diff options
Diffstat (limited to 'tools')
45 files changed, 1527 insertions, 776 deletions
diff --git a/tools/Makefile.in b/tools/Makefile.in index 113e752..3675e3a 100644 --- a/tools/Makefile.in +++ b/tools/Makefile.in @@ -1,8 +1,9 @@ -# Makefile.in generated by automake 1.10.2 from Makefile.am. +# Makefile.in generated by automake 1.11 from Makefile.am. # @configure_input@ # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. +# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, +# Inc. # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -32,8 +33,9 @@ # VPATH = @srcdir@ pkgdatadir = $(datadir)/@PACKAGE@ -pkglibdir = $(libdir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkglibexecdir = $(libexecdir)/@PACKAGE@ am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd install_sh_DATA = $(install_sh) -c -m 644 install_sh_PROGRAM = $(install_sh) -c @@ -60,6 +62,7 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = +CONFIG_CLEAN_VPATH_FILES = SOURCES = DIST_SOURCES = RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ @@ -71,10 +74,40 @@ RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ ps-recursive uninstall-recursive RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \ distclean-recursive maintainer-clean-recursive +AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \ + $(RECURSIVE_CLEAN_TARGETS:-recursive=) tags TAGS ctags CTAGS \ + distdir ETAGS = etags CTAGS = ctags +am__tty_colors = \ +red=; grn=; lgn=; blu=; std= DIST_SUBDIRS = $(SUBDIRS) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) +am__relativize = \ + dir0=`pwd`; \ + sed_first='s,^\([^/]*\)/.*$$,\1,'; \ + sed_rest='s,^[^/]*/*,,'; \ + sed_last='s,^.*/\([^/]*\)$$,\1,'; \ + sed_butlast='s,/*[^/]*$$,,'; \ + while test -n "$$dir1"; do \ + first=`echo "$$dir1" | sed -e "$$sed_first"`; \ + if test "$$first" != "."; then \ + if test "$$first" = ".."; then \ + dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \ + dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \ + else \ + first2=`echo "$$dir2" | sed -e "$$sed_first"`; \ + if test "$$first2" = "$$first"; then \ + dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \ + else \ + dir2="../$$dir2"; \ + fi; \ + dir0="$$dir0"/"$$first"; \ + fi; \ + fi; \ + dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \ + done; \ + reldir="$$dir2" ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ AMTAR = @AMTAR@ @@ -188,6 +221,7 @@ PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ PACKAGE_NAME = @PACKAGE_NAME@ PACKAGE_STRING = @PACKAGE_STRING@ PACKAGE_TARNAME = @PACKAGE_TARNAME@ +PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ @@ -279,6 +313,7 @@ sharedstatedir = @sharedstatedir@ srcdir = @srcdir@ sysconfdir = @sysconfdir@ target_alias = @target_alias@ +top_build_prefix = @top_build_prefix@ top_builddir = @top_builddir@ top_srcdir = @top_srcdir@ @@ -355,9 +390,9 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir exit 1;; \ esac; \ done; \ - echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/Makefile'; \ - cd $(top_srcdir) && \ - $(AUTOMAKE) --foreign tools/Makefile + echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/Makefile'; \ + $(am__cd) $(top_srcdir) && \ + $(AUTOMAKE) --foreign tools/Makefile .PRECIOUS: Makefile Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status @case '$?' in \ @@ -375,6 +410,7 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +$(am__aclocal_m4_deps): mostlyclean-libtool: -rm -f *.lo @@ -406,7 +442,7 @@ $(RECURSIVE_TARGETS): else \ local_target="$$target"; \ fi; \ - (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \ + ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \ || eval $$failcom; \ done; \ if test "$$dot_seen" = "no"; then \ @@ -440,16 +476,16 @@ $(RECURSIVE_CLEAN_TARGETS): else \ local_target="$$target"; \ fi; \ - (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \ + ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \ || eval $$failcom; \ done && test -z "$$fail" tags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ - test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \ + test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \ done ctags-recursive: list='$(SUBDIRS)'; for subdir in $$list; do \ - test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \ + test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \ done ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES) @@ -464,7 +500,7 @@ tags: TAGS TAGS: tags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ + set x; \ here=`pwd`; \ if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \ include_option=--etags-include; \ @@ -476,7 +512,7 @@ TAGS: tags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ list='$(SUBDIRS)'; for subdir in $$list; do \ if test "$$subdir" = .; then :; else \ test ! -f $$subdir/TAGS || \ - tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \ + set "$$@" "$$include_option=$$here/$$subdir/TAGS"; \ fi; \ done; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ @@ -485,29 +521,34 @@ TAGS: tags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \ + shift; \ + if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \ test -n "$$unique" || unique=$$empty_fix; \ - $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ - $$tags $$unique; \ + if test $$# -gt 0; then \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + "$$@" $$unique; \ + else \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + $$unique; \ + fi; \ fi ctags: CTAGS CTAGS: ctags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - test -z "$(CTAGS_ARGS)$$tags$$unique" \ + test -z "$(CTAGS_ARGS)$$unique" \ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \ - $$tags $$unique + $$unique GTAGS: here=`$(am__cd) $(top_builddir) && pwd` \ - && cd $(top_srcdir) \ - && gtags -i $(GTAGS_ARGS) $$here + && $(am__cd) $(top_srcdir) \ + && gtags -i $(GTAGS_ARGS) "$$here" distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -528,29 +569,44 @@ distdir: $(DISTFILES) if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ if test -d $$d/$$file; then \ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ + if test -d "$(distdir)/$$file"; then \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ + fi; \ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ - cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ fi; \ - cp -pR $$d/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \ else \ - test -f $(distdir)/$$file \ - || cp -p $$d/$$file $(distdir)/$$file \ + test -f "$(distdir)/$$file" \ + || cp -p $$d/$$file "$(distdir)/$$file" \ || exit 1; \ fi; \ done - list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ + @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ if test "$$subdir" = .; then :; else \ test -d "$(distdir)/$$subdir" \ || $(MKDIR_P) "$(distdir)/$$subdir" \ || exit 1; \ - distdir=`$(am__cd) $(distdir) && pwd`; \ - top_distdir=`$(am__cd) $(top_distdir) && pwd`; \ - (cd $$subdir && \ + fi; \ + done + @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \ + if test "$$subdir" = .; then :; else \ + dir1=$$subdir; dir2="$(distdir)/$$subdir"; \ + $(am__relativize); \ + new_distdir=$$reldir; \ + dir1=$$subdir; dir2="$(top_distdir)"; \ + $(am__relativize); \ + new_top_distdir=$$reldir; \ + echo " (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) top_distdir="$$new_top_distdir" distdir="$$new_distdir" \\"; \ + echo " am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)"; \ + ($(am__cd) $$subdir && \ $(MAKE) $(AM_MAKEFLAGS) \ - top_distdir="$$top_distdir" \ - distdir="$$distdir/$$subdir" \ + top_distdir="$$new_top_distdir" \ + distdir="$$new_distdir" \ am__remove_distdir=: \ am__skip_length_check=: \ + am__skip_mode_fix=: \ distdir) \ || exit 1; \ fi; \ @@ -581,6 +637,7 @@ clean-generic: distclean-generic: -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) + -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES) maintainer-clean-generic: @echo "This command is intended for maintainers to use" @@ -599,6 +656,8 @@ dvi-am: html: html-recursive +html-am: + info: info-recursive info-am: @@ -607,18 +666,28 @@ install-data-am: install-dvi: install-dvi-recursive +install-dvi-am: + install-exec-am: install-html: install-html-recursive +install-html-am: + install-info: install-info-recursive +install-info-am: + install-man: install-pdf: install-pdf-recursive +install-pdf-am: + install-ps: install-ps-recursive +install-ps-am: + installcheck-am: maintainer-clean: maintainer-clean-recursive @@ -640,8 +709,8 @@ ps-am: uninstall-am: -.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) install-am \ - install-strip +.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) check-am \ + ctags-recursive install-am install-strip tags-recursive .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \ all all-am all-local check check-TESTS check-am clean \ @@ -863,6 +932,7 @@ check-vfd: $(LIB) $(PROGS) $(TESTS) HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ fi; \ done + # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: diff --git a/tools/h5copy/Makefile.am b/tools/h5copy/Makefile.am index 23432eb..1848972 100644 --- a/tools/h5copy/Makefile.am +++ b/tools/h5copy/Makefile.am @@ -33,6 +33,9 @@ SCRIPT_DEPEND=h5copy$(EXEEXT) bin_PROGRAMS=h5copy check_PROGRAMS=$(TEST_PROG) +# Add h5copy specific linker flags here +h5copy_LDFLAGS = $(LT_STATIC_EXEC) + # source file for the test file generator h5copygentest_SOURCES=h5copygentest.c diff --git a/tools/h5copy/Makefile.in b/tools/h5copy/Makefile.in index 958b30f..b582057 100644 --- a/tools/h5copy/Makefile.in +++ b/tools/h5copy/Makefile.in @@ -1,8 +1,9 @@ -# Makefile.in generated by automake 1.10.2 from Makefile.am. +# Makefile.in generated by automake 1.11 from Makefile.am. # @configure_input@ # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. +# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, +# Inc. # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,8 +34,9 @@ VPATH = @srcdir@ pkgdatadir = $(datadir)/@PACKAGE@ -pkglibdir = $(libdir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkglibexecdir = $(libexecdir)/@PACKAGE@ am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd install_sh_DATA = $(install_sh) -c -m 644 install_sh_PROGRAM = $(install_sh) -c @@ -63,14 +65,17 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = +CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" -binPROGRAMS_INSTALL = $(INSTALL_PROGRAM) am__EXEEXT_1 = h5copygentest$(EXEEXT) PROGRAMS = $(bin_PROGRAMS) h5copy_SOURCES = h5copy.c h5copy_OBJECTS = h5copy.$(OBJEXT) h5copy_LDADD = $(LDADD) h5copy_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +h5copy_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(h5copy_LDFLAGS) \ + $(LDFLAGS) -o $@ am_h5copygentest_OBJECTS = h5copygentest.$(OBJEXT) h5copygentest_OBJECTS = $(am_h5copygentest_OBJECTS) h5copygentest_LDADD = $(LDADD) @@ -78,6 +83,7 @@ h5copygentest_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles +am__mv = mv -f COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ @@ -91,6 +97,8 @@ SOURCES = h5copy.c $(h5copygentest_SOURCES) DIST_SOURCES = h5copy.c $(h5copygentest_SOURCES) ETAGS = etags CTAGS = ctags +am__tty_colors = \ +red=; grn=; lgn=; blu=; std= DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ @@ -205,6 +213,7 @@ PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ PACKAGE_NAME = @PACKAGE_NAME@ PACKAGE_STRING = @PACKAGE_STRING@ PACKAGE_TARNAME = @PACKAGE_TARNAME@ +PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ @@ -296,6 +305,7 @@ sharedstatedir = @sharedstatedir@ srcdir = @srcdir@ sysconfdir = @sysconfdir@ target_alias = @target_alias@ +top_build_prefix = @top_build_prefix@ top_builddir = @top_builddir@ top_srcdir = @top_srcdir@ @@ -353,6 +363,9 @@ TEST_SCRIPT = $(srcdir)/testh5copy.sh