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-rw-r--r--tools/h5dump/CMakeTestsVDS.cmake28
-rw-r--r--tools/h5dump/h5dump.c16
-rw-r--r--tools/h5dump/h5dump.h2
-rw-r--r--tools/h5dump/h5dump_ddl.c306
-rw-r--r--tools/h5dump/h5dump_extern.h2
-rw-r--r--tools/h5dump/testh5dumpvds.sh.in18
-rw-r--r--tools/h5repack/CMakeLists.txt6
-rw-r--r--tools/lib/CMakeLists.txt2
-rw-r--r--tools/testfiles/h5dump-help.txt2
-rw-r--r--tools/testfiles/pbits/tnofilename-with-packed-bits.ddl2
-rw-r--r--tools/testfiles/pbits/tpbitsIncomplete.ddl2
-rw-r--r--tools/testfiles/pbits/tpbitsLengthExceeded.ddl2
-rw-r--r--tools/testfiles/pbits/tpbitsLengthPositive.ddl2
-rw-r--r--tools/testfiles/pbits/tpbitsMaxExceeded.ddl2
-rw-r--r--tools/testfiles/pbits/tpbitsOffsetExceeded.ddl2
-rw-r--r--tools/testfiles/pbits/tpbitsOffsetNegative.ddl2
-rw-r--r--tools/testfiles/vds/a.h5bin0 -> 7736 bytes
-rw-r--r--tools/testfiles/vds/b.h5bin0 -> 7736 bytes
-rw-r--r--tools/testfiles/vds/c.h5bin0 -> 7736 bytes
-rw-r--r--tools/testfiles/vds/d.h5bin0 -> 7736 bytes
-rw-r--r--tools/testfiles/vds/f-0.h5bin0 -> 4144 bytes
-rw-r--r--tools/testfiles/vds/f-3.h5bin0 -> 4144 bytes
-rw-r--r--tools/testfiles/vds/vds-eiger.h5bin0 -> 5496 bytes
-rw-r--r--tools/testfiles/vds/vds-first.ddl210
-rw-r--r--tools/testfiles/vds/vds-gap1.ddl58
-rw-r--r--tools/testfiles/vds/vds-gap2.ddl210
-rw-r--r--tools/testfiles/vds/vds-percival-unlim-maxmin.h5bin0 -> 5496 bytes
-rw-r--r--tools/testfiles/vds/vds_layout-eiger.ddl87
-rw-r--r--tools/testfiles/vds/vds_layout-maxmin.ddl422
29 files changed, 1244 insertions, 139 deletions
diff --git a/tools/h5dump/CMakeTestsVDS.cmake b/tools/h5dump/CMakeTestsVDS.cmake
index 58287fa..cc68896 100644
--- a/tools/h5dump/CMakeTestsVDS.cmake
+++ b/tools/h5dump/CMakeTestsVDS.cmake
@@ -22,6 +22,11 @@
tvds_layout-3_2.ddl
tvds_layout-4.ddl
tvds_layout-5.ddl
+ vds-first.ddl
+ vds-gap1.ddl
+ vds-gap2.ddl
+ vds_layout-eiger.ddl
+ vds_layout-maxmin.ddl
)
set (HDF5_REFERENCE_TEST_VDS
1_a.h5
@@ -47,6 +52,14 @@
5_b.h5
5_c.h5
5_vds.h5
+ a.h5
+ b.h5
+ c.h5
+ d.h5
+ vds-percival-unlim-maxmin.h5
+ f-0.h5
+ f-3.h5
+ vds-eiger.h5
)
set (HDF5_ERROR_REFERENCE_VDS
)
@@ -184,6 +197,12 @@
tvds-4.out.err
tvds-5.out
tvds-5.out.err
+ vds-first.out
+ vds-first.out.err
+ vds-gap1.out
+ vds-gap1.out.err
+ vds-gap2.out
+ vds-gap2.out.err
tvds_layout-1.out
tvds_layout-1.out.err
tvds_layout-2.out
@@ -196,6 +215,10 @@
tvds_layout-4.out.err
tvds_layout-5.out
tvds_layout-5.out.err
+ vds_layout-eiger.out
+ vds_layout-eiger.out.err
+ vds_layout-maxmin.out
+ vds_layout-maxmin.out.err
)
set_tests_properties (H5DUMP_VDS-clearall-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/vds")
if (NOT "${last_vds_test}" STREQUAL "")
@@ -225,6 +248,9 @@
ADD_H5_VDS_TEST (tvds-3_2 0 --enable-error-stack 3_2_vds.h5)
ADD_H5_VDS_TEST (tvds-4 0 --enable-error-stack 4_vds.h5)
ADD_H5_VDS_TEST (tvds-5 0 --enable-error-stack 5_vds.h5)
+ ADD_H5_VDS_TEST (vds-first 0 --vds-view-first-missing --enable-error-stack vds-percival-unlim-maxmin.h5)
+ ADD_H5_VDS_TEST (vds-gap1 0 -d /VDS-Eiger --vds-gap-size=1 --enable-error-stack vds-eiger.h5)
+ ADD_H5_VDS_TEST (vds-gap2 0 --vds-gap-size=2 --enable-error-stack vds-eiger.h5)
endif (USE_FILTER_DEFLATE)
# Layout read
@@ -235,4 +261,6 @@
ADD_H5_VDS_LAYOUT (tvds_layout-3_2 0 --enable-error-stack 3_2_vds.h5)
ADD_H5_VDS_LAYOUT (tvds_layout-4 0 --enable-error-stack 4_vds.h5)
ADD_H5_VDS_LAYOUT (tvds_layout-5 0 --enable-error-stack 5_vds.h5)
+ ADD_H5_VDS_LAYOUT (vds_layout-eiger 0 --enable-error-stack vds-eiger.h5)
+ ADD_H5_VDS_LAYOUT (vds_layout-maxmin 0 --enable-error-stack vds-percival-unlim-maxmin.h5)
endif (USE_FILTER_DEFLATE)
diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c
index ffba581..7c24fa4 100644
--- a/tools/h5dump/h5dump.c
+++ b/tools/h5dump/h5dump.c
@@ -71,7 +71,7 @@ struct handler_t {
*/
/* The following initialization makes use of C language cancatenating */
/* "xxx" "yyy" into "xxxyyy". */
-static const char *s_opts = "hn*peyBHirVa:c:d:f:g:k:l:t:w:xD:uX:o*b*F:s:S:A*q:z:m:RECM:O*N:";
+static const char *s_opts = "hn*peyBHirVa:c:d:f:g:k:l:t:w:xD:uX:o*b*F:s:S:A*q:z:m:RECM:O*N:vG:";
static struct long_options l_opts[] = {
{ "help", no_arg, 'h' },
{ "hel", no_arg, 'h' },
@@ -190,6 +190,8 @@ static struct long_options l_opts[] = {
{ "no-compact-subset", no_arg, 'C' },
{ "ddl", optional_arg, 'O' },
{ "any_path", require_arg, 'N' },
+ { "vds-view-first-missing", no_arg, 'v' },
+ { "vds-gap-size", require_arg, 'G' },
{ NULL, 0, '\0' }
};
@@ -256,6 +258,8 @@ usage(const char *prog)
PRINTVALSTREAM(rawoutstream, " P can be the absolute path or just a relative path.\n");
PRINTVALSTREAM(rawoutstream, " -A, --onlyattr Print the header and value of attributes\n");
PRINTVALSTREAM(rawoutstream, " Optional value 0 suppresses printing attributes.\n");
+ PRINTVALSTREAM(rawoutstream, " --vds-view-first-missing Set the VDS bounds to first missing mapped elements.\n");
+ PRINTVALSTREAM(rawoutstream, " --vds-gap-size=N Set the missing file gap size, N=non-negative integers\n");
PRINTVALSTREAM(rawoutstream, "--------------- Object Property Options ---------------\n");
PRINTVALSTREAM(rawoutstream, " -i, --object-ids Print the object ids\n");
PRINTVALSTREAM(rawoutstream, " -p, --properties Print dataset filters, storage layout and fill value\n");
@@ -1121,6 +1125,16 @@ parse_start:
}
display_packed_bits = TRUE;
break;
+ case 'v':
+ display_vds_first = TRUE;
+ break;
+ case 'G':
+ vds_gap_size = HDatoi(opt_arg);
+ if (vds_gap_size < 0) {
+ usage(h5tools_getprogname());
+ goto error;
+ }
+ break;
/** begin XML parameters **/
case 'x':
diff --git a/tools/h5dump/h5dump.h b/tools/h5dump/h5dump.h
index 2b1fb04..7cf4efd 100644
--- a/tools/h5dump/h5dump.h
+++ b/tools/h5dump/h5dump.h
@@ -78,6 +78,8 @@ int enable_error_stack= FALSE; /* re-enable error stack */
