4,4,4 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsigned4 0 -d /DU08BITS -M 0,4,4,4 packedbits.h5)
+ ADD_H5_TEST (tpbitsSignedInt8 0 -d /DS16BITS -M 0,8,8,8 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsignedInt8 0 -d /DU16BITS -M 0,8,8,8 packedbits.h5)
+ ADD_H5_TEST (tpbitsSignedLong16 0 -d /DS32BITS -M 0,16,16,16 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsignedLong16 0 -d /DU32BITS -M 0,16,16,16 packedbits.h5)
+ ADD_H5_TEST (tpbitsSignedLongLong32 0 -d /DS64BITS -M 0,32,32,32 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsignedLongLong32 0 -d /DU64BITS -M 0,32,32,32 packedbits.h5)
+ # Quarter sections
+ ADD_H5_TEST (tpbitsSigned2 0 -d /DS08BITS -M 0,2,2,2,4,2,6,2 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsigned2 0 -d /DU08BITS -M 0,2,2,2,4,2,6,2 packedbits.h5)
+ ADD_H5_TEST (tpbitsSignedInt4 0 -d /DS16BITS -M 0,4,4,4,8,4,12,4 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsignedInt4 0 -d /DU16BITS -M 0,4,4,4,8,4,12,4 packedbits.h5)
+ ADD_H5_TEST (tpbitsSignedLong8 0 -d /DS32BITS -M 0,8,8,8,16,8,24,8 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsignedLong8 0 -d /DU32BITS -M 0,8,8,8,16,8,24,8 packedbits.h5)
+ ADD_H5_TEST (tpbitsSignedLongLong16 0 -d /DS64BITS -M 0,16,16,16,32,16,48,16 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsignedLongLong16 0 -d /DU64BITS -M 0,16,16,16,32,16,48,16 packedbits.h5)
+ # Begin and End
+ ADD_H5_TEST (tpbitsSigned 0 -d /DS08BITS -M 0,2,2,6 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsigned 0 -d /DU08BITS -M 0,2,2,6 packedbits.h5)
+ ADD_H5_TEST (tpbitsSignedInt 0 -d /DS16BITS -M 0,2,10,6 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsignedInt 0 -d /DU16BITS -M 0,2,10,6 packedbits.h5)
+ ADD_H5_TEST (tpbitsSignedLong 0 -d /DS32BITS -M 0,2,26,6 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsignedLong 0 -d /DU32BITS -M 0,2,26,6 packedbits.h5)
+ ADD_H5_TEST (tpbitsSignedLongLong 0 -d /DS64BITS -M 0,2,58,6 packedbits.h5)
+ ADD_H5_TEST (tpbitsUnsignedLongLong 0 -d /DU64BITS -M 0,2,58,6 packedbits.h5)
+ # Overlapped packed bits.
+ ADD_H5_TEST (tpbitsOverlapped 0 -d /DS08BITS -M 0,1,1,1,2,1,0,3 packedbits.h5)
+ # Maximum number of packed bits.
+ ADD_H5_TEST (tpbitsMax 0 -d /DS08BITS -M 0,1,1,1,2,1,3,1,4,1,5,1,6,1,7,1 packedbits.h5)
+ # Compound type.
+ ADD_H5_TEST (tpbitsCompound 0 -d /dset1 -M 0,1,1,1 tcompound.h5)
+ # Array type.
+ ADD_H5_TEST (tpbitsArray 0 -d /Dataset1 -M 0,1,1,1 tarray1.h5)
+ # Test Error handling.
+ # Too many packed bits requested. Max is 8 for now.
+ ADD_H5_TEST (tpbitsMaxExceeded 1 -d /DS08BITS -M 0,1,0,1,1,1,2,1,3,1,4,1,5,1,6,1,7,1 packedbits.h5)
+ # Offset too large. Max is 8*sizeof(long long.
+ ADD_H5_TEST (tpbitsOffsetExceeded 1 -d /DS08BITS -M 64,1 packedbits.h5)
+ ADD_H5_TEST (tpbitsCharOffsetExceeded 0 -d /DS08BITS -M 8,1 packedbits.h5)
+ ADD_H5_TEST (tpbitsIntOffsetExceeded 0 -d /DS16BITS -M 16,1 packedbits.h5)
+ ADD_H5_TEST (tpbitsLongOffsetExceeded 0 -d /DS32BITS -M 32,1 packedbits.h5)
+ # Bad offset, must not be negative.
+ ADD_H5_TEST (tpbitsOffsetNegative 1 -d /DS08BITS -M -1,1 packedbits.h5)
+ # Bad length, must not be positive.
+ ADD_H5_TEST (tpbitsLengthPositive 1 -d /DS08BITS -M 4,0 packedbits.h5)
+ # Offset+Length is too large. Max is 8*sizeof(long long).
+ ADD_H5_TEST (tpbitsLengthExceeded 1 -d /DS08BITS -M 37,28 packedbits.h5)
+ ADD_H5_TEST (tpbitsCharLengthExceeded 0 -d /DS08BITS -M 2,7 packedbits.h5)
+ ADD_H5_TEST (tpbitsIntLengthExceeded 0 -d /DS16BITS -M 10,7 packedbits.h5)
+ ADD_H5_TEST (tpbitsLongLengthExceeded 0 -d /DS32BITS -M 26,7 packedbits.h5)
+ # Incomplete pair of packed bits request.
+ ADD_H5_TEST (tpbitsIncomplete 1 -d /DS08BITS -M 0,2,2,1,0,2,2, packedbits.h5)
# Remove any output file left over from previous test run
ADD_TEST (
diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c
index da6e806..05ec369 100644
--- a/tools/h5dump/h5dump.c
+++ b/tools/h5dump/h5dump.c
@@ -27,23 +27,23 @@
/* Macros for displaying objects */
#define begin_obj(obj,name,begin) \
- do { \
+ do { \
if (name) \
- printf("%s \"%s\" %s\n", (obj), (name), (begin)); \
+ HDfprintf(stdout, "%s \"%s\" %s\n", (obj), (name), (begin)); \
else \
- printf("%s %s\n", (obj), (begin)); \
+ HDfprintf(stdout, "%s %s\n", (obj), (begin)); \
} while(0);
#define end_obj(obj,end) \
- do { \
+ do { \
if(HDstrlen(end)) { \
- printf("%s", end); \
+ HDfprintf(stdout, "%s", end); \
if(HDstrlen(obj)) \
- printf(" "); \
+ HDfprintf(stdout, " "); \
} \
if(HDstrlen(obj)) \
- printf("%s", obj); \
- printf("\n"); \
+ HDfprintf(stdout, "%s", obj); \
+ HDfprintf(stdout, "\n"); \
} while(0);
/* 3 private values: can't be set, but can be read.
@@ -72,7 +72,7 @@ static h5dump_table_list_t table_list = {0, 0, NULL};
static table_t *group_table = NULL, *dset_table = NULL, *type_table = NULL;
static hbool_t hit_elink = FALSE; /* whether we have traversed an external link */
static size_t prefix_len = 1024;
-static char *prefix;
+static char *prefix = NULL;
static const char *driver = NULL; /* The driver to open the file with. */
static const h5dump_header_t *dump_header_format;
static const char *fp_format = NULL;
@@ -93,24 +93,20 @@ static int display_ai = TRUE; /*array index */
static int display_escape = FALSE; /*escape non printable characters */
static int display_region = FALSE; /*print region reference data */
static int enable_error_stack= FALSE; /* re-enable error stack */
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
static int display_packed_bits = FALSE; /*print 1-8 byte numbers as packed bits*/
-#endif
/* sort parameters */
static H5_index_t sort_by = H5_INDEX_NAME; /*sort_by [creation_order | name] */
static H5_iter_order_t sort_order = H5_ITER_INC; /*sort_order [ascending | descending] */
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
-#define PACKED_BITS_MAX 8 /* Maximum number of packed-bits to display */
-#define PACKED_BITS_SIZE_MAX 8*sizeof(long long) /* Maximum bits size of integer types of packed-bits */
+#define PACKED_BITS_MAX 8 /* Maximum number of packed-bits to display */
+#define PACKED_BITS_SIZE_MAX 8*sizeof(long long) /* Maximum bits size of integer types of packed-bits */
/* mask list for packed bits */
static unsigned long long packed_mask[PACKED_BITS_MAX]; /* packed bits are restricted to 8*sizeof(llong) bytes */
/* packed bits display parameters */
static int packed_offset[PACKED_BITS_MAX];
static int packed_length[PACKED_BITS_MAX];
-#endif
/**
** Added for XML **
@@ -131,9 +127,7 @@ static int indent; /*how far in to indent the line
/* internal functions */
static hid_t h5_fileaccess(void);
static void dump_oid(hid_t oid);
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
static void dump_packed_bits(unsigned int packed_index, hid_t type);
-#endif
static void print_enum(hid_t type);
static int xml_name_to_XID(const char *, char *, int , int );
static void init_prefix(char **prfx, size_t prfx_len);
@@ -406,12 +400,7 @@ struct handler_t {
*/
/* The following initialization makes use of C language cancatenating */
/* "xxx" "yyy" into "xxxyyy". */
-static const char *s_opts = "hnpeyBHirVa:c:d:f:g:k:l:t:w:xD:uX:o:b*F:s:S:Aq:z:m:RE"
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
-"M:"
-#endif
-; /* end of *s_opt initialization */
-
+static const char *s_opts = "hnpeyBHirVa:c:d:f:g:k:l:t:w:xD:uX:o:b*F:s:S:Aq:z:m:REM:";
static struct long_options l_opts[] = {
{ "help", no_arg, 'h' },
{ "hel", no_arg, 'h' },
@@ -525,9 +514,7 @@ static struct long_options l_opts[] = {
{ "format", require_arg, 'm' },
{ "region", no_arg, 'R' },
{ "enable-error-stack", no_arg, 'E' },
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
{ "packed-bits", require_arg, 'M' },
-#endif
{ NULL, 0, '\0' }
};
@@ -683,16 +670,14 @@ usage(const char *prog)
fprintf(stdout, " -m T, --format=T Set the floating point output format\n");
fprintf(stdout, " -q Q, --sort_by=Q Sort groups and attributes by index Q\n");
fprintf(stdout, " -z Z, --sort_order=Z Sort groups and attributes by order Z\n");
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
fprintf(stdout,
- " -M L, --packedbits=L Print packed bits as unsigned integers, using mask\n"
- " format L for an integer dataset specified with\n"
- " option -d. L is a list of offset,length values,\n"
- " separated by commas. Offset is the beginning bit in\n"
- " the data value and length is the number of bits of\n"
- " the mask.\n"
- );
-#endif
+ " -M L, --packedbits=L Print packed bits as unsigned integers, using mask\n"
+ " format L for an integer dataset specified with\n"
+ " option -d. L is a list of offset,length values,\n"
+ " separated by commas. Offset is the beginning bit in\n"
+ " the data value and length is the number of bits of\n"
+ " the mask.\n"
+ );
fprintf(stdout, " -R, --region Print dataset pointed by region references\n");
fprintf(stdout, " -x, --xml Output in XML using Schema\n");
fprintf(stdout, " -u, --use-dtd Output in XML using DTD\n");
@@ -739,7 +724,7 @@ usage(const char *prog)
fprintf(stdout, "\n");
fprintf(stdout, " 1) Attribute foo of the group /bar_none in file quux.h5\n");
fprintf(stdout, "\n");
- fprintf(stdout, " h5dump -a /bar_none/foo quux.h5\n");
+ fprintf(stdout, " h5dump -a /bar_none/foo quux.h5\n");
fprintf(stdout, "\n");
fprintf(stdout, " 2) Selecting a subset from dataset /foo in file quux.h5\n");
fprintf(stdout, "\n");
@@ -749,12 +734,10 @@ usage(const char *prog)
fprintf(stdout, " using a little-endian type\n");
fprintf(stdout, "\n");
fprintf(stdout, " h5dump -d /dset -b LE -o out.bin quux.h5\n");
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
fprintf(stdout, "\n");
fprintf(stdout, " 4) Display two packed bits (bits 0-1 and bits 4-6) in the dataset /dset\n");
fprintf(stdout, "\n");
fprintf(stdout, " h5dump -d /dset -M 0,1,4,3 quux.h5\n");
-#endif
fprintf(stdout, "\n");
}
@@ -798,7 +781,7 @@ table_list_add(hid_t oid, unsigned long file_no)
return -1;
}
if(init_objs(oid, &info, &table_list.tables[idx].group_table,
- &table_list.tables[idx].dset_table, &table_list.tables[idx].type_table) < 0) {
+ &table_list.tables[idx].dset_table, &table_list.tables[idx].type_table) < 0) {
H5Idec_ref(oid);
table_list.nused--;
return -1;
@@ -918,7 +901,7 @@ print_datatype(hid_t type,unsigned in_group)
if (!in_group && H5Tcommitted(type) > 0) {
H5O_info_t oinfo;
- obj_t *obj; /* Found object */
+ obj_t *obj; /* Found object */
H5Oget_info(type, &oinfo);
obj = search_obj(type_table, oinfo.addr);
@@ -927,152 +910,195 @@ print_datatype(hid_t type,unsigned in_group)
if(!obj->recorded)
HDfprintf(stdout,"\"/#%a\"", obj->objno);
else
- printf("\"%s\"", obj->objname);
- } else {
+ HDfprintf(stdout, "\"%s\"", obj->objname);
+ }
+ else {
error_msg("unknown committed type.\n");
h5tools_setstatus(EXIT_FAILURE);
}
- } else {
+ }
+ else {
switch(H5Tget_class(type)) {
case H5T_INTEGER:
if(H5Tequal(type, H5T_STD_I8BE) == TRUE) {
- printf("H5T_STD_I8BE");
- } else if(H5Tequal(type, H5T_STD_I8LE) == TRUE) {
- printf("H5T_STD_I8LE");
- } else if(H5Tequal(type, H5T_STD_I16BE) == TRUE) {
- printf("H5T_STD_I16BE");
- } else if(H5Tequal(type, H5T_STD_I16LE) == TRUE) {
- printf("H5T_STD_I16LE");
- } else if(H5Tequal(type, H5T_STD_I32BE) == TRUE) {
- printf("H5T_STD_I32BE");
- } else if(H5Tequal(type, H5T_STD_I32LE) == TRUE) {
- printf("H5T_STD_I32LE");
- } else if(H5Tequal(type, H5T_STD_I64BE) == TRUE) {
- printf("H5T_STD_I64BE");
- } else if(H5Tequal(type, H5T_STD_I64LE) == TRUE) {
- printf("H5T_STD_I64LE");
- } else if(H5Tequal(type, H5T_STD_U8BE) == TRUE) {
- printf("H5T_STD_U8BE");
- } else if(H5Tequal(type, H5T_STD_U8LE) == TRUE) {
- printf("H5T_STD_U8LE");
- } else if(H5Tequal(type, H5T_STD_U16BE) == TRUE) {
- printf("H5T_STD_U16BE");
- } else if(H5Tequal(type, H5T_STD_U16LE) == TRUE) {
- printf("H5T_STD_U16LE");
- } else if(H5Tequal(type, H5T_STD_U32BE) == TRUE) {
- printf("H5T_STD_U32BE");
- } else if(H5Tequal(type, H5T_STD_U32LE) == TRUE) {
- printf("H5T_STD_U32LE");
- } else if(H5Tequal(type, H5T_STD_U64BE) == TRUE) {
- printf("H5T_STD_U64BE");
- } else if(H5Tequal(type, H5T_STD_U64LE) == TRUE) {
- printf("H5T_STD_U64LE");
- } else if(H5Tequal(type, H5T_NATIVE_SCHAR) == TRUE) {
- printf("H5T_NATIVE_SCHAR");
- } else if(H5Tequal(type, H5T_NATIVE_UCHAR) == TRUE) {
- printf("H5T_NATIVE_UCHAR");
- } else if(H5Tequal(type, H5T_NATIVE_SHORT) == TRUE) {
- printf("H5T_NATIVE_SHORT");
- } else if(H5Tequal(type, H5T_NATIVE_USHORT) == TRUE) {
- printf("H5T_NATIVE_USHORT");
- } else if(H5Tequal(type, H5T_NATIVE_INT) == TRUE) {
- printf("H5T_NATIVE_INT");
- } else if(H5Tequal(type, H5T_NATIVE_UINT) == TRUE) {
- printf("H5T_NATIVE_UINT");
- } else if(H5Tequal(type, H5T_NATIVE_LONG) == TRUE) {
- printf("H5T_NATIVE_LONG");
- } else if(H5Tequal(type, H5T_NATIVE_ULONG) == TRUE) {
- printf("H5T_NATIVE_ULONG");
- } else if(H5Tequal(type, H5T_NATIVE_LLONG) == TRUE) {
- printf("H5T_NATIVE_LLONG");
- } else if(H5Tequal(type, H5T_NATIVE_ULLONG) == TRUE) {
- printf("H5T_NATIVE_ULLONG");
- } else {
-
- /* byte order */
- if(H5Tget_size(type)>1) {
- order = H5Tget_order(type);
- if (H5T_ORDER_LE == order) {
- order_s = " little-endian";
- } else if (H5T_ORDER_BE == order) {
- order_s = " big-endian";
- } else if (H5T_ORDER_VAX == order) {
- order_s = " mixed-endian";
- } else {
- order_s = " unknown-byte-order";
- }
- } else {
- order_s = "";
- }
-
- /* sign */
- if ((sign=H5Tget_sign(type))>=0)
- {
- if (H5T_SGN_NONE == sign) {
- sign_s = " unsigned";
- } else if (H5T_SGN_2 == sign) {
- sign_s = "";
- } else {
- sign_s = " unknown-sign";
- }
- } else {
- sign_s = " unknown-sign";
- }
-
- /* print size, order, and sign */
- printf("%lu-bit%s%s integer",
- (unsigned long)(8*H5Tget_size(type)), order_s, sign_s);
- }
+ HDfprintf(stdout, "H5T_STD_I8BE");
+ }
+ else if(H5Tequal(type, H5T_STD_I8LE) == TRUE) {
+ HDfprintf(stdout, "H5T_STD_I8LE");
+ }
+ else if(H5Tequal(type, H5T_STD_I16BE) == TRUE) {
+ HDfprintf(stdout, "H5T_STD_I16BE");
+ }
+ else if(H5Tequal(type, H5T_STD_I16LE) == TRUE) {
+ HDfprintf(stdout, "H5T_STD_I16LE");
+ }
+ else if(H5Tequal(type, H5T_STD_I32BE) == TRUE) {
+ HDfprintf(stdout, "H5T_STD_I32BE");
+ }
+ else if(H5Tequal(type, H5T_STD_I32LE) == TRUE) {
+ HDfprintf(stdout, "H5T_STD_I32LE");
+ }
+ else if(H5Tequal(type, H5T_STD_I64BE) == TRUE) {
+ HDfprintf(stdout, "H5T_STD_I64BE");
+ }
+ else if(H5Tequal(type, H5T_STD_I64LE) == TRUE) {
+ HDfprintf(stdout, "H5T_STD_I64LE");
+ }
+ else if(H5Tequal(type, H5T_STD_U8BE) == TRUE) {
+ HDfprintf(stdout, "H5T_STD_U8BE");
+ }
+ else if(H5Tequal(type, H5T_STD_U8LE) == TRUE) {
+ HDfprintf(stdout, "H5T_STD_U8LE");
+ }
+ else if(H5Tequal(type, H5T_STD_U16BE) == TRUE) {
+ HDfprintf(stdout, "H5T_STD_U16BE");
+ }
+ else if(H5Tequal(type, H5T_STD_U16LE) == TRUE) {
+ HDfprintf(stdout, "H5T_STD_U16LE");
+ }
+ else if(H5Tequal(type, H5T_STD_U32BE) == TRUE) {
+ HDfprintf(stdout, "H5T_STD_U32BE");
+ }
+ else if(H5Tequal(type, H5T_STD_U32LE) == TRUE) {
+ HDfprintf(stdout, "H5T_STD_U32LE");
+ }
+ else if(H5Tequal(type, H5T_STD_U64BE) == TRUE) {
+ HDfprintf(stdout, "H5T_STD_U64BE");
+ }
+ else if(H5Tequal(type, H5T_STD_U64LE) == TRUE) {
+ HDfprintf(stdout, "H5T_STD_U64LE");
+ }
+ else if(H5Tequal(type, H5T_NATIVE_SCHAR) == TRUE) {
+ HDfprintf(stdout, "H5T_NATIVE_SCHAR");
+ }
+ else if(H5Tequal(type, H5T_NATIVE_UCHAR) == TRUE) {
+ HDfprintf(stdout, "H5T_NATIVE_UCHAR");
+ }
+ else if(H5Tequal(type, H5T_NATIVE_SHORT) == TRUE) {
+ HDfprintf(stdout, "H5T_NATIVE_SHORT");
+ }
+ else if(H5Tequal(type, H5T_NATIVE_USHORT) == TRUE) {
+ HDfprintf(stdout, "H5T_NATIVE_USHORT");
+ }
+ else if(H5Tequal(type, H5T_NATIVE_INT) == TRUE) {
+ HDfprintf(stdout, "H5T_NATIVE_INT");
+ }
+ else if(H5Tequal(type, H5T_NATIVE_UINT) == TRUE) {
+ HDfprintf(stdout, "H5T_NATIVE_UINT");
+ }
+ else if(H5Tequal(type, H5T_NATIVE_LONG) == TRUE) {
+ HDfprintf(stdout, "H5T_NATIVE_LONG");
+ }
+ else if(H5Tequal(type, H5T_NATIVE_ULONG) == TRUE) {
+ HDfprintf(stdout, "H5T_NATIVE_ULONG");
+ }
+ else if(H5Tequal(type, H5T_NATIVE_LLONG) == TRUE) {
+ HDfprintf(stdout, "H5T_NATIVE_LLONG");
+ }
+ else if(H5Tequal(type, H5T_NATIVE_ULLONG) == TRUE) {
+ HDfprintf(stdout, "H5T_NATIVE_ULLONG");
+ }
+ else {
+
+ /* byte order */
+ if(H5Tget_size(type) > 1) {
+ order = H5Tget_order(type);
+ if (H5T_ORDER_LE == order) {
+ order_s = " little-endian";
+ }
+ else if (H5T_ORDER_BE == order) {
+ order_s = " big-endian";
+ }
+ else if (H5T_ORDER_VAX == order) {
+ order_s = " mixed-endian";
+ }
+ else {
+ order_s = " unknown-byte-order";
+ }
+ }
+ else {
+ order_s = "";
+ } /* end of if(H5Tget_size(type) > 1) */
+
+ /* sign */
+ if ((sign = H5Tget_sign(type)) >= 0) {
+ if (H5T_SGN_NONE == sign) {
+ sign_s = " unsigned";
+ }
+ else if (H5T_SGN_2 == sign) {
+ sign_s = "";
+ }
+ else {
+ sign_s = " unknown-sign";
+ }
+ }
+ else {
+ sign_s = " unknown-sign";
+ } /* end of if ((sign = H5Tget_sign(type)) >= 0) */
+
+ /* print size, order, and sign */
+ HDfprintf(stdout, "%lu-bit%s%s integer", (unsigned long)(8*H5Tget_size(type)), order_s, sign_s);
+ } /* end of if(H5Tequal(...) */
break;
case H5T_FLOAT:
if(H5Tequal(type, H5T_IEEE_F32BE) == TRUE) {
- printf("H5T_IEEE_F32BE");
- } else if(H5Tequal(type, H5T_IEEE_F32LE) == TRUE) {
- printf("H5T_IEEE_F32LE");
- } else if(H5Tequal(type, H5T_IEEE_F64BE) == TRUE) {
- printf("H5T_IEEE_F64BE");
- } else if(H5Tequal(type, H5T_IEEE_F64LE) == TRUE) {
- printf("H5T_IEEE_F64LE");
- } else if(H5Tequal(type, H5T_VAX_F32) == TRUE) {
- printf("H5T_VAX_F32");
- } else if(H5Tequal(type, H5T_VAX_F64) == TRUE) {
- printf("H5T_VAX_F64");
- } else if(H5Tequal(type, H5T_NATIVE_FLOAT) == TRUE) {
- printf("H5T_NATIVE_FLOAT");
- } else if(H5Tequal(type, H5T_NATIVE_DOUBLE) == TRUE) {
- printf("H5T_NATIVE_DOUBLE");
+ HDfprintf(stdout, "H5T_IEEE_F32BE");
+ }
+ else if(H5Tequal(type, H5T_IEEE_F32LE) == TRUE) {
+ HDfprintf(stdout, "H5T_IEEE_F32LE");
+ }
+ else if(H5Tequal(type, H5T_IEEE_F64BE) == TRUE) {
+ HDfprintf(stdout, "H5T_IEEE_F64BE");
+ }
+ else if(H5Tequal(type, H5T_IEEE_F64LE) == TRUE) {
+ HDfprintf(stdout, "H5T_IEEE_F64LE");
+ }
+ else if(H5Tequal(type, H5T_VAX_F32) == TRUE) {
+ HDfprintf(stdout, "H5T_VAX_F32");
+ }
+ else if(H5Tequal(type, H5T_VAX_F64) == TRUE) {
+ HDfprintf(stdout, "H5T_VAX_F64");
+ }
+ else if(H5Tequal(type, H5T_NATIVE_FLOAT) == TRUE) {
+ HDfprintf(stdout, "H5T_NATIVE_FLOAT");
+ }
+ else if(H5Tequal(type, H5T_NATIVE_DOUBLE) == TRUE) {
+ HDfprintf(stdout, "H5T_NATIVE_DOUBLE");
#if H5_SIZEOF_LONG_DOUBLE !=0
- } else if(H5Tequal(type, H5T_NATIVE_LDOUBLE) == TRUE) {
- printf("H5T_NATIVE_LDOUBLE");
+ }
+ else if(H5Tequal(type, H5T_NATIVE_LDOUBLE) == TRUE) {
+ HDfprintf(stdout, "H5T_NATIVE_LDOUBLE");
#endif
- } else {
-
- /* byte order */
- if(H5Tget_size(type)>1) {
- order = H5Tget_order(type);
- if (H5T_ORDER_LE == order) {
- order_s = " little-endian";
- } else if (H5T_ORDER_BE == order) {
- order_s = " big-endian";
- } else if (H5T_ORDER_VAX == order) {
- order_s = " mixed-endian";
- } else {
- order_s = " unknown-byte-order";
- }
- } else {
- order_s = "";
- }
-
- /* print size and byte order */
- printf("%lu-bit%s floating-point",
- (unsigned long)(8*H5Tget_size(type)), order_s);
+ }
+ else {
+ /* byte order */
+ if(H5Tget_size(type) > 1) {
+ order = H5Tget_order(type);
+ if (H5T_ORDER_LE == order) {
+ order_s = " little-endian";
+ }
+ else if (H5T_ORDER_BE == order) {
+ order_s = " big-endian";
+ }
+ else if (H5T_ORDER_VAX == order) {
+ order_s = " mixed-endian";
+ }
+ else {
+ order_s = " unknown-byte-order";
+ }
+ }
+ else {
+ order_s = "";
+ } /* end of if(H5Tget_size(type) > 1) */
- }
+ /* print size and byte order */
+ HDfprintf(stdout, "%lu-bit%s floating-point", (unsigned long)(8*H5Tget_size(type)), order_s);
+ } /* end of if(H5Tequal(...) */
break;
case H5T_TIME:
- printf("H5T_TIME: not yet implemented");
+ HDfprintf(stdout, "H5T_TIME: not yet implemented");
break;
case H5T_STRING:
@@ -1085,33 +1111,33 @@ print_datatype(hid_t type,unsigned in_group)
cset = H5Tget_cset(tmp_type);
is_vlstr = H5Tis_variable_str(tmp_type);
- printf("H5T_STRING %s\n", dump_header_format->strblockbegin);
+ HDfprintf(stdout, "H5T_STRING %s\n", dump_header_format->strblockbegin);
indent += COL;
indentation(indent + COL);
if(is_vlstr)
- printf("%s H5T_VARIABLE;\n", STRSIZE);
+ HDfprintf(stdout, "%s H5T_VARIABLE;\n", STRSIZE);
else
- printf("%s %d;\n", STRSIZE, (int) size);
+ HDfprintf(stdout, "%s %d;\n", STRSIZE, (int) size);
indentation(indent + COL);
- printf("%s ", STRPAD);
+ HDfprintf(stdout, "%s ", STRPAD);
if (str_pad == H5T_STR_NULLTERM)
- printf("H5T_STR_NULLTERM;\n");
+ HDfprintf(stdout, "H5T_STR_NULLTERM;\n");
else if (str_pad == H5T_STR_NULLPAD)
- printf("H5T_STR_NULLPAD;\n");
+ HDfprintf(stdout, "H5T_STR_NULLPAD;\n");
else if (str_pad == H5T_STR_SPACEPAD)
- printf("H5T_STR_SPACEPAD;\n");
+ HDfprintf(stdout, "H5T_STR_SPACEPAD;\n");
else
- printf("H5T_STR_ERROR;\n");
+ HDfprintf(stdout, "H5T_STR_ERROR;\n");
indentation(indent + COL);
- printf("%s ", CSET);
+ HDfprintf(stdout, "%s ", CSET);
if (cset == H5T_CSET_ASCII)
- printf("H5T_CSET_ASCII;\n");
+ HDfprintf(stdout, "H5T_CSET_ASCII;\n");
else
- printf("unknown_cset;\n");
+ HDfprintf(stdout, "unknown_cset;\n");
str_type = H5Tcopy(H5T_C_S1);
if(is_vlstr)
@@ -1122,23 +1148,23 @@ print_datatype(hid_t type,unsigned in_group)
H5Tset_strpad(str_type, str_pad);
indentation(indent + COL);
- printf("%s ", CTYPE);
+ HDfprintf(stdout, "%s ", CTYPE);
/* Check C variable-length string first. Are the two types equal? */
if (H5Tequal(tmp_type, str_type)) {
- printf("H5T_C_S1;\n");
+ HDfprintf(stdout, "H5T_C_S1;\n");
goto done;
}
/* Change the endianness and see if they're equal. */
order = H5Tget_order(tmp_type);
- if(order==H5T_ORDER_LE)
+ if(order == H5T_ORDER_LE)
H5Tset_order(str_type, H5T_ORDER_LE);
- else if(order==H5T_ORDER_BE)
+ else if(order == H5T_ORDER_BE)
H5Tset_order(str_type, H5T_ORDER_BE);
if (H5Tequal(tmp_type, str_type)) {
- printf("H5T_C_S1;\n");
+ HDfprintf(stdout, "H5T_C_S1;\n");
goto done;
}
@@ -1151,24 +1177,24 @@ print_datatype(hid_t type,unsigned in_group)
/* Are the two types equal? */
if (H5Tequal(tmp_type, str_type)) {
- printf("H5T_FORTRAN_S1;\n");
+ HDfprintf(stdout, "H5T_FORTRAN_S1;\n");
goto done;
}
/* Change the endianness and see if they're equal. */
order = H5Tget_order(tmp_type);
- if(order==H5T_ORDER_LE)
+ if(order == H5T_ORDER_LE)
H5Tset_order(str_type, H5T_ORDER_LE);
- else if(order==H5T_ORDER_BE)
+ else if(order == H5T_ORDER_BE)
H5Tset_order(str_type, H5T_ORDER_BE);
if (H5Tequal(tmp_type, str_type)) {
- printf("H5T_FORTRAN_S1;\n");
+ HDfprintf(stdout, "H5T_FORTRAN_S1;\n");
goto done;
}
/* Type doesn't match any of above. */
- printf("unknown_one_character_type;\n ");
+ HDfprintf(stdout, "unknown_one_character_type;\n ");
h5tools_setstatus(EXIT_FAILURE);
done:
@@ -1177,46 +1203,54 @@ print_datatype(hid_t type,unsigned in_group)
indent -= COL;
indentation(indent + COL);
- printf("%s", dump_header_format->strblockend);
+ HDfprintf(stdout, "%s", dump_header_format->strblockend);
break;
case H5T_BITFIELD:
if (H5Tequal(type, H5T_STD_B8BE)==TRUE) {
- printf("H5T_STD_B8BE");
- } else if (H5Tequal(type, H5T_STD_B8LE)==TRUE) {
- printf("H5T_STD_B8LE");
- } else if (H5Tequal(type, H5T_STD_B16BE)==TRUE) {
- printf("H5T_STD_B16BE");
- } else if (H5Tequal(type, H5T_STD_B16LE)==TRUE) {
- printf("H5T_STD_B16LE");
- } else if (H5Tequal(type, H5T_STD_B32BE)==TRUE) {
- printf("H5T_STD_B32BE");
- } else if (H5Tequal(type, H5T_STD_B32LE)==TRUE) {
- printf("H5T_STD_B32LE");
- } else if (H5Tequal(type, H5T_STD_B64BE)==TRUE) {
- printf("H5T_STD_B64BE");
- } else if (H5Tequal(type, H5T_STD_B64LE)==TRUE) {
- printf("H5T_STD_B64LE");
- } else {
- printf("undefined bitfield");
+ HDfprintf(stdout, "H5T_STD_B8BE");
+ }
+ else if (H5Tequal(type, H5T_STD_B8LE)==TRUE) {
+ HDfprintf(stdout, "H5T_STD_B8LE");
+ }
+ else if (H5Tequal(type, H5T_STD_B16BE)==TRUE) {
+ HDfprintf(stdout, "H5T_STD_B16BE");
+ }
+ else if (H5Tequal(type, H5T_STD_B16LE)==TRUE) {
+ HDfprintf(stdout, "H5T_STD_B16LE");
+ }
+ else if (H5Tequal(type, H5T_STD_B32BE)==TRUE) {
+ HDfprintf(stdout, "H5T_STD_B32BE");
+ }
+ else if (H5Tequal(type, H5T_STD_B32LE)==TRUE) {
+ HDfprintf(stdout, "H5T_STD_B32LE");
+ }
+ else if (H5Tequal(type, H5T_STD_B64BE)==TRUE) {
+ HDfprintf(stdout, "H5T_STD_B64BE");
+ }
+ else if (H5Tequal(type, H5T_STD_B64LE)==TRUE) {
+ HDfprintf(stdout, "H5T_STD_B64LE");
+ }
+ else {
+ HDfprintf(stdout, "undefined bitfield");
h5tools_setstatus(EXIT_FAILURE);
- }
+ } /* end of if(H5Tequal(...) */
break;
case H5T_OPAQUE:
- printf("\n");
+ HDfprintf(stdout, "\n");
indentation(indent + COL);
- printf("H5T_OPAQUE;\n");
+ HDfprintf(stdout, "H5T_OPAQUE;\n");
indentation(indent + COL);
mname = H5Tget_tag(type);
- printf("OPAQUE_TAG \"%s\";\n", mname);
+ HDfprintf(stdout, "OPAQUE_TAG \"%s\";\n", mname);
free(mname);
indentation(indent);
break;
case H5T_COMPOUND:
nmembers = H5Tget_nmembers(type);
- printf("H5T_COMPOUND %s\n", dump_header_format->structblockbegin);
+ HDfprintf(stdout, "H5T_COMPOUND %s\n", dump_header_format->structblockbegin);
for (i = 0; i < nmembers; i++) {
mname = H5Tget_member_name(type, i);
@@ -1231,47 +1265,47 @@ print_datatype(hid_t type,unsigned in_group)
if (H5Tget_class(mtype) == H5T_COMPOUND)
indent -= COL;
- printf(" \"%s\";\n", mname);
+ HDfprintf(stdout, " \"%s\";\n", mname);
free(mname);
- }
+ } /* end of for (i = 0; i < nmembers; i++) */
indentation(indent);
- printf("%s", dump_header_format->structblockend);
+ HDfprintf(stdout, "%s", dump_header_format->structblockend);
break;
case H5T_REFERENCE:
- printf("H5T_REFERENCE");
+ HDfprintf(stdout, "H5T_REFERENCE");
/* The BNF document states that the type of reference should be
* displayed after "H5T_REFERENCE". */
if (H5Tequal(type, H5T_STD_REF_DSETREG)==TRUE) {
- printf(" { H5T_STD_REF_DSETREG }");
+ HDfprintf(stdout, " { H5T_STD_REF_DSETREG }");
}
else {
- printf(" { H5T_STD_REF_OBJECT }");
+ HDfprintf(stdout, " { H5T_STD_REF_OBJECT }");
}
break;
case H5T_ENUM:
- printf("H5T_ENUM %s\n", dump_header_format->enumblockbegin);
+ HDfprintf(stdout, "H5T_ENUM %s\n", dump_header_format->enumblockbegin);
indent += COL;
indentation(indent + COL);
super = H5Tget_super(type);
print_datatype(super,0);
- printf(";\n");
+ HDfprintf(stdout, ";\n");
print_enum(type);
indent -= COL;
indentation(indent + COL);
- printf("%s", dump_header_format->enumblockend);
+ HDfprintf(stdout, "%s", dump_header_format->enumblockend);
break;
case H5T_VLEN:
- printf("H5T_VLEN %s ", dump_header_format->vlenblockbegin);
+ HDfprintf(stdout, "H5T_VLEN %s ", dump_header_format->vlenblockbegin);
super = H5Tget_super(type);
print_datatype(super,0);
H5Tclose(super);
/* Print closing */
- printf("%s", dump_header_format->vlenblockend);
+ HDfprintf(stdout, "%s", dump_header_format->vlenblockend);
break;
case H5T_ARRAY:
@@ -1279,7 +1313,7 @@ print_datatype(hid_t type,unsigned in_group)
super = H5Tget_super(type);
/* Print lead-in */
- printf("H5T_ARRAY { ");
+ HDfprintf(stdout, "H5T_ARRAY { ");
/* Get array information */
ndims = H5Tget_array_ndims(type);
@@ -1287,9 +1321,9 @@ print_datatype(hid_t type,unsigned in_group)
/* Print array dimensions */