check_SCRIPTS = $(TEST_SCRIPT) SCRIPT_DEPEND = h5copy$(EXEEXT) +# Add h5copy specific linker flags here +h5copy_LDFLAGS = $(LT_STATIC_EXEC) + # source file for the test file generator h5copygentest_SOURCES = h5copygentest.c @@ -387,9 +400,9 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir exit 1;; \ esac; \ done; \ - echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5copy/Makefile'; \ - cd $(top_srcdir) && \ - $(AUTOMAKE) --foreign tools/h5copy/Makefile + echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5copy/Makefile'; \ + $(am__cd) $(top_srcdir) && \ + $(AUTOMAKE) --foreign tools/h5copy/Makefile .PRECIOUS: Makefile Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status @case '$?' in \ @@ -407,44 +420,62 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +$(am__aclocal_m4_deps): install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - if test -f $$p \ - || test -f $$p1 \ - ; then \ - f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \ - $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \ - else :; fi; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + for p in $$list; do echo "$$p $$p"; done | \ + sed 's/$(EXEEXT)$$//' | \ + while read p p1; do if test -f $$p || test -f $$p1; \ + then echo "$$p"; echo "$$p"; else :; fi; \ + done | \ + sed -e 'p;s,.*/,,;n;h' -e 's|.*|.|' \ + -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \ + sed 'N;N;N;s,\n, ,g' | \ + $(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \ + { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \ + if ($$2 == $$4) files[d] = files[d] " " $$1; \ + else { print "f", $$3 "/" $$4, $$1; } } \ + END { for (d in files) print "f", d, files[d] }' | \ + while read type dir files; do \ + if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \ + test -z "$$files" || { \ + echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \ + $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \ + } \ + ; done uninstall-binPROGRAMS: @$(NORMAL_UNINSTALL) - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \ - rm -f "$(DESTDIR)$(bindir)/$$f"; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + files=`for p in $$list; do echo "$$p"; done | \ + sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \ + -e 's/$$/$(EXEEXT)/' `; \ + test -n "$$list" || exit 0; \ + echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ + cd "$(DESTDIR)$(bindir)" && rm -f $$files clean-binPROGRAMS: - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(bin_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list clean-checkPROGRAMS: - @list='$(check_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(check_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list h5copy$(EXEEXT): $(h5copy_OBJECTS) $(h5copy_DEPENDENCIES) @rm -f h5copy$(EXEEXT) - $(LINK) $(h5copy_OBJECTS) $(h5copy_LDADD) $(LIBS) + $(h5copy_LINK) $(h5copy_OBJECTS) $(h5copy_LDADD) $(LIBS) h5copygentest$(EXEEXT): $(h5copygentest_OBJECTS) $(h5copygentest_DEPENDENCIES) @rm -f h5copygentest$(EXEEXT) $(LINK) $(h5copygentest_OBJECTS) $(h5copygentest_LDADD) $(LIBS) @@ -460,21 +491,21 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< @@ -497,7 +528,7 @@ tags: TAGS TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ + set x; \ here=`pwd`; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ @@ -505,29 +536,34 @@ TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \ + shift; \ + if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \ test -n "$$unique" || unique=$$empty_fix; \ - $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ - $$tags $$unique; \ + if test $$# -gt 0; then \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + "$$@" $$unique; \ + else \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + $$unique; \ + fi; \ fi ctags: CTAGS CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - test -z "$(CTAGS_ARGS)$$tags$$unique" \ + test -z "$(CTAGS_ARGS)$$unique" \ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \ - $$tags $$unique + $$unique GTAGS: here=`$(am__cd) $(top_builddir) && pwd` \ - && cd $(top_srcdir) \ - && gtags -i $(GTAGS_ARGS) $$here + && $(am__cd) $(top_srcdir) \ + && gtags -i $(GTAGS_ARGS) "$$here" distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -548,13 +584,17 @@ distdir: $(DISTFILES) if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ if test -d $$d/$$file; then \ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ + if test -d "$(distdir)/$$file"; then \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ + fi; \ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ - cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ fi; \ - cp -pR $$d/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \ else \ - test -f $(distdir)/$$file \ - || cp -p $$d/$$file $(distdir)/$$file \ + test -f "$(distdir)/$$file" \ + || cp -p $$d/$$file "$(distdir)/$$file" \ || exit 1; \ fi; \ done @@ -587,6 +627,7 @@ clean-generic: distclean-generic: -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) + -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES) maintainer-clean-generic: @echo "This command is intended for maintainers to use" @@ -608,6 +649,8 @@ dvi-am: html: html-am +html-am: + info: info-am info-am: @@ -616,18 +659,28 @@ install-data-am: install-dvi: install-dvi-am +install-dvi-am: + install-exec-am: install-binPROGRAMS install-html: install-html-am +install-html-am: + install-info: install-info-am +install-info-am: + install-man: install-pdf: install-pdf-am +install-pdf-am: + install-ps: install-ps-am +install-ps-am: + installcheck-am: maintainer-clean: maintainer-clean-am @@ -650,7 +703,7 @@ ps-am: uninstall-am: uninstall-binPROGRAMS -.MAKE: install-am install-strip +.MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ @@ -873,6 +926,7 @@ check-vfd: $(LIB) $(PROGS) $(TESTS) HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ fi; \ done + # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: diff --git a/tools/h5copy/testfiles/h5copytst.out.ls b/tools/h5copy/testfiles/h5copytst.out.ls index 9cad76f..5ff1e90 100644 --- a/tools/h5copy/testfiles/h5copytst.out.ls +++ b/tools/h5copy/testfiles/h5copytst.out.ls @@ -6,57 +6,57 @@ Opened "../testfiles/h5copytst.out.h5" with sec2 driver. Location: 1:96 Links: 1 /A Group - Location: 1:89936 + Location: 1:90032 Links: 1 /A/B1 Group - Location: 1:90640 + Location: 1:90736 Links: 1 /A/B1/simple Dataset {6/6} - Location: 1:89808 + Location: 1:89904 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /A/B2 Group - Location: 1:94176 + Location: 1:94272 Links: 1 /A/B2/simple2 Dataset {6/6} - Location: 1:94048 + Location: 1:94144 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /C Group - Location: 1:97384 + Location: 1:97480 Links: 1 /C/D Group - Location: 1:98088 + Location: 1:98184 Links: 1 /C/D/simple Dataset {6/6} - Location: 1:97256 + Location: 1:97352 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /E Group - Location: 1:112000 + Location: 1:112096 Links: 1 /E/F Group - Location: 1:112704 + Location: 1:112800 Links: 1 /E/F/grp_dsets Group - Location: 1:100200 + Location: 1:100296 Links: 1 /E/F/grp_dsets/chunk Dataset {6/6} - Location: 1:104384 + Location: 1:104480 Links: 1 Chunks: {2} 8 bytes Storage: <details removed for portability> Type: 32-bit little-endian integer /E/F/grp_dsets/compact Dataset {6/6} - Location: 1:104840 + Location: 1:104936 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /E/F/grp_dsets/compound Dataset {2/2} - Location: 1:104976 + Location: 1:105072 Links: 1 Storage: <details removed for portability> Type: struct { @@ -64,60 +64,60 @@ Opened "../testfiles/h5copytst.out.h5" with sec2 driver. "str2" +20 20-byte null-terminated ASCII string } 40 bytes /E/F/grp_dsets/compressed Dataset {6/6} - Location: 1:107288 + Location: 1:107384 Links: 1 Chunks: {2} 8 bytes Storage: <details removed for