int disable_compact_subset= FALSE; /* disable compact form of subset notation */
int display_packed_bits = FALSE; /*print 1-8 byte numbers as packed bits*/
int include_attrs = TRUE; /* Display attributes */
+int display_vds_first = FALSE; /* vds display to all by default*/
+int vds_gap_size = 0; /* vds skip missing files default is none */
/* sort parameters */
H5_index_t sort_by = H5_INDEX_NAME; /*sort_by [creation_order | name] */
diff --git a/tools/h5dump/h5dump_ddl.c b/tools/h5dump/h5dump_ddl.c
index fd50710..09751ab 100644
--- a/tools/h5dump/h5dump_ddl.c
+++ b/tools/h5dump/h5dump_ddl.c
@@ -26,12 +26,12 @@
typedef struct {
hid_t fid; /* File ID being traversed */
- char *op_name; /* Object name wanted */
+ char *op_name; /* Object name wanted */
} trav_handle_udata_t;
typedef struct {
- char *path; /* Path of object being searched */
- char *op_name; /* Object name wanted */
+ char *path; /* Path of object being searched */
+ char *op_name; /* Object name wanted */
} trav_attr_udata_t;
/* callback function used by H5Literate() */
@@ -90,7 +90,7 @@ dump_dataspace(hid_t space)
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent/COL;
ctx.cur_column = dump_indent;
-
+
h5tools_dump_dataspace(rawoutstream, outputformat, &ctx, space);
}
@@ -117,19 +117,19 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *
h5tools_context_t ctx; /* print context */
h5tool_format_t *outputformat = &h5tools_dataformat;
h5tool_format_t string_dataformat;
-
+
hid_t attr_id;
herr_t ret = SUCCEED;
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent/COL;
ctx.cur_column = dump_indent;
-
+
attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT);
oid_output = display_oid;
data_output = display_data;
attr_data_output = display_attr_data;
-
+
string_dataformat = *outputformat;
if (fp_format) {
@@ -155,7 +155,7 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *
h5tools_setstatus(EXIT_FAILURE);
ret = FAIL;
}
-
+
return ret;
}
@@ -185,6 +185,7 @@ static herr_t
dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR_UNUSED *op_data)
{
hid_t obj;
+ hid_t dapl_id = H5P_DEFAULT; /* dataset access property list ID */
herr_t ret = SUCCEED;
char *obj_path = NULL; /* Full path of object */
h5tools_str_t buffer; /* string into which to render */
@@ -199,7 +200,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent/COL;
ctx.cur_column = dump_indent;
-
+
string_dataformat = *outputformat;
if (fp_format) {
@@ -222,8 +223,8 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
if(!obj_path) {
ret = FAIL;
goto done;
- }
-
+ }
+
HDstrcpy(obj_path, prefix);
HDstrcat(obj_path, "/");
HDstrcat(obj_path, name);
@@ -269,7 +270,20 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
break;
case H5O_TYPE_DATASET:
- if((obj = H5Dopen2(group, name, H5P_DEFAULT)) >= 0) {
+ if(display_data) {
+ if ((dapl_id = H5Pcreate(H5P_DATASET_ACCESS)) < 0) {
+ error_msg("error in creating default access property list ID\n");
+ }
+ if (display_vds_first) {
+ if(H5Pset_virtual_view(dapl_id, H5D_VDS_FIRST_MISSING) < 0)
+ error_msg("error in setting access property list ID, virtual_view\n");
+ }
+ if (vds_gap_size > 0) {
+ if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)vds_gap_size) < 0)
+ error_msg("error in setting access property list ID, virtual_printf_gap\n");
+ }
+ }
+ if((obj = H5Dopen2(group, name, dapl_id)) >= 0) {
if(oinfo.rc > 1 || hit_elink) {
obj_t *found_obj; /* Found object */
@@ -308,9 +322,11 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
h5tools_setstatus(EXIT_FAILURE);
ret = FAIL;
+ if (dapl_id != H5P_DEFAULT)
+ H5Pclose(dapl_id);
H5Dclose(obj);
goto done;
- }
+ }
else if(found_obj->displayed) {
ctx.need_prefix = TRUE;
h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0);
@@ -347,18 +363,24 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datasetend);
h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0);
+ if (dapl_id != H5P_DEFAULT)
+ H5Pclose(dapl_id);
H5Dclose(obj);
goto done;
- }
+ }
else {
found_obj->displayed = TRUE;
}
} /* end if */
dump_function_table->dump_dataset_function(obj, name, NULL);
+ if (dapl_id != H5P_DEFAULT)
+ H5Pclose(dapl_id);
H5Dclose(obj);
- }
+ }
else {
+ if (dapl_id)
+ H5Pclose(dapl_id && dapl_id != H5P_DEFAULT);
error_msg("unable to dump dataset \"%s\"\n", name);
h5tools_setstatus(EXIT_FAILURE);
ret = FAIL;
@@ -370,7 +392,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
error_msg("unable to dump datatype \"%s\"\n", name);
h5tools_setstatus(EXIT_FAILURE);
ret = FAIL;
- }
+ }
else {
dump_function_table->dump_named_datatype_function(obj, name);
H5Tclose(obj);
@@ -408,7 +430,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
error_msg("unable to get link value\n");
h5tools_setstatus(EXIT_FAILURE);
ret = FAIL;
- }
+ }
else {
/* print the value of a soft link */
/* Standard DDL: no modification */
@@ -558,7 +580,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR
done:
h5tools_str_close(&buffer);
-
+
if(obj_path)
HDfree(obj_path);
return ret;
@@ -650,7 +672,7 @@ dump_named_datatype(hid_t tid, const char *name)
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent/COL;
ctx.cur_column = dump_indent;
-
+
string_dataformat = *outputformat;
if (fp_format) {
@@ -685,7 +707,7 @@ dump_named_datatype(hid_t tid, const char *name)
}
ctx.need_prefix = TRUE;
-
+
/* Render the element */
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s \"%s\" %s",
@@ -718,7 +740,7 @@ dump_named_datatype(hid_t tid, const char *name)
else
found_obj->displayed = TRUE;
} /* end if */
-
+
/* Render the element */
h5tools_str_reset(&buffer);
h5tools_print_datatype(rawoutstream, &buffer, outputformat, &ctx, tid, FALSE);
@@ -726,7 +748,7 @@ dump_named_datatype(hid_t tid, const char *name)
if(H5Tget_class(tid) != H5T_COMPOUND) {
h5tools_str_append(&buffer, ";");
}
-
+