for (i = 0; i < ndims; i++)
- printf("[%d]", (int) dims[i]);
+ HDfprintf(stdout, "[%d]", (int) dims[i]);
- printf(" ");
+ HDfprintf(stdout, " ");
/* Print base type */
print_datatype(super,0);
@@ -1298,12 +1332,12 @@ print_datatype(hid_t type,unsigned in_group)
H5Tclose(super);
/* Print closing */
- printf(" }");
+ HDfprintf(stdout, " }");
break;
default:
- printf("unknown datatype");
+ HDfprintf(stdout, "unknown datatype");
h5tools_setstatus(EXIT_FAILURE);
break;
}
@@ -1331,13 +1365,11 @@ dump_datatype(hid_t type)
indent += COL;
indentation(indent);
- printf("%s %s ", dump_header_format->datatypebegin,
- dump_header_format->datatypeblockbegin);
+ HDfprintf(stdout, "%s %s ", dump_header_format->datatypebegin, dump_header_format->datatypeblockbegin);
print_datatype(type,0);
- end_obj(dump_header_format->datatypeend,
- dump_header_format->datatypeblockend);
+ end_obj(dump_header_format->datatypeend, dump_header_format->datatypeblockend);
indent -= COL;
}
@@ -1358,40 +1390,37 @@ dump_datatype(hid_t type)
static void
dump_dataspace(hid_t space)
{
- hsize_t size[H5DUMP_MAX_RANK];
- hsize_t maxsize[H5DUMP_MAX_RANK];
- int ndims = H5Sget_simple_extent_dims(space, size, maxsize);
+ hsize_t size[H5DUMP_MAX_RANK];
+ hsize_t maxsize[H5DUMP_MAX_RANK];
+ int i;
+
+ int ndims = H5Sget_simple_extent_dims(space, size, maxsize);
H5S_class_t space_type = H5Sget_simple_extent_type(space);
- int i;
indentation(indent + COL);
- printf("%s ", dump_header_format->dataspacebegin);
+ HDfprintf(stdout, "%s ", dump_header_format->dataspacebegin);
switch(space_type) {
case H5S_SCALAR:
/* scalar dataspace */
- HDfprintf(stdout, "%s %s",
- dump_header_format->dataspacedescriptionbegin, S_SCALAR);
+ HDfprintf(stdout, "%s %s", dump_header_format->dataspacedescriptionbegin, S_SCALAR);
break;
case H5S_SIMPLE:
/* simple dataspace */
- HDfprintf(stdout, "%s %s { %s %Hu",
- dump_header_format->dataspacedescriptionbegin, S_SIMPLE,
- dump_header_format->dataspacedimbegin, size[0]);
+ HDfprintf(stdout, "%s %s { %s %Hu",
+ dump_header_format->dataspacedescriptionbegin, S_SIMPLE,
+ dump_header_format->dataspacedimbegin, size[0]);
for(i = 1; i < ndims; i++)
HDfprintf(stdout, ", %Hu", size[i]);
- printf(" %s / ", dump_header_format->dataspacedimend);
+ HDfprintf(stdout, " %s / ", dump_header_format->dataspacedimend);
if(maxsize[0] == H5S_UNLIMITED)
- HDfprintf(stdout, "%s %s",
- dump_header_format->dataspacedimbegin,
- "H5S_UNLIMITED");
+ HDfprintf(stdout, "%s %s", dump_header_format->dataspacedimbegin, "H5S_UNLIMITED");
else
- HDfprintf(stdout, "%s %Hu",
- dump_header_format->dataspacedimbegin, maxsize[0]);
+ HDfprintf(stdout, "%s %Hu", dump_header_format->dataspacedimbegin, maxsize[0]);
for(i = 1; i < ndims; i++)
if(maxsize[i] == H5S_UNLIMITED)
@@ -1399,23 +1428,21 @@ dump_dataspace(hid_t space)
else
HDfprintf(stdout, ", %Hu", maxsize[i]);
- printf(" %s }", dump_header_format->dataspacedimend);
+ HDfprintf(stdout, " %s }", dump_header_format->dataspacedimend);
break;
case H5S_NULL:
/* null dataspace */
- HDfprintf(stdout, "%s %s",
- dump_header_format->dataspacedescriptionbegin, S_NULL);
+ HDfprintf(stdout, "%s %s", dump_header_format->dataspacedescriptionbegin, S_NULL);
break;
case H5S_NO_CLASS:
default:
- printf("%s unknown dataspace %s\n", BEGIN, END);
+ HDfprintf(stdout, "%s unknown dataspace %s\n", BEGIN, END);
break;
} /* end switch */
- end_obj(dump_header_format->dataspaceend,
- dump_header_format->dataspaceblockend);
+ end_obj(dump_header_format->dataspaceend, dump_header_format->dataspaceblockend);
}
@@ -1442,18 +1469,17 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t UNUSED *info, vo
herr_t ret = SUCCEED;
indentation(indent);
- begin_obj(dump_header_format->attributebegin, attr_name,
- dump_header_format->attributeblockbegin);
+ begin_obj(dump_header_format->attributebegin, attr_name, dump_header_format->attributeblockbegin);
if((attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT)) < 0) {
indentation(indent + COL);
error_msg("unable to open attribute \"%s\"\n", attr_name);
indentation(indent);
- end_obj(dump_header_format->attributeend,
- dump_header_format->attributeblockend);
+ end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend);
h5tools_setstatus(EXIT_FAILURE);
ret = FAIL;
- } else {
+ }
+ else {
hid_t type, space;
type = H5Aget_type(attr_id);
@@ -1553,7 +1579,8 @@ dump_selected_attr(hid_t loc_id, const char *name)
H5Aclose(attr_id);
end_obj(dump_header_format->attributeend,
dump_header_format->attributeblockend);
- } else {
+ }
+ else {
indentation(COL);
error_msg("unable to open attribute \"%s\"\n", obj_name);
end_obj(dump_header_format->attributeend, dump_header_format->attributeblockend);
@@ -1605,8 +1632,8 @@ static herr_t
dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED *op_data)
{
hid_t obj;
- char *obj_path = NULL; /* Full path of object */
herr_t ret = SUCCEED;
+ char *obj_path = NULL; /* Full path of object */
/* Build the object's path name */
obj_path = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
@@ -1648,7 +1675,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED
add_prefix(&prefix, &prefix_len, name);
/* Iterate into group */
- dump_function_table->dump_group_function(obj, name);
+ dump_function_table->dump_group_function(obj, name);
/* Restore old prefix name */
HDstrcpy(prefix, old_prefix);
@@ -1668,14 +1695,11 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED
if(found_obj == NULL) {
indentation(indent);
- begin_obj(dump_header_format->datasetbegin, name,
- dump_header_format->datasetblockbegin);
+ begin_obj(dump_header_format->datasetbegin, name, dump_header_format->datasetblockbegin);
indentation(indent + COL);
- error_msg("internal error (file %s:line %d)\n",
- __FILE__, __LINE__);
+ error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
indentation(indent);
- end_obj(dump_header_format->datasetend,
- dump_header_format->datasetblockend);
+ end_obj(dump_header_format->datasetend, dump_header_format->datasetblockend);
h5tools_setstatus(EXIT_FAILURE);
ret = FAIL;
H5Dclose(obj);
@@ -1685,13 +1709,11 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED
indentation(indent);
if(!doxml) {
- begin_obj(dump_header_format->datasetbegin, name,
- dump_header_format->datasetblockbegin);
+ begin_obj(dump_header_format->datasetbegin, name, dump_header_format->datasetblockbegin);
indentation(indent + COL);
- printf("%s \"%s\"\n", HARDLINK, found_obj->objname);
+ HDfprintf(stdout, "%s \"%s\"\n", HARDLINK, found_obj->objname);
indentation(indent);
- end_obj(dump_header_format->datasetend,
- dump_header_format->datasetblockend);
+ end_obj(dump_header_format->datasetend, dump_header_format->datasetblockend);
}
else {
/* the XML version */
@@ -1699,15 +1721,15 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED
char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/");
char *t_name = xml_escape_the_name(name);
char *t_objname = xml_escape_the_name(found_obj->objname);
- char dsetxid[100];
- char parentxid[100];
- char pointerxid[100];
+ char dsetxid[100];
+ char parentxid[100];
+ char pointerxid[100];
/* Create OBJ-XIDs for the parent and object */
xml_name_to_XID(obj_path, dsetxid, sizeof(dsetxid), 1);
xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
- printf("<%sDataset Name=\"%s\" OBJ-XID=\"%s-%d\" "
+ HDfprintf(stdout, "<%sDataset Name=\"%s\" OBJ-XID=\"%s-%d\" "
"H5Path=\"%s\" Parents=\"%s\" "
"H5ParentPaths=\"%s\">\n",
xmlnsprefix,
@@ -1719,11 +1741,11 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED
indentation(indent + COL);
xml_name_to_XID(found_obj->objname, pointerxid, sizeof(pointerxid), 1);
- printf("<%sDatasetPtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n",
+ HDfprintf(stdout, "<%sDatasetPtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n",
xmlnsprefix,
pointerxid,t_objname);
indentation(indent);
- printf("</%sDataset>\n", xmlnsprefix);
+ HDfprintf(stdout, "</%sDataset>\n", xmlnsprefix);
HDfree(t_name);
HDfree(t_obj_path);
@@ -1777,8 +1799,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED
HDassert(targbuf);
if(!doxml) {
- begin_obj(dump_header_format->softlinkbegin, name,
- dump_header_format->softlinkblockbegin);
+ begin_obj(dump_header_format->softlinkbegin, name, dump_header_format->softlinkblockbegin);
indentation(indent + COL);
}
@@ -1791,7 +1812,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED
/* print the value of a soft link */
if (!doxml) {
/* Standard DDL: no modification */
- printf("LINKTARGET \"%s\"\n", targbuf);
+ HDfprintf(stdout, "LINKTARGET \"%s\"\n", targbuf);
}
else {
/* XML */
@@ -1803,7 +1824,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED
char *t_targbuf = xml_escape_the_name(targbuf);
char *t_obj_path = xml_escape_the_name(obj_path);
char *t_link_path;
- int res;
+ int res;
t_link_path = (char *)HDmalloc(HDstrlen(prefix) + linfo->u.val_size + 1);
if(targbuf[0] == '/')
@@ -1821,7 +1842,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED
res = xml_name_to_XID(t_link_path, targetxid, sizeof(targetxid), 0);
if (res == 0) {
/* target obj found */
- printf("<%sSoftLink LinkName=\"%s\" "
+ HDfprintf(stdout, "<%sSoftLink LinkName=\"%s\" "
"OBJ-XID=\"%s\" "
"H5SourcePath=\"%s\" "
"TargetPath=\"%s\" TargetObj=\"%s\" "
@@ -1837,7 +1858,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED
}
else {
/* dangling link -- omit from xml attributes */
- printf("<%sSoftLink LinkName=\"%s\" "
+ HDfprintf(stdout, "<%sSoftLink LinkName=\"%s\" "
"OBJ-XID=\"%s\" "
"H5SourcePath=\"%s\" "
"TargetPath=\"%s\" "
@@ -1861,8 +1882,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED
if (!doxml) {
indentation(indent);
- end_obj(dump_header_format->softlinkend,
- dump_header_format->softlinkblockend);
+ end_obj(dump_header_format->softlinkend, dump_header_format->softlinkblockend);
}
HDfree(targbuf);
@@ -1893,14 +1913,12 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED
else {
if(!doxml) {
indentation(indent + COL);
- printf("TARGETFILE \"%s\"\n", filename);
+ HDfprintf(stdout, "TARGETFILE \"%s\"\n", filename);
indentation(indent + COL);
- printf("TARGETPATH \"%s\"\n", targname);
+ HDfprintf(stdout, "TARGETPATH \"%s\"\n", targname);
/* dump the external link */
dump_extlink(group, name, targname);
-
-
} /* end if */
/* XML */
else {
@@ -1916,20 +1934,20 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED
xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1);
xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
- printf("<%sExternalLink LinkName=\"%s\" "
- "OBJ-XID=\"%s\" "
- "H5SourcePath=\"%s\" "
- "TargetFilename=\"%s\" "
- "TargetPath=\"%s\" "
- "Parents=\"%s\" H5ParentPaths=\"%s\" />\n",
- xmlnsprefix,
- t_name, /* LinkName */
- linkxid, /* OBJ-XID */
- t_obj_path, /* H5SourcePath */
- filename, /* TargetFilename */
- targname, /* TargetPath*/
- parentxid, /* Parents */
- t_prefix); /* H5ParentPaths */
+ HDfprintf(stdout, "<%sExternalLink LinkName=\"%s\" "
+ "OBJ-XID=\"%s\" "
+ "H5SourcePath=\"%s\" "
+ "TargetFilename=\"%s\" "
+ "TargetPath=\"%s\" "
+ "Parents=\"%s\" H5ParentPaths=\"%s\" />\n",
+ xmlnsprefix,
+ t_name, /* LinkName */
+ linkxid, /* OBJ-XID */
+ t_obj_path, /* H5SourcePath */
+ filename, /* TargetFilename */
+ targname, /* TargetPath*/
+ parentxid, /* Parents */
+ t_prefix); /* H5ParentPaths */
HDfree(t_prefix);
HDfree(t_name);
HDfree(t_filename);
@@ -1950,7 +1968,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED
if(!doxml) {
begin_obj(dump_header_format->udlinkbegin, name, dump_header_format->udlinkblockbegin);
indentation(indent + COL);
- printf("LINKCLASS %d\n", linfo->type);
+ HDfprintf(stdout, "LINKCLASS %d\n", linfo->type);
indentation(indent);
end_obj(dump_header_format->udlinkend, dump_header_format->udlinkblockend);
} /* end if */
@@ -1966,18 +1984,18 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED
xml_name_to_XID(t_obj_path, linkxid, sizeof(linkxid), 1);
xml_name_to_XID(prefix, parentxid, sizeof(parentxid), 1);
- printf("<%sUserDefined LinkName=\"%s\" "
+ HDfprintf(stdout, "<%sUserDefined LinkName=\"%s\" "
"OBJ-XID=\"%s\" "
"H5SourcePath=\"%s\" "
"LinkClass=\"%d\" "
"Parents=\"%s\" H5ParentPaths=\"%s\" />\n",
- xmlnsprefix,
- t_name, /* LinkName */
- linkxid, /* OBJ-XID */
- t_obj_path, /* H5SourcePath */
- linfo->type, /* LinkClass */
- parentxid, /* Parents */
- t_prefix); /* H5ParentPaths */
+ xmlnsprefix,
+ t_name, /* LinkName */
+ linkxid, /* OBJ-XID */
+ t_obj_path, /* H5SourcePath */
+ linfo->type, /* LinkClass */
+ parentxid, /* Parents */
+ t_prefix); /* H5ParentPaths */
HDfree(t_prefix);
HDfree(t_name);
HDfree(t_obj_path);
@@ -2013,19 +2031,17 @@ static void
dump_named_datatype(hid_t tid, const char *name)
{
H5O_info_t oinfo;
- unsigned attr_crt_order_flags;
- hid_t tcpl_id; /* datatype creation property list ID */
+ unsigned attr_crt_order_flags;
+ hid_t tcpl_id; /* datatype creation property list ID */
- if ((tcpl_id = H5Tget_create_plist(tid)) < 0)
- {
+ if ((tcpl_id = H5Tget_create_plist(tid)) < 0) {
error_msg("error in getting creation property list ID\n");
h5tools_setstatus(EXIT_FAILURE);
}
/* query the creation properties for attributes */
- if (H5Pget_attr_creation_order(tcpl_id, &attr_crt_order_flags) < 0)
- {
+ if (H5Pget_attr_creation_order(tcpl_id, &attr_crt_order_flags) < 0) {
error_msg("error in getting creation properties\n");
h5tools_setstatus(EXIT_FAILURE);
}
@@ -2037,7 +2053,7 @@ dump_named_datatype(hid_t tid, const char *name)
indentation(indent);
- printf("%s \"%s\" %s", dump_header_format->datatypebegin, name,
+ HDfprintf(stdout, "%s \"%s\" %s", dump_header_format->datatypebegin, name,
dump_header_format->datatypeblockbegin);
H5Oget_info(tid, &oinfo);
@@ -2051,13 +2067,12 @@ dump_named_datatype(hid_t tid, const char *name)
found_obj = search_obj(type_table, oinfo.addr);
if (found_obj == NULL) {
- error_msg("internal error (file %s:line %d)\n",
- __FILE__, __LINE__);
+ error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
else if (found_obj->displayed) {
- printf("%s \"%s\"\n", HARDLINK, found_obj->objname);
+ HDfprintf(stdout, "%s \"%s\"\n", HARDLINK, found_obj->objname);
goto done;
}
else
@@ -2066,7 +2081,7 @@ dump_named_datatype(hid_t tid, const char *name)
print_datatype(tid, 1);
if(H5Tget_class(tid) != H5T_COMPOUND)
- printf(";\n");
+ HDfprintf(stdout, ";\n");
/* print attributes */
indent += COL;
@@ -2074,7 +2089,7 @@ dump_named_datatype(hid_t tid, const char *name)
/* attribute iteration: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
in the datatype's create property list for attributes, then, sort by creation order, otherwise by name */
- if( (sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
+ if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
if(H5Aiterate2(tid, sort_by, sort_order, NULL, dump_attr_cb, NULL) < 0) {
error_msg("error getting attribute information\n");
h5tools_setstatus(EXIT_FAILURE);
@@ -2090,8 +2105,7 @@ dump_named_datatype(hid_t tid, const char *name)
indent -= COL;
done:
- end_obj(dump_header_format->datatypeend,
- dump_header_format->datatypeblockend);
+ end_obj(dump_header_format->datatypeend, dump_header_format->datatypeblockend);
}
/*-------------------------------------------------------------------------
@@ -2116,29 +2130,27 @@ static void
dump_group(hid_t gid, const char *name)
{
H5O_info_t oinfo;
- hid_t dset, type;
- char type_name[1024], *tmp;
+ hid_t dset;
+ hid_t type;
+ hid_t gcpl_id;
unsigned crt_order_flags;
unsigned attr_crt_order_flags;
- hid_t gcpl_id;
-
+ char type_name[1024];
+ char *tmp = NULL;
- if ((gcpl_id = H5Gget_create_plist(gid)) < 0)
- {
+ if ((gcpl_id = H5Gget_create_plist(gid)) < 0) {
error_msg("error in getting group creation property list ID\n");
h5tools_setstatus(EXIT_FAILURE);
}
/* query the group creation properties for attributes */
- if (H5Pget_attr_creation_order(gcpl_id, &attr_crt_order_flags) < 0)
- {
+ if (H5Pget_attr_creation_order(gcpl_id, &attr_crt_order_flags) < 0) {
error_msg("error in getting group creation properties\n");
h5tools_setstatus(EXIT_FAILURE);
}
/* query the group creation properties */
- if(H5Pget_link_creation_order(gcpl_id, &crt_order_flags) < 0)
- {
+ if(H5Pget_link_creation_order(gcpl_id, &crt_order_flags) < 0) {
error_msg("error in getting group creation properties\n");
h5tools_setstatus(EXIT_FAILURE);
}
@@ -2148,7 +2160,6 @@ dump_group(hid_t gid, const char *name)
h5tools_setstatus(EXIT_FAILURE);
}
-
tmp = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
HDstrcpy(tmp, prefix);
indentation(indent);
@@ -2161,7 +2172,7 @@ dump_group(hid_t gid, const char *name)
dump_comment(gid);
if(!HDstrcmp(name, "/") && unamedtype) {
- unsigned u; /* Local index variable */
+ unsigned u; /* Local index variable */
/* dump unamed type in root group */
for(u = 0; u < type_table->nobjs; u++)
@@ -2192,7 +2203,7 @@ dump_group(hid_t gid, const char *name)
}
else if (found_obj->displayed) {
indentation(indent);
- printf("%s \"%s\"\n", HARDLINK, found_obj->objname);
+ HDfprintf(stdout, "%s \"%s\"\n", HARDLINK, found_obj->objname);
}
else {
found_obj->displayed = TRUE;
@@ -2219,14 +2230,10 @@ dump_group(hid_t gid, const char *name)
H5Literate(gid, sort_by, sort_order, NULL, dump_all_cb, NULL);
else
H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, dump_all_cb, NULL);
-
}
}
-
- else
- {
-
+ else {
/* attribute iteration: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
in the group for attributes, then, sort by creation order, otherwise by name */
@@ -2250,8 +2257,6 @@ dump_group(hid_t gid, const char *name)
H5Literate(gid, sort_by, sort_order, NULL, dump_all_cb, NULL);
else
H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, dump_all_cb, NULL);
-
-
}
indent -= COL;
@@ -2283,22 +2288,19 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
unsigned attr_crt_order_flags;
hid_t dcpl_id; /* dataset creation property list ID */
- if ((dcpl_id = H5Dget_create_plist(did)) < 0)
- {
+ if ((dcpl_id = H5Dget_create_plist(did)) < 0) {
error_msg("error in getting creation property list ID\n");
h5tools_setstatus(EXIT_FAILURE);
}
/* query the creation properties for attributes */
- if (H5Pget_attr_creation_order(dcpl_id, &attr_crt_order_flags) < 0)
- {
+ if (H5Pget_attr_creation_order(dcpl_id, &attr_crt_order_flags) < 0) {
error_msg("error in getting creation properties\n");
h5tools_setstatus(EXIT_FAILURE);
}
indentation(indent);
- begin_obj(dump_header_format->datasetbegin, name,
- dump_header_format->datasetblockbegin);
+ begin_obj(dump_header_format->datasetbegin, name, dump_header_format->datasetblockbegin);
type = H5Dget_type(did);
space = H5Dget_space(did);
@@ -2314,22 +2316,20 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
dump_dcpl(dcpl_id, type, did);
if(display_data) {
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
- int data_loop = 1;
- int i;
+ int data_loop = 1;
+ int i;
if(display_packed_bits)
data_loop = packed_bits_num;
- for(i=0;i<data_loop;i++) {
+ for(i=0; i<data_loop; i++) {
if(display_packed_bits) {
dump_packed_bits(i, type);
packed_data_mask = packed_mask[i];
packed_data_offset = packed_offset[i];
}
-#endif
- switch(H5Tget_class(type)) {
+ switch(H5Tget_class(type)) {
case H5T_TIME:
indentation(indent + COL);
- printf("DATA{ not yet implemented.}\n");
+ HDfprintf(stdout, "DATA{ not yet implemented.}\n");
break;
case H5T_INTEGER:
@@ -2347,21 +2347,17 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
default:
break;
- } /* end switch */
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
+ } /* end switch */
} /* for(i=0;i<data_loop;i++) */
-#endif
}
indent += COL;
- if ( !bin_output )
- {
-
+ if (!bin_output) {
/* attribute iteration: if there is a request to do H5_INDEX_CRT_ORDER and tracking order is set
in the group for attributes, then, sort by creation order, otherwise by name */
- if( (sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
+ if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
if(H5Aiterate2(did, sort_by, sort_order, NULL, dump_attr_cb, NULL) < 0) {
error_msg("error getting attribute information\n");
h5tools_setstatus(EXIT_FAILURE);
@@ -2382,7 +2378,6 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
H5Sclose(space);
H5Pclose(dcpl_id);
-
indentation(indent);
end_obj(dump_header_format->datasetend,dump_header_format->datasetblockend);
}
@@ -2409,8 +2404,7 @@ dump_dims(hsize_t *s, int dims)
for (i = 0; i < dims; i++) {
printf(HSIZE_T_FORMAT, s[i]);
- if (i + 1 != dims)
- printf(", ");
+ if (i + 1 != dims) HDfprintf(stdout, ", ");
}
}
@@ -2432,47 +2426,38 @@ static void
dump_subsetting_header(struct subset_t *sset, int dims)
{
indentation(indent);
- printf("%s %s\n", dump_header_format->subsettingbegin,
- dump_header_format->subsettingblockbegin);
+ HDfprintf(stdout, "%s %s\n", dump_header_format->subsettingbegin, dump_header_format->subsettingblockbegin);
indent += COL;
indentation(indent);
- printf("%s %s ", dump_header_format->startbegin,
- dump_header_format->startblockbegin);
+ HDfprintf(stdout, "%s %s ", dump_header_format->startbegin, dump_header_format->startblockbegin);
dump_dims(sset->start.data, dims);
- printf("%s %s\n", dump_header_format->startend,
- dump_header_format->startblockend);
+ HDfprintf(stdout, "%s %s\n", dump_header_format->startend, dump_header_format->startblockend);
indentation(indent);
- printf("%s %s ", dump_header_format->stridebegin,
- dump_header_format->strideblockbegin);
+ HDfprintf(stdout, "%s %s ", dump_header_format->stridebegin, dump_header_format->strideblockbegin);
dump_dims(sset->stride.data, dims);
- printf("%s %s\n", dump_header_format->strideend,
- dump_header_format->strideblockend);
+ HDfprintf(stdout, "%s %s\n", dump_header_format->strideend, dump_header_format->strideblockend);
indentation(indent);
- printf("%s %s ", dump_header_format->countbegin,
- dump_header_format->countblockbegin);
+ HDfprintf(stdout, "%s %s ", dump_header_format->countbegin, dump_header_format->countblockbegin);
if(sset->count.data)
dump_dims(sset->count.data, dims);
else
- printf("DEFAULT");
+ HDfprintf(stdout, "DEFAULT");
- printf("%s %s\n", dump_header_format->countend,
- dump_header_format->countblockend);
+ HDfprintf(stdout, "%s %s\n", dump_header_format->countend, dump_header_format->countblockend);
indentation(indent);
- printf("%s %s ", dump_header_format->blockbegin,
- dump_header_format->blockblockbegin);
+ HDfprintf(stdout, "%s %s ", dump_header_format->blockbegin, dump_header_format->blockblockbegin);
if(sset->block.data)
dump_dims(sset->block.data, dims);
else
- printf("DEFAULT");
+ HDfprintf(stdout, "DEFAULT");
- printf("%s %s\n", dump_header_format->blockend,
- dump_header_format->blockblockend);
+ HDfprintf(stdout, "%s %s\n", dump_header_format->blockend, dump_header_format->blockblockend);
}
/*-------------------------------------------------------------------------
@@ -2493,18 +2478,22 @@ dump_subsetting_header(struct subset_t *sset, int dims)
static void
dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index)
{
- h5tool_format_t *outputformat = &dataformat;
- int status = -1;
- void *buf = NULL;
- hid_t space, type, p_type;
H5S_class_t space_type;
- int ndims, i;
- hsize_t size[64], nelmts = 1, alloc_size;
+ int ndims;
+ int i;
+ hid_t space;
+ hid_t type;
+ hid_t p_type;
+ hsize_t size[64];
+ hsize_t alloc_size;
+ hsize_t nelmts = 1;
int depth;
int stdindent = COL; /* should be 3 */
+ int status = -1;
+ void *buf = NULL;
+ h5tool_format_t *outputformat = &dataformat;
- if (fp_format)
- {
+ if (fp_format) {
outputformat->fmt_double = fp_format;
outputformat->fmt_float = fp_format;
}
@@ -2575,16 +2564,15 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index)
}
indentation(indent);
- begin_obj(dump_header_format->databegin, (const char *)NULL,
- dump_header_format->datablockbegin);
+ begin_obj(dump_header_format->databegin, (const char *)NULL, dump_header_format->datablockbegin);
/* Print all the values. */
if(obj_data == DATASET_DATA) {
- hid_t f_type = H5Dget_type(obj_id);
- char string_prefix[64];
- h5tool_format_t string_dataformat;
+ h5tool_format_t string_dataformat;
+ char string_prefix[64];
+ hid_t f_type = H5Dget_type(obj_id);
- if(display_char && H5Tget_size(f_type) == 1 && H5Tget_class(f_type) == H5T_INTEGER) {
+ if((display_char && H5Tget_size(f_type) == 1) && (H5Tget_class(f_type) == H5T_INTEGER)) {
/*
* Print 1-byte integer data as an ASCII character string
* instead of integers if the `-r' or `--string' command-line
@@ -2611,7 +2599,6 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index)
outputformat = &string_dataformat;
}
-
status = h5tools_dump_dset(stdout, outputformat, obj_id, -1, sset, depth);
H5Tclose(f_type);
@@ -2624,9 +2611,8 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index)
status = SUCCEED;
}
else {
- char string_prefix[64];
- h5tool_format_t string_dataformat;
-
+ char string_prefix[64];
+ h5tool_format_t string_dataformat;
/* VL data special information */
unsigned int vl_data = 0; /* contains VL datatypes */
@@ -2636,7 +2622,9 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index)
ndims = H5Sget_simple_extent_dims(space, size, NULL);
/* Check if we have VL data in the dataset's datatype */
- if (h5tools_detect_vlen(p_type) == TRUE)
+ if (h5tools_detect_vlen_str(p_type) == TRUE)
+ vl_data = TRUE;
+ if (H5Tdetect_class(p_type, H5T_VLEN) == TRUE)
vl_data = TRUE;
for (i = 0; i < ndims; i++)
@@ -2677,15 +2665,15 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index)
outputformat = &string_dataformat;
}
- status = h5tools_dump_mem(stdout, outputformat, obj_id, p_type,
- space, buf, depth);
+ status = h5tools_dump_mem(stdout, outputformat, obj_id, p_type, space, buf, depth);
/* Reclaim any VL memory, if necessary */
if (vl_data)
H5Dvlen_reclaim(p_type, space, H5P_DEFAULT, buf);
free(buf);
- } else
+ }
+ else
status = SUCCEED;
H5Tclose(p_type);
@@ -2706,8 +2694,7 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset, int display_index)
if (sset && obj_data == DATASET_DATA) {
indentation(indent);
- end_obj(dump_header_format->subsettingend,
- dump_header_format->subsettingblockend);
+ end_obj(dump_header_format->subsettingend, dump_header_format->subsettingblockend);
indent -= COL;
}
}
@@ -2729,9 +2716,9 @@ static void
dump_oid(hid_t oid)
{
indentation(indent + COL);
- printf("%s %s %d %s\n", OBJID, BEGIN, oid, END);
+ HDfprintf(stdout, "%s %s %d %s\n", OBJID, BEGIN, oid, END);
}
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
+
/*-------------------------------------------------------------------------
* Function: dump_packed_bits
*
@@ -2744,7 +2731,8 @@ dump_oid(hid_t oid)
static void
dump_packed_bits(unsigned int packed_index, hid_t type)
{
- int packed_bits_size = 0;
+ int packed_bits_size = 0;
+
hid_t n_type = h5tools_get_native_type(type);
if(H5Tget_class(n_type)==H5T_INTEGER) {
if(H5Tequal(n_type, H5T_NATIVE_SCHAR) == TRUE) {
@@ -2783,12 +2771,11 @@ dump_packed_bits(unsigned int packed_index, hid_t type)
indentation(indent + COL);
if ((packed_bits_size>0) && (packed_offset[packed_index] + packed_length[packed_index]) > packed_bits_size) {
error_msg("Packed Bit offset+length value(%d) too large. Max is %d\n",