portability> Filter-0: deflate-1 OPT {1} Type: 32-bit little-endian integer /E/F/grp_dsets/named_vl Dataset {2/2} - Location: 1:111600 + Location: 1:111696 Links: 1 Storage: <details removed for portability> - Type: shared-1:107456 variable length of + Type: shared-1:107552 variable length of 32-bit little-endian integer /E/F/grp_dsets/nested_vl Dataset {2/2} - Location: 1:111728 + Location: 1:111824 Links: 1 Storage: <details removed for portability> Type: variable length of variable length of 32-bit little-endian integer /E/F/grp_dsets/simple Dataset {6/6} - Location: 1:111872 + Location: 1:111968 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /E/F/grp_dsets/vl Type - Location: 1:107456 + Location: 1:107552 Links: 2 - Type: shared-1:107456 variable length of + Type: shared-1:107552 variable length of 32-bit little-endian integer /G Group - Location: 1:127648 + Location: 1:127744 Links: 1 /G/H Group - Location: 1:128352 + Location: 1:128448 Links: 1 /G/H/grp_nested Group - Location: 1:114728 + Location: 1:114824 Links: 1 /G/H/grp_nested/grp_dsets Group - Location: 1:115520 + Location: 1:115616 Links: 1 /G/H/grp_nested/grp_dsets/chunk Dataset {6/6} - Location: 1:119704 + Location: 1:119800 Links: 1 Chunks: {2} 8 bytes Storage: <details removed for portability> Type: 32-bit little-endian integer /G/H/grp_nested/grp_dsets/compact Dataset {6/6} - Location: 1:120160 + Location: 1:120256 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /G/H/grp_nested/grp_dsets/compound Dataset {2/2} - Location: 1:120296 + Location: 1:120392 Links: 1 Storage: <details removed for portability> Type: struct { @@ -125,48 +125,48 @@ Opened "../testfiles/h5copytst.out.h5" with sec2 driver. "str2" +20 20-byte null-terminated ASCII string } 40 bytes /G/H/grp_nested/grp_dsets/compressed Dataset {6/6} - Location: 1:122608 + Location: 1:122704 Links: 1 Chunks: {2} 8 bytes Storage: <details removed for portability> Filter-0: deflate-1 OPT {1} Type: 32-bit little-endian integer /G/H/grp_nested/grp_dsets/named_vl Dataset {2/2} - Location: 1:126920 + Location: 1:127016 Links: 1 Storage: <details removed for portability> - Type: shared-1:122776 variable length of + Type: shared-1:122872 variable length of 32-bit little-endian integer /G/H/grp_nested/grp_dsets/nested_vl Dataset {2/2} - Location: 1:127048 + Location: 1:127144 Links: 1 Storage: <details removed for portability> Type: variable length of variable length of 32-bit little-endian integer /G/H/grp_nested/grp_dsets/simple Dataset {6/6} - Location: 1:127192 + Location: 1:127288 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /G/H/grp_nested/grp_dsets/vl Type - Location: 1:122776 + Location: 1:122872 Links: 2 - Type: shared-1:122776 variable length of + Type: shared-1:122872 variable length of 32-bit little-endian integer /chunk Dataset {6/6} - Location: 1:6216 + Location: 1:6312 Links: 1 Chunks: {2} 8 bytes Storage: <details removed for portability> Type: 32-bit little-endian integer /compact Dataset {6/6} - Location: 1:6344 + Location: 1:6440 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /compound Dataset {2/2} - Location: 1:8528 + Location: 1:8624 Links: 1 Storage: <details removed for portability> Type: struct { @@ -174,28 +174,28 @@ Opened "../testfiles/h5copytst.out.h5" with sec2 driver. "str2" +20 20-byte null-terminated ASCII string } 40 bytes /compressed Dataset {6/6} - Location: 1:12888 + Location: 1:12984 Links: 1 Chunks: {2} 8 bytes Storage: <details removed for portability> Filter-0: deflate-1 OPT {1} Type: 32-bit little-endian integer /grp_dsets Group - Location: 1:33760 + Location: 1:33856 Links: 1 /grp_dsets/chunk Dataset {6/6} - Location: 1:37944 + Location: 1:38040 Links: 1 Chunks: {2} 8 bytes Storage: <details removed for portability> Type: 32-bit little-endian integer /grp_dsets/compact Dataset {6/6} - Location: 1:38400 + Location: 1:38496 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /grp_dsets/compound