h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0);
/* print attributes */
@@ -813,7 +835,7 @@ dump_group(hid_t gid, const char *name)
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent/COL;
ctx.cur_column = dump_indent;
-
+
string_dataformat = *outputformat;
if (fp_format) {
@@ -839,7 +861,7 @@ dump_group(hid_t gid, const char *name)
h5tools_dump_header_format->groupbegin, name,
h5tools_dump_header_format->groupblockbegin);
h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0);
-
+
ctx.indent_level++;
dump_indent += COL;
@@ -948,7 +970,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
HDmemset(&ctx, 0, sizeof(ctx));
ctx.indent_level = dump_indent/COL;
ctx.cur_column = dump_indent;
-
+
string_dataformat = *outputformat;
if (fp_format) {
@@ -982,7 +1004,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
ctx.need_prefix = TRUE;
h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0);
-
+
/* Render the element */
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "%s \"%s\" %s",
@@ -994,7 +1016,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
dump_indent += COL;
ctx.indent_level++;
-
+
type = H5Dget_type(did);
h5dump_type_table = type_table;
h5tools_dump_datatype(rawoutstream, outputformat, &ctx, type);
@@ -1018,6 +1040,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
if(display_data) {
int data_loop = 1;
int i;
+
if(display_packed_bits)
data_loop = packed_bits_num;
for(i=0; i<data_loop; i++) {
@@ -1042,7 +1065,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
h5tools_str_reset(&buffer);
h5tools_str_append(&buffer, "DATA{ not yet implemented.}");
h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0);
-
+
ctx.indent_level--;
break;
@@ -1079,7 +1102,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset)
ctx.need_prefix = TRUE;
h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0);
-
+
/* Render the element */
h5tools_str_reset(&buffer);
if(HDstrlen(h5tools_dump_header_format->datasetblockend)) {
@@ -1189,7 +1212,7 @@ dump_fcpl(hid_t fid)
fdriver=H5Pget_driver(fapl);
H5Pclose(fapl);
#endif
-
+
/*-------------------------------------------------------------------------
* SUPER_BLOCK
*-------------------------------------------------------------------------
@@ -1308,54 +1331,54 @@ static herr_t
attr_search(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *ainfo, void *_op_data)
{
herr_t ret = SUCCEED;
- int i;
- int j;
- int k;
- char *obj_op_name;
+ int i;
+ int j;
+ int k;
+ char *obj_op_name;
char *obj_name;
- trav_attr_udata_t *attr_data = (trav_attr_udata_t*)_op_data;
+ trav_attr_udata_t *attr_data = (trav_attr_udata_t*)_op_data;
char *buf = attr_data->path;
- char *op_name = attr_data->op_name;
+ char *op_name = attr_data->op_name;
j = (int)HDstrlen(op_name) - 1;
/* find the last / */
while(j >= 0) {
- if (op_name[j] == '/' && (j==0 || (j>0 && op_name[j-1]!='\\')))
- break;
- j--;
+ if (op_name[j] == '/' && (j==0 || (j>0 && op_name[j-1]!='\\')))
+ break;
+ j--;
}
obj_op_name = h5tools_str_replace(op_name + j + 1, "\\/", "/");
if(obj_op_name == NULL) {
- h5tools_setstatus(EXIT_FAILURE);
- ret = FAIL;
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
}
else {
- if(HDstrcmp(attr_name, obj_op_name)==0) {
- /* object name */
- i = (int)HDstrlen(buf);
- j = (int)HDstrlen(op_name);
- k = (size_t)i + 1 + (size_t)j + 1 + 2;
- obj_name = (char *)HDmalloc((size_t)k);
- if(obj_name == NULL) {
- h5tools_setstatus(EXIT_FAILURE);
- ret = FAIL;
- }
- else {
- HDmemset(obj_name, '\0', (size_t)k);
- if(op_name[0] != '/') {
- HDstrncat(obj_name, buf, (size_t)i + 1);
- if(buf[i-1] != '/')
- HDstrncat(obj_name, "/", (size_t)2);
- }
- HDstrncat(obj_name, op_name, (size_t)j + 1);
-
- handle_attributes(oid, obj_name, NULL, 0, NULL);
- HDfree(obj_name);
- }
- }
- HDfree(obj_op_name);
+ if(HDstrcmp(attr_name, obj_op_name)==0) {
+ /* object name */
+ i = (int)HDstrlen(buf);
+ j = (int)HDstrlen(op_name);
+ k = (size_t)i + 1 + (size_t)j + 1 + 2;
+ obj_name = (char *)HDmalloc((size_t)k);
+ if(obj_name == NULL) {
+ h5tools_setstatus(EXIT_FAILURE);
+ ret = FAIL;
+ }
+ else {
+ HDmemset(obj_name, '\0', (size_t)k);
+ if(op_name[0] != '/') {
+ HDstrncat(obj_name, buf, (size_t)i + 1);
+ if(buf[i-1] != '/')
+ HDstrncat(obj_name, "/", (size_t)2);
+ }
+ HDstrncat(obj_name, op_name, (size_t)j + 1);
+
+ handle_attributes(oid, obj_name, NULL, 0, NULL);
+ HDfree(obj_name);
+ }
+ }
+ HDfree(obj_op_name);
}
return ret;
} /* end attr_search() */
@@ -1363,7 +1386,7 @@ attr_search(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *a
static herr_t
obj_search(const char *path, const H5O_info_t *oi, const char H5_ATTR_UNUSED *already_visited, void *_op_data)
{
- trav_handle_udata_t *handle_data = (trav_handle_udata_t*)_op_data;
+ trav_handle_udata_t *handle_data = (trav_handle_udata_t*)_op_data;
char *op_name = (char*)handle_data->op_name;
trav_attr_udata_t attr_data;
@@ -1372,22 +1395,22 @@ obj_search(const char *path, const H5O_info_t *oi, const char H5_ATTR_UNUSED *al
H5Aiterate_by_name(handle_data->fid, path, H5_INDEX_NAME, H5_ITER_INC, NULL, attr_search, (void*)&attr_data, H5P_DEFAULT);
if(HDstrcmp(path, op_name)==0) {
- switch(oi->type) {
- case H5O_TYPE_GROUP:
- handle_groups(handle_data->fid, path, NULL, 0, NULL);
- break;
- case H5O_TYPE_DATASET:
- handle_datasets(handle_data->fid, path, NULL, 0, NULL);
- break;
- case H5O_TYPE_NAMED_DATATYPE:
- handle_datatypes(handle_data->fid, path, NULL, 0, NULL);
- break;
- case H5O_TYPE_UNKNOWN:
- case H5O_TYPE_NTYPES:
- default:
- error_msg("unknown object type value\n");
- h5tools_setstatus(EXIT_FAILURE);
- } /* end switch */
+ switch(oi->type) {
+ case H5O_TYPE_GROUP:
+ handle_groups(handle_data->fid, path, NULL, 0, NULL);
+ break;
+ case H5O_TYPE_DATASET:
+ handle_datasets(handle_data->fid, path, NULL, 0, NULL);
+ break;