- packed_offset[packed_index]+packed_length[packed_index], packed_bits_size);
+ packed_offset[packed_index]+packed_length[packed_index], packed_bits_size);
packed_mask[packed_index] = 0;
};
- printf("%s %s=%d %s=%d\n", PACKED_BITS, PACKED_OFFSET, packed_offset[packed_index], PACKED_LENGTH, packed_length[packed_index]);
+ HDfprintf(stdout, "%s %s=%d %s=%d\n", PACKED_BITS, PACKED_OFFSET, packed_offset[packed_index], PACKED_LENGTH, packed_length[packed_index]);
}
-#endif
/*-------------------------------------------------------------------------
* Function: dump_comment
@@ -2806,9 +2793,9 @@ dump_packed_bits(unsigned int packed_index, hid_t type)
static void
dump_comment(hid_t obj_id)
{
- size_t buf_size = 0;
- char* comment = NULL;
+ size_t buf_size = 0;
ssize_t cmt_bufsize = -1;
+ char *comment = NULL;
cmt_bufsize = H5Oget_comment(obj_id, comment, buf_size);
@@ -2821,7 +2808,7 @@ dump_comment(hid_t obj_id)
if(cmt_bufsize > 0) {
comment[cmt_bufsize] = '\0'; /* necessary because null char is not returned */
indentation(indent);
- printf("COMMENT \"%s\"\n", comment);
+ HDfprintf(stdout, "COMMENT \"%s\"\n", comment);
} /* end if */
HDfree(comment);
}
@@ -2843,15 +2830,14 @@ dump_comment(hid_t obj_id)
*
*-------------------------------------------------------------------------
*/
-
static void dump_fill_value(hid_t dcpl,hid_t type_id, hid_t obj_id)
{
- h5tools_context_t ctx; /*print context */
+ h5tools_context_t ctx; /* print context */
size_t size;
- void *buf=NULL;
- hsize_t nelmts=1;
- h5tool_format_t *outputformat = &dataformat;
hid_t n_type;
+ hsize_t nelmts = 1;
+ void *buf = NULL;
+ h5tool_format_t *outputformat = &dataformat;
memset(&ctx, 0, sizeof(ctx));
ctx.indent_level=2;
@@ -2899,7 +2885,7 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
unsigned szip_pixels_per_block;
hsize_t chsize[64]; /* chunk size in elements */
int rank; /* rank */
- char name[256]; /* external file name */
+ char name[256]; /* external file name */
off_t offset; /* offset of external file */
hsize_t size; /* size of external file */
H5D_fill_value_t fvstatus;
@@ -2920,44 +2906,40 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
*-------------------------------------------------------------------------
*/
indentation(indent + COL);
- printf("%s %s\n", STORAGE_LAYOUT, BEGIN);
+ HDfprintf(stdout, "%s %s\n", STORAGE_LAYOUT, BEGIN);
if (H5D_CHUNKED == H5Pget_layout(dcpl_id)) {
/*start indent */
indent += COL;
indentation(indent + COL);
- printf("%s ", CHUNKED);
+ HDfprintf(stdout, "%s ", CHUNKED);
rank = H5Pget_chunk(dcpl_id,NELMTS(chsize),chsize);
HDfprintf(stdout,"%s %Hu", dump_header_format->dataspacedimbegin, chsize[0]);
- for ( i=1; i<rank; i++)
+ for (i=1; i<rank; i++)
HDfprintf(stdout, ", %Hu", chsize[i]);
- printf(" %s\n", dump_header_format->dataspacedimend);
+ HDfprintf(stdout, " %s\n", dump_header_format->dataspacedimend);
indentation(indent + COL);
-
/* if there are filters, print a compression ratio */
- if ( nfilters )
- {
-
- hid_t sid = H5Dget_space( obj_id );
- hid_t tid = H5Dget_type( obj_id );
- size_t datum_size = H5Tget_size( tid );
- hsize_t dims[H5S_MAX_RANK];
- int ndims = H5Sget_simple_extent_dims( sid, dims, NULL);
- hsize_t nelmts = 1;
- double ratio = 0;
- int ok = 0;
+ if (nfilters) {
+ hsize_t dims[H5S_MAX_RANK];
+ hsize_t nelmts = 1;
+ double ratio = 0;
+ int ok = 0;
+
+ hid_t tid = H5Dget_type(obj_id);
+ hid_t sid = H5Dget_space(obj_id);
+ size_t datum_size = H5Tget_size(tid);
+ int ndims = H5Sget_simple_extent_dims(sid, dims, NULL);
/* only print the compression ratio for these filters */
- for ( i = 0; i < nfilters; i++)
- {
+ for (i = 0; i < nfilters; i++) {
cd_nelmts = NELMTS(cd_values);
filtn = H5Pget_filter2(dcpl_id, (unsigned)i, &filt_flags, &cd_nelmts,
- cd_values, sizeof(f_name), f_name, NULL);
+ cd_values, sizeof(f_name), f_name, NULL);
- switch (filtn)
- {
+ switch (filtn) {
case H5Z_FILTER_DEFLATE:
case H5Z_FILTER_SZIP:
case H5Z_FILTER_NBIT:
@@ -2967,12 +2949,10 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
}
}
- if (ndims && ok )
- {
+ if (ndims && ok) {
hsize_t uncomp_size;
- for (i = 0; i < ndims; i++)
- {
+ for (i = 0; i < ndims; i++) {
nelmts *= dims[i];
}
uncomp_size = nelmts * datum_size;
@@ -2988,26 +2968,24 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
else
HDfprintf(stdout, "SIZE %Hu\n ", storage_size);
-
H5Sclose(sid);
H5Tclose(tid);
}
- else
- {
+ else {
HDfprintf(stdout, "SIZE %Hu\n ", storage_size);
}
/*end indent */
indent -= COL;
indentation(indent + COL);
- printf("%s\n",END);
+ HDfprintf(stdout, "%s\n",END);
}
else if (H5D_COMPACT == H5Pget_layout(dcpl_id)) {
/*start indent */
indent += COL;
indentation(indent + COL);
- printf("%s\n", COMPACT);
+ HDfprintf(stdout, "%s\n", COMPACT);
indentation(indent + COL);
HDfprintf(stdout, "SIZE %Hu\n", storage_size);
@@ -3015,7 +2993,7 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
/*end indent */
indent -= COL;
indentation(indent + COL);
- printf("%s\n",END);
+ HDfprintf(stdout, "%s\n",END);
}
else if (H5D_CONTIGUOUS == H5Pget_layout(dcpl_id)) {
int next;
@@ -3030,10 +3008,10 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
/*start indent */
indent += COL;
indentation(indent + COL);
- printf("%s\n", CONTIGUOUS);
+ HDfprintf(stdout, "%s\n", CONTIGUOUS);
indentation(indent + COL);
- printf("%s %s\n", EXTERNAL, BEGIN);
+ HDfprintf(stdout, "%s %s\n", EXTERNAL, BEGIN);
/*start indent */
indent += COL;
@@ -3045,18 +3023,18 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
/*end indent */
indent -= COL;
indentation(indent + COL);
- printf("%s\n",END);
+ HDfprintf(stdout, "%s\n",END);
/*end indent */
indent -= COL;
indentation(indent + COL);
- printf("%s\n",END);
+ HDfprintf(stdout, "%s\n",END);
}
else {
/*start indent */
indent += COL;
indentation(indent + COL);
- printf("%s\n", CONTIGUOUS);
+ HDfprintf(stdout, "%s\n", CONTIGUOUS);
indentation(indent + COL);
HDfprintf(stdout,"SIZE %Hu\n", storage_size);
@@ -3066,17 +3044,15 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
/*end indent */
indent -= COL;
indentation(indent + COL);
- printf("%s\n",END);
+ HDfprintf(stdout, "%s\n",END);
}
}
/*-------------------------------------------------------------------------
* FILTERS
*-------------------------------------------------------------------------
*/
-
-
indentation(indent + COL);
- printf("%s %s\n", FILTERS, BEGIN);
+ HDfprintf(stdout, "%s %s\n", FILTERS, BEGIN);
indent += COL;
if (nfilters) {
@@ -3088,15 +3064,15 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
switch (filtn) {
case H5Z_FILTER_DEFLATE:
indentation(indent + COL);
- printf("%s %s %s %d %s\n", DEFLATE, BEGIN, DEFLATE_LEVEL, cd_values[0], END);
+ HDfprintf(stdout, "%s %s %s %d %s\n", DEFLATE, BEGIN, DEFLATE_LEVEL, cd_values[0], END);
break;
case H5Z_FILTER_SHUFFLE:
indentation(indent + COL);
- printf("%s\n", SHUFFLE);
+ HDfprintf(stdout, "%s\n", SHUFFLE);
break;
case H5Z_FILTER_FLETCHER32:
indentation(indent + COL);
- printf("%s\n", FLETCHER32);
+ HDfprintf(stdout, "%s\n", FLETCHER32);
break;
case H5Z_FILTER_SZIP:
{
@@ -3104,69 +3080,69 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
szip_pixels_per_block=cd_values[1];
indentation(indent + COL);
- printf("%s %s\n",SZIP, BEGIN);
+ HDfprintf(stdout, "%s %s\n",SZIP, BEGIN);
/*start indent */
indent += COL;
indentation(indent + COL);
- printf("PIXELS_PER_BLOCK %d\n", szip_pixels_per_block);
+ HDfprintf(stdout, "PIXELS_PER_BLOCK %d\n", szip_pixels_per_block);
indentation(indent + COL);
if (szip_options_mask & H5_SZIP_CHIP_OPTION_MASK)
- printf("MODE %s\n", "HARDWARE");
+ HDfprintf(stdout, "MODE %s\n", "HARDWARE");
else if (szip_options_mask & H5_SZIP_ALLOW_K13_OPTION_MASK)
- printf("MODE %s\n", "K13");
+ HDfprintf(stdout, "MODE %s\n", "K13");
indentation(indent + COL);
if (szip_options_mask & H5_SZIP_EC_OPTION_MASK)
- printf("CODING %s\n", "ENTROPY");
+ HDfprintf(stdout, "CODING %s\n", "ENTROPY");
else if (szip_options_mask & H5_SZIP_NN_OPTION_MASK)
- printf("CODING %s\n", "NEAREST NEIGHBOUR");
+ HDfprintf(stdout, "CODING %s\n", "NEAREST NEIGHBOUR");
indentation(indent + COL);
if (szip_options_mask & H5_SZIP_LSB_OPTION_MASK)
- printf("BYTE_ORDER %s\n", "LSB");
+ HDfprintf(stdout, "BYTE_ORDER %s\n", "LSB");
else if (szip_options_mask & H5_SZIP_MSB_OPTION_MASK)
- printf("BYTE_ORDER %s\n", "MSB");
+ HDfprintf(stdout, "BYTE_ORDER %s\n", "MSB");
indentation(indent + COL);
if (szip_options_mask & H5_SZIP_RAW_OPTION_MASK)
- printf("HEADER %s\n", "RAW");
+ HDfprintf(stdout, "HEADER %s\n", "RAW");
/*end indent */
indent -= COL;
indentation(indent + COL);
- printf("%s\n",END);
+ HDfprintf(stdout, "%s\n",END);
}
break;
case H5Z_FILTER_NBIT:
indentation(indent + COL);
- printf("%s\n", NBIT);
+ HDfprintf(stdout, "%s\n", NBIT);
break;
case H5Z_FILTER_SCALEOFFSET:
indentation(indent + COL);
- printf("%s %s %s %d %s\n", SCALEOFFSET, BEGIN, SCALEOFFSET_MINBIT, cd_values[0], END);
+ HDfprintf(stdout, "%s %s %s %d %s\n", SCALEOFFSET, BEGIN, SCALEOFFSET_MINBIT, cd_values[0], END);
break;
default:
indentation(indent + COL);
if (H5Zfilter_avail(filtn))
- printf("%s %s\n", "USER_REGISTERED_FILTER", BEGIN);
+ HDfprintf(stdout, "%s %s\n", "USER_REGISTERED_FILTER", BEGIN);
else
- printf("%s %s\n", "UNKNOWN_FILTER", BEGIN);
+ HDfprintf(stdout, "%s %s\n", "UNKNOWN_FILTER", BEGIN);
/*start indent */
indent += COL;
indentation(indent + COL);
- printf("FILTER_ID %d\n", filtn);
+ HDfprintf(stdout, "FILTER_ID %d\n", filtn);
if (f_name[0]!='\0') {
indentation(indent + COL);
- printf("COMMENT %s\n", f_name);
+ HDfprintf(stdout, "COMMENT %s\n", f_name);
}
if (cd_nelmts) {
indentation(indent + COL);
- printf("%s %s ","PARAMS", BEGIN);
+ HDfprintf(stdout, "%s %s ","PARAMS", BEGIN);
for (j=0; j<cd_nelmts; j++)
- printf("%d ", cd_values[j]);
- printf("%s\n", END);
+ HDfprintf(stdout, "%d ", cd_values[j]);
+ HDfprintf(stdout, "%s\n", END);
}
break;
}/*switch*/
@@ -3174,70 +3150,70 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
}/*nfilters*/
else {
indentation(indent + COL);
- printf("NONE\n");
+ HDfprintf(stdout, "NONE\n");
}
indent -= COL;
indentation(indent + COL);
- printf("%s\n",END);
+ HDfprintf(stdout, "%s\n",END);
/*-------------------------------------------------------------------------
* FILLVALUE
*-------------------------------------------------------------------------
*/
indentation(indent + COL);
- printf("%s %s\n", FILLVALUE, BEGIN);
+ HDfprintf(stdout, "%s %s\n", FILLVALUE, BEGIN);
/*start indent */
indent += COL;
indentation(indent + COL);
- printf("FILL_TIME ");
+ HDfprintf(stdout, "FILL_TIME ");
H5Pget_fill_time(dcpl_id, &ft);
switch ( ft ) {
case H5D_FILL_TIME_ALLOC:
- printf("%s", "H5D_FILL_TIME_ALLOC\n");
+ HDfprintf(stdout, "%s", "H5D_FILL_TIME_ALLOC\n");
break;
case H5D_FILL_TIME_NEVER:
- printf("%s", "H5D_FILL_TIME_NEVER\n");
+ HDfprintf(stdout, "%s", "H5D_FILL_TIME_NEVER\n");
break;
case H5D_FILL_TIME_IFSET:
- printf("%s", "H5D_FILL_TIME_IFSET\n");
+ HDfprintf(stdout, "%s", "H5D_FILL_TIME_IFSET\n");
break;
default:
assert(0);
break;
}
indentation(indent + COL);
- printf("%s ", "VALUE ");
+ HDfprintf(stdout, "%s ", "VALUE ");
H5Pfill_value_defined(dcpl_id, &fvstatus);
if (fvstatus == H5D_FILL_VALUE_UNDEFINED)
- printf("%s\n", "H5D_FILL_VALUE_UNDEFINED");
+ HDfprintf(stdout, "%s\n", "H5D_FILL_VALUE_UNDEFINED");
else
dump_fill_value(dcpl_id,type_id,obj_id);
/* end indent */
indent -= COL;
indentation(indent + COL);
- printf("\n");
+ HDfprintf(stdout, "\n");
indentation(indent + COL);
- printf("%s\n",END);
+ HDfprintf(stdout, "%s\n",END);
/*-------------------------------------------------------------------------
* ALLOCATION_TIME
*-------------------------------------------------------------------------
*/
indentation(indent + COL);
- printf("ALLOCATION_TIME %s\n",BEGIN);
+ HDfprintf(stdout, "ALLOCATION_TIME %s\n",BEGIN);
/*start indent */
indent += COL;
indentation(indent + COL);
H5Pget_alloc_time(dcpl_id, &at);
switch (at) {
case H5D_ALLOC_TIME_EARLY:
- printf("%s", "H5D_ALLOC_TIME_EARLY\n");
+ HDfprintf(stdout, "%s", "H5D_ALLOC_TIME_EARLY\n");
break;
case H5D_ALLOC_TIME_INCR:
- printf("%s", "H5D_ALLOC_TIME_INCR\n");
+ HDfprintf(stdout, "%s", "H5D_ALLOC_TIME_INCR\n");
break;
case H5D_ALLOC_TIME_LATE:
- printf("%s", "H5D_ALLOC_TIME_LATE\n");
+ HDfprintf(stdout, "%s", "H5D_ALLOC_TIME_LATE\n");
break;
default:
assert(0);
@@ -3246,7 +3222,7 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id)
/* end indent */
indent -= COL;
indentation(indent + COL);
- printf("%s\n",END);
+ HDfprintf(stdout, "%s\n",END);
}
/*-------------------------------------------------------------------------
@@ -3275,9 +3251,9 @@ dump_fcpl(hid_t fid)
unsigned sym_lk; /* symbol table B-tree leaf 'K' value */
unsigned sym_ik; /* symbol table B-tree internal 'K' value */
unsigned istore_ik; /* indexed storage B-tree internal 'K' value */
- H5F_file_space_type_t fs_strategy; /* file space strategy */
- hsize_t fs_threshold; /* free-space section threshold */
- H5F_info2_t finfo; /* file information */
+ H5F_file_space_type_t fs_strategy; /* file space strategy */
+ hsize_t fs_threshold; /* free-space section threshold */
+ H5F_info2_t finfo; /* file information */
fcpl=H5Fget_create_plist(fid);
H5Fget_info2(fid, &finfo);
@@ -3295,23 +3271,23 @@ dump_fcpl(hid_t fid)
* SUPER_BLOCK
*-------------------------------------------------------------------------
*/
- printf("%s %s\n",SUPER_BLOCK, BEGIN);
+ HDfprintf(stdout, "%s %s\n",SUPER_BLOCK, BEGIN);
indentation(indent + COL);
- printf("%s %u\n","SUPERBLOCK_VERSION", finfo.super.version);
+ HDfprintf(stdout, "%s %u\n","SUPERBLOCK_VERSION", finfo.super.version);
indentation(indent + COL);
- printf("%s %u\n","FREELIST_VERSION", finfo.free.version);
+ HDfprintf(stdout, "%s %u\n","FREELIST_VERSION", finfo.free.version);
indentation(indent + COL);
- printf("%s %u\n","SYMBOLTABLE_VERSION", 0); /* Retain this for backward compatibility, for now (QAK) */
+ HDfprintf(stdout, "%s %u\n","SYMBOLTABLE_VERSION", 0); /* Retain this for backward compatibility, for now (QAK) */
indentation(indent + COL);
- printf("%s %u\n","OBJECTHEADER_VERSION", finfo.sohm.version);
+ HDfprintf(stdout, "%s %u\n","OBJECTHEADER_VERSION", finfo.sohm.version);
indentation(indent + COL);
HDfprintf(stdout,"%s %Hd\n","OFFSET_SIZE", (long long)off_size);
indentation(indent + COL);
HDfprintf(stdout,"%s %Hd\n","LENGTH_SIZE", (long long)len_size);
indentation(indent + COL);
- printf("%s %u\n","BTREE_RANK", sym_ik);
+ HDfprintf(stdout, "%s %u\n","BTREE_RANK", sym_ik);
indentation(indent + COL);
- printf("%s %d\n","BTREE_LEAF", sym_lk);
+ HDfprintf(stdout, "%s %d\n","BTREE_LEAF", sym_lk);
if (H5FD_CORE==fdriver)
HDstrcpy(dname,"H5FD_CORE");
@@ -3341,34 +3317,34 @@ dump_fcpl(hid_t fid)
/* Take out this because the driver used can be different from the
* standard output. */
/*indentation(indent + COL);
- printf("%s %s\n","FILE_DRIVER", dname);*/
+ HDfprintf(stdout, "%s %s\n","FILE_DRIVER", dname);*/
indentation(indent + COL);
- printf("%s %u\n","ISTORE_K", istore_ik);
+ HDfprintf(stdout, "%s %u\n","ISTORE_K", istore_ik);
indentation(indent + COL);
if(fs_strategy == H5F_FILE_SPACE_ALL_PERSIST)
- printf("%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_ALL_PERSIST");
+ HDfprintf(stdout, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_ALL_PERSIST");
else if(fs_strategy == H5F_FILE_SPACE_ALL)
- printf("%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_ALL");
+ HDfprintf(stdout, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_ALL");
else if(fs_strategy == H5F_FILE_SPACE_AGGR_VFD)
- printf("%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_AGGR_VFD");
+ HDfprintf(stdout, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_AGGR_VFD");
else if(fs_strategy == H5F_FILE_SPACE_VFD)
- printf("%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_VFD");
+ HDfprintf(stdout, "%s %s\n", "FILE_SPACE_STRATEGY", "H5F_FILE_SPACE_VFD");
else
- printf("%s %s\n", "FILE_SPACE_STRATEGY", "Unknown strategy");
+ HDfprintf(stdout, "%s %s\n", "FILE_SPACE_STRATEGY", "Unknown strategy");
indentation(indent + COL);
HDfprintf(stdout, "%s %Hu\n","FREE_SPACE_THRESHOLD", fs_threshold);
- printf("%s\n",END);
+ HDfprintf(stdout, "%s\n",END);
/*-------------------------------------------------------------------------
* USER_BLOCK
*-------------------------------------------------------------------------
*/
- printf("USER_BLOCK %s\n",BEGIN);
+ HDfprintf(stdout, "USER_BLOCK %s\n",BEGIN);
indentation(indent + COL);
HDfprintf(stdout,"%s %Hu\n","USERBLOCK_SIZE", userblock);
- printf("%s\n",END);
+ HDfprintf(stdout, "%s\n",END);
}
/*-------------------------------------------------------------------------
@@ -3387,8 +3363,7 @@ dump_fcpl(hid_t fid)
static void dump_fcontents(hid_t fid)
{
-
- printf("%s %s\n",FILE_CONTENTS, BEGIN);
+ HDfprintf(stdout, "%s %s\n",FILE_CONTENTS, BEGIN);
/* special case of unamed types in root group */
if (unamedtype) {
@@ -3396,17 +3371,16 @@ static void dump_fcontents(hid_t fid)
for (u = 0; u < type_table->nobjs; u++) {
if (!type_table->objs[u].recorded)
- printf(" %-10s /#"H5_PRINTF_HADDR_FMT"\n", "datatype", type_table->objs[u].objno);
+ HDfprintf(stdout, " %-10s /#"H5_PRINTF_HADDR_FMT"\n", "datatype", type_table->objs[u].objno);
}
}
/* print objects in the files */
h5trav_print(fid);
- printf(" %s\n",END);
+ HDfprintf(stdout, " %s\n",END);
}
-
/*-------------------------------------------------------------------------
* Function: set_output_file
*
@@ -3426,36 +3400,32 @@ static void dump_fcontents(hid_t fid)
static int
set_output_file(const char *fname, int is_bin)
{
- FILE *f; /* temporary holding place for the stream pointer
-* so that rawdatastream is changed only when succeeded */
-
- if (rawdatastream && rawdatastream != stdout) {
- if (fclose(rawdatastream))
- perror("closing rawdatastream");
- else
- rawdatastream = NULL;
- }
-
- /* binary output */
- if (is_bin)
- {
- if ((f = fopen(fname, "wb")) != NULL) {
- rawdatastream = f;
- return 0;
- }
- }
- else
- {
- if ((f = fopen(fname, "w")) != NULL) {
- rawdatastream = f;
- return 0;
- }
- }
-
- return -1;
-}
+ FILE *f; /* temporary holding place for the stream pointer
+ * so that rawdatastream is changed only when succeeded */
+ if (rawdatastream && rawdatastream != stdout) {
+ if (fclose(rawdatastream))
+ perror("closing rawdatastream");
+ else
+ rawdatastream = NULL;
+ }
+
+ /* binary output */
+ if (is_bin) {
+ if ((f = fopen(fname, "wb")) != NULL) {
+ rawdatastream = f;
+ return 0;
+ }
+ }
+ else {
+ if ((f = fopen(fname, "w")) != NULL) {
+ rawdatastream = f;
+ return 0;
+ }
+ }
+ return -1;
+}
/*-------------------------------------------------------------------------
* Function: set_binary_form
@@ -3475,21 +3445,20 @@ set_output_file(const char *fname, int is_bin)
static int
set_binary_form(const char *form)
{
- int bform=-1;
-
- if (strcmp(form,"NATIVE")==0 ||
- strcmp(form,"MEMORY")==0)
- {/* native form */
- bform = 0;
- }
- else if (strcmp(form,"FILE")==0) /* file type form */
- bform = 1;
- else if (strcmp(form,"LE")==0) /* convert to little endian */
- bform = 2;
- else if (strcmp(form,"BE")==0) /* convert to big endian */
- bform = 3;
-
- return bform;
+ int bform = -1;
+
+ if (strcmp(form,"NATIVE") == 0 || strcmp(form,"MEMORY") == 0) {
+ /* native form */
+ bform = 0;
+ }
+ else if (strcmp(form,"FILE") == 0) /* file type form */
+ bform = 1;
+ else if (strcmp(form,"LE") == 0) /* convert to little endian */
+ bform = 2;
+ else if (strcmp(form,"BE") == 0) /* convert to big endian */
+ bform = 3;
+
+ return bform;
}
/*-------------------------------------------------------------------------
@@ -3511,18 +3480,16 @@ set_binary_form(const char *form)
static H5_index_t
set_sort_by(const char *form)
{
- H5_index_t idx_type = H5_INDEX_UNKNOWN;
+ H5_index_t idx_type = H5_INDEX_UNKNOWN;
- if (strcmp(form,"name")==0) /* H5_INDEX_NAME */
- idx_type = H5_INDEX_NAME;
- else if (strcmp(form,"creation_order")==0) /* H5_INDEX_CRT_ORDER */
- idx_type = H5_INDEX_CRT_ORDER;
+ if (strcmp(form,"name")==0) /* H5_INDEX_NAME */
+ idx_type = H5_INDEX_NAME;
+ else if (strcmp(form,"creation_order")==0) /* H5_INDEX_CRT_ORDER */
+ idx_type = H5_INDEX_CRT_ORDER;
- return idx_type;
+ return idx_type;
}
-
-
/*-------------------------------------------------------------------------
* Function: set_sort_order
*
@@ -3542,17 +3509,16 @@ set_sort_by(const char *form)
static H5_iter_order_t
set_sort_order(const char *form)
{
- H5_iter_order_t iter_order = H5_ITER_UNKNOWN;
+ H5_iter_order_t iter_order = H5_ITER_UNKNOWN;
- if (strcmp(form,"ascending")==0) /* H5_ITER_INC */
- iter_order = H5_ITER_INC;
- else if (strcmp(form,"descending")==0) /* H5_ITER_DEC */
- iter_order = H5_ITER_DEC;
+ if (strcmp(form,"ascending")==0) /* H5_ITER_INC */
+ iter_order = H5_ITER_INC;
+ else if (strcmp(form,"descending")==0) /* H5_ITER_DEC */
+ iter_order = H5_ITER_DEC;
- return iter_order;
+ return iter_order;
}
-
/*-------------------------------------------------------------------------
* Function: handle_attributes
*
@@ -3600,7 +3566,9 @@ parse_hsize_list(const char *h_list, subset_d *d)
{
hsize_t *p_list;
const char *ptr;
- unsigned int size_count = 0, i = 0, last_digit = 0;
+ unsigned int size_count = 0;
+ unsigned int i = 0;
+ unsigned int last_digit = 0;
if (!h_list || !*h_list || *h_list == ';')
return;
@@ -3613,7 +3581,8 @@ parse_hsize_list(const char *h_list, subset_d *d)
size_count++;
last_digit = 1;
- } else {
+ }
+ else {
last_digit = 0;
}
@@ -3674,24 +3643,21 @@ parse_subset_params(char *dset)
while (*brace && *brace != ';')
brace++;
- if (*brace)
- brace++;
+ if (*brace) brace++;
parse_hsize_list(brace, &s->stride);
while (*brace && *brace != ';')
brace++;
- if (*brace)
- brace++;
+ if (*brace) brace++;
parse_hsize_list(brace, &s->count);
while (*brace && *brace != ';')
brace++;
- if (*brace)
- brace++;
+ if (*brace) brace++;
parse_hsize_list(brace, &s->block);
}
@@ -3700,7 +3666,6 @@ parse_subset_params(char *dset)
return s;
}
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
/*-------------------------------------------------------------------------
* Function: parse_mask_list
*
@@ -3718,102 +3683,99 @@ parse_subset_params(char *dset)
static int
parse_mask_list(const char *h_list)
{
- const char *ptr;
- int offset_value, length_value;
+ int offset_value;
+ int length_value;
unsigned long long temp_mask;
+ const char *ptr = NULL;
/* sanity check */
HDassert(h_list);
HDmemset(packed_mask,0,sizeof(packed_mask));
-
+
packed_bits_num = 0;
/* scan in pair of offset,length separated by commas. */
ptr = h_list;
while (*ptr) {
- /* scan for an offset which is an unsigned int */
- if (!HDisdigit(*ptr)){
- error_msg("Bad mask list(%s)\n", h_list);
- return FAIL;
- }
- offset_value = HDatoi(ptr);
- if (offset_value < 0 || offset_value >= PACKED_BITS_SIZE_MAX){
- error_msg("Packed Bit offset value(%d) must be between 0 and %d\n",
- offset_value, PACKED_BITS_SIZE_MAX - 1);
- return FAIL;
- }
-
- /* skip to end of integer */
- while (HDisdigit(*++ptr))
- ;
- /* Look for the common separator */
- if (*ptr++ != ',') {
- error_msg("Bad mask list(%s), missing expected comma separator.\n", h_list);
- return FAIL;
- }
-
- /* scan for a length which is a positive int */
- if (!HDisdigit(*ptr)){
- error_msg("Bad mask list(%s)\n", h_list);
- return FAIL;
- }
- length_value = HDatoi(ptr);
- if (length_value <= 0){
- error_msg("Packed Bit length value(%d) must be positive.\n",
- length_value);
- return FAIL;
- };
- if ((offset_value + length_value) > PACKED_BITS_SIZE_MAX){
- error_msg("Packed Bit offset+length value(%d) too large. Max is %d\n",
- offset_value+length_value, PACKED_BITS_SIZE_MAX);
- return FAIL;
- };
-
- /* skip to end of int */
- while (HDisdigit(*++ptr))
- ;
-
- /* store the offset,length pair */
- if (packed_bits_num >= PACKED_BITS_MAX){
- /* too many requests */
- error_msg("Too many masks requested (max. %d). Mask list(%s)\n",
- PACKED_BITS_MAX, h_list);
- return FAIL;
- }
- packed_offset[packed_bits_num] = offset_value;
- packed_length[packed_bits_num] = length_value;
- /* create the bit mask by left shift 1's by length, then negate it. */
- /* After packed_mask is calculated, packed_length is not needed but */
- /* keep it for debug purpose. */
- temp_mask = ~0L;
- if(length_value<8*sizeof(unsigned long long)) {
- temp_mask = temp_mask << length_value;
- packed_mask[packed_bits_num] = ~temp_mask;
- }
- else
- packed_mask[packed_bits_num] = temp_mask;
- packed_bits_num++;
-
- /* skip a possible comma separator */
- if (*ptr == ','){
- if (!(*++ptr)){
- /* unexpected end of string */
- error_msg("Bad mask list(%s), unexpected end of string.\n", h_list);
- return FAIL;
- }
- }
+ /* scan for an offset which is an unsigned int */
+ if (!HDisdigit(*ptr)) {
+ error_msg("Bad mask list(%s)\n", h_list);
+ return FAIL;
+ }
+ offset_value = HDatoi(ptr);
+ if (offset_value < 0 || offset_value >= PACKED_BITS_SIZE_MAX) {
+ error_msg("Packed Bit offset value(%d) must be between 0 and %d\n",
+ offset_value, PACKED_BITS_SIZE_MAX - 1);
+ return FAIL;
+ }
+
+ /* skip to end of integer */
+ while (HDisdigit(*++ptr))
+ ;
+ /* Look for the common separator */
+ if (*ptr++ != ',') {
+ error_msg("Bad mask list(%s), missing expected comma separator.\n", h_list);
+ return FAIL;
+ }
+
+ /* scan for a length which is a positive int */
+ if (!HDisdigit(*ptr)) {
+ error_msg("Bad mask list(%s)\n", h_list);
+ return FAIL;
+ }
+ length_value = HDatoi(ptr);
+ if (length_value <= 0) {
+ error_msg("Packed Bit length value(%d) must be positive.\n", length_value);
+ return FAIL;
+ }
+ if ((offset_value + length_value) > PACKED_BITS_SIZE_MAX){
+ error_msg("Packed Bit offset+length value(%d) too large. Max is %d\n",
+ offset_value+length_value, PACKED_BITS_SIZE_MAX);
+ return FAIL;
+ }
+
+ /* skip to end of int */
+ while (HDisdigit(*++ptr))
+ ;
+
+ /* store the offset,length pair */
+ if (packed_bits_num >= PACKED_BITS_MAX) {
+ /* too many requests */
+ error_msg("Too many masks requested (max. %d). Mask list(%s)\n", PACKED_BITS_MAX, h_list);
+ return FAIL;
+ }
+ packed_offset[packed_bits_num] = offset_value;
+ packed_length[packed_bits_num] = length_value;
+ /* create the bit mask by left shift 1's by length, then negate it. */
+ /* After packed_mask is calculated, packed_length is not needed but */
+ /* keep it for debug purpose. */
+ temp_mask = ~0L;
+ if(length_value<8*sizeof(unsigned long long)) {
+ temp_mask = temp_mask << length_value;
+ packed_mask[packed_bits_num] = ~temp_mask;
+ }
+ else
+ packed_mask[packed_bits_num] = temp_mask;
+ packed_bits_num++;
+
+ /* skip a possible comma separator */
+ if (*ptr == ',') {
+ if (!(*++ptr)) {
+ /* unexpected end of string */
+ error_msg("Bad mask list(%s), unexpected end of string.\n", h_list);
+ return FAIL;
+ }
+ }
}
HDassert(packed_bits_num <= PACKED_BITS_MAX);
- if (packed_bits_num == 0){
- /* got no masks! */
+ if (packed_bits_num == 0) {
+ /* got no masks! */
error_msg("Bad mask list(%s)\n", h_list);
return FAIL;
}
return SUCCEED;
}
-#endif
-
/*-------------------------------------------------------------------------
* Function: handle_datasets
*