+ case H5O_TYPE_NAMED_DATATYPE:
+ handle_datatypes(handle_data->fid, path, NULL, 0, NULL);
+ break;
+ case H5O_TYPE_UNKNOWN:
+ case H5O_TYPE_NTYPES:
+ default:
+ error_msg("unknown object type value\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ } /* end switch */
}
return 0;
@@ -1397,48 +1420,48 @@ static herr_t
lnk_search(const char *path, const H5L_info_t *li, void *_op_data)
{
int search_len;
- int k;
+ int k;
char *search_name;
- trav_handle_udata_t *handle_data = (trav_handle_udata_t*)_op_data;
+ trav_handle_udata_t *handle_data = (trav_handle_udata_t*)_op_data;
char *op_name = (char*)handle_data->op_name;
search_len = HDstrlen(op_name);
if(search_len > 0 && op_name[0] != '/') {
- k = 2;
+ k = 2;
}
else
k = 1;
- search_name = (char *)HDmalloc((size_t)(search_len + k));
+ search_name = (char *)HDmalloc((size_t)(search_len + k));
if(search_name == NULL) {
- error_msg("creating temporary link\n");
- h5tools_setstatus(EXIT_FAILURE);
+ error_msg("creating temporary link\n");
+ h5tools_setstatus(EXIT_FAILURE);
}
else {
- if (k == 2) {
- HDstrcpy(search_name, "/");
- HDstrncat(search_name, op_name, (size_t)search_len + 1);
- }
- else
- HDstrncpy(search_name, op_name, (size_t)search_len + 1);
- search_name[search_len + k - 1] = '\0';
-
- if(HDstrcmp(path, search_name) == 0) {
- switch(li->type) {
- case H5L_TYPE_SOFT:
- case H5L_TYPE_EXTERNAL:
- handle_links(handle_data->fid, op_name, NULL, 0, NULL);
- break;
-
- case H5L_TYPE_HARD:
- case H5L_TYPE_MAX:
- case H5L_TYPE_ERROR:
- default:
- error_msg("unknown link type value\n");
- h5tools_setstatus(EXIT_FAILURE);
- break;
- } /* end switch() */
- }
- HDfree(search_name);
+ if (k == 2) {
+ HDstrcpy(search_name, "/");
+ HDstrncat(search_name, op_name, (size_t)search_len + 1);
+ }
+ else
+ HDstrncpy(search_name, op_name, (size_t)search_len + 1);
+ search_name[search_len + k - 1] = '\0';
+
+ if(HDstrcmp(path, search_name) == 0) {
+ switch(li->type) {
+ case H5L_TYPE_SOFT:
+ case H5L_TYPE_EXTERNAL:
+ handle_links(handle_data->fid, op_name, NULL, 0, NULL);
+ break;
+
+ case H5L_TYPE_HARD:
+ case H5L_TYPE_MAX:
+ case H5L_TYPE_ERROR:
+ default:
+ error_msg("unknown link type value\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ break;
+ } /* end switch() */
+ }
+ HDfree(search_name);
}
return 0;
} /* end lnk_search() */
@@ -1465,7 +1488,7 @@ handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H
hid_t gcpl_id;
unsigned crt_order_flags;
unsigned attr_crt_order_flags;
- trav_handle_udata_t handle_udata; /* User data for traversal */
+ trav_handle_udata_t handle_udata; /* User data for traversal */
if ((gcpl_id = H5Gget_create_plist(gid)) < 0) {
error_msg("error in getting group creation property list ID\n");
@@ -1489,12 +1512,12 @@ handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H
h5tools_setstatus(EXIT_FAILURE);
}
- handle_udata.fid = fid;
- handle_udata.op_name = (char*)path_name;
- if(h5trav_visit(fid, "/", TRUE, TRUE, obj_search, lnk_search, &handle_udata) < 0) {
- error_msg("error traversing information\n");
- h5tools_setstatus(EXIT_FAILURE);
- }
+ handle_udata.fid = fid;
+ handle_udata.op_name = (char*)path_name;
+ if(h5trav_visit(fid, "/", TRUE, TRUE, obj_search, lnk_search, &handle_udata) < 0) {
+ error_msg("error traversing information\n");
+ h5tools_setstatus(EXIT_FAILURE);
+ }
}
}
@@ -1536,7 +1559,7 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H
/* find the last / */
while(j >= 0) {
- if (attr[j] == '/' && (j==0 || (j>0 && attr[j-1]!='\\')))
+ if (attr[j] == '/' && (j==0 || (j>0 && attr[j-1]!='\\')))
break;
j--;
}
@@ -1571,7 +1594,7 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H
string_dataformat.do_escape = display_escape;
outputformat = &string_dataformat;
- attr_name = h5tools_str_replace(attr + j + 1, "\\/", "/");
+ attr_name = h5tools_str_replace(attr + j + 1, "\\/", "/");
/* handle error case: cannot open the object with the attribute */
if((oid = H5Oopen(fid, obj_name, H5P_DEFAULT)) < 0) {
@@ -1627,7 +1650,7 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H
} /* end if */
HDfree(obj_name);
- HDfree(attr_name);
+ HDfree(attr_name);
dump_indent -= COL;
return;
@@ -1635,9 +1658,9 @@ error:
h5tools_setstatus(EXIT_FAILURE);
if(obj_name)
HDfree(obj_name);
-
- if (attr_name)
- HDfree(attr_name);
+
+ if (attr_name)
+ HDfree(attr_name);
H5E_BEGIN_TRY {
H5Oclose(oid);
@@ -1672,10 +1695,24 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis
{
H5O_info_t oinfo;
hid_t dsetid;
+ hid_t dapl_id = H5P_DEFAULT; /* dataset access property list ID */
struct subset_t *sset = (struct subset_t *)data;
const char *real_name = display_name ? display_name : dset;
- if((dsetid = H5Dopen2(fid, dset, H5P_DEFAULT)) < 0) {
+ if(display_data) {
+ if ((dapl_id = H5Pcreate(H5P_DATASET_ACCESS)) < 0) {
+ error_msg("error in creating default access property list ID\n");
+ }
+ if (display_vds_first) {
+ if(H5Pset_virtual_view(dapl_id, H5D_VDS_FIRST_MISSING) < 0)
+ error_msg("error in setting access property list ID, virtual_view\n");
+ }
+ if (vds_gap_size > 0) {
+ if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)vds_gap_size) < 0)
+ error_msg("error in setting access property list ID, virtual_printf_gap\n");
+ }
+ }
+ if((dsetid = H5Dopen2(fid, dset, dapl_id)) < 0) {
if (pe) {
handle_links(fid, dset, data, pe, display_name);
}
@@ -1752,7 +1789,7 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis
h5tools_setstatus(EXIT_FAILURE);
return;
}
-
+
/*-------------------------------------------------------------------------
* check for block overlap
*-------------------------------------------------------------------------
@@ -1785,7 +1822,7 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis
PRINTSTREAM(rawoutstream, "%s \"%s\"\n", HARDLINK, found_obj->objname);
indentation(dump_indent);
end_obj(h5tools_dump_header_format->datasetend, h5tools_dump_header_format->datasetblockend);
- }
+ }
else {
found_obj->displayed = TRUE;
dump_indent += COL;
@@ -1801,7 +1838,8 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis
dump_dataset(dsetid, real_name, sset);
dump_indent -= COL;
}
-
+ if (dapl_id != H5P_DEFAULT)
+ H5Pclose(dapl_id);
if(H5Dclose(dsetid) < 0)
h5tools_setstatus(EXIT_FAILURE);
}
@@ -1884,11 +1922,11 @@ handle_links(hid_t fid, const char *links, void H5_ATTR_UNUSED * data, int H5_AT
if(H5Lget_info(fid, links, &linfo, H5P_DEFAULT) < 0) {
error_msg("unable to get link info from \"%s\"\n", links);
h5tools_setstatus(EXIT_FAILURE);
- }
+ }
else if(linfo.type == H5L_TYPE_HARD) {
error_msg("\"%s\" is a hard link\n", links);
h5tools_setstatus(EXIT_FAILURE);
- }
+ }
else {
char *buf = (char *)HDmalloc(linfo.u.val_size);
PRINTVALSTREAM(rawoutstream, "\n");
@@ -1925,12 +1963,12 @@ handle_links(hid_t fid, const char *links, void H5_ATTR_UNUSED * data, int H5_AT
PRINTSTREAM(rawoutstream, "TARGETFILE \"%s\"\n", elink_file);
indentation(COL);
PRINTSTREAM(rawoutstream, "TARGETPATH \"%s\"\n", elink_path);
- }
+ }
else {
error_msg("h5dump error: unable to unpack external link value for \"%s\"\n", links);
h5tools_setstatus(EXIT_FAILURE);
}
- }
+ }
else {
error_msg("h5dump error: unable to get external link value for \"%s\"\n", links);
h5tools_setstatus(EXIT_FAILURE);
diff --git a/tools/h5dump/h5dump_extern.h b/tools/h5dump/h5dump_extern.h
index 08f9e36..62477d0 100644
--- a/tools/h5dump/h5dump_extern.h
+++ b/tools/h5dump/h5dump_extern.h
@@ -77,6 +77,8 @@ extern int enable_error_stack; /* re-enable error stack */
extern int disable_compact_subset; /* disable compact form of subset notation */
extern int display_packed_bits; /*print 1-8 byte numbers as packed bits*/
extern int include_attrs; /* Display attributes */
+extern int display_vds_first; /* vds display to first missing */
+extern int vds_gap_size; /* vds skip missing files */
/* sort parameters */
extern H5_index_t sort_by; /*sort_by [creation_order | name] */
diff --git a/tools/h5dump/testh5dumpvds.sh.in b/tools/h5dump/testh5dumpvds.sh.in
index b15606f..850c03a 100644
--- a/tools/h5dump/testh5dumpvds.sh.in
+++ b/tools/h5dump/testh5dumpvds.sh.in
@@ -98,6 +98,14 @@ $SRC_H5DUMP_TESTFILES/vds/5_a.h5
$SRC_H5DUMP_TESTFILES/vds/5_b.h5
$SRC_H5DUMP_TESTFILES/vds/5_c.h5
$SRC_H5DUMP_TESTFILES/vds/5_vds.h5
+$SRC_H5DUMP_TESTFILES/vds/a.h5
+$SRC_H5DUMP_TESTFILES/vds/b.h5
+$SRC_H5DUMP_TESTFILES/vds/c.h5
+$SRC_H5DUMP_TESTFILES/vds/d.h5
+$SRC_H5DUMP_TESTFILES/vds/vds-percival-unlim-maxmin.h5
+$SRC_H5DUMP_TESTFILES/vds/f-0.h5
+$SRC_H5DUMP_TESTFILES/vds/f-3.h5
+$SRC_H5DUMP_TESTFILES/vds/vds-eiger.h5
"
LIST_OTHER_TEST_FILES="
@@ -113,6 +121,11 @@ $SRC_H5DUMP_TESTFILES/vds/tvds_layout-3_1.ddl
$SRC_H5DUMP_TESTFILES/vds/tvds_layout-3_2.ddl
$SRC_H5DUMP_TESTFILES/vds/tvds_layout-4.ddl
$SRC_H5DUMP_TESTFILES/vds/tvds_layout-5.ddl
+$SRC_H5DUMP_TESTFILES/vds/vds-first.ddl
+$SRC_H5DUMP_TESTFILES/vds/vds-gap1.ddl
+$SRC_H5DUMP_TESTFILES/vds/vds-gap2.ddl
+$SRC_H5DUMP_TESTFILES/vds/vds_layout-eiger.ddl
+$SRC_H5DUMP_TESTFILES/vds/vds_layout-maxmin.ddl
"
LIST_ERROR_TEST_FILES="
@@ -480,6 +493,9 @@ if test $USE_FILTER_DEFLATE = "yes" ; then
TOOLTEST tvds-3_2.ddl --enable-error-stack 3_2_vds.h5
TOOLTEST tvds-4.ddl --enable-error-stack 4_vds.h5
TOOLTEST tvds-5.ddl --enable-error-stack 5_vds.h5
+ TOOLTEST vds-first.ddl --vds-view-first-missing --enable-error-stack vds-percival-unlim-maxmin.h5
+ TOOLTEST vds-gap1.ddl -d /VDS-Eiger --vds-gap-size=1 --enable-error-stack vds-eiger.h5
+ TOOLTEST vds-gap2.ddl --vds-gap-size=2 --enable-error-stack vds-eiger.h5
fi
# Layout read
@@ -490,6 +506,8 @@ if test $USE_FILTER_DEFLATE = "yes" ; then
TOOLTEST tvds_layout-3_2.ddl -p --enable-error-stack 3_2_vds.h5
TOOLTEST tvds_layout-4.ddl -p --enable-error-stack 4_vds.h5
TOOLTEST tvds_layout-5.ddl -p --enable-error-stack 5_vds.h5
+ TOOLTEST vds_layout-eiger.ddl -p --enable-error-stack vds-eiger.h5
+ TOOLTEST vds_layout-maxmin.ddl -p --enable-error-stack vds-percival-unlim-maxmin.h5
fi
# Clean up temporary files/directories
diff --git a/tools/h5repack/CMakeLists.txt b/tools/h5repack/CMakeLists.txt
index 7631ae8..9b1fbcf 100644
--- a/tools/h5repack/CMakeLists.txt
+++ b/tools/h5repack/CMakeLists.txt
@@ -58,7 +58,7 @@ if (BUILD_TESTING)
target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TEST_LIB_TARGET})
H5_SET_LIB_OPTIONS (
${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME}
- SHARED
+ SHARED ${HDF5_PACKAGE_SOVERSION}
HDF5_TOOL_PLUGIN_LIB_NAME_RELEASE
HDF5_TOOL_PLUGIN_LIB_NAME_DEBUG
)
@@ -72,13 +72,13 @@ if (BUILD_TESTING)
TARGET ${HDF5_TOOL_PLUGIN_LIB_TARGET}
POST_BUILD
COMMAND ${CMAKE_COMMAND}
- ARGS -E copy_if_different
+ ARGS -E copy_if_different
"$<TARGET_FILE:${HDF5_TOOL_PLUGIN_LIB_TARGET}>"
"${CMAKE_BINARY_DIR}/plugins/$<TARGET_FILE_NAME:${HDF5_TOOL_PLUGIN_LIB_TARGET}>"
)
include (CMakeTests.cmake)
-
+
endif (BUILD_TESTING)
##############################################################################
diff --git a/tools/lib/CMakeLists.txt b/tools/lib/CMakeLists.txt
index 38c84a2..0b39a2b 100644
--- a/tools/lib/CMakeLists.txt
+++ b/tools/lib/CMakeLists.txt
@@ -61,7 +61,7 @@ if (BUILD_SHARED_LIBS)
set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_TOOLS_LIBSH_TARGET}")
H5_SET_LIB_OPTIONS (
${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_TOOLS_LIB_NAME}
- SHARED
+ SHARED ${HDF5_TOOLS_PACKAGE_SOVERSION}
HDF5_TOOLS_LIB_NAME_RELEASE
HDF5_TOOLS_LIB_NAME_DEBUG
)
diff --git a/tools/testfiles/h5dump-help.txt b/tools/testfiles/h5dump-help.txt
index 444dd97..7ebefc6 100644
--- a/tools/testfiles/h5dump-help.txt
+++ b/tools/testfiles/h5dump-help.txt
@@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files
P can be the absolute path or just a relative path.