@@ -3843,16 +3805,12 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis
struct subset_t *sset = (struct subset_t *)data;
const char *real_name = display_name ? display_name : dset;
- if((dsetid = H5Dopen2(fid, dset, H5P_DEFAULT)) < 0)
- {
- if (pe)
- {
- begin_obj(dump_header_format->datasetbegin, real_name,
- dump_header_format->datasetblockbegin);
+ if((dsetid = H5Dopen2(fid, dset, H5P_DEFAULT)) < 0) {
+ if (pe) {
+ begin_obj(dump_header_format->datasetbegin, real_name, dump_header_format->datasetblockbegin);
indentation(COL);
error_msg("unable to open dataset \"%s\"\n", real_name);
- end_obj(dump_header_format->datasetend,
- dump_header_format->datasetblockend);
+ end_obj(dump_header_format->datasetend, dump_header_format->datasetblockend);
h5tools_setstatus(EXIT_FAILURE);
}
return;
@@ -3951,14 +3909,13 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis
if(found_obj) {
if (found_obj->displayed) {
indentation(indent);
- begin_obj(dump_header_format->datasetbegin, real_name,
- dump_header_format->datasetblockbegin);
+ begin_obj(dump_header_format->datasetbegin, real_name, dump_header_format->datasetblockbegin);
indentation(indent + COL);
- printf("%s \"%s\"\n", HARDLINK, found_obj->objname);
+ HDfprintf(stdout, "%s \"%s\"\n", HARDLINK, found_obj->objname);
indentation(indent);
- end_obj(dump_header_format->datasetend,
- dump_header_format->datasetblockend);
- } else {
+ end_obj(dump_header_format->datasetend, dump_header_format->datasetblockend);
+ }
+ else {
found_obj->displayed = TRUE;
dump_dataset(dsetid, real_name, sset);
}
@@ -3994,16 +3951,13 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis
*-------------------------------------------------------------------------
*/
static void
-handle_groups(hid_t fid, const char *group, void UNUSED * data, int pe, const char * display_name)
+handle_groups(hid_t fid, const char *group, void UNUSED *data, int pe, const char *display_name)
{
hid_t gid;
const char *real_name = display_name ? display_name : group;
-
- if((gid = H5Gopen2(fid, group, H5P_DEFAULT)) < 0)
- {
- if ( pe )
- {
+ if((gid = H5Gopen2(fid, group, H5P_DEFAULT)) < 0) {
+ if (pe) {
begin_obj(dump_header_format->groupbegin, real_name, dump_header_format->groupblockbegin);
indentation(COL);
error_msg("unable to open group \"%s\"\n", real_name);
@@ -4011,12 +3965,10 @@ handle_groups(hid_t fid, const char *group, void UNUSED * data, int pe, const ch
h5tools_setstatus(EXIT_FAILURE);
}
}
- else
- {
+ else {
size_t new_len = HDstrlen(group) + 1;
- if(prefix_len <= new_len)
- {
+ if(prefix_len <= new_len) {
prefix_len = new_len;
prefix = (char *)HDrealloc(prefix, prefix_len);
} /* end if */
@@ -4052,68 +4004,63 @@ handle_links(hid_t fid, const char *links, void UNUSED * data, int UNUSED pe, co
if(H5Lget_info(fid, links, &linfo, H5P_DEFAULT) < 0) {
error_msg("unable to get link info from \"%s\"\n", links);
h5tools_setstatus(EXIT_FAILURE);
- } else if(linfo.type == H5L_TYPE_HARD) {
+ }
+ else if(linfo.type == H5L_TYPE_HARD) {
error_msg("\"%s\" is a hard link\n", links);
h5tools_setstatus(EXIT_FAILURE);
- } else {
+ }
+ else {
char *buf = (char *)HDmalloc(linfo.u.val_size);
switch(linfo.type) {
- case H5L_TYPE_SOFT: /* Soft link */
- begin_obj(dump_header_format->softlinkbegin, links,
- dump_header_format->softlinkblockbegin);
- indentation(COL);
- if(H5Lget_val(fid, links, buf, linfo.u.val_size, H5P_DEFAULT) >= 0)
- printf("LINKTARGET \"%s\"\n", buf);
- else {
- error_msg("h5dump error: unable to get link value for \"%s\"\n",
- links);
- h5tools_setstatus(EXIT_FAILURE);
- }
- end_obj(dump_header_format->softlinkend,
- dump_header_format->softlinkblockend);
- break;
+ case H5L_TYPE_SOFT: /* Soft link */
+ begin_obj(dump_header_format->softlinkbegin, links, dump_header_format->softlinkblockbegin);
+ indentation(COL);
+ if(H5Lget_val(fid, links, buf, linfo.u.val_size, H5P_DEFAULT) >= 0)
+ HDfprintf(stdout, "LINKTARGET \"%s\"\n", buf);
+ else {
+ error_msg("h5dump error: unable to get link value for \"%s\"\n", links);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ end_obj(dump_header_format->softlinkend, dump_header_format->softlinkblockend);
+ break;
- case H5L_TYPE_EXTERNAL:
- begin_obj(dump_header_format->udlinkbegin, links,
- dump_header_format->udlinkblockbegin);
- indentation(COL);
- begin_obj(dump_header_format->extlinkbegin, links,
- dump_header_format->extlinkblockbegin);
- if(H5Lget_val(fid, links, buf, linfo.u.val_size, H5P_DEFAULT) >= 0) {
- const char *elink_file;
- const char *elink_path;
-
- if(H5Lunpack_elink_val(buf, linfo.u.val_size, NULL, &elink_file, &elink_path)>=0) {
- indentation(COL);
- printf("LINKCLASS %d\n", linfo.type);
- indentation(COL);
- printf("TARGETFILE \"%s\"\n", elink_file);
- indentation(COL);
- printf("TARGETPATH \"%s\"\n", elink_path);
- } else {
- error_msg("h5dump error: unable to unpack external link value for \"%s\"\n", links);
- h5tools_setstatus(EXIT_FAILURE);
- }
- } else {
- error_msg("h5dump error: unable to get external link value for \"%s\"\n", links);
+ case H5L_TYPE_EXTERNAL:
+ begin_obj(dump_header_format->udlinkbegin, links, dump_header_format->udlinkblockbegin);
+ indentation(COL);
+ begin_obj(dump_header_format->extlinkbegin, links, dump_header_format->extlinkblockbegin);
+ if(H5Lget_val(fid, links, buf, linfo.u.val_size, H5P_DEFAULT) >= 0) {
+ const char *elink_file;
+ const char *elink_path;
+
+ if(H5Lunpack_elink_val(buf, linfo.u.val_size, NULL, &elink_file, &elink_path)>=0) {
+ indentation(COL);
+ HDfprintf(stdout, "LINKCLASS %d\n", linfo.type);
+ indentation(COL);
+ HDfprintf(stdout, "TARGETFILE \"%s\"\n", elink_file);
+ indentation(COL);
+ HDfprintf(stdout, "TARGETPATH \"%s\"\n", elink_path);
+ }
+ else {
+ error_msg("h5dump error: unable to unpack external link value for \"%s\"\n", links);
h5tools_setstatus(EXIT_FAILURE);
}
- end_obj(dump_header_format->extlinkend,
- dump_header_format->extlinkblockend);
- break;
+ }
+ else {
+ error_msg("h5dump error: unable to get external link value for \"%s\"\n", links);
+ h5tools_setstatus(EXIT_FAILURE);
+ }
+ end_obj(dump_header_format->extlinkend, dump_header_format->extlinkblockend);
+ break;
- default:
- begin_obj(dump_header_format->udlinkbegin, links,
- dump_header_format->udlinkblockbegin);
- indentation(COL);
- begin_obj(dump_header_format->udlinkbegin, links,
- dump_header_format->udlinkblockbegin);
- indentation(COL);
- printf("LINKCLASS %d\n", linfo.type);
- end_obj(dump_header_format->udlinkend,
- dump_header_format->udlinkblockend);
- break;
+ default:
+ begin_obj(dump_header_format->udlinkbegin, links, dump_header_format->udlinkblockbegin);
+ indentation(COL);
+ begin_obj(dump_header_format->udlinkbegin, links, dump_header_format->udlinkblockbegin);
+ indentation(COL);
+ HDfprintf(stdout, "LINKCLASS %d\n", linfo.type);
+ end_obj(dump_header_format->udlinkend, dump_header_format->udlinkblockend);
+ break;
} /* end switch */
HDfree(buf);
} /* end else */
@@ -4144,17 +4091,14 @@ handle_datatypes(hid_t fid, const char *type, void UNUSED * data, int pe, const
hid_t type_id;
const char *real_name = display_name ? display_name : type;
- if((type_id = H5Topen2(fid, type, H5P_DEFAULT)) < 0)
- {
+ if((type_id = H5Topen2(fid, type, H5P_DEFAULT)) < 0) {
/* check if type is unamed datatype */
unsigned idx = 0;
- while(idx < type_table->nobjs )
- {
+ while(idx < type_table->nobjs ) {
char name[128];
- if(!type_table->objs[idx].recorded)
- {
+ if(!type_table->objs[idx].recorded) {
/* unamed datatype */
sprintf(name, "/#"H5_PRINTF_HADDR_FMT, type_table->objs[idx].objno);
@@ -4165,22 +4109,17 @@ handle_datatypes(hid_t fid, const char *type, void UNUSED * data, int pe, const
idx++;
} /* end while */
- if(idx == type_table->nobjs)
- {
- if ( pe )
- {
+ if(idx == type_table->nobjs) {
+ if (pe) {
/* unknown type */
- begin_obj(dump_header_format->datatypebegin, real_name,
- dump_header_format->datatypeblockbegin);
+ begin_obj(dump_header_format->datatypebegin, real_name, dump_header_format->datatypeblockbegin);
indentation(COL);
error_msg("unable to open datatype \"%s\"\n", real_name);
- end_obj(dump_header_format->datatypeend,
- dump_header_format->datatypeblockend);
+ end_obj(dump_header_format->datatypeend, dump_header_format->datatypeblockend);
h5tools_setstatus(EXIT_FAILURE);
}
}
- else
- {
+ else {
hid_t dsetid = H5Dopen2(fid, type_table->objs[idx].objname, H5P_DEFAULT);
type_id = H5Dget_type(dsetid);
dump_named_datatype(type_id, real_name);
@@ -4188,8 +4127,7 @@ handle_datatypes(hid_t fid, const char *type, void UNUSED * data, int pe, const
H5Dclose(dsetid);
}
}
- else
- {
+ else {
dump_named_datatype(type_id, real_name);
if(H5Tclose(type_id) < 0)
@@ -4199,6 +4137,54 @@ handle_datatypes(hid_t fid, const char *type, void UNUSED * data, int pe, const
/*-------------------------------------------------------------------------
+ * Function: free_handler
+ *
+ * Purpose: Convenience function to free the handler_t structures. Needs a
+ * length variable (LEN) to know how many in the array it needs
+ * to free
+ *
+ * Return: Nothing
+ *
+ * Programmer: Bill Wendling
+ * Tuesday, 20. February 2001
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+static void
+free_handler(struct handler_t *hand, int len)
+{
+ register int i;
+
+ if(hand) {
+ for (i = 0; i < len; i++) {
+ if(hand[i].obj) {
+ free(hand[i].obj);
+ hand[i].obj=NULL;
+ }
+
+ if (hand[i].subset_info) {
+ if(hand[i].subset_info->start.data)
+ free(hand[i].subset_info->start.data);
+ if(hand[i].subset_info->stride.data)
+ free(hand[i].subset_info->stride.data);
+ if(hand[i].subset_info->count.data)
+ free(hand[i].subset_info->count.data);
+ if(hand[i].subset_info->block.data)
+ free(hand[i].subset_info->block.data);
+
+ free(hand[i].subset_info);
+ hand[i].subset_info=NULL;
+ }
+ }
+
+ free(hand);
+ }
+}
+
+
+/*-------------------------------------------------------------------------
* Function: parse_command_line
*
* Purpose: Parse the command line for the h5dumper.
@@ -4220,17 +4206,22 @@ handle_datatypes(hid_t fid, const char *type, void UNUSED * data, int pe, const
static struct handler_t *
parse_command_line(int argc, const char *argv[])
{
- struct handler_t *hand, *last_dset = NULL;
- int i, opt, last_was_dset = FALSE;
+ struct handler_t *hand = NULL;
+ struct handler_t *last_dset = NULL;
+ int i;
+ int opt;
+ int last_was_dset = FALSE;
/* no arguments */
if (argc == 1) {
usage(h5tools_getprogname());
- leave(EXIT_FAILURE);
+ goto error;
}
/* this will be plenty big enough to hold the info */
- hand = (struct handler_t *)calloc((size_t)argc, sizeof(struct handler_t));
+ if((hand = (struct handler_t *)calloc((size_t)argc, sizeof(struct handler_t)))==NULL) {
+ goto error;
+ }
/* parse command line options */
while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
@@ -4276,7 +4267,10 @@ parse_start:
break;
case 'V':
print_version(h5tools_getprogname());
- leave(EXIT_SUCCESS);
+ free_handler(hand, argc);
+ hand = NULL;
+ h5tools_setstatus(EXIT_SUCCESS);
+ goto done;
break;
case 'w':
nCols = HDatoi(opt_arg);
@@ -4352,13 +4346,13 @@ parse_start:
if ( bin_output ) {
if (set_output_file(opt_arg, 1) < 0) {
usage(h5tools_getprogname());
- leave(EXIT_FAILURE);
+ goto error;
}
}
else {
if (set_output_file(opt_arg, 0) < 0) {
usage(h5tools_getprogname());
- leave(EXIT_FAILURE);
+ goto error;
}
}
@@ -4372,7 +4366,7 @@ parse_start:
if ( ( bin_form = set_binary_form(opt_arg)) < 0) {
/* failed to set binary form */
usage(h5tools_getprogname());
- leave(EXIT_FAILURE);
+ goto error;
}
}
bin_output = TRUE;
@@ -4380,7 +4374,7 @@ parse_start:
if (set_output_file(outfname, 1) < 0) {
/* failed to set output file */
usage(h5tools_getprogname());
- leave(EXIT_FAILURE);
+ goto error;
}
last_was_dset = FALSE;
@@ -4391,7 +4385,7 @@ parse_start:
if ( ( sort_by = set_sort_by(opt_arg)) < 0) {
/* failed to set "sort by" form */
usage(h5tools_getprogname());
- leave(EXIT_FAILURE);
+ goto error;
}
break;
@@ -4399,24 +4393,21 @@ parse_start:
if ( ( sort_order = set_sort_order(opt_arg)) < 0) {
/* failed to set "sort order" form */
usage(h5tools_getprogname());
- leave(EXIT_FAILURE);
+ goto error;
}
break;
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
case 'M':
if (!last_was_dset) {
- error_msg("option `-%c' can only be used after --dataset option\n",
- opt);
- leave(EXIT_FAILURE);
+ error_msg("option `-%c' can only be used after --dataset option\n", opt);
+ goto error;
}
if (parse_mask_list(opt_arg) != SUCCEED){
- usage(h5tools_getprogname());
- leave(EXIT_FAILURE);
+ usage(h5tools_getprogname());
+ goto error;
}
display_packed_bits = TRUE;
break;
-#endif
/** begin XML parameters **/
case 'x':
@@ -4444,21 +4435,19 @@ parse_start:
fp_format = opt_arg;
break;
-
-
-
case 'X':
/* specify XML namespace (default="hdf5:"), or none */
/* To Do: check format of this value? */
- if (!useschema) {
+ if (!useschema) {
usage(h5tools_getprogname());
- leave(EXIT_FAILURE);
- }
- if (strcmp(opt_arg,":") == 0) {
+ goto error;
+ }
+ if (strcmp(opt_arg,":") == 0) {
xmlnsprefix = "";
- } else {
+ }
+ else {
xmlnsprefix = opt_arg;
- }
+ }
break;
/** end XML parameters **/
@@ -4470,9 +4459,8 @@ parse_start:
struct subset_t *s;
if (!last_was_dset) {
- error_msg("option `-%c' can only be used after --dataset option\n",
- opt);
- leave(EXIT_FAILURE);
+ error_msg("option `-%c' can only be used after --dataset option\n", opt);
+ goto error;
}
if (last_dset->subset_info) {
@@ -4481,7 +4469,8 @@ parse_start:
* the two.
*/
s = last_dset->subset_info;
- } else {
+ }
+ else {
last_dset->subset_info = s = (struct subset_t *)calloc(1, sizeof(struct subset_t));
}
@@ -4498,11 +4487,36 @@ parse_start:
*/
do {
switch ((char)opt) {
- case 's': if(s->start.data) free(s->start.data); parse_hsize_list(opt_arg, &s->start); break;
- case 'S': if(s->stride.data) free(s->stride.data); parse_hsize_list(opt_arg, &s->stride); break;
- case 'c': if(s->count.data) free(s->count.data); parse_hsize_list(opt_arg, &s->count); break;
- case 'k': if(s->block.data) free(s->block.data); parse_hsize_list(opt_arg, &s->block); break;
- default: goto end_collect;
+ case 's':
+ if (s->start.data) {
+ free(s->start.data);
+ s->start.data = NULL;
+ }
+ parse_hsize_list(opt_arg, &s->start);
+ break;
+ case 'S':
+ if (s->stride.data) {
+ free(s->stride.data);
+ s->stride.data = NULL;
+ }
+ parse_hsize_list(opt_arg, &s->stride);
+ break;
+ case 'c':
+ if (s->count.data) {
+ free(s->count.data);
+ s->count.data = NULL;
+ }
+ parse_hsize_list(opt_arg, &s->count);
+ break;
+ case 'k':
+ if (s->block.data) {
+ free(s->block.data);
+ s->block.data = NULL;
+ }
+ parse_hsize_list(opt_arg, &s->block);
+ break;
+ default:
+ goto end_collect;
}
} while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF);
@@ -4521,11 +4535,14 @@ end_collect:
break;
case 'h':
usage(h5tools_getprogname());
- leave(EXIT_SUCCESS);
+ free_handler(hand, argc);
+ hand = NULL;
+ h5tools_setstatus(EXIT_SUCCESS);
+ goto done;
case '?':
default:
usage(h5tools_getprogname());
- leave(EXIT_FAILURE);
+ goto error;
}
}
@@ -4534,48 +4551,21 @@ parse_end:
if (argc <= opt_ind) {
error_msg("missing file name\n");
usage(h5tools_getprogname());
- leave(EXIT_FAILURE);
+ goto error;
}
+done:
return hand;
-}
-
-
-/*-------------------------------------------------------------------------
- * Function: free_handler
- *
- * Purpose: Convenience function to free the handler_t structures. Needs a
- * length variable (LEN) to know how many in the array it needs
- * to free
- *
- * Return: Nothing
- *
- * Programmer: Bill Wendling
- * Tuesday, 20. February 2001
- *
- * Modifications:
- *
- *-------------------------------------------------------------------------
- */
-static void
-free_handler(struct handler_t *hand, int len)
-{
- register int i;
- for (i = 0; i < len; i++) {
- free(hand[i].obj);
-
- if (hand[i].subset_info) {
- free(hand[i].subset_info->start.data);
- free(hand[i].subset_info->stride.data);
- free(hand[i].subset_info->count.data);
- free(hand[i].subset_info->block.data);
- free(hand[i].subset_info);
- }
- }
-
- free(hand);
+error:
+ if (hand) {
+ free_handler(hand, argc);
+ hand = NULL;
}
+ h5tools_setstatus(EXIT_FAILURE);
+ return hand;
+}
+
/*-------------------------------------------------------------------------
* Function: main
*
@@ -4618,14 +4608,15 @@ free_handler(struct handler_t *hand, int len)
int
main(int argc, const char *argv[])
{
- hid_t fid, gid;
- char *fname = NULL;
- void *edata;
+ hid_t fid = -1;
+ hid_t gid = -1;
H5E_auto2_t func;
H5O_info_t oi;
struct handler_t *hand;
int i;
unsigned u;
+ void *edata;
+ char *fname = NULL;
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
@@ -4638,11 +4629,15 @@ main(int argc, const char *argv[])
/* Initialize h5tools lib */
h5tools_init();
- hand = parse_command_line(argc, argv);
+ if((hand = parse_command_line(argc, argv))==NULL) {
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
if (bin_output && outfname == NULL) {
error_msg("binary output requires a file name, use -o <filename>\n");
- leave(EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
if (enable_error_stack)
@@ -4653,35 +4648,41 @@ main(int argc, const char *argv[])
if (!display_all) {
error_msg("option \"%s\" not available for XML\n",
"to display selected objects");
- leave(EXIT_FAILURE);
- } else if (display_bb) {
- error_msg("option \"%s\" not available for XML\n",
- "--boot-block");
- leave(EXIT_FAILURE);
- } else if (display_oid == 1) {
- error_msg("option \"%s\" not available for XML\n",
- "--object-ids");
- leave(EXIT_FAILURE);
- } else if (display_char == TRUE) {
- error_msg("option \"%s\" not available for XML\n",
- "--string");
- leave(EXIT_FAILURE);
- } else if (usingdasho) {
- error_msg("option \"%s\" not available for XML\n",
- "--output");
- leave(EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
+ else if (display_bb) {
+ error_msg("option \"%s\" not available for XML\n", "--boot-block");
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
+ else if (display_oid == 1) {
+ error_msg("option \"%s\" not available for XML\n", "--object-ids");
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
+ else if (display_char == TRUE) {
+ error_msg("option \"%s\" not available for XML\n", "--string");
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
+ }
+ else if (usingdasho) {
+ error_msg("option \"%s\" not available for XML\n", "--output");
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
- } else {
+ }
+ else {
if (xml_dtd_uri) {
- warn_msg("option \"%s\" only applies with XML: %s\n",
- "--xml-dtd", xml_dtd_uri);
+ warn_msg("option \"%s\" only applies with XML: %s\n", "--xml-dtd", xml_dtd_uri);
}
}
if (argc <= opt_ind) {
error_msg("missing file name\n");
usage(h5tools_getprogname());
- leave(EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
fname = HDstrdup(argv[opt_ind]);
@@ -4689,7 +4690,8 @@ main(int argc, const char *argv[])
if (fid < 0) {
error_msg("unable to open file \"%s\"\n", fname);
- leave(EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
/* allocate and initialize internal data structure */
@@ -4700,7 +4702,6 @@ main(int argc, const char *argv[])
if(doxml) {
/* initialize XML */
-
/* reset prefix! */
HDstrcpy(prefix, "");
@@ -4708,19 +4709,21 @@ main(int argc, const char *argv[])
if (xml_dtd_uri == NULL) {
if (useschema) {
xml_dtd_uri = DEFAULT_XSD;
- } else {
+ }
+ else {
xml_dtd_uri = DEFAULT_DTD;
xmlnsprefix = "";
}
- } else {
+ }
+ else {
if (useschema && strcmp(xmlnsprefix,"")) {
error_msg("Cannot set Schema URL for a qualified namespace--use -X or -U option with -D \n");
- leave(EXIT_FAILURE);
+ h5tools_setstatus(EXIT_FAILURE);
+ goto done;
}
}
}
-
/* Get object info for root group */
if(H5Oget_info_by_name(fid, "/", &oi, H5P_DEFAULT) < 0) {
error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
@@ -4747,35 +4750,36 @@ main(int argc, const char *argv[])
/* start to dump - display file header information */
if (!doxml) {
- begin_obj(dump_header_format->filebegin, fname,
- dump_header_format->fileblockbegin);
- } else {
- printf("<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n");
+ begin_obj(dump_header_format->filebegin, fname, dump_header_format->fileblockbegin);
+ }
+ else {
+ HDfprintf(stdout, "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n");
/* alternative first element, depending on schema or DTD. */
if (useschema) {
if (strcmp(xmlnsprefix,"") == 0) {
- printf("<HDF5-File xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:noNamespaceSchemaLocation=\"%s\">\n",
- xml_dtd_uri);
- } else {
+ HDfprintf(stdout, "<HDF5-File xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:noNamespaceSchemaLocation=\"%s\">\n",
+ xml_dtd_uri);
+ }
+ else {
/* TO DO: make -url option work in this case (may need new option) */
- char * ns;
+ char *ns;
char *indx;
ns = HDstrdup(xmlnsprefix);
indx = strrchr(ns,(int)':');
if (indx) *indx = '\0';
- printf("<%sHDF5-File xmlns:%s=\"http://hdfgroup.org/DTDs/HDF5-File\" "
- "xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" "
- "xsi:schemaLocation=\"http://hdfgroup.org/DTDs/HDF5-File "
- "http://www.hdfgroup.org/DTDs/HDF5-File.xsd\">\n",xmlnsprefix,ns);
+ HDfprintf(stdout, "<%sHDF5-File xmlns:%s=\"http://hdfgroup.org/DTDs/HDF5-File\" "
+ "xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" "
+ "xsi:schemaLocation=\"http://hdfgroup.org/DTDs/HDF5-File "
+ "http://www.hdfgroup.org/DTDs/HDF5-File.xsd\">\n",xmlnsprefix,ns);
HDfree(ns);
}
- } else {
- printf("<!DOCTYPE HDF5-File PUBLIC \"HDF5-File.dtd\" \"%s\">\n",
- xml_dtd_uri);
- printf("<HDF5-File>\n");
+ }
+ else {
+ HDfprintf(stdout, "<!DOCTYPE HDF5-File PUBLIC \"HDF5-File.dtd\" \"%s\">\n", xml_dtd_uri);
+ HDfprintf(stdout, "<HDF5-File>\n");
}
}
@@ -4790,30 +4794,23 @@ main(int argc, const char *argv[])
dump_fcpl(fid);
}
- if(display_all)
- {
+ if(display_all) {
if((gid = H5Gopen2(fid, "/", H5P_DEFAULT)) < 0)
{
error_msg("unable to open root group\n");
h5tools_setstatus(EXIT_FAILURE);
}
- else
- {
-
+ else {
dump_function_table->dump_group_function(gid, "/" );
-
}
- if(H5Gclose(gid) < 0)
- {
+ if(H5Gclose(gid) < 0) {
error_msg("unable to close root group\n");
h5tools_setstatus(EXIT_FAILURE);
}
-
}
- else
- {
+ else {
/* Note: this option is not supported for XML */
if(doxml) {
error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
@@ -4828,8 +4825,9 @@ main(int argc, const char *argv[])
if (!doxml) {
end_obj(dump_header_format->fileend, dump_header_format->fileblockend);
- } else {
- printf("</%sHDF5-File>\n", xmlnsprefix);
+ }
+ else {
+ HDfprintf(stdout, "</%sHDF5-File>\n", xmlnsprefix);
}
done:
@@ -4839,6 +4837,7 @@ done:
if (H5Fclose(fid) < 0)
h5tools_setstatus(EXIT_FAILURE);
+ if(hand)
free_handler(hand, argc);
HDfree(prefix);
@@ -4868,30 +4867,30 @@ done:
static void
print_enum(hid_t type)
{
- char **name = NULL; /*member names */
- unsigned char *value = NULL; /*value array */
- unsigned char *copy = NULL; /*a pointer to value array */
- unsigned nmembs; /*number of members */
- int nchars; /*number of output characters */
- hid_t super; /*enum base integer type */
- hid_t native = -1; /*native integer datatype */
- size_t dst_size; /*destination value type size */
- unsigned i;
-
- nmembs = (unsigned)H5Tget_nmembers(type);
+ char **name = NULL; /*member names */
+ unsigned char *value = NULL; /*value array */
+ unsigned char *copy = NULL; /*a pointer to value array */
+ unsigned nmembs; /*number of members */
+ int nchars; /*number of output characters */
+ hid_t super; /*enum base integer type */
+ hid_t native = -1; /*native integer datatype */
+ size_t dst_size; /*destination value type size */
+ unsigned i;
+
+ nmembs = (unsigned) H5Tget_nmembers(type);
super = H5Tget_super(type);
/*
* Determine what datatype to use for the native values. To simplify
* things we entertain three possibilities:
* 1. long long -- the largest native signed integer
- * 2. unsigned long long -- the largest native unsigned integer
- * 3. raw format
+ * 2. unsigned long long -- the largest native unsigned integer
+ * 3. raw format
*/
- if(H5Tget_size(type) <= sizeof(long long)) {
+ if (H5Tget_size(type) <= sizeof(long long)) {
dst_size = sizeof(long long);
- if(H5T_SGN_NONE == H5Tget_sign(type))
+ if (H5T_SGN_NONE == H5Tget_sign(type))
native = H5T_NATIVE_ULLONG;
else
native = H5T_NATIVE_LLONG;
@@ -4900,12 +4899,12 @@ print_enum(hid_t type)
dst_size = H5Tget_size(type);
/* Get the names and raw values of all members */
- name = (char **)calloc(nmembs, sizeof(char *));
- value = (unsigned char *)calloc(nmembs, MAX(H5Tget_size(type), dst_size));
+ name = (char **) calloc(nmembs, sizeof(char *));
+ value = (unsigned char *) calloc(nmembs, MAX(H5Tget_size(type), dst_size));
for (i = 0; i < nmembs; i++) {
- name[i] = H5Tget_member_name(type, i);
- H5Tget_member_value(type, i, value + i * H5Tget_size(type));
+ name[i] = H5Tget_member_name(type, i);
+ H5Tget_member_value(type, i, value + i * H5Tget_size(type));
}
/* Convert values to native datatype */
@@ -4919,44 +4918,44 @@ print_enum(hid_t type)
/* Print members */
for (i = 0; i < nmembs; i++) {
- indentation(indent + COL);
- nchars = printf("\"%s\"", name[i]);
- printf("%*s ", MAX(0, 16 - nchars), "");
+ indentation(indent + COL);
+ nchars = HDfprintf(stdout, "\"%s\"", name[i]);
+ HDfprintf(stdout, "%*s ", MAX(0, 16 - nchars), "");
- if (native < 0) {
+ if (native < 0) {
size_t j;
- printf("0x");
-
- for (j = 0; j < dst_size; j++)
- printf("%02x", value[i * dst_size + j]);
- } else if (H5T_SGN_NONE == H5Tget_sign(native)) {
- /*On SGI Altix(cobalt), wrong values were printed out with "value+i*dst_size"
- *strangely, unless use another pointer "copy".*/
- copy = value+i*dst_size;
- HDfprintf(stdout,"%" H5_PRINTF_LL_WIDTH "u", *((unsigned long long *)
- ((void *)copy)));
- } else {
- /*On SGI Altix(cobalt), wrong values were printed out with "value+i*dst_size"
- *strangely, unless use another pointer "copy".*/
- copy = value+i*dst_size;
- HDfprintf(stdout,"%" H5_PRINTF_LL_WIDTH "d",
- *((long long *) ((void *)copy)));
- }
+ HDfprintf(stdout, "0x");
+
+ for (j = 0; j < dst_size; j++)
+ HDfprintf(stdout, "%02x", value[i * dst_size + j]);
+ }
+ else if (H5T_SGN_NONE == H5Tget_sign(native)) {
+ /*On SGI Altix(cobalt), wrong values were printed out with "value+i*dst_size"
+ *strangely, unless use another pointer "copy".*/
+ copy = value + i * dst_size;
+ HDfprintf(stdout, "%" H5_PRINTF_LL_WIDTH "u", *((unsigned long long *) ((void *) copy)));
+ }
+ else {
+ /*On SGI Altix(cobalt), wrong values were printed out with "value+i*dst_size"
+ *strangely, unless use another pointer "copy".*/
+ copy = value + i * dst_size;
+ HDfprintf(stdout, "%" H5_PRINTF_LL_WIDTH "d", *((long long *) ((void *) copy)));
+ }
- printf(";\n");
+ HDfprintf(stdout, ";\n");
}
/* Release resources */
for (i = 0; i < nmembs; i++)
- free(name[i]);
+ free(name[i]);
free(name);
free(value);
H5Tclose(super);
if (0 == nmembs)
- printf("\n%*s <empty>", indent + 4, "");
+ HDfprintf(stdout, "\n%*s <empty>", indent + 4, "");
}
@@ -4967,7 +4966,6 @@ print_enum(hid_t type)
* 'gen'; 0 - return null if not found
* 1 - generate a fake entry and return fake id.