-A, --onlyattr Print the header and value of attributes
Optional value 0 suppresses printing attributes.
+ --vds-view-first-missing Set the VDS bounds to first missing mapped elements.
+ --vds-gap-size=N Set the missing file gap size, N=non-negative integers
--------------- Object Property Options ---------------
-i, --object-ids Print the object ids
-p, --properties Print dataset filters, storage layout and fill value
diff --git a/tools/testfiles/pbits/tnofilename-with-packed-bits.ddl b/tools/testfiles/pbits/tnofilename-with-packed-bits.ddl
index 64a2880..1a1b7e8 100644
--- a/tools/testfiles/pbits/tnofilename-with-packed-bits.ddl
+++ b/tools/testfiles/pbits/tnofilename-with-packed-bits.ddl
@@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files
P can be the absolute path or just a relative path.
-A, --onlyattr Print the header and value of attributes
Optional value 0 suppresses printing attributes.
+ --vds-view-first-missing Set the VDS bounds to first missing mapped elements.
+ --vds-gap-size=N Set the missing file gap size, N=non-negative integers
--------------- Object Property Options ---------------
-i, --object-ids Print the object ids
-p, --properties Print dataset filters, storage layout and fill value
diff --git a/tools/testfiles/pbits/tpbitsIncomplete.ddl b/tools/testfiles/pbits/tpbitsIncomplete.ddl
index cdb1f91..2a2778a 100644
--- a/tools/testfiles/pbits/tpbitsIncomplete.ddl
+++ b/tools/testfiles/pbits/tpbitsIncomplete.ddl
@@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files
P can be the absolute path or just a relative path.
-A, --onlyattr Print the header and value of attributes
Optional value 0 suppresses printing attributes.
+ --vds-view-first-missing Set the VDS bounds to first missing mapped elements.
+ --vds-gap-size=N Set the missing file gap size, N=non-negative integers
--------------- Object Property Options ---------------
-i, --object-ids Print the object ids
-p, --properties Print dataset filters, storage layout and fill value
diff --git a/tools/testfiles/pbits/tpbitsLengthExceeded.ddl b/tools/testfiles/pbits/tpbitsLengthExceeded.ddl
index 6d2492a..5e00073 100644
--- a/tools/testfiles/pbits/tpbitsLengthExceeded.ddl
+++ b/tools/testfiles/pbits/tpbitsLengthExceeded.ddl
@@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files
P can be the absolute path or just a relative path.
-A, --onlyattr Print the header and value of attributes
Optional value 0 suppresses printing attributes.
+ --vds-view-first-missing Set the VDS bounds to first missing mapped elements.
+ --vds-gap-size=N Set the missing file gap size, N=non-negative integers
--------------- Object Property Options ---------------
-i, --object-ids Print the object ids
-p, --properties Print dataset filters, storage layout and fill value
diff --git a/tools/testfiles/pbits/tpbitsLengthPositive.ddl b/tools/testfiles/pbits/tpbitsLengthPositive.ddl
index 4f56619..f2574d4 100644
--- a/tools/testfiles/pbits/tpbitsLengthPositive.ddl
+++ b/tools/testfiles/pbits/tpbitsLengthPositive.ddl
@@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files
P can be the absolute path or just a relative path.
-A, --onlyattr Print the header and value of attributes
Optional value 0 suppresses printing attributes.
+ --vds-view-first-missing Set the VDS bounds to first missing mapped elements.
+ --vds-gap-size=N Set the missing file gap size, N=non-negative integers
--------------- Object Property Options ---------------
-i, --object-ids Print the object ids
-p, --properties Print dataset filters, storage layout and fill value
diff --git a/tools/testfiles/pbits/tpbitsMaxExceeded.ddl b/tools/testfiles/pbits/tpbitsMaxExceeded.ddl
index 3432433..15c0abc 100644
--- a/tools/testfiles/pbits/tpbitsMaxExceeded.ddl
+++ b/tools/testfiles/pbits/tpbitsMaxExceeded.ddl
@@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files
P can be the absolute path or just a relative path.
-A, --onlyattr Print the header and value of attributes
Optional value 0 suppresses printing attributes.
+ --vds-view-first-missing Set the VDS bounds to first missing mapped elements.
+ --vds-gap-size=N Set the missing file gap size, N=non-negative integers
--------------- Object Property Options ---------------
-i, --object-ids Print the object ids
-p, --properties Print dataset filters, storage layout and fill value
diff --git a/tools/testfiles/pbits/tpbitsOffsetExceeded.ddl b/tools/testfiles/pbits/tpbitsOffsetExceeded.ddl
index e51a09e..c62e290 100644
--- a/tools/testfiles/pbits/tpbitsOffsetExceeded.ddl
+++ b/tools/testfiles/pbits/tpbitsOffsetExceeded.ddl
@@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files
P can be the absolute path or just a relative path.
-A, --onlyattr Print the header and value of attributes
Optional value 0 suppresses printing attributes.
+ --vds-view-first-missing Set the VDS bounds to first missing mapped elements.
+ --vds-gap-size=N Set the missing file gap size, N=non-negative integers
--------------- Object Property Options ---------------
-i, --object-ids Print the object ids
-p, --properties Print dataset filters, storage layout and fill value
diff --git a/tools/testfiles/pbits/tpbitsOffsetNegative.ddl b/tools/testfiles/pbits/tpbitsOffsetNegative.ddl
index ba6e46d..5621a60 100644
--- a/tools/testfiles/pbits/tpbitsOffsetNegative.ddl
+++ b/tools/testfiles/pbits/tpbitsOffsetNegative.ddl
@@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files
P can be the absolute path or just a relative path.
-A, --onlyattr Print the header and value of attributes
Optional value 0 suppresses printing attributes.
+ --vds-view-first-missing Set the VDS bounds to first missing mapped elements.
+ --vds-gap-size=N Set the missing file gap size, N=non-negative integers
--------------- Object Property Options ---------------
-i, --object-ids Print the object ids
-p, --properties Print dataset filters, storage layout and fill value
diff --git a/tools/testfiles/vds/a.h5 b/tools/testfiles/vds/a.h5
new file mode 100644
index 0000000..fa19535
--- /dev/null
+++ b/tools/testfiles/vds/a.h5
Binary files differ
diff --git a/tools/testfiles/vds/b.h5 b/tools/testfiles/vds/b.h5
new file mode 100644
index 0000000..08449ca
--- /dev/null
+++ b/tools/testfiles/vds/b.h5
Binary files differ
diff --git a/tools/testfiles/vds/c.h5 b/tools/testfiles/vds/c.h5
new file mode 100644
index 0000000..ba9af30
--- /dev/null
+++ b/tools/testfiles/vds/c.h5
Binary files differ
diff --git a/tools/testfiles/vds/d.h5 b/tools/testfiles/vds/d.h5
new file mode 100644
index 0000000..8eceb4a
--- /dev/null
+++ b/tools/testfiles/vds/d.h5
Binary files differ
diff --git a/tools/testfiles/vds/f-0.h5 b/tools/testfiles/vds/f-0.h5
new file mode 100644
index 0000000..242df07
--- /dev/null
+++ b/tools/testfiles/vds/f-0.h5
Binary files differ
diff --git a/tools/testfiles/vds/f-3.h5 b/tools/testfiles/vds/f-3.h5
new file mode 100644
index 0000000..539c1c9
--- /dev/null
+++ b/tools/testfiles/vds/f-3.h5
Binary files differ
diff --git a/tools/testfiles/vds/vds-eiger.h5 b/tools/testfiles/vds/vds-eiger.h5
new file mode 100644
index 0000000..23d1fd3
--- /dev/null
+++ b/tools/testfiles/vds/vds-eiger.h5
Binary files differ
diff --git a/tools/testfiles/vds/vds-first.ddl b/tools/testfiles/vds/vds-first.ddl
new file mode 100644
index 0000000..97b1ecf
--- /dev/null
+++ b/tools/testfiles/vds/vds-first.ddl
@@ -0,0 +1,210 @@
+HDF5 "vds-percival-unlim-maxmin.h5" {
+GROUP "/" {
+ DATASET "VDS-Percival-unlim-maxmin" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 20, 10, 10 ) / ( H5S_UNLIMITED, 10, 10 ) }
+ DATA {
+ (0,0,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,1,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,2,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,3,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,4,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,5,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,6,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,7,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,8,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,9,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (1,0,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,1,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,2,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,3,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,4,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,5,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,6,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,7,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,8,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,9,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (2,0,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,1,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,2,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,3,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,4,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,5,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,6,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,7,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,8,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,9,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (3,0,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,1,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,2,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,3,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,4,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,5,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,6,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,7,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,8,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,9,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (4,0,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,1,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,2,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,3,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,4,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,5,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,6,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,7,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,8,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,9,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (5,0,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,1,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,2,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,3,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,4,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,5,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,6,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,7,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,8,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,9,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (6,0,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,1,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,2,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,3,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,4,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,5,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,6,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,7,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,8,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,9,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (7,0,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,1,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,2,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,3,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,4,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,5,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,6,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,7,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,8,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,9,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (8,0,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,1,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,2,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,3,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,4,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,5,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,6,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,7,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,8,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,9,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (9,0,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,1,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,2,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,3,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,4,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,5,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,6,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,7,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,8,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,9,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (10,0,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,1,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,2,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,3,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,4,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,5,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,6,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,7,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,8,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,9,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (11,0,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (11,1,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (11,2,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (11,3,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (11,4,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (11,5,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (11,6,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (11,7,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (11,8,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (11,9,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (12,0,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (12,1,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (12,2,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (12,3,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (12,4,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (12,5,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (12,6,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (12,7,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (12,8,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (12,9,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (13,0,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (13,1,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (13,2,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (13,3,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (13,4,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (13,5,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (13,6,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (13,7,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (13,8,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (13,9,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (14,0,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (14,1,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (14,2,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (14,3,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (14,4,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (14,5,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (14,6,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (14,7,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (14,8,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (14,9,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (15,0,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (15,1,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (15,2,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (15,3,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (15,4,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (15,5,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (15,6,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (15,7,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (15,8,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (15,9,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (16,0,0): 10, 10, 10, 10, 10, 10, 10, 10, 10, 10,
+ (16,1,0): 10, 10, 10, 10, 10, 10, 10, 10, 10, 10,
+ (16,2,0): 10, 10, 10, 10, 10, 10, 10, 10, 10, 10,
+ (16,3,0): 10, 10, 10, 10, 10, 10, 10, 10, 10, 10,
+ (16,4,0): 10, 10, 10, 10, 10, 10, 10, 10, 10, 10,
+ (16,5,0): 10, 10, 10, 10, 10, 10, 10, 10, 10, 10,
+ (16,6,0): 10, 10, 10, 10, 10, 10, 10, 10, 10, 10,
+ (16,7,0): 10, 10, 10, 10, 10, 10, 10, 10, 10, 10,
+ (16,8,0): 10, 10, 10, 10, 10, 10, 10, 10, 10, 10,
+ (16,9,0): 10, 10, 10, 10, 10, 10, 10, 10, 10, 10,
+ (17,0,0): 20, 20, 20, 20, 20, 20, 20, 20, 20, 20,
+ (17,1,0): 20, 20, 20, 20, 20, 20, 20, 20, 20, 20,
+ (17,2,0): 20, 20, 20, 20, 20, 20, 20, 20, 20, 20,
+ (17,3,0): 20, 20, 20, 20, 20, 20, 20, 20, 20, 20,
+ (17,4,0): 20, 20, 20, 20, 20, 20, 20, 20, 20, 20,
+ (17,5,0): 20, 20, 20, 20, 20, 20, 20, 20, 20, 20,
+ (17,6,0): 20, 20, 20, 20, 20, 20, 20, 20, 20, 20,
+ (17,7,0): 20, 20, 20, 20, 20, 20, 20, 20, 20, 20,
+ (17,8,0): 20, 20, 20, 20, 20, 20, 20, 20, 20, 20,
+ (17,9,0): 20, 20, 20, 20, 20, 20, 20, 20, 20, 20,
+ (18,0,0): 30, 30, 30, 30, 30, 30, 30, 30, 30, 30,
+ (18,1,0): 30, 30, 30, 30, 30, 30, 30, 30, 30, 30,
+ (18,2,0): 30, 30, 30, 30, 30, 30, 30, 30, 30, 30,
+ (18,3,0): 30, 30, 30, 30, 30, 30, 30, 30, 30, 30,
+ (18,4,0): 30, 30, 30, 30, 30, 30, 30, 30, 30, 30,
+ (18,5,0): 30, 30, 30, 30, 30, 30, 30, 30, 30, 30,
+ (18,6,0): 30, 30, 30, 30, 30, 30, 30, 30, 30, 30,
+ (18,7,0): 30, 30, 30, 30, 30, 30, 30, 30, 30, 30,
+ (18,8,0): 30, 30, 30, 30, 30, 30, 30, 30, 30, 30,
+ (18,9,0): 30, 30, 30, 30, 30, 30, 30, 30, 30, 30,
+ (19,0,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (19,1,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (19,2,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (19,3,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (19,4,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (19,5,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (19,6,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (19,7,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (19,8,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (19,9,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40
+ }
+ }
+}
+}
diff --git a/tools/testfiles/vds/vds-gap1.ddl b/tools/testfiles/vds/vds-gap1.ddl
new file mode 100644
index 0000000..cace781
--- /dev/null
+++ b/tools/testfiles/vds/vds-gap1.ddl
@@ -0,0 +1,58 @@
+HDF5 "vds-eiger.h5" {
+DATASET "/VDS-Eiger" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 5, 10, 10 ) / ( H5S_UNLIMITED, 10, 10 ) }
+ DATA {