*/
-
int
xml_name_to_XID(const char *str , char *outstr, int outlen, int gen)
{
@@ -4984,16 +4982,19 @@ xml_name_to_XID(const char *str , char *outstr, int outlen, int gen)
objno = ref_path_table_gen_fake(str);
sprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno);
return 0;
- } else {
+ }
+ else {
return 1;
}
}
- } else {
+ }
+ else {
if (gen) {
objno = ref_path_table_gen_fake(str);
sprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno);
return 0;
- } else {
+ }
+ else {
return 1;
}
}
@@ -5027,38 +5028,42 @@ static const char *apos = "&apos;";
static char *
xml_escape_the_name(const char *str)
{
- size_t extra;
- size_t len;
- size_t i;
- const char *cp;
- char *ncp;
- char *rcp;
+ size_t extra;
+ size_t len;
+ size_t i;
+ const char *cp;
+ char *ncp;
+ char *rcp;
if (!str)
- return NULL;
+ return NULL;
cp = str;
len = strlen(str);
extra = 0;
for (i = 0; i < len; i++) {
- if (*cp == '\"') {
- extra += (strlen(quote) - 1);
- } else if (*cp == '\'') {
- extra += (strlen(apos) - 1);
- } else if (*cp == '<') {
- extra += (strlen(lt) - 1);
- } else if (*cp == '>') {
- extra += (strlen(gt) - 1);
- } else if (*cp == '&') {
- extra += (strlen(amp) - 1);
- }
+ if (*cp == '\"') {
+ extra += (strlen(quote) - 1);
+ }
+ else if (*cp == '\'') {
+ extra += (strlen(apos) - 1);
+ }
+ else if (*cp == '<') {
+ extra += (strlen(lt) - 1);
+ }
+ else if (*cp == '>') {
+ extra += (strlen(gt) - 1);
+ }
+ else if (*cp == '&') {
+ extra += (strlen(amp) - 1);
+ }
- cp++;
+ cp++;
}
if (extra == 0)
- return HDstrdup(str);
+ return HDstrdup(str);
cp = str;
rcp = ncp = (char *)HDmalloc(len + extra + 1);
@@ -5071,23 +5076,28 @@ xml_escape_the_name(const char *str)
strncpy(ncp, apos, strlen(apos));
ncp += strlen(apos);
cp++;
- } else if (*cp == '<') {
+ }
+ else if (*cp == '<') {
strncpy(ncp, lt, strlen(lt));
ncp += strlen(lt);
cp++;
- } else if (*cp == '>') {
+ }
+ else if (*cp == '>') {
strncpy(ncp, gt, strlen(gt));
ncp += strlen(gt);
cp++;
- } else if (*cp == '\"') {
+ }
+ else if (*cp == '\"') {
strncpy(ncp, quote, strlen(quote));
ncp += strlen(quote);
cp++;
- } else if (*cp == '&') {
+ }
+ else if (*cp == '&') {
strncpy(ncp, amp, strlen(amp));
ncp += strlen(amp);
cp++;
- } else {
+ }
+ else {
*ncp++ = *cp++;
}
}
@@ -5113,74 +5123,85 @@ xml_escape_the_name(const char *str)
static char *
xml_escape_the_string(const char *str, int slen)
{
- size_t extra;
- size_t len;
- size_t i;
- const char *cp;
- char *ncp;
- char *rcp;
+ size_t extra;
+ size_t len;
+ size_t i;
+ const char *cp;
+ char *ncp;
+ char *rcp;
if (!str)
- return NULL;
+ return NULL;
cp = str;
if (slen < 0)
- len = strlen(str);
+ len = strlen(str);
else
- len = slen;
+ len = slen;
extra = 0;
for (i = 0; i < len; i++) {
- if (*cp == '\\') {
- extra++;
- } else if (*cp == '\"') {
- extra++;
- } else if (*cp == '\'') {
- extra += (strlen(apos) - 1);
- } else if (*cp == '<') {
- extra += (strlen(lt) - 1);
- } else if (*cp == '>') {
- extra += (strlen(gt) - 1);
- } else if (*cp == '&') {
- extra += (strlen(amp) - 1);
- }
- cp++;
+ if (*cp == '\\') {
+ extra++;
+ }
+ else if (*cp == '\"') {
+ extra++;
+ }
+ else if (*cp == '\'') {
+ extra += (strlen(apos) - 1);
+ }
+ else if (*cp == '<') {
+ extra += (strlen(lt) - 1);
+ }
+ else if (*cp == '>') {
+ extra += (strlen(gt) - 1);
+ }
+ else if (*cp == '&') {
+ extra += (strlen(amp) - 1);
+ }
+ cp++;
}
cp = str;
- rcp = ncp = (char *)calloc((len + extra + 1), sizeof(char));
+ rcp = ncp = (char *) calloc((len + extra + 1), sizeof(char));
if (ncp == NULL)
- return NULL; /* ?? */
+ return NULL; /* ?? */
for (i = 0; i < len; i++) {
- if (*cp == '\\') {
- *ncp++ = '\\';
- *ncp++ = *cp++;
- } else if (*cp == '\"') {
- *ncp++ = '\\';
- *ncp++ = *cp++;
- } else if (*cp == '\'') {
- strncpy(ncp, apos, strlen(apos));
- ncp += strlen(apos);
- cp++;
- } else if (*cp == '<') {
- strncpy(ncp, lt, strlen(lt));
- ncp += strlen(lt);
- cp++;
- } else if (*cp == '>') {
- strncpy(ncp, gt, strlen(gt));
- ncp += strlen(gt);
- cp++;
- } else if (*cp == '&') {
- strncpy(ncp, amp, strlen(amp));
- ncp += strlen(amp);
- cp++;
- } else {
- *ncp++ = *cp++;
- }
+ if (*cp == '\\') {
+ *ncp++ = '\\';
+ *ncp++ = *cp++;
+ }
+ else if (*cp == '\"') {
+ *ncp++ = '\\';
+ *ncp++ = *cp++;
+ }
+ else if (*cp == '\'') {
+ strncpy(ncp, apos, strlen(apos));
+ ncp += strlen(apos);
+ cp++;
+ }
+ else if (*cp == '<') {
+ strncpy(ncp, lt, strlen(lt));
+ ncp += strlen(lt);
+ cp++;
+ }
+ else if (*cp == '>') {
+ strncpy(ncp, gt, strlen(gt));
+ ncp += strlen(gt);
+ cp++;
+ }
+ else if (*cp == '&') {
+ strncpy(ncp, amp, strlen(amp));
+ ncp += strlen(amp);
+ cp++;
+ }
+ else {
+ *ncp++ = *cp++;
+ }
}
*ncp = '\0';
@@ -5248,327 +5269,336 @@ xml_print_datatype(hid_t type, unsigned in_group)
if (!found_obj->recorded) {
/* 'anonymous' NDT. Use it's object num.
as it's name. */
- printf("<%sNamedDataTypePtr OBJ-XID=\"/%s\"/>\n",
+ HDfprintf(stdout, "<%sNamedDataTypePtr OBJ-XID=\"/%s\"/>\n",
xmlnsprefix, dtxid);
- } else {
+ }
+ else {
/* point to the NDT by name */
char *t_objname = xml_escape_the_name(found_obj->objname);
- printf("<%sNamedDataTypePtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n",
+ HDfprintf(stdout, "<%sNamedDataTypePtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n",
xmlnsprefix, dtxid, t_objname);
free(t_objname);
}
free(dtxid);
- } else {
- printf("<!-- h5dump error: unknown committed type. -->\n");
+ }
+ else {
+ HDfprintf(stdout, "<!-- h5dump error: unknown committed type. -->\n");
h5tools_setstatus(EXIT_FAILURE);
}
- } else {
+ }
+ else {
switch (H5Tget_class(type)) {
- case H5T_INTEGER:
- indentation(indent);
- printf("<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- /* <hdf5:IntegerType ByteOrder="bo" Sign="torf" Size="bytes"/> */
- ord = H5Tget_order(type);
- sgn = H5Tget_sign(type);
- indentation(indent);
- printf("<%sIntegerType ByteOrder=\"",xmlnsprefix);
- switch (ord) {
- case H5T_ORDER_LE:
- printf("LE");
- break;
- case H5T_ORDER_BE:
- printf("BE");
- break;
- case H5T_ORDER_VAX:
- default:
- printf("ERROR_UNKNOWN");
- }
- printf("\" Sign=\"");
- switch (sgn) {
- case H5T_SGN_NONE:
- printf("false");
- break;
- case H5T_SGN_2:
- printf("true");
- break;
- default:
- printf("ERROR_UNKNOWN");
- }
- printf("\" Size=\"");
- sz = H5Tget_size(type);
- printf("%lu", (unsigned long)sz);
- printf("\" />\n");
- indent -= COL;
- indentation(indent);
- printf("</%sAtomicType>\n",xmlnsprefix);
+ case H5T_INTEGER:
+ indentation(indent);
+ HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
+ indent += COL;
+ /* <hdf5:IntegerType ByteOrder="bo" Sign="torf" Size="bytes"/> */
+ ord = H5Tget_order(type);
+ sgn = H5Tget_sign(type);
+ indentation(indent);
+ HDfprintf(stdout, "<%sIntegerType ByteOrder=\"",xmlnsprefix);
+ switch (ord) {
+ case H5T_ORDER_LE:
+ HDfprintf(stdout, "LE");
break;
-
- case H5T_FLOAT:
- /* <hdf5:FloatType ByteOrder="bo" Size="bytes"
- SignBitLocation="bytes"
- ExponentBits="eb" ExponentLocation="el"
- MantissaBits="mb" MantissaLocation="ml" /> */
- ord = H5Tget_order(type);
- indentation(indent);
- printf("<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- indentation(indent);
- printf("<%sFloatType ByteOrder=\"",xmlnsprefix);
- switch (ord) {
- case H5T_ORDER_LE:
- printf("LE");
- break;
- case H5T_ORDER_BE:
- printf("BE");
- break;
- case H5T_ORDER_VAX:
- printf("VAX");
- break;
- default:
- printf("ERROR_UNKNOWN");
- }
- printf("\" Size=\"");
- sz = H5Tget_size(type);
- printf("%lu", (unsigned long)sz);
- H5Tget_fields(type, &spos, &epos, &esize, &mpos, &msize);
- printf("\" SignBitLocation=\"%lu\" ", (unsigned long)spos);
- printf("ExponentBits=\"%lu\" ExponentLocation=\"%lu\" ", (unsigned long)esize, (unsigned long)epos);
- printf("MantissaBits=\"%lu\" MantissaLocation=\"%lu\" />\n",
- (unsigned long)msize, (unsigned long)mpos);
- indent -= COL;
- indentation(indent);
- printf("</%sAtomicType>\n",xmlnsprefix);
+ case H5T_ORDER_BE:
+ HDfprintf(stdout, "BE");
break;
-
- case H5T_TIME:
- indentation(indent);
- printf("<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- indentation(indent);
- printf("<%sTimeType />\n",xmlnsprefix);
- printf("<!-- H5T_TIME: not yet implemented -->");
- indent -= COL;
- indentation(indent);
- printf("</%sAtomicType>\n",xmlnsprefix);
+ case H5T_ORDER_VAX:
+ default:
+ HDfprintf(stdout, "ERROR_UNKNOWN");
+ }
+
+ HDfprintf(stdout, "\" Sign=\"");
+
+ switch (sgn) {
+ case H5T_SGN_NONE:
+ HDfprintf(stdout, "false");
break;
-
- case H5T_STRING:
- /* <hdf5:StringType Cset="cs" StrSize="chars" StrPad="pad" /> */
- size = H5Tget_size(type);
- str_pad = H5Tget_strpad(type);
- cset = H5Tget_cset(type);
- is_vlstr = H5Tis_variable_str(type);
-
- indentation(indent);
- printf("<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- indentation(indent);
- printf("<%sStringType Cset=\"",xmlnsprefix);
- if (cset == H5T_CSET_ASCII) {
- printf("H5T_CSET_ASCII\" ");
- } else {
- printf("unknown_cset\" ");
- }
- if(is_vlstr)
- printf("StrSize=\"H5T_VARIABLE\" StrPad=\"");
- else
- printf("StrSize=\"%d\" StrPad=\"", (int) size);
- if (str_pad == H5T_STR_NULLTERM) {
- printf("H5T_STR_NULLTERM\"/>\n");
- } else if (str_pad == H5T_STR_NULLPAD) {
- printf("H5T_STR_NULLPAD\"/>\n");
- } else if (str_pad == H5T_STR_SPACEPAD) {
- printf("H5T_STR_SPACEPAD\"/>\n");
- } else {
- printf("H5T_STR_ERROR\"/>\n");
- }
- indent -= COL;
- indentation(indent);
- printf("</%sAtomicType>\n",xmlnsprefix);
+ case H5T_SGN_2:
+ HDfprintf(stdout, "true");
break;
+ default:
+ HDfprintf(stdout, "ERROR_UNKNOWN");
+ }
+
+ HDfprintf(stdout, "\" Size=\"");
+ sz = H5Tget_size(type);
+ HDfprintf(stdout, "%lu", (unsigned long)sz);
+ HDfprintf(stdout, "\" />\n");
+ indent -= COL;
+ indentation(indent);
+ HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
+ break;
- case H5T_BITFIELD:
- /* <hdf5:BitfieldType ByteOrder="bo" Size="bytes"/> */
- ord = H5Tget_order(type);
- indentation(indent);
- printf("<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- indentation(indent);
- printf("<%sBitfieldType ByteOrder=\"",xmlnsprefix);
- switch (ord) {
- case H5T_ORDER_LE:
- printf("LE");
- break;
- case H5T_ORDER_BE:
- printf("BE");
- break;
- case H5T_ORDER_VAX:
- default:
- printf("ERROR_UNKNOWN");
- }
- size = H5Tget_size(type);
- printf("\" Size=\"%lu\"/>\n", (unsigned long)size);
- indent -= COL;
- indentation(indent);
- printf("</%sAtomicType>\n",xmlnsprefix);
+ case H5T_FLOAT:
+ /* <hdf5:FloatType ByteOrder="bo" Size="bytes"
+ SignBitLocation="bytes"
+ ExponentBits="eb" ExponentLocation="el"
+ MantissaBits="mb" MantissaLocation="ml" /> */
+ ord = H5Tget_order(type);
+ indentation(indent);
+ HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
+ indent += COL;
+ indentation(indent);
+ HDfprintf(stdout, "<%sFloatType ByteOrder=\"",xmlnsprefix);
+
+ switch (ord) {
+ case H5T_ORDER_LE:
+ HDfprintf(stdout, "LE");
break;
-
- case H5T_OPAQUE:
- /* <hdf5:OpaqueType Tag="tag" Size="bytes" /> */
- indentation(indent);
- printf("<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- indentation(indent);
- mname = H5Tget_tag(type);
- printf("<%sOpaqueType Tag=\"%s\" ",xmlnsprefix, mname);
- free(mname);
- size = H5Tget_size(type);
- printf("Size=\"%lu\"/>\n", (unsigned long)size);
- indent -= COL;
- indentation(indent);
- printf("</%sAtomicType>\n",xmlnsprefix);
+ case H5T_ORDER_BE:
+ HDfprintf(stdout, "BE");
break;
+ case H5T_ORDER_VAX:
+ HDfprintf(stdout, "VAX");
+ break;
+ default:
+ HDfprintf(stdout, "ERROR_UNKNOWN");
+ }
+
+ HDfprintf(stdout, "\" Size=\"");
+ sz = H5Tget_size(type);
+ HDfprintf(stdout, "%lu", (unsigned long)sz);
+ H5Tget_fields(type, &spos, &epos, &esize, &mpos, &msize);
+ HDfprintf(stdout, "\" SignBitLocation=\"%lu\" ", (unsigned long)spos);
+ HDfprintf(stdout, "ExponentBits=\"%lu\" ExponentLocation=\"%lu\" ", (unsigned long)esize, (unsigned long)epos);
+ HDfprintf(stdout, "MantissaBits=\"%lu\" MantissaLocation=\"%lu\" />\n", (unsigned long)msize, (unsigned long)mpos);
+ indent -= COL;
+ indentation(indent);
+ HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
+ break;
- case H5T_COMPOUND:
- /* recursively describe the components of a compound datatype */
+ case H5T_TIME:
+ indentation(indent);
+ HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
+ indent += COL;
+ indentation(indent);
+ HDfprintf(stdout, "<%sTimeType />\n",xmlnsprefix);
+ HDfprintf(stdout, "<!-- H5T_TIME: not yet implemented -->");
+ indent -= COL;
+ indentation(indent);
+ HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
+ break;
- /* type of a dataset */
- nmembers = H5Tget_nmembers(type);
+ case H5T_STRING:
+ /* <hdf5:StringType Cset="cs" StrSize="chars" StrPad="pad" /> */
+ size = H5Tget_size(type);
+ str_pad = H5Tget_strpad(type);
+ cset = H5Tget_cset(type);
+ is_vlstr = H5Tis_variable_str(type);
- indentation(indent);
- printf("<%sCompoundType>\n",xmlnsprefix);
+ indentation(indent);
+ HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
+ indent += COL;
+ indentation(indent);
+ HDfprintf(stdout, "<%sStringType Cset=\"",xmlnsprefix);
+ if (cset == H5T_CSET_ASCII) {
+ HDfprintf(stdout, "H5T_CSET_ASCII\" ");
+ }
+ else {
+ HDfprintf(stdout, "unknown_cset\" ");
+ }
+ if(is_vlstr)
+ HDfprintf(stdout, "StrSize=\"H5T_VARIABLE\" StrPad=\"");
+ else
+ HDfprintf(stdout, "StrSize=\"%d\" StrPad=\"", (int) size);
+ if (str_pad == H5T_STR_NULLTERM) {
+ HDfprintf(stdout, "H5T_STR_NULLTERM\"/>\n");
+ }
+ else if (str_pad == H5T_STR_NULLPAD) {
+ HDfprintf(stdout, "H5T_STR_NULLPAD\"/>\n");
+ }
+ else if (str_pad == H5T_STR_SPACEPAD) {
+ HDfprintf(stdout, "H5T_STR_SPACEPAD\"/>\n");
+ }
+ else {
+ HDfprintf(stdout, "H5T_STR_ERROR\"/>\n");
+ }
+ indent -= COL;
+ indentation(indent);
+ HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
+ break;
- /* List each member Field of the type */
- /* <hdf5:Field FieldName="name" > */
- /* <hdf5:DataType > */
- indent += COL;
- for (i = 0; i < nmembers; i++) {
- char *t_fname;
+ case H5T_BITFIELD:
+ /* <hdf5:BitfieldType ByteOrder="bo" Size="bytes"/> */
+ ord = H5Tget_order(type);
+ indentation(indent);
+ HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
+ indent += COL;
+ indentation(indent);
+ HDfprintf(stdout, "<%sBitfieldType ByteOrder=\"",xmlnsprefix);
+
+ switch (ord) {
+ case H5T_ORDER_LE:
+ HDfprintf(stdout, "LE");
+ break;
+ case H5T_ORDER_BE:
+ HDfprintf(stdout, "BE");
+ break;
+ case H5T_ORDER_VAX:
+ default:
+ HDfprintf(stdout, "ERROR_UNKNOWN");
+ }
+
+ size = H5Tget_size(type);
+ HDfprintf(stdout, "\" Size=\"%lu\"/>\n", (unsigned long)size);
+ indent -= COL;
+ indentation(indent);
+ HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
+ break;
- mname = H5Tget_member_name(type, i);
- mtype = H5Tget_member_type(type, i);
- indentation(indent);
- t_fname = xml_escape_the_name(mname);
- printf("<%sField FieldName=\"%s\">\n",xmlnsprefix, t_fname);
+ case H5T_OPAQUE:
+ /* <hdf5:OpaqueType Tag="tag" Size="bytes" /> */
+ indentation(indent);
+ HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
+ indent += COL;
+ indentation(indent);
+ mname = H5Tget_tag(type);
+ HDfprintf(stdout, "<%sOpaqueType Tag=\"%s\" ",xmlnsprefix, mname);
+ free(mname);
+ size = H5Tget_size(type);
+ HDfprintf(stdout, "Size=\"%lu\"/>\n", (unsigned long)size);
+ indent -= COL;
+ indentation(indent);
+ HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
+ break;
- free(mname);
- free(t_fname);
- indent += COL;
- indentation(indent);
- printf("<%sDataType>\n",xmlnsprefix);
- indent += COL;
- xml_print_datatype(mtype,0);
- indent -= COL;
- indentation(indent);
- printf("</%sDataType>\n",xmlnsprefix);
- indent -= COL;
+ case H5T_COMPOUND:
+ /* recursively describe the components of a compound datatype */
- indentation(indent);
- printf("</%sField>\n",xmlnsprefix);
- }
- indent -= COL;
- indentation(indent);
- printf("</%sCompoundType>\n",xmlnsprefix);
- break;
+ /* type of a dataset */
+ nmembers = H5Tget_nmembers(type);
- case H5T_REFERENCE:
- indentation(indent);
- printf("<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- indentation(indent);
- /* Only Object references supported at this time */
- printf("<%sReferenceType>\n",xmlnsprefix);
- indentation(indent + COL);
- printf("<%sObjectReferenceType />\n",xmlnsprefix);
- indentation(indent);
- printf("</%sReferenceType>\n",xmlnsprefix);
- indent -= COL;
- indentation(indent);
- printf("</%sAtomicType>\n",xmlnsprefix);
- break;
+ indentation(indent);
+ HDfprintf(stdout, "<%sCompoundType>\n",xmlnsprefix);
- case H5T_ENUM:
- /* <hdf5:EnumType Nelems="ne" >
- list Name, values of enum
- */
- nmembs = H5Tget_nmembers(type);
- indentation(indent);
- printf("<%sAtomicType>\n",xmlnsprefix);
- indent += COL;
- indentation(indent);
- printf("<%sEnumType Nelems=\"%d\">\n",xmlnsprefix, nmembs);
- xml_print_enum(type);
- indentation(indent);
- printf("</%sEnumType>\n",xmlnsprefix);
- indent -= COL;
- indentation(indent);
- printf("</%sAtomicType>\n",xmlnsprefix);
- break;
+ /* List each member Field of the type */
+ /* <hdf5:Field FieldName="name" > */
+ /* <hdf5:DataType > */
+ indent += COL;
+ for (i = 0; i < nmembers; i++) {
+ char *t_fname;
- case H5T_VLEN:
+ mname = H5Tget_member_name(type, i);
+ mtype = H5Tget_member_type(type, i);
indentation(indent);
- printf("<%sVLType>\n",xmlnsprefix);
- super = H5Tget_super(type);
+ t_fname = xml_escape_the_name(mname);
+ HDfprintf(stdout, "<%sField FieldName=\"%s\">\n",xmlnsprefix, t_fname);
+
+ free(mname);
+ free(t_fname);
indent += COL;
indentation(indent);
- printf("<%sDataType>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sDataType>\n",xmlnsprefix);
indent += COL;
- xml_print_datatype(super,0);
+ xml_print_datatype(mtype,0);
indent -= COL;
indentation(indent);
- printf("</%sDataType>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sDataType>\n",xmlnsprefix);
indent -= COL;
+
indentation(indent);
- printf("</%sVLType>\n",xmlnsprefix);
- H5Tclose(super);
+ HDfprintf(stdout, "</%sField>\n",xmlnsprefix);
+ }
+ indent -= COL;
+ indentation(indent);
+ HDfprintf(stdout, "</%sCompoundType>\n",xmlnsprefix);
+ break;
- break;
+ case H5T_REFERENCE:
+ indentation(indent);
+ HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
+ indent += COL;
+ indentation(indent);
+ /* Only Object references supported at this time */
+ HDfprintf(stdout, "<%sReferenceType>\n",xmlnsprefix);
+ indentation(indent + COL);
+ HDfprintf(stdout, "<%sObjectReferenceType />\n",xmlnsprefix);
+ indentation(indent);
+ HDfprintf(stdout, "</%sReferenceType>\n",xmlnsprefix);
+ indent -= COL;
+ indentation(indent);
+ HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
+ break;
- case H5T_ARRAY:
- /* Get array base type */
- super = H5Tget_super(type);
+ case H5T_ENUM:
+ /* <hdf5:EnumType Nelems="ne" > list Name, values of enum */
+ nmembs = H5Tget_nmembers(type);
+ indentation(indent);
+ HDfprintf(stdout, "<%sAtomicType>\n",xmlnsprefix);
+ indent += COL;
+ indentation(indent);
+ HDfprintf(stdout, "<%sEnumType Nelems=\"%d\">\n",xmlnsprefix, nmembs);
+ xml_print_enum(type);
+ indentation(indent);
+ HDfprintf(stdout, "</%sEnumType>\n",xmlnsprefix);
+ indent -= COL;
+ indentation(indent);
+ HDfprintf(stdout, "</%sAtomicType>\n",xmlnsprefix);
+ break;
- /* Print lead-in */
- indentation(indent);
- printf("<%sArrayType Ndims=\"",xmlnsprefix);
- ndims = H5Tget_array_ndims(type);
- printf("%u\">\n", ndims);
+ case H5T_VLEN:
+ indentation(indent);
+ HDfprintf(stdout, "<%sVLType>\n",xmlnsprefix);
+ super = H5Tget_super(type);
+ indent += COL;
+ indentation(indent);
+ HDfprintf(stdout, "<%sDataType>\n",xmlnsprefix);
+ indent += COL;
+ xml_print_datatype(super,0);
+ indent -= COL;
+ indentation(indent);
+ HDfprintf(stdout, "</%sDataType>\n",xmlnsprefix);
+ indent -= COL;
+ indentation(indent);
+ HDfprintf(stdout, "</%sVLType>\n",xmlnsprefix);
+ H5Tclose(super);
- /* Get array information */
- H5Tget_array_dims2(type, dims);
+ break;
- /* list of dimensions */
- indent += COL;
- for (i = 0; i < ndims; i++) {
- indentation(indent);
- printf("<%sArrayDimension DimSize=\"%u\"/>\n",
- xmlnsprefix,
- (int) dims[i]);
- }
- indent -= COL;
+ case H5T_ARRAY:
+ /* Get array base type */
+ super = H5Tget_super(type);
- indent += COL;
- indentation(indent);
- printf("<%sDataType>\n",xmlnsprefix);
- indent += COL;
- xml_print_datatype(super,0);
- indent -= COL;
- indentation(indent);
- printf("</%sDataType>\n",xmlnsprefix);
- indent -= COL;
+ /* Print lead-in */
+ indentation(indent);
+ HDfprintf(stdout, "<%sArrayType Ndims=\"",xmlnsprefix);
+ ndims = H5Tget_array_ndims(type);
+ HDfprintf(stdout, "%u\">\n", ndims);
+
+ /* Get array information */
+ H5Tget_array_dims2(type, dims);
+
+ /* list of dimensions */
+ indent += COL;
+ for (i = 0; i < ndims; i++) {
indentation(indent);
- printf("</%sArrayType>\n",xmlnsprefix);
- /* Close array base type */
- H5Tclose(super);
- break;
+ HDfprintf(stdout, "<%sArrayDimension DimSize=\"%u\"/>\n", xmlnsprefix, (int) dims[i]);
+ }
+ indent -= COL;
- default:
- printf("<!-- unknown datatype -->");
- h5tools_setstatus(EXIT_FAILURE);
- break;
+ indent += COL;
+ indentation(indent);
+ HDfprintf(stdout, "<%sDataType>\n",xmlnsprefix);
+ indent += COL;
+ xml_print_datatype(super,0);
+ indent -= COL;
+ indentation(indent);
+ HDfprintf(stdout, "</%sDataType>\n",xmlnsprefix);
+ indent -= COL;
+ indentation(indent);
+ HDfprintf(stdout, "</%sArrayType>\n",xmlnsprefix);
+ /* Close array base type */
+ H5Tclose(super);
+ break;
+
+ default:
+ HDfprintf(stdout, "<!-- unknown datatype -->");
+ h5tools_setstatus(EXIT_FAILURE);
+ break;
}
} /* end else */
}
@@ -5589,7 +5619,6 @@ xml_print_datatype(hid_t type, unsigned in_group)
static void
xml_dump_datatype(hid_t type)
{
-
indent += COL;
indentation(indent);
@@ -5604,7 +5633,7 @@ xml_dump_datatype(hid_t type)
if(found_obj) {
/* Shared datatype, must be entered as an object */
/* These 2 cases are the same now, but may change */
- char * dtxid = (char *)malloc(100);
+ char *dtxid = (char *)malloc(100);
xml_name_to_XID(found_obj->objname, dtxid, 100, 1);
if (!found_obj->recorded) {
@@ -5613,29 +5642,31 @@ xml_dump_datatype(hid_t type)
practice:
use it's object ref as its name
*/
- printf("<%sNamedDataTypePtr OBJ-XID=\"%s\"/>\n",
+ HDfprintf(stdout, "<%sNamedDataTypePtr OBJ-XID=\"%s\"/>\n",
xmlnsprefix, dtxid);
- } else {
+ }
+ else {
/* pointer to a named datatype already in XML */
char *t_objname = xml_escape_the_name(found_obj->objname);
- printf("<%sNamedDataTypePtr OBJ-XID=\"%s\" H5Path=\"%s\" />\n",
+ HDfprintf(stdout, "<%sNamedDataTypePtr OBJ-XID=\"%s\" H5Path=\"%s\" />\n",
xmlnsprefix, dtxid, t_objname);
free(t_objname);
}
free(dtxid);
- } else {
- printf("<!-- h5dump error: unknown committed type. -->\n");
+ }
+ else {
+ HDfprintf(stdout, "<!-- h5dump error: unknown committed type. -->\n");
}
indent -= COL;
}
else {
- printf("<%sDataType>\n", xmlnsprefix);
+ HDfprintf(stdout, "<%sDataType>\n", xmlnsprefix);
indent += COL;
xml_print_datatype(type, 0);
indent -= COL;
indentation(indent);
- printf("</%sDataType>\n", xmlnsprefix);
+ HDfprintf(stdout, "</%sDataType>\n", xmlnsprefix);
indent -= COL;
}
}
@@ -5656,64 +5687,63 @@ xml_dump_datatype(hid_t type)
static void
xml_dump_dataspace(hid_t space)
{
- hsize_t size[H5DUMP_MAX_RANK];
- hsize_t maxsize[H5DUMP_MAX_RANK];
- int ndims =
- H5Sget_simple_extent_dims(space, size, maxsize);
- H5S_class_t space_type = H5Sget_simple_extent_type(space);
- int i;
+ hsize_t size[H5DUMP_MAX_RANK];
+ hsize_t maxsize[H5DUMP_MAX_RANK];
+ int i;
+
+ int ndims = H5Sget_simple_extent_dims(space, size, maxsize);
+ H5S_class_t space_type = H5Sget_simple_extent_type(space);
indentation(indent + COL);
- printf("<%sDataspace>\n", xmlnsprefix);
+ HDfprintf(stdout, "<%sDataspace>\n", xmlnsprefix);
indentation(indent + COL + COL);
switch (space_type) {
- case H5S_SCALAR:
- /* scalar dataspace (just a tag, no XML attrs. defined */
- printf("<%sScalarDataspace />\n",xmlnsprefix);
- break;
+ case H5S_SCALAR:
+ /* scalar dataspace (just a tag, no XML attrs. defined */
+ HDfprintf(stdout, "<%sScalarDataspace />\n",xmlnsprefix);
+ break;
- case H5S_SIMPLE:
- /* simple dataspace */
- /* <hdf5:SimpleDataspace Ndims="nd"> */
- printf("<%sSimpleDataspace Ndims=\"%d\">\n",xmlnsprefix, ndims);
+ case H5S_SIMPLE:
+ /* simple dataspace */
+ /* <hdf5:SimpleDataspace Ndims="nd"> */
+ HDfprintf(stdout, "<%sSimpleDataspace Ndims=\"%d\">\n",xmlnsprefix, ndims);
- /* print the <hdf5:Dimension> elements */
- for (i = 0; i < ndims; i++) {
- indentation(indent + COL + COL + COL);
- if (maxsize[i] == H5S_UNLIMITED) {
- HDfprintf(stdout,
- "<%sDimension DimSize=\"%Hu\" MaxDimSize=\"UNLIMITED\"/>\n",
- xmlnsprefix,size[i]);
- } else if (maxsize[i] == (hsize_t) 0) {
- HDfprintf(stdout,
- "<%sDimension DimSize=\"%Hu\" MaxDimSize=\"%Hu\"/>\n",
- xmlnsprefix,size[i], size[i]);
- } else {
- HDfprintf(stdout,
- "<%sDimension DimSize=\"%Hu\" MaxDimSize=\"%Hu\"/>\n",
- xmlnsprefix, size[i], maxsize[i]);
- }
+ /* print the <hdf5:Dimension> elements */
+ for (i = 0; i < ndims; i++) {
+ indentation(indent + COL + COL + COL);
+ if (maxsize[i] == H5S_UNLIMITED) {
+ HDfprintf(stdout, "<%sDimension DimSize=\"%Hu\" MaxDimSize=\"UNLIMITED\"/>\n",
+ xmlnsprefix,size[i]);
+ }
+ else if (maxsize[i] == (hsize_t) 0) {
+ HDfprintf(stdout, "<%sDimension DimSize=\"%Hu\" MaxDimSize=\"%Hu\"/>\n",
+ xmlnsprefix,size[i], size[i]);
+ }
+ else {
+ HDfprintf(stdout, "<%sDimension DimSize=\"%Hu\" MaxDimSize=\"%Hu\"/>\n",
+ xmlnsprefix, size[i], maxsize[i]);
}
- indentation(indent + COL + COL);
- printf("</%sSimpleDataspace>\n", xmlnsprefix );
- break;
+ }
+ indentation(indent + COL + COL);
+ HDfprintf(stdout, "</%sSimpleDataspace>\n", xmlnsprefix );
+ break;
#ifdef TMP
/* Commented out: wait until the schema is updated first */
- case H5S_NULL:
- /* null dataspace (just a tag, no XML attrs. defined */
- printf("<%sNullDataspace />\n",xmlnsprefix);
- break;
+ case H5S_NULL:
+ /* null dataspace (just a tag, no XML attrs. defined */
+ HDfprintf(stdout, "<%sNullDataspace />\n",xmlnsprefix);
+ break;
#endif /* TMP */
- case H5S_NO_CLASS:
- default:
- printf("<!-- unknown dataspace -->\n");
+ case H5S_NO_CLASS:
+ default:
+ HDfprintf(stdout, "<!-- unknown dataspace -->\n");
}
indentation(indent + COL);
- printf("</%sDataspace>\n", xmlnsprefix);
+ HDfprintf(stdout, "</%sDataspace>\n", xmlnsprefix);
}
/*-------------------------------------------------------------------------
@@ -5734,17 +5764,20 @@ xml_dump_dataspace(hid_t space)
static void
xml_dump_data(hid_t obj_id, int obj_data, struct subset_t UNUSED * sset, int UNUSED pindex)
{
- h5tool_format_t *outputformat = &xml_dataformat;
- int status = -1;
- void *buf;
- hid_t space, type, p_type;
- int ndims, i;
- hsize_t size[64], nelmts = 1;
- int depth;
- int stdindent = COL; /* should be 3 */
-
- if (fp_format)
- {
+ hid_t space;
+ hid_t type;
+ hid_t p_type;
+ hsize_t size[64];
+ hsize_t nelmts = 1;
+ int ndims;
+ int i;
+ int depth;
+ int status = -1;
+ int stdindent = COL; /* should be 3 */
+ h5tool_format_t *outputformat = &xml_dataformat;
+ void *buf = NULL;
+
+ if (fp_format) {
outputformat->fmt_double = fp_format;
outputformat->fmt_float = fp_format;
}
@@ -5767,19 +5800,22 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t UNUSED * sset, int UNU
/* Print all the values. */
indentation(indent);
- printf("<%sData>\n", xmlnsprefix);
+ HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
indentation(indent + COL);
- printf("<%sDataFromFile>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sDataFromFile>\n",xmlnsprefix);
if (obj_data == DATASET_DATA) {
type = H5Dget_type(obj_id);
if (H5Tget_class(type) == H5T_REFERENCE) {
status = xml_print_refs(obj_id, DATASET_DATA);
- } else if (H5Tget_class(type) == H5T_STRING) {
+ }
+ else if (H5Tget_class(type) == H5T_STRING) {
status = xml_print_strs(obj_id, DATASET_DATA);
- } else {
+ }
+ else {
status = h5tools_dump_dset(stdout, outputformat, obj_id, -1, NULL, depth);
}
- } else {
+ }
+ else {
/* Attribute data */
type = H5Aget_type(obj_id);
@@ -5791,16 +5827,20 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t UNUSED * sset, int UNU
*/
status = xml_print_refs(obj_id, ATTRIBUTE_DATA);
H5Tclose(type);
- } else if (H5Tget_class(type) == H5T_STRING) {
+ }
+ else if (H5Tget_class(type) == H5T_STRING) {
status = xml_print_strs(obj_id, ATTRIBUTE_DATA);
- } else { /* all other data */
+ }
+ else { /* all other data */
/* VL data special information */
unsigned int vl_data = 0; /* contains VL datatypes */
p_type = h5tools_get_native_type(type);
/* Check if we have VL data in the dataset's datatype */
- if (h5tools_detect_vlen(p_type) == TRUE)
+ if (h5tools_detect_vlen_str(p_type) == TRUE)
+ vl_data = TRUE;
+ if (H5Tdetect_class(p_type, H5T_VLEN) == TRUE)
vl_data = TRUE;
H5Tclose(type);
@@ -5816,8 +5856,7 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t UNUSED * sset, int UNU
assert(buf);
if (H5Aread(obj_id, p_type, buf) >= 0)
- status = h5tools_dump_mem(stdout, outputformat, obj_id,
- p_type, space, buf, depth);
+ status = h5tools_dump_mem(stdout, outputformat, obj_id, p_type, space, buf, depth);
/* Reclaim any VL memory, if necessary */
if (vl_data)
@@ -5832,14 +5871,14 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t UNUSED * sset, int UNU
if (status == FAIL) {
indentation(indent + COL);
- printf("Unable to print data.\n");
+ HDfprintf(stdout, "Unable to print data.\n");
status = 1;
}
indentation(indent + COL);
- printf("</%sDataFromFile>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sDataFromFile>\n",xmlnsprefix);
indentation(indent);
- printf("</%sData>\n", xmlnsprefix);
+ HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
indent -= COL;
}
@@ -5860,12 +5899,15 @@ static herr_t
xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t UNUSED *info,
void UNUSED * op_data)
{
- hid_t attr_id, type, space;
+ hid_t attr_id;
+ hid_t type;
+ hid_t space;
H5S_class_t space_type;
- char *t_aname = xml_escape_the_name(attr_name);
+
+ char *t_aname = xml_escape_the_name(attr_name);
indentation(indent);
- printf("<%sAttribute Name=\"%s\">\n",xmlnsprefix, t_aname);
+ HDfprintf(stdout, "<%sAttribute Name=\"%s\">\n", xmlnsprefix, t_aname);
free(t_aname);
if ((attr_id = H5Aopen(attr, attr_name, H5P_DEFAULT)) >= 0) {
@@ -5876,95 +5918,98 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t UNUSED *info,
dump_function_table->dump_dataspace_function(space);
dump_function_table->dump_datatype_function(type);
- if (display_attr_data && space_type!=H5S_NULL) {
+ if (display_attr_data && space_type != H5S_NULL) {
switch (H5Tget_class(type)) {
- case H5T_INTEGER:
- case H5T_FLOAT:
- case H5T_STRING:
- case H5T_BITFIELD:
- case H5T_OPAQUE:
- case H5T_ENUM:
- case H5T_ARRAY:
- dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0);
- break;
+ case H5T_INTEGER:
+ case H5T_FLOAT:
+ case H5T_STRING:
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ case H5T_ENUM:
+ case H5T_ARRAY:
+ dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0);
+ break;
- case H5T_TIME:
- indent += COL;
- indentation(indent);
- printf("<%sData>\n",xmlnsprefix);
- indentation(indent);
- printf("<!-- Time data not yet implemented. -->\n");
- indentation(indent);
- printf("<%sNoData/>\n",xmlnsprefix);
- indentation(indent);
- printf("<hdf5:Data>\n");
- printf("</%sData>\n",xmlnsprefix);
- indent -= COL;
- break;
+ case H5T_TIME:
+ indent += COL;
+ indentation(indent);
+ HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
+ indentation(indent);
+ HDfprintf(stdout, "<!-- Time data not yet implemented. -->\n");
+ indentation(indent);
+ HDfprintf(stdout, "<%sNoData/>\n", xmlnsprefix);
+ indentation(indent);
+ HDfprintf(stdout, "<hdf5:Data>\n");
+ HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
+ indent -= COL;
+ break;
- case H5T_COMPOUND:
- indentation(indent);
- printf("<!-- Note: format of compound data not specified -->\n");
- dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0);
- break;
+ case H5T_COMPOUND:
+ indentation(indent);
+ HDfprintf(stdout, "<!-- Note: format of compound data not specified -->\n");
+ dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0);
+ break;
- case H5T_REFERENCE:
- indentation(indent);
- printf("<%sData>\n",xmlnsprefix);
+ case H5T_REFERENCE:
+ indentation(indent);
+ HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
+ indentation(indent);
+ if (!H5Tequal(type, H5T_STD_REF_OBJ)) {
+ HDfprintf(stdout, "<!-- Note: Region references not supported -->\n");
indentation(indent);
- if (!H5Tequal(type, H5T_STD_REF_OBJ)) {
- printf("<!-- Note: Region references not supported -->\n");
- indentation(indent);
- printf("<%sNoData />\n",xmlnsprefix);
- } else {
- printf("<%sDataFromFile>\n",xmlnsprefix);
- xml_print_refs(attr_id, ATTRIBUTE_DATA);
- indentation(indent);
- printf("</%sDataFromFile>\n",xmlnsprefix);
- }
+ HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
+ }
+ else {
+ HDfprintf(stdout, "<%sDataFromFile>\n", xmlnsprefix);
+ xml_print_refs(attr_id, ATTRIBUTE_DATA);
indentation(indent);
- printf("</%sData>\n",xmlnsprefix);
- break;
+ HDfprintf(stdout, "</%sDataFromFile>\n", xmlnsprefix);
+ }
+ indentation(indent);
+ HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
+ break;
- case H5T_VLEN:
- printf("<!-- Note: format of VL data not specified -->\n");
- dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0);
- break;
- default:
- indentation(indent);
- printf("<%sData>\n",xmlnsprefix);
- indentation(indent);
- printf("<!-- Unknown datatype: %d -->\n", H5Tget_class(type));
- indentation(indent);
- printf("<%sNoData/>\n",xmlnsprefix);
- indentation(indent);
- printf("</%sData>\n",xmlnsprefix);
- break;
+ case H5T_VLEN:
+ HDfprintf(stdout, "<!-- Note: format of VL data not specified -->\n");
+ dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0);
+ break;
+ default:
+ indentation(indent);
+ HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
+ indentation(indent);
+ HDfprintf(stdout, "<!-- Unknown datatype: %d -->\n", H5Tget_class(type));
+ indentation(indent);
+ HDfprintf(stdout, "<%sNoData/>\n", xmlnsprefix);
+ indentation(indent);
+ HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
+ break;
}
- } else {
+ }
+ else {
/* The case of an attribute never yet written ??
- * Or dataspace is H5S_NULL. */
+ * Or dataspace is H5S_NULL. */
indentation(indent + COL);
- printf("<%sData>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
indentation(indent + COL + COL);
- printf("<%sNoData/>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sNoData/>\n", xmlnsprefix);
indentation(indent + COL);
- printf("</%sData>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
}
H5Tclose(type);
H5Sclose(space);
H5Aclose(attr_id);
indentation(indent);
- printf("</%sAttribute>\n", xmlnsprefix );
+ HDfprintf(stdout, "</%sAttribute>\n", xmlnsprefix);
return SUCCEED;
- } else {
+ }
+ else {
/* ?? failed */
indentation(indent + COL);
- printf("<!-- h5dump error: unable to open attribute. -->\n");
+ HDfprintf(stdout, "<!-- h5dump error: unable to open attribute. -->\n");
indentation(indent);
- printf("</%sAttribute>\n", xmlnsprefix );
+ HDfprintf(stdout, "</%sAttribute>\n", xmlnsprefix);
h5tools_setstatus(EXIT_FAILURE);
return FAIL;
}
@@ -5986,12 +6031,12 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t UNUSED *info,
static void
xml_dump_named_datatype(hid_t type, const char *name)
{
- char *tmp;
- char * dtxid;
- char * parentxid;
- char *t_tmp;
- char *t_prefix;
- char *t_name;
+ char *tmp;
+ char *dtxid;
+ char *parentxid;
+ char *t_tmp;
+ char *t_prefix;
+ char *t_name;
tmp = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
HDstrcpy(tmp, prefix);
@@ -6016,15 +6061,16 @@ xml_dump_named_datatype(hid_t type, const char *name)
in the event we want to do something else in
the future.
*/
- printf("<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" "
+ HDfprintf(stdout, "<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" "
"Parents=\"%s\" H5ParentPaths=\"%s\">\n",
xmlnsprefix,
name, dtxid,
parentxid, HDstrcmp(prefix,"") ? t_prefix : "/");
- } else {
+ }
+ else {
H5O_info_t oinfo; /* Object info */
- printf("<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" "
+ HDfprintf(stdout, "<%sNamedDataType Name=\"%s\" OBJ-XID=\"%s\" "
"H5Path=\"%s\" Parents=\"%s\" H5ParentPaths=\"%s\">\n",
xmlnsprefix,
t_name, dtxid,
@@ -6040,11 +6086,11 @@ xml_dump_named_datatype(hid_t type, const char *name)
if (found_obj == NULL) {
indentation(indent);
- error_msg("internal error (file %s:line %d)\n",
- __FILE__, __LINE__);
+ error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
h5tools_setstatus(EXIT_FAILURE);
goto done;
- } else if(found_obj->displayed) {
+ }
+ else if(found_obj->displayed) {
/* We have already printed this named datatype, print it as a
* NamedDatatypePtr
*/
@@ -6053,31 +6099,31 @@ xml_dump_named_datatype(hid_t type, const char *name)
indentation(indent + COL);
xml_name_to_XID(found_obj->objname, pointerxid, sizeof(pointerxid), 1);
- printf("<%sNamedDatatypePtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n",
- xmlnsprefix, pointerxid, t_objname);
+ HDfprintf(stdout, "<%sNamedDatatypePtr OBJ-XID=\"%s\" H5Path=\"%s\"/>\n", xmlnsprefix, pointerxid, t_objname);
indentation(indent);
- printf("</%sNamedDataType>\n", xmlnsprefix);
+ HDfprintf(stdout, "</%sNamedDataType>\n", xmlnsprefix);
HDfree(t_objname);
goto done;
- } else
+ }
+ else
found_obj->displayed = TRUE;
}
}
indent += COL;
indentation(indent);
- printf("<%sDataType>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sDataType>\n",xmlnsprefix);
indent += COL;
xml_print_datatype(type,1);
indent -= COL;
indentation(indent);
- printf("</%sDataType>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sDataType>\n",xmlnsprefix);
indent -= COL;
indentation(indent);
- printf("</%sNamedDataType>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sNamedDataType>\n",xmlnsprefix);
done:
HDfree(dtxid);
@@ -6107,34 +6153,32 @@ static void
xml_dump_group(hid_t gid, const char *name)
{
H5O_info_t oinfo;
- char *cp;
+ hid_t gcpl_id;
hid_t dset, type;
- char type_name[1024], *tmp = NULL;
- char *par = NULL;
- int isRoot = 0;
- char *t_objname;
- char *par_name;
unsigned crt_order_flags;
unsigned attr_crt_order_flags;
- hid_t gcpl_id;
+ int isRoot = 0;
+ char type_name[1024];
+ char *t_objname = NULL;
+ char *par_name = NULL;
+ char *cp = NULL;
+ char *tmp = NULL;
+ char *par = NULL;
- if ((gcpl_id = H5Gget_create_plist(gid)) < 0)
- {
+ if ((gcpl_id = H5Gget_create_plist(gid)) < 0) {
error_msg("error in getting group creation property list ID\n");
h5tools_setstatus(EXIT_FAILURE);
}
/* query the group creation properties for attributes */
- if (H5Pget_attr_creation_order(gcpl_id, &attr_crt_order_flags) < 0)
- {
+ if (H5Pget_attr_creation_order(gcpl_id, &attr_crt_order_flags) < 0) {
error_msg("error in getting group creation properties\n");
h5tools_setstatus(EXIT_FAILURE);
}
/* query the group creation properties */
- if(H5Pget_link_creation_order(gcpl_id, &crt_order_flags) < 0)
- {
+ if(H5Pget_link_creation_order(gcpl_id, &crt_order_flags) < 0) {
error_msg("error in getting group creation properties\n");
h5tools_setstatus(EXIT_FAILURE);
}
@@ -6147,7 +6191,8 @@ xml_dump_group(hid_t gid, const char *name)
if(HDstrcmp(name, "/") == 0) {
isRoot = 1;
tmp = HDstrdup("/");
- } else {
+ }
+ else {
tmp = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
HDstrcpy(tmp, prefix);
par = HDstrdup(tmp);
@@ -6173,10 +6218,10 @@ xml_dump_group(hid_t gid, const char *name)
if (found_obj == NULL) {
indentation(indent);
- error_msg("internal error (file %s:line %d)\n",
- __FILE__, __LINE__);
+ error_msg("internal error (file %s:line %d)\n", __FILE__, __LINE__);
h5tools_setstatus(EXIT_FAILURE);
- } else {
+ }
+ else {
char *t_name = xml_escape_the_name(name);
char *grpxid = (char *)malloc(100);
char *parentxid = (char *)malloc(100);
@@ -6188,14 +6233,15 @@ xml_dump_group(hid_t gid, const char *name)
if(isRoot) {
/* probably can't happen! */
xml_name_to_XID("/", grpxid, 100, 1);
- printf("<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">\n",
+ HDfprintf(stdout, "<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">\n",
xmlnsprefix, grpxid, "/");
- } else {
+ }
+ else {
t_objname = xml_escape_the_name(found_obj->objname);
par_name = xml_escape_the_name(par);
xml_name_to_XID(tmp, grpxid, 100, 1);
xml_name_to_XID(par, parentxid, 100, 1);
- printf("<%sGroup Name=\"%s\" OBJ-XID=\"%s-%d\" H5Path=\"%s\" "
+ HDfprintf(stdout, "<%sGroup Name=\"%s\" OBJ-XID=\"%s-%d\" H5Path=\"%s\" "
"Parents=\"%s\" H5ParentPaths=\"%s\">\n",
xmlnsprefix,t_name, grpxid, get_next_xid(),
t_objname, parentxid, par_name);
@@ -6207,7 +6253,7 @@ xml_dump_group(hid_t gid, const char *name)
par_name = xml_escape_the_name(par);
xml_name_to_XID(found_obj->objname, ptrstr, 100, 1);
xml_name_to_XID(par, parentxid, 100, 1);
- printf("<%sGroupPtr OBJ-XID=\"%s\" H5Path=\"%s\" "
+ HDfprintf(stdout, "<%sGroupPtr OBJ-XID=\"%s\" H5Path=\"%s\" "
"Parents=\"%s\" H5ParentPaths=\"%s\" />\n",
xmlnsprefix,
ptrstr, t_objname, parentxid, par_name);
@@ -6215,20 +6261,22 @@ xml_dump_group(hid_t gid, const char *name)
free(par_name);
}
free(ptrstr);
- } else {
+ }
+ else {
/* first time this group has been seen -- describe it */
if(isRoot) {
xml_name_to_XID("/", grpxid, 100, 1);
- printf("<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">\n",
+ HDfprintf(stdout, "<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">\n",
xmlnsprefix, grpxid, "/");
- } else {
+ }
+ else {
char *t_tmp = xml_escape_the_name(tmp);
par_name = xml_escape_the_name(par);
xml_name_to_XID(tmp, grpxid, 100, 1);
xml_name_to_XID(par, parentxid, 100, 1);
- printf("<%sGroup Name=\"%s\" OBJ-XID=\"%s\" H5Path=\"%s\" "
+ HDfprintf(stdout, "<%sGroup Name=\"%s\" OBJ-XID=\"%s\" H5Path=\"%s\" "
"Parents=\"%s\" H5ParentPaths=\"%s\" >\n",
xmlnsprefix,t_name, grpxid, t_tmp, parentxid, par_name);
free(t_tmp);
@@ -6280,7 +6328,8 @@ xml_dump_group(hid_t gid, const char *name)
free(grpxid);
free(parentxid);
}
- } else {
+ }
+ else {
/* only link -- must be first time! */
char *t_name = xml_escape_the_name(name);
@@ -6289,18 +6338,17 @@ xml_dump_group(hid_t gid, const char *name)
if(isRoot) {
xml_name_to_XID("/", grpxid, 100, 1);
- printf("<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">\n",
- xmlnsprefix, grpxid, "/");
- } else {
+ HDfprintf(stdout, "<%sRootGroup OBJ-XID=\"%s\" H5Path=\"%s\">\n", xmlnsprefix, grpxid, "/");
+ }
+ else {
char *t_tmp = xml_escape_the_name(tmp);
par_name = xml_escape_the_name(par);
xml_name_to_XID(tmp, grpxid, 100, 1);
xml_name_to_XID(par, parentxid, 100, 1);
- printf("<%sGroup Name=\"%s\" OBJ-XID=\"%s\" H5Path=\"%s\" "
+ HDfprintf(stdout, "<%sGroup Name=\"%s\" OBJ-XID=\"%s\" H5Path=\"%s\" "
"Parents=\"%s\" H5ParentPaths=\"%s\" >\n",
- xmlnsprefix, t_name, grpxid, t_tmp,
- parentxid, par_name);
+ xmlnsprefix, t_name, grpxid, t_tmp, parentxid, par_name);
free(t_tmp);
free(par_name);
}
@@ -6342,7 +6390,7 @@ xml_dump_group(hid_t gid, const char *name)
/* iterate through all the links */
- if( (sort_by == H5_INDEX_CRT_ORDER) && (crt_order_flags & H5P_CRT_ORDER_TRACKED))
+ if((sort_by == H5_INDEX_CRT_ORDER) && (crt_order_flags & H5P_CRT_ORDER_TRACKED))
H5Literate(gid, sort_by, sort_order, NULL, dump_all_cb, NULL);
else
H5Literate(gid, H5_INDEX_NAME, sort_order, NULL, dump_all_cb, NULL);
@@ -6351,9 +6399,12 @@ xml_dump_group(hid_t gid, const char *name)
indent -= COL;
indentation(indent);
if(isRoot)
- printf("</%sRootGroup>\n", xmlnsprefix);
+ HDfprintf(stdout, "</%sRootGroup>\n", xmlnsprefix);
else
- printf("</%sGroup>\n" , xmlnsprefix);
+ HDfprintf(stdout, "</%sGroup>\n" , xmlnsprefix);
+ if(par)
+ free(par);
+ if(tmp)
free(tmp);
}
@@ -6373,13 +6424,14 @@ xml_dump_group(hid_t gid, const char *name)
static int
xml_print_refs(hid_t did, int source)
{
- herr_t e;
- hid_t type, space;
- char *buf = NULL;
+ herr_t e;
+ hid_t type;
+ hid_t space;
+ hssize_t ssiz;
+ hsize_t i;
+ size_t tsiz;
hobj_ref_t *refbuf = NULL;
- hssize_t ssiz;
- hsize_t i;
- size_t tsiz;
+ char *buf = NULL;
if (source == DATASET_DATA) {
type = H5Dget_type(did);
@@ -6437,18 +6489,16 @@ xml_print_refs(hid_t did, int source)
refbuf = (hobj_ref_t *) buf;
for (i = 0; i < ssiz; i++) {
- const char *path;
-
- path = lookup_ref_path(*refbuf);
+ const char *path = lookup_ref_path(*refbuf);
indentation(indent + COL);
if (!path) {
- printf("\"%s\"\n", "NULL");
+ HDfprintf(stdout, "\"%s\"\n", "NULL");
}
else {
char *t_path = xml_escape_the_string(path, -1);
- printf("\"%s\"\n", t_path);
+ HDfprintf(stdout, "\"%s\"\n", t_path);
free(t_path);
}
@@ -6487,16 +6537,17 @@ error:
static int
xml_print_strs(hid_t did, int source)
{
- herr_t e;
- hid_t type, space;
- void *buf = NULL;
- char *bp;
- char *onestring = NULL;
- hssize_t ssiz;
- size_t tsiz;
- size_t str_size = 0;
- size_t i;
- htri_t is_vlstr;
+ herr_t e;
+ hid_t type;
+ hid_t space;
+ hssize_t ssiz;
+ htri_t is_vlstr = FALSE;
+ size_t tsiz;
+ size_t i;
+ size_t str_size = 0;
+ char *bp = NULL;
+ char *onestring = NULL;
+ void *buf = NULL;
if (source == DATASET_DATA) {
type = H5Dget_type(did);
@@ -6513,7 +6564,7 @@ xml_print_strs(hid_t did, int source)
goto error;
}
/* Check if we have VL data in the dataset's datatype */
- is_vlstr = (TRUE == H5Tis_variable_str(type));
+ is_vlstr = H5Tis_variable_str(type);
if (source == DATASET_DATA) {
space = H5Dget_space(did);
@@ -6565,12 +6616,12 @@ xml_print_strs(hid_t did, int source)
indentation(indent + COL);
if (!onestring) {
- printf("NULL\n");
+ HDfprintf(stdout, "NULL\n");
}
else {
char *t_onestring = xml_escape_the_string(onestring, (int) str_size);
if (t_onestring) {
- printf("\"%s\"\n", t_onestring);
+ HDfprintf(stdout, "\"%s\"\n", t_onestring);
free(t_onestring);
}
}
@@ -6619,74 +6670,81 @@ error:
static void
check_filters(hid_t dcpl)
{
- int nfilt;
- int i;
- H5Z_filter_t filter;
- char namebuf[120];
- size_t cd_nelmts = 20;
- unsigned int cd_values[20];
- unsigned int flags;
+ int nfilt;
+ int i;
+ H5Z_filter_t filter;
+ char namebuf[120];
+ size_t cd_nelmts = 20;
+ unsigned int cd_values[20];
+ unsigned int flags;
nfilt = H5Pget_nfilters(dcpl);
if (nfilt <= 0)
return;
for (i = 0; i < nfilt; i++) {
- filter = H5Pget_filter2(dcpl, (unsigned)i, &flags,
- (size_t *) &cd_nelmts,
- cd_values, 120, namebuf, NULL);
+ filter = H5Pget_filter2(dcpl, (unsigned) i, &flags, (size_t *) &cd_nelmts, cd_values, 120, namebuf, NULL);
if (filter == H5Z_FILTER_DEFLATE) {
indentation(indent + COL);
- printf("<%sDeflate Level=\"",xmlnsprefix);
+ HDfprintf(stdout, "<%sDeflate Level=\"", xmlnsprefix);
if (cd_nelmts < 1) {
/* not sure what this means? */
- printf("6");
- } else {
- printf("%d",cd_values[0]);
+ HDfprintf(stdout, "6");
+ }
+ else {
+ HDfprintf(stdout, "%d", cd_values[0]);
}
- printf("\"/>\n");
- } else if (filter == H5Z_FILTER_FLETCHER32) {
+ HDfprintf(stdout, "\"/>\n");
+ }
+ else if (filter == H5Z_FILTER_FLETCHER32) {
indentation(indent + COL);
- printf("<%sFletcher32 />",xmlnsprefix);
- } else if (filter == H5Z_FILTER_SHUFFLE) {
+ HDfprintf(stdout, "<%sFletcher32 />", xmlnsprefix);
+ }
+ else if (filter == H5Z_FILTER_SHUFFLE) {
indentation(indent + COL);
- printf("<%sShuffle />",xmlnsprefix);
- } else if (filter == H5Z_FILTER_SZIP) {
+ HDfprintf(stdout, "<%sShuffle />", xmlnsprefix);
+ }
+ else if (filter == H5Z_FILTER_SZIP) {
indentation(indent + COL);
- printf("<%sSZIP ",xmlnsprefix);
+ HDfprintf(stdout, "<%sSZIP ", xmlnsprefix);
if (cd_nelmts < 2) {
/* no pixels ? */
- printf("Pixels_per_block=\"-1\" ");
- } else {
- printf("Pixels_per_block=\"%d\" ",cd_values[1]);
+ HDfprintf(stdout, "Pixels_per_block=\"-1\" ");
+ }
+ else {
+ HDfprintf(stdout, "Pixels_per_block=\"%d\" ", cd_values[1]);
}
/* analyse the options mask */
if (cd_values[0] & H5_SZIP_CHIP_OPTION_MASK) {
- printf("Mode =\"Hardware\" ");
- } else if (cd_values[0] & H5_SZIP_ALLOW_K13_OPTION_MASK) {
- printf("Mode =\"K13\" ");
+ HDfprintf(stdout, "Mode =\"Hardware\" ");
}
- printf("Coding=\"");
+ else if (cd_values[0] & H5_SZIP_ALLOW_K13_OPTION_MASK) {
+ HDfprintf(stdout, "Mode =\"K13\" ");
+ }
+ HDfprintf(stdout, "Coding=\"");
if (cd_values[0] & H5_SZIP_EC_OPTION_MASK) {
- printf("Entropy");
- } else if (cd_values[0] & H5_SZIP_NN_OPTION_MASK) {
- printf("NN");
+ HDfprintf(stdout, "Entropy");
+ }
+ else if (cd_values[0] & H5_SZIP_NN_OPTION_MASK) {
+ HDfprintf(stdout, "NN");
}
- printf("\" ");
+ HDfprintf(stdout, "\" ");
- printf("ByteOrder=\"");
+ HDfprintf(stdout, "ByteOrder=\"");
if (cd_values[0] & H5_SZIP_LSB_OPTION_MASK) {
- printf("LSB");
- } else if (cd_values[0] & H5_SZIP_MSB_OPTION_MASK) {
- printf("MSB");
+ HDfprintf(stdout, "LSB");
}
- printf("\" ");
+ else if (cd_values[0] & H5_SZIP_MSB_OPTION_MASK) {
+ HDfprintf(stdout, "MSB");
+ }
+ HDfprintf(stdout, "\" ");
if (cd_values[0] & H5_SZIP_RAW_OPTION_MASK) {
- printf("Header=\"Raw\"");
+ HDfprintf(stdout, "Header=\"Raw\"");
}
- printf("/>\n");
- } else {
+ HDfprintf(stdout, "/>\n");
+ }
+ else {
/* unknown option */
}
}
@@ -6695,124 +6753,125 @@ check_filters(hid_t dcpl)
static void
xml_dump_fill_value(hid_t dcpl, hid_t type)
{
- size_t sz;
- size_t i;
- hsize_t space;
- void * buf;
- char * name;
+ size_t sz;
+ size_t i;
+ hsize_t space;
+ void *buf;
+ char *name;
indent += COL;
indentation(indent);
- printf("<%sData>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
indent += COL;
space = H5Tget_size(type);
- buf = malloc((size_t)space);
+ buf = malloc((size_t) space);
H5Pget_fill_value(dcpl, type, buf);
if (H5Tget_class(type) == H5T_REFERENCE) {
- const char * path;
-
- path = lookup_ref_path(*(hobj_ref_t *)buf);
+ const char * path = lookup_ref_path(*(hobj_ref_t *) buf);
indentation(indent);
- printf("<%sDataFromFile>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sDataFromFile>\n", xmlnsprefix);
if (!path) {
- printf("\"%s\"\n", "NULL");
- } else {
+ HDfprintf(stdout, "\"%s\"\n", "NULL");
+ }
+ else {
char *t_path = xml_escape_the_string(path, -1);
- printf("\"%s\"\n", t_path);
+ HDfprintf(stdout, "\"%s\"\n", t_path);
free(t_path);
}
indentation(indent);
- printf("</%sDataFromFile>\n",xmlnsprefix);
- } else if (H5Tget_class(type) == H5T_STRING) {
- /* ????? */
- indentation(indent);
- printf("<!-- String fill values not yet implemented. -->\n");
- indentation(indent);
- printf("<%sNoData />\n",xmlnsprefix);
- } else {
+ HDfprintf(stdout, "</%sDataFromFile>\n", xmlnsprefix);
+ }
+ else if (H5Tget_class(type) == H5T_STRING) {
+ /* ????? */
+ indentation(indent);
+ HDfprintf(stdout, "<!-- String fill values not yet implemented. -->\n");
+ indentation(indent);
+ HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
+ }
+ else {
/* all other data */
switch (H5Tget_class(type)) {
- case H5T_INTEGER:
- indentation(indent);
- printf("<%sDataFromFile>\n",xmlnsprefix);
- indentation(indent);
- printf("\"%d\"\n",*(int *)buf);
- indentation(indent);
- printf("</%sDataFromFile>\n",xmlnsprefix);
- break;
- case H5T_FLOAT:
- indentation(indent);
- printf("<%sDataFromFile>\n",xmlnsprefix);
- indentation(indent);
- printf("\"%f\"\n",*(float *)buf);
- indentation(indent);
- printf("</%sDataFromFile>\n",xmlnsprefix);
- break;
- case H5T_BITFIELD:
- case H5T_OPAQUE:
- indentation(indent);
- printf("<%sDataFromFile>\n",xmlnsprefix);
- sz = H5Tget_size(type);
- indentation(indent);
- printf("\"");
- for (i = 0; i < sz; i++) {
- printf("%x ",*(unsigned int *)buf);
- buf = (char *)buf + sizeof(unsigned int);
- }
- printf("\"\n");
- indentation(indent);
- printf("</%sDataFromFile>\n",xmlnsprefix);
- break;
- case H5T_ENUM:
- indentation(indent);
- printf("<%sDataFromFile>\n",xmlnsprefix);
- name = H5Tget_member_name(type, *(unsigned *)buf);
- indentation(indent);
- printf("\"%s\"\n",name);
- indentation(indent);
- printf("</%sDataFromFile>\n",xmlnsprefix);
- break;
- case H5T_ARRAY:
- indentation(indent);
- printf("<!-- Array fill values not yet implemented. -->\n");
- indentation(indent);
- printf("<%sNoData />\n",xmlnsprefix);
- break;
- case H5T_TIME:
- indentation(indent);
- printf("<!-- Time fill not yet implemented. -->\n");
- indentation(indent);
- printf("<%sNoData />\n",xmlnsprefix);
- break;
- case H5T_COMPOUND:
- indentation(indent);
- printf("<!-- Compound fill not yet implemented. -->\n");
- indentation(indent);
- printf("<%sNoData />\n",xmlnsprefix);
- break;
- case H5T_VLEN:
- indentation(indent);
- printf("<!-- VL fill not yet implemented. -->\n");
- indentation(indent);
- printf("<%sNoData />\n",xmlnsprefix);
- break;
- default:
- indentation(indent);
- printf("<!-- Unknown fill datatype: %d -->\n", H5Tget_class(type));
- indentation(indent);
- printf("<%sNoData/>\n",xmlnsprefix);
- break;
+ case H5T_INTEGER:
+ indentation(indent);
+ HDfprintf(stdout, "<%sDataFromFile>\n", xmlnsprefix);
+ indentation(indent);
+ HDfprintf(stdout, "\"%d\"\n", *(int *) buf);
+ indentation(indent);
+ HDfprintf(stdout, "</%sDataFromFile>\n", xmlnsprefix);
+ break;
+ case H5T_FLOAT:
+ indentation(indent);
+ HDfprintf(stdout, "<%sDataFromFile>\n", xmlnsprefix);
+ indentation(indent);
+ HDfprintf(stdout, "\"%f\"\n", *(float *) buf);
+ indentation(indent);
+ HDfprintf(stdout, "</%sDataFromFile>\n", xmlnsprefix);
+ break;
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ indentation(indent);
+ HDfprintf(stdout, "<%sDataFromFile>\n", xmlnsprefix);
+ sz = H5Tget_size(type);
+ indentation(indent);
+ HDfprintf(stdout, "\"");
+ for (i = 0; i < sz; i++) {
+ HDfprintf(stdout, "%x ", *(unsigned int *) buf);
+ buf = (char *) buf + sizeof(unsigned int);
+ }
+ HDfprintf(stdout, "\"\n");
+ indentation(indent);
+ HDfprintf(stdout, "</%sDataFromFile>\n", xmlnsprefix);
+ break;
+ case H5T_ENUM:
+ indentation(indent);
+ HDfprintf(stdout, "<%sDataFromFile>\n", xmlnsprefix);
+ name = H5Tget_member_name(type, *(unsigned *) buf);
+ indentation(indent);
+ HDfprintf(stdout, "\"%s\"\n", name);
+ indentation(indent);
+ HDfprintf(stdout, "</%sDataFromFile>\n", xmlnsprefix);
+ break;
+ case H5T_ARRAY:
+ indentation(indent);
+ HDfprintf(stdout, "<!-- Array fill values not yet implemented. -->\n");
+ indentation(indent);
+ HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
+ break;
+ case H5T_TIME:
+ indentation(indent);
+ HDfprintf(stdout, "<!-- Time fill not yet implemented. -->\n");
+ indentation(indent);
+ HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
+ break;
+ case H5T_COMPOUND:
+ indentation(indent);
+ HDfprintf(stdout, "<!-- Compound fill not yet implemented. -->\n");
+ indentation(indent);
+ HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
+ break;
+ case H5T_VLEN:
+ indentation(indent);
+ HDfprintf(stdout, "<!-- VL fill not yet implemented. -->\n");
+ indentation(indent);
+ HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
+ break;
+ default:
+ indentation(indent);
+ HDfprintf(stdout, "<!-- Unknown fill datatype: %d -->\n", H5Tget_class(type));
+ indentation(indent);
+ HDfprintf(stdout, "<%sNoData/>\n", xmlnsprefix);
+ break;
}
}
free(buf);
indent -= COL;
indentation(indent);
- printf("</%sData>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
indent -= COL;
}
@@ -6834,23 +6893,27 @@ xml_dump_fill_value(hid_t dcpl, hid_t type)
static void
xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset)
{
- hid_t type, space;
- hid_t dcpl;
- H5D_fill_value_t fvstatus;
- int maxdims;
- hsize_t *chsize;
- int ndims;
- int i;
- H5D_alloc_time_t at;
- H5D_fill_time_t ft;
- hsize_t tempi;
- char *tmp;
- char *t_name, *t_tmp, *t_prefix;
- unsigned attr_crt_order_flags;
- char *rstr = (char *)HDmalloc(100);
- char *pstr = (char *)HDmalloc(100);
+ hid_t type;
+ hid_t space;
+ hid_t dcpl;
+ H5D_fill_value_t fvstatus;
+ int maxdims;
+ hsize_t *chsize;
+ int ndims;
+ int i;
+ H5D_alloc_time_t at;
+ H5D_fill_time_t ft;
+ hsize_t tempi;
+ char *tmp;
+ char *t_name;
+ char *t_tmp;
+ char *t_prefix;
+ unsigned attr_crt_order_flags;
+
+ char *rstr = (char*) HDmalloc(100);
+ char *pstr = (char*) HDmalloc(100);
- tmp = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
+ tmp = (char*) HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2);
HDstrcpy(tmp, prefix);
HDstrcat(tmp, "/");
HDstrcat(tmp, name);
@@ -6862,8 +6925,9 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset)
xml_name_to_XID(tmp, rstr, 100, 1);
xml_name_to_XID(prefix, pstr, 100, 1);
- printf("<%sDataset Name=\"%s\" OBJ-XID=\"%s\" H5Path= \"%s\" Parents=\"%s\" H5ParentPaths=\"%s\">\n",xmlnsprefix,
- t_name, rstr, t_tmp, pstr, strcmp(prefix, "") ? t_prefix : "/");
+ HDfprintf(stdout, "<%sDataset Name=\"%s\" OBJ-XID=\"%s\" H5Path= \"%s\" Parents=\"%s\" H5ParentPaths=\"%s\">\n",
+ xmlnsprefix, t_name, rstr, t_tmp, pstr,
+ strcmp(prefix, "") ? t_prefix : "/");
HDfree(t_name);
HDfree(t_tmp);
@@ -6876,69 +6940,70 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset)
type = H5Dget_type(did);
space = H5Dget_space(did);
- /* query the creation properties for attributes */
+ /* query the creation properties for attributes */
H5Pget_attr_creation_order(dcpl, &attr_crt_order_flags);
/* Print information about storage layout */
- if(H5D_CHUNKED == H5Pget_layout(dcpl)) {
+ if (H5D_CHUNKED == H5Pget_layout(dcpl)) {
maxdims = H5Sget_simple_extent_ndims(space);
- chsize = (hsize_t *)malloc(maxdims * sizeof(hsize_t));
+ chsize = (hsize_t *) malloc(maxdims * sizeof(hsize_t));
indent += COL;
indentation(indent);
- printf("<%sStorageLayout>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sStorageLayout>\n", xmlnsprefix);
indent += COL;
indentation(indent);
- printf("<%sChunkedLayout ",xmlnsprefix);
+ HDfprintf(stdout, "<%sChunkedLayout ", xmlnsprefix);
ndims = H5Pget_chunk(dcpl, maxdims, chsize);
- printf("Ndims=\"%d\">\n", ndims);
+ HDfprintf(stdout, "Ndims=\"%d\">\n", ndims);
indent += COL;
for (i = 0; i < ndims; i++) {
indentation(indent);
- HDfprintf(stdout, "<%sChunkDimension DimSize=\"%Hu\" />\n",
- xmlnsprefix, chsize[i]);
+ HDfprintf(stdout, "<%sChunkDimension DimSize=\"%Hu\" />\n", xmlnsprefix, chsize[i]);
}
indentation(indent);
- printf("<%sRequiredFilter>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sRequiredFilter>\n", xmlnsprefix);
indent += COL;
check_filters(dcpl);
indent -= COL;
indentation(indent);
- printf("</%sRequiredFilter>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sRequiredFilter>\n", xmlnsprefix);
indent -= COL;
indentation(indent);
- printf("</%sChunkedLayout>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sChunkedLayout>\n", xmlnsprefix);
indent -= COL;
indentation(indent);
- printf("</%sStorageLayout>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sStorageLayout>\n", xmlnsprefix);
indent -= COL;
free(chsize);
- } else if (H5D_CONTIGUOUS == H5Pget_layout(dcpl)) {
+ }
+ else if (H5D_CONTIGUOUS == H5Pget_layout(dcpl)) {
indent += COL;
indentation(indent);
- printf("<%sStorageLayout>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sStorageLayout>\n", xmlnsprefix);
indent += COL;
indentation(indent);
- printf("<%sContiguousLayout/>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sContiguousLayout/>\n", xmlnsprefix);
indent -= COL;
indentation(indent);
- printf("</%sStorageLayout>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sStorageLayout>\n", xmlnsprefix);
indent -= COL;
indentation(indent);
- } else if (H5D_COMPACT == H5Pget_layout(dcpl)) {
+ }
+ else if (H5D_COMPACT == H5Pget_layout(dcpl)) {
indent += COL;
indentation(indent);
- printf("<%sStorageLayout>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sStorageLayout>\n", xmlnsprefix);
indent += COL;
indentation(indent);
- printf("<%sCompactLayout/>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sCompactLayout/>\n", xmlnsprefix);
indent -= COL;
indentation(indent);
- printf("</%sStorageLayout>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sStorageLayout>\n", xmlnsprefix);
indent -= COL;
indentation(indent);
}
@@ -6948,64 +7013,65 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset)
indent += COL;
indentation(indent);
- printf("<%sFillValueInfo ",xmlnsprefix);
+ HDfprintf(stdout, "<%sFillValueInfo ", xmlnsprefix);
H5Pget_fill_time(dcpl, &ft);
- printf("FillTime=\"");
- switch ( ft ) {
- case H5D_FILL_TIME_ALLOC:
- printf("FillOnAlloc");
- break;
- case H5D_FILL_TIME_NEVER:
- printf("FillNever");
- break;
- case H5D_FILL_TIME_IFSET:
- printf("FillIfSet");
- break;
- default:
- printf("?");
- break;
+ HDfprintf(stdout, "FillTime=\"");
+ switch (ft) {
+ case H5D_FILL_TIME_ALLOC:
+ HDfprintf(stdout, "FillOnAlloc");
+ break;
+ case H5D_FILL_TIME_NEVER:
+ HDfprintf(stdout, "FillNever");
+ break;
+ case H5D_FILL_TIME_IFSET:
+ HDfprintf(stdout, "FillIfSet");
+ break;
+ default:
+ HDfprintf(stdout, "?");
+ break;
}
- printf("\" ");
+ HDfprintf(stdout, "\" ");
H5Pget_alloc_time(dcpl, &at);
- printf("AllocationTime=\"");
- switch ( at ) {
- case H5D_ALLOC_TIME_EARLY:
- printf("Early");
- break;
- case H5D_ALLOC_TIME_INCR:
- printf("Incremental");
- break;
- case H5D_ALLOC_TIME_LATE:
- printf("Late");
- break;
- case H5D_ALLOC_TIME_DEFAULT:
- default:
- printf("?");
- break;
+ HDfprintf(stdout, "AllocationTime=\"");
+ switch (at) {
+ case H5D_ALLOC_TIME_EARLY:
+ HDfprintf(stdout, "Early");
+ break;
+ case H5D_ALLOC_TIME_INCR:
+ HDfprintf(stdout, "Incremental");
+ break;
+ case H5D_ALLOC_TIME_LATE:
+ HDfprintf(stdout, "Late");
+ break;
+ case H5D_ALLOC_TIME_DEFAULT:
+ default:
+ HDfprintf(stdout, "?");
+ break;
}
- printf("\"");
- printf(">\n");
+ HDfprintf(stdout, "\"");
+ HDfprintf(stdout, ">\n");
indent += COL;
indentation(indent);
- printf("<%sFillValue>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sFillValue>\n", xmlnsprefix);
indent += COL;
H5Pfill_value_defined(dcpl, &fvstatus);
- if (fvstatus == H5D_FILL_VALUE_UNDEFINED ||
- (fvstatus==H5D_FILL_VALUE_DEFAULT && ft==H5D_FILL_TIME_IFSET)) {
+ if (fvstatus == H5D_FILL_VALUE_UNDEFINED ||
+ (fvstatus == H5D_FILL_VALUE_DEFAULT && ft == H5D_FILL_TIME_IFSET)) {
indentation(indent + COL);
- printf("<%sNoFill/>\n",xmlnsprefix);
- } else {
- xml_dump_fill_value(dcpl,type);
+ HDfprintf(stdout, "<%sNoFill/>\n", xmlnsprefix);
+ }
+ else {
+ xml_dump_fill_value(dcpl, type);
}
indent -= COL;
indentation(indent);
- printf("</%sFillValue>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sFillValue>\n", xmlnsprefix);
indent -= COL;
indentation(indent);
- printf("</%sFillValueInfo>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sFillValueInfo>\n", xmlnsprefix);
indent -= COL;
dump_function_table->dump_dataspace_function(space);
@@ -7013,14 +7079,14 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset)
indent += COL;
- if((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
- if(H5Aiterate2(did, sort_by, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
+ if ((sort_by == H5_INDEX_CRT_ORDER) && (attr_crt_order_flags & H5P_CRT_ORDER_TRACKED)) {
+ if (H5Aiterate2(did, sort_by, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
error_msg("error getting attribute information\n");
h5tools_setstatus(EXIT_FAILURE);
} /* end if */
} /* end if */
else {
- if(H5Aiterate2(did, H5_INDEX_NAME, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
+ if (H5Aiterate2(did, H5_INDEX_NAME, sort_order, NULL, dump_function_table->dump_attribute_function, NULL) < 0) {
error_msg("error getting attribute information\n");
h5tools_setstatus(EXIT_FAILURE);
} /* end if */
@@ -7031,83 +7097,85 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset)
if (display_data && (tempi > 0)) {
switch (H5Tget_class(type)) {
- case H5T_INTEGER:
- case H5T_FLOAT:
- case H5T_STRING:
- case H5T_BITFIELD:
- case H5T_OPAQUE:
- case H5T_ENUM:
- case H5T_ARRAY:
- dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0);
- break;
+ case H5T_INTEGER:
+ case H5T_FLOAT:
+ case H5T_STRING:
+ case H5T_BITFIELD:
+ case H5T_OPAQUE:
+ case H5T_ENUM:
+ case H5T_ARRAY:
+ dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0);
+ break;
- case H5T_TIME:
- indent += COL;
- indentation(indent);
- printf("<%sData>\n",xmlnsprefix);
- indentation(indent);
- printf("<!-- Time data not yet implemented. -->\n");
- indentation(indent);
- printf("<%sNoData />\n",xmlnsprefix);
- indentation(indent);
- printf("<%sData>\n",xmlnsprefix);
- indent -= COL;
- break;
+ case H5T_TIME:
+ indent += COL;
+ indentation(indent);
+ HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
+ indentation(indent);
+ HDfprintf(stdout, "<!-- Time data not yet implemented. -->\n");
+ indentation(indent);
+ HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
+ indentation(indent);
+ HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
+ indent -= COL;
+ break;
- case H5T_COMPOUND:
- indentation(indent);
- printf("<!-- Note: format of compound data not specified -->\n");
- dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0);
- break;
+ case H5T_COMPOUND:
+ indentation(indent);
+ HDfprintf(stdout, "<!-- Note: format of compound data not specified -->\n");
+ dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0);
+ break;
- case H5T_REFERENCE:
- indentation(indent);
- printf("<%sData>\n",xmlnsprefix);
+ case H5T_REFERENCE:
+ indentation(indent);
+ HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
+ indentation(indent);
+ if (!H5Tequal(type, H5T_STD_REF_OBJ)) {
+ HDfprintf(stdout, "<!-- Note: Region references not supported -->\n");
indentation(indent);
- if (!H5Tequal(type, H5T_STD_REF_OBJ)) {
- printf("<!-- Note: Region references not supported -->\n");
- indentation(indent);
- printf("<%sNoData />\n",xmlnsprefix);
- } else {
- printf("<%sDataFromFile>\n",xmlnsprefix);
- xml_print_refs(did, DATASET_DATA);
- indentation(indent);
- printf("</%sDataFromFile>\n",xmlnsprefix);
- }
+ HDfprintf(stdout, "<%sNoData />\n", xmlnsprefix);
+ }
+ else {
+ HDfprintf(stdout, "<%sDataFromFile>\n", xmlnsprefix);
+ xml_print_refs(did, DATASET_DATA);
indentation(indent);
- printf("</%sData>\n",xmlnsprefix);
- break;
+ HDfprintf(stdout, "</%sDataFromFile>\n", xmlnsprefix);
+ }
+ indentation(indent);
+ HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
+ break;
- case H5T_VLEN:
- printf("<!-- Note: format of VL data not specified -->\n");
- dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0);
- break;
- default:
- indentation(indent);
- printf("<%sData>\n",xmlnsprefix);
- indentation(indent);
- printf("<!-- Unknown datatype: %d -->\n", H5Tget_class(type));
- indentation(indent);
- printf("<%sNoData/>\n",xmlnsprefix);
- indentation(indent);
- printf("</%sData>\n",xmlnsprefix);
- break;
+ case H5T_VLEN:
+ HDfprintf(stdout, "<!-- Note: format of VL data not specified -->\n");
+ dump_function_table->dump_data_function(did, DATASET_DATA, NULL, 0);
+ break;
+ default:
+ indentation(indent);
+ HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
+ indentation(indent);
+ HDfprintf(stdout, "<!-- Unknown datatype: %d -->\n", H5Tget_class(type));
+ indentation(indent);
+ HDfprintf(stdout, "<%sNoData/>\n", xmlnsprefix);
+ indentation(indent);
+ HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
+ break;
}
- } else {
+ }
+ else {
/* no data written */
indentation(indent + COL);
- printf("<%sData>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sData>\n", xmlnsprefix);
indentation(indent + COL + COL);
- printf("<%sNoData/>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sNoData/>\n", xmlnsprefix);
indentation(indent + COL);
- printf("</%sData>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sData>\n", xmlnsprefix);
}
H5Tclose(type);
H5Sclose(space);
H5Pclose(dcpl);
indentation(indent);
- printf("</%sDataset>\n", xmlnsprefix);
+ HDfprintf(stdout, "</%sDataset>\n", xmlnsprefix);
}
/*-------------------------------------------------------------------------
@@ -7127,23 +7195,23 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset)
static void
xml_print_enum(hid_t type)
{
- char **name = NULL; /*member names */
- unsigned char *value = NULL; /*value array */
- unsigned nmembs; /*number of members */
- hid_t super; /*enum base integer type */
- hid_t native = -1; /*native integer datatype */
- size_t dst_size; /*destination value type size */
- unsigned i; /*miscellaneous counters */
- size_t j;
+ char **name = NULL; /*member names */
+ unsigned char *value = NULL; /*value array */
+ unsigned nmembs; /*number of members */
+ hid_t super; /*enum base integer type */
+ hid_t native = -1; /*native integer datatype */
+ size_t dst_size; /*destination value type size */
+ unsigned i; /*miscellaneous counters */
+ size_t j;
nmembs = (unsigned)H5Tget_nmembers(type);
super = H5Tget_super(type);
indentation(indent);
- printf("<%sDataType>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sDataType>\n",xmlnsprefix);
xml_print_datatype(super,0);
indentation(indent);
- printf("</%sDataType>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sDataType>\n",xmlnsprefix);
/*
* Determine what datatype to use for the native values. To simplify
@@ -7157,10 +7225,12 @@ xml_print_enum(hid_t type)
if (H5T_SGN_NONE == H5Tget_sign(type)) {
native = H5T_NATIVE_ULLONG;
- } else {
+ }
+ else {
native = H5T_NATIVE_LLONG;
}
- } else {
+ }
+ else {
dst_size = H5Tget_size(type);
}
@@ -7186,30 +7256,32 @@ xml_print_enum(hid_t type)
char *t_name = xml_escape_the_name(name[i]);
indentation(indent);
- printf("<%sEnumElement>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sEnumElement>\n",xmlnsprefix);
indentation(indent + COL);
- printf("%s\n", t_name);
+ HDfprintf(stdout, "%s\n", t_name);
free(t_name);
indentation(indent);
- printf("</%sEnumElement>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sEnumElement>\n",xmlnsprefix);
indentation(indent);
- printf("<%sEnumValue>\n",xmlnsprefix);
+ HDfprintf(stdout, "<%sEnumValue>\n",xmlnsprefix);
indentation(indent + COL);
if (native < 0) {
- printf("0x");
+ HDfprintf(stdout, "0x");
for (j = 0; j < dst_size; j++)
- printf("%02x", value[i * dst_size + j]);
- } else if (H5T_SGN_NONE == H5Tget_sign(native)) {
+ HDfprintf(stdout, "%02x", value[i * dst_size + j]);
+ }
+ else if (H5T_SGN_NONE == H5Tget_sign(native)) {
HDfprintf(stdout,"%" H5_PRINTF_LL_WIDTH "u", *((unsigned long long *)
- ((void *) (value + i * dst_size))));
- } else {
+ ((void *) (value + i * dst_size))));
+ }
+ else {
HDfprintf(stdout,"%" H5_PRINTF_LL_WIDTH "d",
- *((long long *) ((void *) (value + i * dst_size))));
+ *((long long *) ((void *) (value + i * dst_size))));
}
- printf("\n");
+ HDfprintf(stdout, "\n");
indentation(indent);
- printf("</%sEnumValue>\n",xmlnsprefix);
+ HDfprintf(stdout, "</%sEnumValue>\n",xmlnsprefix);
}
indent -= COL;
@@ -7248,8 +7320,8 @@ h5_fileaccess(void)
static const char *multi_letters = "msbrglo";
const char *val = NULL;
const char *name;
- char s[1024];
- hid_t fapl = -1;
+ char s[1024];
+ hid_t fapl = -1;
/* First use the environment variable, then the constant */
val = HDgetenv("HDF5_DRIVER");
@@ -7267,26 +7339,28 @@ h5_fileaccess(void)
if (!HDstrcmp(name, "sec2")) {
/* Unix read() and write() system calls */
if (H5Pset_fapl_sec2(fapl)<0) return -1;
- } else if (!HDstrcmp(name, "stdio")) {
+ }
+ else if (!HDstrcmp(name, "stdio")) {
/* Standard C fread() and fwrite() system calls */
if (H5Pset_fapl_stdio(fapl)<0) return -1;
- } else if (!HDstrcmp(name, "core")) {
+ }
+ else if (!HDstrcmp(name, "core")) {
/* In-core temporary file with 1MB increment */
if (H5Pset_fapl_core(fapl, 1024*1024, FALSE)<0) return -1;
- } else if (!HDstrcmp(name, "split")) {
+ }
+ else if (!HDstrcmp(name, "split")) {
/* Split meta data and raw data each using default driver */
- if (H5Pset_fapl_split(fapl,
- "-m.h5", H5P_DEFAULT,
- "-r.h5", H5P_DEFAULT)<0)
- return -1;
- } else if (!HDstrcmp(name, "multi")) {
+ if (H5Pset_fapl_split(fapl, "-m.h5", H5P_DEFAULT, "-r.h5", H5P_DEFAULT) < 0)
+ return -1;
+ }
+ else if (!HDstrcmp(name, "multi")) {
/* Multi-file driver, general case of the split driver */
- H5FD_mem_t memb_map[H5FD_MEM_NTYPES];
- hid_t memb_fapl[H5FD_MEM_NTYPES];
- const char *memb_name[H5FD_MEM_NTYPES];
- char sv[H5FD_MEM_NTYPES][1024];
- haddr_t memb_addr[H5FD_MEM_NTYPES];
- H5FD_mem_t mt;
+ H5FD_mem_t memb_map[H5FD_MEM_NTYPES];
+ hid_t memb_fapl[H5FD_MEM_NTYPES];
+ const char *memb_name[H5FD_MEM_NTYPES];
+ char sv[H5FD_MEM_NTYPES][1024];
+ haddr_t memb_addr[H5FD_MEM_NTYPES];
+ H5FD_mem_t mt;
HDmemset(memb_map, 0, sizeof memb_map);
HDmemset(memb_fapl, 0, sizeof memb_fapl);
@@ -7296,24 +7370,25 @@ h5_fileaccess(void)
assert(HDstrlen(multi_letters)==H5FD_MEM_NTYPES);
for (mt=H5FD_MEM_DEFAULT; mt<H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t,mt)) {
memb_fapl[mt] = H5P_DEFAULT;
- memb_map[mt] = mt;
+ memb_map[mt] = mt;
sprintf(sv[mt], "%%s-%c.h5", multi_letters[mt]);
memb_name[mt] = sv[mt];
memb_addr[mt] = MAX(mt-1,0)*(HADDR_MAX/10);
}
- if (H5Pset_fapl_multi(fapl, memb_map, memb_fapl, memb_name,
- memb_addr, FALSE) < 0)
+ if (H5Pset_fapl_multi(fapl, memb_map, memb_fapl, memb_name, memb_addr, FALSE) < 0)
return -1;
- } else if (!HDstrcmp(name, "family")) {
+ }
+ else if (!HDstrcmp(name, "family")) {
hsize_t fam_size = 100*1024*1024; /*100 MB*/
/* Family of files, each 1MB and using the default driver */
if ((val=HDstrtok(NULL, " \t\n\r")))
fam_size = (hsize_t)(HDstrtod(val, NULL) * 1024*1024);
if (H5Pset_fapl_family(fapl, fam_size, H5P_DEFAULT)<0)
- return -1;
- } else if (!HDstrcmp(name, "log")) {
+ return -1;
+ }
+ else if (!HDstrcmp(name, "log")) {
long log_flags = H5FD_LOG_LOC_IO;
/* Log file access */
@@ -7322,11 +7397,13 @@ h5_fileaccess(void)
if (H5Pset_fapl_log(fapl, NULL, (unsigned)log_flags, 0) < 0)
return -1;
- } else if (!HDstrcmp(name, "direct")) {
+ }
+ else if (!HDstrcmp(name, "direct")) {
/* Substitute Direct I/O driver with sec2 driver temporarily because
* some output has sec2 driver as the standard. */
if (H5Pset_fapl_sec2(fapl)<0) return -1;
- } else {
+ }
+ else {
/* Unknown driver */
return -1;
}
@@ -7378,7 +7455,7 @@ add_prefix(char **prfx, size_t *prfx_len, const char *name)
HDstrcat(HDstrcat(*prfx, "/"), name);
} /* end add_prefix */
-
+
/*-------------------------------------------------------------------------
* Function: dump_extlink
*
@@ -7399,6 +7476,7 @@ add_prefix(char **prfx, size_t *prfx_len, const char *name)
*-------------------------------------------------------------------------
*/
+
static int dump_extlink(hid_t group, const char *linkname, const char *objname)
{
hid_t oid;
@@ -7409,7 +7487,6 @@ static int dump_extlink(hid_t group, const char *linkname, const char *objname)
hbool_t old_hit_elink;
ssize_t idx;
-
/* Open target object */
if ((oid = H5Oopen(group, linkname, H5P_DEFAULT)) < 0)
goto fail;
@@ -7472,12 +7549,9 @@ static int dump_extlink(hid_t group, const char *linkname, const char *objname)
if (H5Idec_ref(oid) < 0)
h5tools_setstatus(EXIT_FAILURE);
-
return SUCCEED;
fail:
-
return FAIL;
-
}
diff --git a/tools/h5dump/h5dump.h b/tools/h5dump/h5dump.h
index 3e34538..be77002 100644
--- a/tools/h5dump/h5dump.h
+++ b/tools/h5dump/h5dump.h
@@ -69,11 +69,9 @@
#define EXTERNAL_FILE "EXTERNAL_FILE"
#define FILLVALUE "FILLVALUE"
#define FILE_CONTENTS "FILE_CONTENTS"
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
#define PACKED_BITS "PACKED_BITS"
#define PACKED_OFFSET "OFFSET"
#define PACKED_LENGTH "LENGTH"
-#endif
#define BEGIN "{"
#define END "}"
diff --git a/tools/h5dump/testh5dump.sh.in b/tools/h5dump/testh5dump.sh.in
index f8da64b..9406df7 100644
--- a/tools/h5dump/testh5dump.sh.in
+++ b/tools/h5dump/testh5dump.sh.in
@@ -23,9 +23,6 @@ USE_FILTER_FLETCHER32="@USE_FILTER_FLETCHER32@"
USE_FILTER_NBIT="@USE_FILTER_NBIT@"
USE_FILTER_SCALEOFFSET="@USE_FILTER_SCALEOFFSET@"
-# Determine if H5dump packed bits feature is included
-Have_Packed_Bits="@PACKED_BITS@"
-
TESTNAME=h5dump
EXIT_SUCCESS=0
EXIT_FAILURE=1
@@ -82,12 +79,12 @@ TOOLTEST() {
echo "#############################"
echo "Expected output for '$DUMPER $@'"
echo "#############################"
- cd $srcdir/../testfiles
- $RUNSERIAL $DUMPER_BIN $@
+ cd $srcdir/../testfiles
+ $RUNSERIAL $DUMPER_BIN $@
) >$actual 2>$actual_err
cat $actual_err >> $actual
- if [ ! -f $expect ]; then
+ if [ ! -f $expect ]; then
# Create the expect file if it doesn't yet exist.
echo " CREATED"
cp $actual $expect
@@ -96,13 +93,13 @@ TOOLTEST() {
else
echo "*FAILED*"
echo " Expected result (*.ddl) differs from actual result (*.out)"
- nerrors="`expr $nerrors + 1`"
- test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
fi
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
- rm -f $actual $actual_err
+ rm -f $actual $actual_err
fi
}
@@ -121,12 +118,12 @@ TOOLTEST1() {
TESTING $DUMPER $@
(
- cd $srcdir/../testfiles
- $RUNSERIAL $DUMPER_BIN $@
+ cd $srcdir/../testfiles
+ $RUNSERIAL $DUMPER_BIN $@
) >$actual 2>$actual_err
cat $actual_err >> $actual
- if [ ! -f $expect ]; then
+ if [ ! -f $expect ]; then
# Create the expect file if it doesn't yet exist.
echo " CREATED"
cp $actual $expect
@@ -135,13 +132,13 @@ TOOLTEST1() {
else
echo "*FAILED*"
echo " Expected result (*.ddl) differs from actual result (*.out)"
- nerrors="`expr $nerrors + 1`"
- test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
fi
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
- rm -f $actual $actual_err
+ rm -f $actual $actual_err
fi
}
@@ -250,8 +247,8 @@ TOOLTEST3() {
# Print a "SKIP" message
SKIP() {
- TESTING $DUMPER $@
- echo " -SKIP-"
+ TESTING $DUMPER $@
+ echo " -SKIP-"
}
# Print a line-line message left justified in a field of 70 characters
@@ -268,8 +265,8 @@ DIFFTEST()
{
PRINT_H5DIFF $@
(
- cd $srcdir/../testfiles
- $RUNSERIAL $H5DIFF_BIN "$@" -q
+ cd $srcdir/../testfiles
+ $RUNSERIAL $H5DIFF_BIN "$@" -q
)
RET=$?
if [ $RET != 0 ] ; then
@@ -301,8 +298,8 @@ IMPORTTEST()
PRINT_H5IMPORT $@
(
- cd $srcdir/../testfiles
- $RUNSERIAL $H5IMPORT_BIN "$@"
+ cd $srcdir/../testfiles
+ $RUNSERIAL $H5IMPORT_BIN "$@"
)
RET=$?
if [ $RET != 0 ] ; then
@@ -317,7 +314,7 @@ IMPORTTEST()
##############################################################################
##############################################################################
-### T H E T E S T S ###
+### T H E T E S T S ###
##############################################################################
##############################################################################
@@ -646,12 +643,6 @@ TOOLTEST3 filter_fail.ddl --enable-error-stack filter_fail.h5
TOOLTEST1 tall-6.ddl -y -o $TESTDIR/data -d /g1/g1.1/dset1.1.1 tall.h5
# test for dataset packed bits
-# Set up xCMD to test or skip.