+ (0,0,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (0,1,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (0,2,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (0,3,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (0,4,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (0,5,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (0,6,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (0,7,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (0,8,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (0,9,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (1,0,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (1,1,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (1,2,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (1,3,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (1,4,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (1,5,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (1,6,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (1,7,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (1,8,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (1,9,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (2,0,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (2,1,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (2,2,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (2,3,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (2,4,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (2,5,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (2,6,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (2,7,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (2,8,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (2,9,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (3,0,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (3,1,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (3,2,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (3,3,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (3,4,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (3,5,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (3,6,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (3,7,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (3,8,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (3,9,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,0,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,1,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,2,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,3,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,4,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,5,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,6,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,7,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,8,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,9,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0
+ }
+}
+}
diff --git a/tools/testfiles/vds/vds-gap2.ddl b/tools/testfiles/vds/vds-gap2.ddl
new file mode 100644
index 0000000..24da48f
--- /dev/null
+++ b/tools/testfiles/vds/vds-gap2.ddl
@@ -0,0 +1,210 @@
+HDF5 "vds-eiger.h5" {
+GROUP "/" {
+ DATASET "VDS-Eiger" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 20, 10, 10 ) / ( H5S_UNLIMITED, 10, 10 ) }
+ DATA {
+ (0,0,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (0,1,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (0,2,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
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+ }
+ }
+}
+}
diff --git a/tools/testfiles/vds/vds-percival-unlim-maxmin.h5 b/tools/testfiles/vds/vds-percival-unlim-maxmin.h5
new file mode 100644
index 0000000..b7f8827
--- /dev/null
+++ b/tools/testfiles/vds/vds-percival-unlim-maxmin.h5
Binary files differ
diff --git a/tools/testfiles/vds/vds_layout-eiger.ddl b/tools/testfiles/vds/vds_layout-eiger.ddl
new file mode 100644
index 0000000..0ea4994
--- /dev/null
+++ b/tools/testfiles/vds/vds_layout-eiger.ddl
@@ -0,0 +1,87 @@
+HDF5 "vds-eiger.h5" {
+GROUP "/" {
+ DATASET "VDS-Eiger" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 5, 10, 10 ) / ( H5S_UNLIMITED, 10, 10 ) }
+ STORAGE_LAYOUT {
+ MAPPING 0 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (5,1,1)
+ COUNT (H5S_UNLIMITED,1,1)
+ BLOCK (5,10,10)
+ }
+ }
+ SOURCE {
+ FILE "f-%b.h5"
+ DATASET "A"
+ SELECTION ALL
+ }
+ }
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE 0
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ DATA {
+ (0,0,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (0,1,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (0,2,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (0,3,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
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+ (1,9,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
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+ (2,1,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
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+ (3,9,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,0,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,1,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,2,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,3,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,4,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,5,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,6,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,7,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,8,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
+ (4,9,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0
+ }
+ }
+}
+}
diff --git a/tools/testfiles/vds/vds_layout-maxmin.ddl b/tools/testfiles/vds/vds_layout-maxmin.ddl
new file mode 100644
index 0000000..0b5b583
--- /dev/null
+++ b/tools/testfiles/vds/vds_layout-maxmin.ddl
@@ -0,0 +1,422 @@
+HDF5 "vds-percival-unlim-maxmin.h5" {
+GROUP "/" {
+ DATASET "VDS-Percival-unlim-maxmin" {
+ DATATYPE H5T_STD_I32LE
+ DATASPACE SIMPLE { ( 32, 10, 10 ) / ( H5S_UNLIMITED, 10, 10 ) }
+ STORAGE_LAYOUT {
+ MAPPING 0 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (4,1,1)
+ COUNT (H5S_UNLIMITED,1,1)
+ BLOCK (1,10,10)
+ }
+ }
+ SOURCE {
+ FILE "a.h5"
+ DATASET "A"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (H5S_UNLIMITED,1,1)
+ BLOCK (1,10,10)
+ }
+ }
+ }
+ MAPPING 1 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (1,0,0)
+ STRIDE (4,1,1)
+ COUNT (H5S_UNLIMITED,1,1)
+ BLOCK (1,10,10)
+ }
+ }
+ SOURCE {
+ FILE "b.h5"
+ DATASET "B"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (H5S_UNLIMITED,1,1)
+ BLOCK (1,10,10)
+ }
+ }
+ }
+ MAPPING 2 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (2,0,0)
+ STRIDE (4,1,1)
+ COUNT (H5S_UNLIMITED,1,1)
+ BLOCK (1,10,10)
+ }
+ }
+ SOURCE {
+ FILE "c.h5"
+ DATASET "C"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (H5S_UNLIMITED,1,1)
+ BLOCK (1,10,10)
+ }
+ }
+ }
+ MAPPING 3 {
+ VIRTUAL {
+ SELECTION REGULAR_HYPERSLAB {
+ START (3,0,0)
+ STRIDE (4,1,1)
+ COUNT (H5S_UNLIMITED,1,1)
+ BLOCK (1,10,10)
+ }
+ }
+ SOURCE {
+ FILE "d.h5"
+ DATASET "D"
+ SELECTION REGULAR_HYPERSLAB {
+ START (0,0,0)
+ STRIDE (1,1,1)
+ COUNT (H5S_UNLIMITED,1,1)
+ BLOCK (1,10,10)
+ }
+ }
+ }
+ }
+ FILTERS {
+ NONE
+ }
+ FILLVALUE {
+ FILL_TIME H5D_FILL_TIME_IFSET
+ VALUE 0
+ }
+ ALLOCATION_TIME {
+ H5D_ALLOC_TIME_LATE
+ }
+ DATA {
+ (0,0,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,1,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,2,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,3,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,4,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,5,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,6,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,7,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,8,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (0,9,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (1,0,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,1,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,2,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,3,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,4,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,5,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,6,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,7,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,8,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (1,9,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (2,0,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,1,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,2,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,3,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,4,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,5,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,6,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,7,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,8,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (2,9,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (3,0,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,1,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,2,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,3,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,4,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,5,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,6,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,7,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,8,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (3,9,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (4,0,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,1,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,2,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,3,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,4,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,5,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,6,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,7,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,8,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (4,9,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (5,0,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,1,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,2,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,3,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,4,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,5,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,6,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,7,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,8,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (5,9,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (6,0,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,1,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,2,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,3,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,4,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,5,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,6,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,7,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,8,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (6,9,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (7,0,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,1,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,2,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,3,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,4,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,5,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,6,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,7,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,8,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (7,9,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (8,0,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,1,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,2,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,3,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,4,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,5,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,6,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,7,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,8,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (8,9,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
+ (9,0,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,1,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,2,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,3,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,4,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,5,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,6,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,7,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,8,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (9,9,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
+ (10,0,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,1,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,2,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,3,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,4,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,5,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,6,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,7,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,8,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
+ (10,9,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3,
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+ (11,1,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
+ (11,2,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
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+ (11,4,0): 4, 4, 4, 4, 4, 4, 4, 4, 4, 4,
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+ (16,9,0): 10, 10, 10, 10, 10, 10, 10, 10, 10, 10,
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+ (22,5,0): 30, 30, 30, 30, 30, 30, 30, 30, 30, 30,
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+ (22,7,0): 30, 30, 30, 30, 30, 30, 30, 30, 30, 30,
+ (22,8,0): 30, 30, 30, 30, 30, 30, 30, 30, 30, 30,
+ (22,9,0): 30, 30, 30, 30, 30, 30, 30, 30, 30, 30,
+ (23,0,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (23,1,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (23,2,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
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+ (23,4,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (23,5,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (23,6,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (23,7,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (23,8,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
+ (23,9,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40,
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+ (31,9,0): 40, 40, 40, 40, 40, 40, 40, 40, 40, 40
+ }
+ }
+}
+}
generated by cgit v0.12 at 2024-11-09 16:02:24 (GMT)