-if test "$Have_Packed_Bits" = "yes"; then
- xCMD=TOOLTEST
-else
- xCMD=SKIP
-fi
# Limits:
# Maximum number of packed bits is 8 (for now).
# Maximum integer size is 64 (for now).
@@ -661,72 +652,72 @@ fi
# Normal operation on both signed and unsigned int datasets.
# Sanity check
# Their rawdata output should be the same.
-$xCMD tpbitsSignedWhole.ddl -d /DS08BITS -M 0,8 packedbits.h5
-$xCMD tpbitsUnsignedWhole.ddl -d /DU08BITS -M 0,8 packedbits.h5
-$xCMD tpbitsSignedIntWhole.ddl -d /DS16BITS -M 0,16 packedbits.h5
-$xCMD tpbitsUnsignedIntWhole.ddl -d /DU16BITS -M 0,16 packedbits.h5
-$xCMD tpbitsSignedLongWhole.ddl -d /DS32BITS -M 0,32 packedbits.h5
-$xCMD tpbitsUnsignedLongWhole.ddl -d /DU32BITS -M 0,32 packedbits.h5
-$xCMD tpbitsSignedLongLongWhole.ddl -d /DS64BITS -M 0,64 packedbits.h5
-$xCMD tpbitsUnsignedLongLongWhole.ddl -d /DU64BITS -M 0,64 packedbits.h5
-$xCMD tpbitsSignedLongLongWhole63.ddl -d /DS64BITS -M 0,63 packedbits.h5
-$xCMD tpbitsUnsignedLongLongWhole63.ddl -d /DU64BITS -M 0,63 packedbits.h5
-$xCMD tpbitsSignedLongLongWhole1.ddl -d /DS64BITS -M 1,63 packedbits.h5
-$xCMD tpbitsUnsignedLongLongWhole1.ddl -d /DU64BITS -M 1,63 packedbits.h5
+TOOLTEST tpbitsSignedWhole.ddl -d /DS08BITS -M 0,8 packedbits.h5
+TOOLTEST tpbitsUnsignedWhole.ddl -d /DU08BITS -M 0,8 packedbits.h5
+TOOLTEST tpbitsSignedIntWhole.ddl -d /DS16BITS -M 0,16 packedbits.h5
+TOOLTEST tpbitsUnsignedIntWhole.ddl -d /DU16BITS -M 0,16 packedbits.h5
+TOOLTEST tpbitsSignedLongWhole.ddl -d /DS32BITS -M 0,32 packedbits.h5
+TOOLTEST tpbitsUnsignedLongWhole.ddl -d /DU32BITS -M 0,32 packedbits.h5
+TOOLTEST tpbitsSignedLongLongWhole.ddl -d /DS64BITS -M 0,64 packedbits.h5
+TOOLTEST tpbitsUnsignedLongLongWhole.ddl -d /DU64BITS -M 0,64 packedbits.h5
+TOOLTEST tpbitsSignedLongLongWhole63.ddl -d /DS64BITS -M 0,63 packedbits.h5
+TOOLTEST tpbitsUnsignedLongLongWhole63.ddl -d /DU64BITS -M 0,63 packedbits.h5
+TOOLTEST tpbitsSignedLongLongWhole1.ddl -d /DS64BITS -M 1,63 packedbits.h5
+TOOLTEST tpbitsUnsignedLongLongWhole1.ddl -d /DU64BITS -M 1,63 packedbits.h5
# Half sections
-$xCMD tpbitsSigned4.ddl -d /DS08BITS -M 0,4,4,4 packedbits.h5
-$xCMD tpbitsUnsigned4.ddl -d /DU08BITS -M 0,4,4,4 packedbits.h5
-$xCMD tpbitsSignedInt8.ddl -d /DS16BITS -M 0,8,8,8 packedbits.h5
-$xCMD tpbitsUnsignedInt8.ddl -d /DU16BITS -M 0,8,8,8 packedbits.h5
-$xCMD tpbitsSignedLong16.ddl -d /DS32BITS -M 0,16,16,16 packedbits.h5
-$xCMD tpbitsUnsignedLong16.ddl -d /DU32BITS -M 0,16,16,16 packedbits.h5
-$xCMD tpbitsSignedLongLong32.ddl -d /DS64BITS -M 0,32,32,32 packedbits.h5
-$xCMD tpbitsUnsignedLongLong32.ddl -d /DU64BITS -M 0,32,32,32 packedbits.h5
+TOOLTEST tpbitsSigned4.ddl -d /DS08BITS -M 0,4,4,4 packedbits.h5
+TOOLTEST tpbitsUnsigned4.ddl -d /DU08BITS -M 0,4,4,4 packedbits.h5
+TOOLTEST tpbitsSignedInt8.ddl -d /DS16BITS -M 0,8,8,8 packedbits.h5
+TOOLTEST tpbitsUnsignedInt8.ddl -d /DU16BITS -M 0,8,8,8 packedbits.h5
+TOOLTEST tpbitsSignedLong16.ddl -d /DS32BITS -M 0,16,16,16 packedbits.h5
+TOOLTEST tpbitsUnsignedLong16.ddl -d /DU32BITS -M 0,16,16,16 packedbits.h5
+TOOLTEST tpbitsSignedLongLong32.ddl -d /DS64BITS -M 0,32,32,32 packedbits.h5
+TOOLTEST tpbitsUnsignedLongLong32.ddl -d /DU64BITS -M 0,32,32,32 packedbits.h5
# Quarter sections
-$xCMD tpbitsSigned2.ddl -d /DS08BITS -M 0,2,2,2,4,2,6,2 packedbits.h5
-$xCMD tpbitsUnsigned2.ddl -d /DU08BITS -M 0,2,2,2,4,2,6,2 packedbits.h5
-$xCMD tpbitsSignedInt4.ddl -d /DS16BITS -M 0,4,4,4,8,4,12,4 packedbits.h5
-$xCMD tpbitsUnsignedInt4.ddl -d /DU16BITS -M 0,4,4,4,8,4,12,4 packedbits.h5
-$xCMD tpbitsSignedLong8.ddl -d /DS32BITS -M 0,8,8,8,16,8,24,8 packedbits.h5
-$xCMD tpbitsUnsignedLong8.ddl -d /DU32BITS -M 0,8,8,8,16,8,24,8 packedbits.h5
-$xCMD tpbitsSignedLongLong16.ddl -d /DS64BITS -M 0,16,16,16,32,16,48,16 packedbits.h5
-$xCMD tpbitsUnsignedLongLong16.ddl -d /DU64BITS -M 0,16,16,16,32,16,48,16 packedbits.h5
+TOOLTEST tpbitsSigned2.ddl -d /DS08BITS -M 0,2,2,2,4,2,6,2 packedbits.h5
+TOOLTEST tpbitsUnsigned2.ddl -d /DU08BITS -M 0,2,2,2,4,2,6,2 packedbits.h5
+TOOLTEST tpbitsSignedInt4.ddl -d /DS16BITS -M 0,4,4,4,8,4,12,4 packedbits.h5
+TOOLTEST tpbitsUnsignedInt4.ddl -d /DU16BITS -M 0,4,4,4,8,4,12,4 packedbits.h5
+TOOLTEST tpbitsSignedLong8.ddl -d /DS32BITS -M 0,8,8,8,16,8,24,8 packedbits.h5
+TOOLTEST tpbitsUnsignedLong8.ddl -d /DU32BITS -M 0,8,8,8,16,8,24,8 packedbits.h5
+TOOLTEST tpbitsSignedLongLong16.ddl -d /DS64BITS -M 0,16,16,16,32,16,48,16 packedbits.h5
+TOOLTEST tpbitsUnsignedLongLong16.ddl -d /DU64BITS -M 0,16,16,16,32,16,48,16 packedbits.h5
# Begin and End
-$xCMD tpbitsSigned.ddl -d /DS08BITS -M 0,2,2,6 packedbits.h5
-$xCMD tpbitsUnsigned.ddl -d /DU08BITS -M 0,2,2,6 packedbits.h5
-$xCMD tpbitsSignedInt.ddl -d /DS16BITS -M 0,2,10,6 packedbits.h5
-$xCMD tpbitsUnsignedInt.ddl -d /DU16BITS -M 0,2,10,6 packedbits.h5
-$xCMD tpbitsSignedLong.ddl -d /DS32BITS -M 0,2,26,6 packedbits.h5
-$xCMD tpbitsUnsignedLong.ddl -d /DU32BITS -M 0,2,26,6 packedbits.h5
-$xCMD tpbitsSignedLongLong.ddl -d /DS64BITS -M 0,2,58,6 packedbits.h5
-$xCMD tpbitsUnsignedLongLong.ddl -d /DU64BITS -M 0,2,58,6 packedbits.h5
+TOOLTEST tpbitsSigned.ddl -d /DS08BITS -M 0,2,2,6 packedbits.h5
+TOOLTEST tpbitsUnsigned.ddl -d /DU08BITS -M 0,2,2,6 packedbits.h5
+TOOLTEST tpbitsSignedInt.ddl -d /DS16BITS -M 0,2,10,6 packedbits.h5
+TOOLTEST tpbitsUnsignedInt.ddl -d /DU16BITS -M 0,2,10,6 packedbits.h5
+TOOLTEST tpbitsSignedLong.ddl -d /DS32BITS -M 0,2,26,6 packedbits.h5
+TOOLTEST tpbitsUnsignedLong.ddl -d /DU32BITS -M 0,2,26,6 packedbits.h5
+TOOLTEST tpbitsSignedLongLong.ddl -d /DS64BITS -M 0,2,58,6 packedbits.h5
+TOOLTEST tpbitsUnsignedLongLong.ddl -d /DU64BITS -M 0,2,58,6 packedbits.h5
# Overlapped packed bits.
-$xCMD tpbitsOverlapped.ddl -d /DS08BITS -M 0,1,1,1,2,1,0,3 packedbits.h5
+TOOLTEST tpbitsOverlapped.ddl -d /DS08BITS -M 0,1,1,1,2,1,0,3 packedbits.h5
# Maximum number of packed bits.
-$xCMD tpbitsMax.ddl -d /DS08BITS -M 0,1,1,1,2,1,3,1,4,1,5,1,6,1,7,1 packedbits.h5
+TOOLTEST tpbitsMax.ddl -d /DS08BITS -M 0,1,1,1,2,1,3,1,4,1,5,1,6,1,7,1 packedbits.h5
# Compound type.
-$xCMD tpbitsCompound.ddl -d /dset1 -M 0,1,1,1 tcompound.h5
+TOOLTEST tpbitsCompound.ddl -d /dset1 -M 0,1,1,1 tcompound.h5
# Array type.
-$xCMD tpbitsArray.ddl -d /Dataset1 -M 0,1,1,1 tarray1.h5
+TOOLTEST tpbitsArray.ddl -d /Dataset1 -M 0,1,1,1 tarray1.h5
# Test Error handling.
# Too many packed bits requested. Max is 8 for now.
-$xCMD tpbitsMaxExceeded.ddl -d /DS08BITS -M 0,1,0,1,1,1,2,1,3,1,4,1,5,1,6,1,7,1 packedbits.h5
+TOOLTEST tpbitsMaxExceeded.ddl -d /DS08BITS -M 0,1,0,1,1,1,2,1,3,1,4,1,5,1,6,1,7,1 packedbits.h5
# Offset too large. Max is 7 (8-1) for now.
-$xCMD tpbitsOffsetExceeded.ddl -d /DS08BITS -M 64,1 packedbits.h5
-$xCMD tpbitsCharOffsetExceeded.ddl -d /DS08BITS -M 8,1 packedbits.h5
-$xCMD tpbitsIntOffsetExceeded.ddl -d /DS16BITS -M 16,1 packedbits.h5
-$xCMD tpbitsLongOffsetExceeded.ddl -d /DS32BITS -M 32,1 packedbits.h5
+TOOLTEST tpbitsOffsetExceeded.ddl -d /DS08BITS -M 64,1 packedbits.h5
+TOOLTEST tpbitsCharOffsetExceeded.ddl -d /DS08BITS -M 8,1 packedbits.h5
+TOOLTEST tpbitsIntOffsetExceeded.ddl -d /DS16BITS -M 16,1 packedbits.h5
+TOOLTEST tpbitsLongOffsetExceeded.ddl -d /DS32BITS -M 32,1 packedbits.h5
# Bad offset, must not be negative.
-$xCMD tpbitsOffsetNegative.ddl -d /DS08BITS -M -1,1 packedbits.h5
+TOOLTEST tpbitsOffsetNegative.ddl -d /DS08BITS -M -1,1 packedbits.h5
# Bad length, must not be positive.
-$xCMD tpbitsLengthPositive.ddl -d /DS08BITS -M 4,0 packedbits.h5
+TOOLTEST tpbitsLengthPositive.ddl -d /DS08BITS -M 4,0 packedbits.h5
# Offset+Length is too large. Max is 8 for now.
-$xCMD tpbitsLengthExceeded.ddl -d /DS08BITS -M 37,28 packedbits.h5
-$xCMD tpbitsCharLengthExceeded.ddl -d /DS08BITS -M 2,7 packedbits.h5
-$xCMD tpbitsIntLengthExceeded.ddl -d /DS16BITS -M 10,7 packedbits.h5
-$xCMD tpbitsLongLengthExceeded.ddl -d /DS32BITS -M 26,7 packedbits.h5
+TOOLTEST tpbitsLengthExceeded.ddl -d /DS08BITS -M 37,28 packedbits.h5
+TOOLTEST tpbitsCharLengthExceeded.ddl -d /DS08BITS -M 2,7 packedbits.h5
+TOOLTEST tpbitsIntLengthExceeded.ddl -d /DS16BITS -M 10,7 packedbits.h5
+TOOLTEST tpbitsLongLengthExceeded.ddl -d /DS32BITS -M 26,7 packedbits.h5
# Incomplete pair of packed bits request.
-$xCMD tpbitsIncomplete.ddl -d /DS08BITS -M 0,2,2,1,0,2,2, packedbits.h5
+TOOLTEST tpbitsIncomplete.ddl -d /DS08BITS -M 0,2,2,1,0,2,2, packedbits.h5
# Report test results and exit
diff --git a/tools/h5import/CMakeLists.txt b/tools/h5import/CMakeLists.txt
index a2955db..39945d3 100644
--- a/tools/h5import/CMakeLists.txt
+++ b/tools/h5import/CMakeLists.txt
@@ -136,7 +136,7 @@ IF (BUILD_TESTING)
# If using memchecker add tests without using scripts
IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
ADD_TEST (
- NAME H5IMPORT-H5DUMP-${testname}
+ NAME H5IMPORT-H5DMP-${testname}
COMMAND "${CMAKE_COMMAND}"
-D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
-D "TEST_ARGS:STRING=${testfile}"
@@ -147,9 +147,9 @@ IF (BUILD_TESTING)
-D "TEST_SKIP_COMPARE=TRUE"
-P "${HDF5_RESOURCES_DIR}/runTest.cmake"
)
- SET_TESTS_PROPERTIES (H5IMPORT-H5DUMP-${testname} PROPERTIES DEPENDS H5IMPORT-${testname})
+ SET_TESTS_PROPERTIES (H5IMPORT-H5DMP-${testname} PROPERTIES DEPENDS H5IMPORT-${testname})
ADD_TEST (
- NAME H5IMPORT-H5DUMP_CMP-${testname}
+ NAME H5IMPORT-H5DMP_CMP-${testname}
COMMAND "${CMAKE_COMMAND}"
-D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
-D "TEST_ARGS:STRING=testfiles/${testfile}"
@@ -160,8 +160,8 @@ IF (BUILD_TESTING)
-D "TEST_REFERENCE=${testfile}.new"
-P "${HDF5_RESOURCES_DIR}/runTest.cmake"
)
- SET_TESTS_PROPERTIES (H5IMPORT-H5DUMP_CMP-${testname} PROPERTIES DEPENDS H5IMPORT-H5DUMP-${testname})
- SET (last_test "H5IMPORT-H5DUMP_CMP-${testname}")
+ SET_TESTS_PROPERTIES (H5IMPORT-H5DMP_CMP-${testname} PROPERTIES DEPENDS H5IMPORT-H5DMP-${testname})
+ SET (last_test "H5IMPORT-H5DMP_CMP-${testname}")
ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
ENDMACRO (ADD_H5_TEST testname resultcode testfile vparam srcname dstname)
diff --git a/tools/h5jam/CMakeLists.txt b/tools/h5jam/CMakeLists.txt
index 81a624d..979a1f3 100644
--- a/tools/h5jam/CMakeLists.txt
+++ b/tools/h5jam/CMakeLists.txt
@@ -119,7 +119,7 @@ IF (BUILD_TESTING)
SET_TESTS_PROPERTIES (H5JAM-CHECKFILE-${testname}-clear-objects PROPERTIES DEPENDS ${last_test})
ENDIF (NOT "${last_test}" STREQUAL "")
ADD_TEST (
- NAME H5JAM-CHECKFILE-H5DUMP-${testname}
+ NAME H5JAM-CHECKFILE-H5DMP-${testname}
COMMAND "${CMAKE_COMMAND}"
-D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
-D "TEST_ARGS:STRING=testfiles/${expected}"
@@ -130,9 +130,9 @@ IF (BUILD_TESTING)
-D "TEST_SKIP_COMPARE=TRUE"
-P "${HDF5_RESOURCES_DIR}/runTest.cmake"
)
- SET_TESTS_PROPERTIES (H5JAM-CHECKFILE-H5DUMP-${testname} PROPERTIES DEPENDS H5JAM-CHECKFILE-${testname}-clear-objects)
+ SET_TESTS_PROPERTIES (H5JAM-CHECKFILE-H5DMP-${testname} PROPERTIES DEPENDS H5JAM-CHECKFILE-${testname}-clear-objects)
ADD_TEST (
- NAME H5JAM-CHECKFILE-H5DUMP_CMP-${testname}
+ NAME H5JAM-CHECKFILE-H5DMP_CMP-${testname}
COMMAND "${CMAKE_COMMAND}"
-D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
-D "TEST_ARGS:STRING=${actual}"
@@ -143,8 +143,8 @@ IF (BUILD_TESTING)
-D "TEST_REFERENCE=${expected}.new"
-P "${HDF5_RESOURCES_DIR}/runTest.cmake"
)
- SET_TESTS_PROPERTIES (H5JAM-CHECKFILE-H5DUMP_CMP-${testname} PROPERTIES DEPENDS H5JAM-CHECKFILE-H5DUMP-${testname})
- SET (last_test "H5JAM-CHECKFILE-H5DUMP_CMP-${testname}")
+ SET_TESTS_PROPERTIES (H5JAM-CHECKFILE-H5DMP_CMP-${testname} PROPERTIES DEPENDS H5JAM-CHECKFILE-H5DMP-${testname})
+ SET (last_test "H5JAM-CHECKFILE-H5DMP_CMP-${testname}")
ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
ENDMACRO(CHECKFILE testname expected actual)
diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c
index a712794..3d96bed 100644
--- a/tools/lib/h5tools.c
+++ b/tools/lib/h5tools.c
@@ -42,11 +42,9 @@ FILE *rawdatastream; /* should initialize to stdout but gcc moans about it
int bin_output; /* binary output */
int bin_form; /* binary form */
int region_output; /* region output */
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
int packed_bits_num; /* number of packed bits to display */
int packed_data_offset; /* offset of packed bits to display */
unsigned long long packed_data_mask; /* mask in which packed bits to display */
-#endif
static h5tool_format_t h5tools_dataformat = {
0, /*raw */
@@ -4349,23 +4347,23 @@ hbool_t h5tools_is_zero(const void *_mem, size_t size)
*-------------------------------------------------------------------------
*/
hbool_t h5tools_is_obj_same(hid_t loc_id1, const char *name1,
- hid_t loc_id2, const char *name2)
+ hid_t loc_id2, const char *name2)
{
H5O_info_t oinfo1, oinfo2;
hbool_t ret_val = 0;
if ( name1 && strcmp(name1, "."))
- H5Oget_info_by_name(loc_id1, name1, &oinfo1, H5P_DEFAULT);
+ H5Oget_info_by_name(loc_id1, name1, &oinfo1, H5P_DEFAULT);
else
- H5Oget_info(loc_id1, &oinfo1);
+ H5Oget_info(loc_id1, &oinfo1);
if ( name2 && strcmp(name2, "."))
- H5Oget_info_by_name(loc_id2, name2, &oinfo2, H5P_DEFAULT);
+ H5Oget_info_by_name(loc_id2, name2, &oinfo2, H5P_DEFAULT);
else
- H5Oget_info(loc_id2, &oinfo2);
+ H5Oget_info(loc_id2, &oinfo2);
if (oinfo1.fileno == oinfo2.fileno && oinfo1.addr==oinfo2.addr)
- ret_val = 1;
+ ret_val = 1;
return ret_val;
}
diff --git a/tools/lib/h5tools.h b/tools/lib/h5tools.h
index 448a20c..1b2014a 100644
--- a/tools/lib/h5tools.h
+++ b/tools/lib/h5tools.h
@@ -530,12 +530,9 @@ struct subset_t {
extern "C" {
#endif
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
H5TOOLS_DLLVAR int packed_bits_num; /* number of packed bits to display */
H5TOOLS_DLLVAR int packed_data_offset; /* offset of packed bits to display */
H5TOOLS_DLLVAR unsigned long long packed_data_mask; /* mask in which packed bits to display */
-#endif
-
H5TOOLS_DLLVAR FILE *rawdatastream; /* output stream for raw data */
H5TOOLS_DLLVAR int bin_output; /* binary output */
H5TOOLS_DLLVAR int bin_form; /* binary form */
diff --git a/tools/lib/h5tools_str.c b/tools/lib/h5tools_str.c
index 7630e9a..ed13ac4 100644
--- a/tools/lib/h5tools_str.c
+++ b/tools/lib/h5tools_str.c
@@ -795,98 +795,78 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai
}
else if (H5Tequal(type, H5T_NATIVE_INT)) {
HDmemcpy(&tempint, vp, sizeof(int));
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
if(packed_bits_num) {
tempint = (tempint >> packed_data_offset) & packed_data_mask;
}
-#endif
h5tools_str_append(str, OPT(info->fmt_int, "%d"), tempint);
}
else if (H5Tequal(type, H5T_NATIVE_UINT)) {
HDmemcpy(&tempuint, vp, sizeof(unsigned int));
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
if(packed_bits_num) {
tempuint = (tempuint >> packed_data_offset) & packed_data_mask;
}
-#endif
h5tools_str_append(str, OPT(info->fmt_uint, "%u"), tempuint);
}
else if (H5Tequal(type, H5T_NATIVE_SCHAR)) {
char tempchar;
HDmemcpy(&tempchar, cp_vp, sizeof(char));
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
if(packed_bits_num) {
tempchar = (tempchar >> packed_data_offset) & packed_data_mask;
}
-#endif
h5tools_str_append(str, OPT(info->fmt_schar, "%hhd"), tempchar);
}
else if (H5Tequal(type, H5T_NATIVE_UCHAR)) {
unsigned char tempuchar;
HDmemcpy(&tempuchar, ucp_vp, sizeof(unsigned char));
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
if(packed_bits_num) {
tempuchar = (tempuchar >> packed_data_offset) & packed_data_mask;
}
-#endif
h5tools_str_append(str, OPT(info->fmt_uchar, "%u"), tempuchar);
}
else if (H5Tequal(type, H5T_NATIVE_SHORT)) {
short tempshort;
HDmemcpy(&tempshort, vp, sizeof(short));
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
if(packed_bits_num) {
tempshort = (tempshort >> packed_data_offset) & packed_data_mask;
}
-#endif
h5tools_str_append(str, OPT(info->fmt_short, "%d"), tempshort);
}
else if (H5Tequal(type, H5T_NATIVE_USHORT)) {
unsigned short tempushort;
HDmemcpy(&tempushort, vp, sizeof(unsigned short));
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
if(packed_bits_num) {
tempushort = (tempushort >> packed_data_offset) & packed_data_mask;
}
-#endif
h5tools_str_append(str, OPT(info->fmt_ushort, "%u"), tempushort);
}
else if (H5Tequal(type, H5T_NATIVE_LONG)) {
HDmemcpy(&templong, vp, sizeof(long));
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
if(packed_bits_num) {
templong = (templong >> packed_data_offset) & packed_data_mask;
}
-#endif
h5tools_str_append(str, OPT(info->fmt_long, "%ld"), templong);
}
else if (H5Tequal(type, H5T_NATIVE_ULONG)) {
HDmemcpy(&tempulong, vp, sizeof(unsigned long));
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
if(packed_bits_num) {
tempulong = (tempulong >> packed_data_offset) & packed_data_mask;
}
-#endif
h5tools_str_append(str, OPT(info->fmt_ulong, "%lu"), tempulong);
}
else if (H5Tequal(type, H5T_NATIVE_LLONG)) {
HDmemcpy(&templlong, vp, sizeof(long long));
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
if(packed_bits_num) {
templlong = (templlong >> packed_data_offset) & packed_data_mask;
}
-#endif
h5tools_str_append(str, OPT(info->fmt_llong, fmt_llong), templlong);
}
else if (H5Tequal(type, H5T_NATIVE_ULLONG)) {
HDmemcpy(&tempullong, vp, sizeof(unsigned long long));
-#ifdef H5_HAVE_H5DUMP_PACKED_BITS
if(packed_bits_num) {
tempullong = (tempullong >> packed_data_offset) & packed_data_mask;
}
-#endif
h5tools_str_append(str, OPT(info->fmt_ullong, fmt_ullong), tempullong);
}
else if (H5Tequal(type, H5T_NATIVE_HSSIZE)) {
diff --git a/tools/testfiles/tnofilename-with-packed-bits.ddl b/tools/testfiles/tnofilename-with-packed-bits.ddl
index 310327e..9225b09 100644
--- a/tools/testfiles/tnofilename-with-packed-bits.ddl
+++ b/tools/testfiles/tnofilename-with-packed-bits.ddl
@@ -80,7 +80,7 @@ usage: h5dump [OPTIONS] file
1) Attribute foo of the group /bar_none in file quux.h5
- h5dump -a /bar_none/foo quux.h5
+ h5dump -a /bar_none/foo quux.h5
2) Selecting a subset from dataset /foo in file quux.h5
diff --git a/tools/testfiles/tpbitsIncomplete.ddl b/tools/testfiles/tpbitsIncomplete.ddl
index fca66e5..c60a897 100644
--- a/tools/testfiles/tpbitsIncomplete.ddl
+++ b/tools/testfiles/tpbitsIncomplete.ddl
@@ -80,7 +80,7 @@ usage: h5dump [OPTIONS] file
1) Attribute foo of the group /bar_none in file quux.h5
- h5dump -a /bar_none/foo quux.h5
+ h5dump -a /bar_none/foo quux.h5
2) Selecting a subset from dataset /foo in file quux.h5
diff --git a/tools/testfiles/tpbitsLengthExceeded.ddl b/tools/testfiles/tpbitsLengthExceeded.ddl
index f9a4413..cbc6177 100644
--- a/tools/testfiles/tpbitsLengthExceeded.ddl
+++ b/tools/testfiles/tpbitsLengthExceeded.ddl
@@ -80,7 +80,7 @@ usage: h5dump [OPTIONS] file
1) Attribute foo of the group /bar_none in file quux.h5
- h5dump -a /bar_none/foo quux.h5
+ h5dump -a /bar_none/foo quux.h5
2) Selecting a subset from dataset /foo in file quux.h5
diff --git a/tools/testfiles/tpbitsLengthPositive.ddl b/tools/testfiles/tpbitsLengthPositive.ddl
index ee9916b..e64f6d8 100644
--- a/tools/testfiles/tpbitsLengthPositive.ddl
+++ b/tools/testfiles/tpbitsLengthPositive.ddl
@@ -80,7 +80,7 @@ usage: h5dump [OPTIONS] file
1) Attribute foo of the group /bar_none in file quux.h5
- h5dump -a /bar_none/foo quux.h5
+ h5dump -a /bar_none/foo quux.h5
2) Selecting a subset from dataset /foo in file quux.h5
diff --git a/tools/testfiles/tpbitsMaxExceeded.ddl b/tools/testfiles/tpbitsMaxExceeded.ddl
index 7a1c0fe..8c9bf8e 100644
--- a/tools/testfiles/tpbitsMaxExceeded.ddl
+++ b/tools/testfiles/tpbitsMaxExceeded.ddl
@@ -80,7 +80,7 @@ usage: h5dump [OPTIONS] file
1) Attribute foo of the group /bar_none in file quux.h5
- h5dump -a /bar_none/foo quux.h5
+ h5dump -a /bar_none/foo quux.h5
2) Selecting a subset from dataset /foo in file quux.h5
diff --git a/tools/testfiles/tpbitsOffsetExceeded.ddl b/tools/testfiles/tpbitsOffsetExceeded.ddl
index 3d7bb56..a200446 100644
--- a/tools/testfiles/tpbitsOffsetExceeded.ddl
+++ b/tools/testfiles/tpbitsOffsetExceeded.ddl
@@ -80,7 +80,7 @@ usage: h5dump [OPTIONS] file
1) Attribute foo of the group /bar_none in file quux.h5
- h5dump -a /bar_none/foo quux.h5
+ h5dump -a /bar_none/foo quux.h5
2) Selecting a subset from dataset /foo in file quux.h5
diff --git a/tools/testfiles/tpbitsOffsetNegative.ddl b/tools/testfiles/tpbitsOffsetNegative.ddl
index a4fc444..cd00ebb 100644
--- a/tools/testfiles/tpbitsOffsetNegative.ddl
+++ b/tools/testfiles/tpbitsOffsetNegative.ddl
@@ -80,7 +80,7 @@ usage: h5dump [OPTIONS] file
1) Attribute foo of the group /bar_none in file quux.h5
- h5dump -a /bar_none/foo quux.h5
+ h5dump -a /bar_none/foo quux.h5
2) Selecting a subset from dataset /foo in file quux.h5
generated by cgit v0.12 at 2024-11-17 00:34:06 (GMT)