Dataset {2/2} - Location: 1:38536 + Location: 1:38632 Links: 1 Storage: <details removed for portability> Type: struct { @@ -203,62 +203,62 @@ Opened "../testfiles/h5copytst.out.h5" with sec2 driver. "str2" +20 20-byte null-terminated ASCII string } 40 bytes /grp_dsets/compressed Dataset {6/6} - Location: 1:40848 + Location: 1:40944 Links: 1 Chunks: {2} 8 bytes Storage: <details removed for portability> Filter-0: deflate-1 OPT {1} Type: 32-bit little-endian integer /grp_dsets/named_vl Dataset {2/2} - Location: 1:45160 + Location: 1:45256 Links: 1 Storage: <details removed for portability> - Type: shared-1:41016 variable length of + Type: shared-1:41112 variable length of 32-bit little-endian integer /grp_dsets/nested_vl Dataset {2/2} - Location: 1:45288 + Location: 1:45384 Links: 1 Storage: <details removed for portability> Type: variable length of variable length of 32-bit little-endian integer /grp_dsets/simple Dataset {6/6} - Location: 1:45432 + Location: 1:45528 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /grp_dsets/simple_group Dataset {6/6} - Location: 1:61544 + Location: 1:61640 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /grp_dsets/vl Type - Location: 1:41016 + Location: 1:41112 Links: 2 - Type: shared-1:41016 variable length of + Type: shared-1:41112 variable length of 32-bit little-endian integer /grp_empty Group - Location: 1:32968 + Location: 1:33064 Links: 1 /grp_nested Group - Location: 1:46224 + Location: 1:46320 Links: 1 /grp_nested/grp_dsets Group - Location: 1:47016 + Location: 1:47112 Links: 1 /grp_nested/grp_dsets/chunk Dataset {6/6} - Location: 1:51200 + Location: 1:51296 Links: 1 Chunks: {2} 8 bytes Storage: <details removed for portability> Type: 32-bit little-endian integer /grp_nested/grp_dsets/compact Dataset {6/6} - Location: 1:51656 + Location: 1:51752 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /grp_nested/grp_dsets/compound Dataset {2/2} - Location: 1:51792 + Location: 1:51888 Links: 1 Storage: <details removed for portability> Type: struct { @@ -266,51 +266,51 @@ Opened "../testfiles/h5copytst.out.h5" with sec2 driver. "str2" +20 20-byte null-terminated ASCII string } 40 bytes /grp_nested/grp_dsets/compressed Dataset {6/6} - Location: 1:54104 + Location: 1:54200 Links: 1 Chunks: {2} 8 bytes Storage: <details removed for portability> Filter-0: deflate-1 OPT {1} Type: 32-bit little-endian integer /grp_nested/grp_dsets/named_vl Dataset {2/2} - Location: 1:58416 + Location: 1:58512 Links: 1 Storage: <details removed for portability> - Type: shared-1:54272 variable length of + Type: shared-1:54368 variable length of 32-bit little-endian integer /grp_nested/grp_dsets/nested_vl Dataset {2/2} - Location: 1:58544 + Location: 1:58640 Links: 1 Storage: <details removed for portability> Type: variable length of variable length of 32-bit little-endian integer /grp_nested/grp_dsets/simple Dataset {6/6} - Location: 1:58688 + Location: 1:58784 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /grp_nested/grp_dsets/vl Type - Location: 1:54272 + Location: 1:54368 Links: 2 - Type: shared-1:54272 variable length of + Type: shared-1:54368 variable length of 32-bit little-endian integer /grp_rename Group - Location: 1:62752 + Location: 1:62848 Links: 1 /grp_rename/chunk Dataset {6/6} - Location: 1:66936 + Location: 1:67032 Links: 1 Chunks: {2} 8 bytes Storage: <details removed for portability> Type: 32-bit little-endian integer /grp_rename/compact Dataset {6/6} - Location: 1:67392 + Location: 1:67488 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /grp_rename/compound Dataset {2/2} - Location: 1:67528 + Location: 1:67624 Links: 1 Storage: <details removed for portability> Type: struct { @@ -318,28 +318,28 @@ Opened "../testfiles/h5copytst.out.h5" with sec2 driver. "str2" +20 20-byte null-terminated ASCII string } 40 bytes /grp_rename/compressed Dataset {6/6} - Location: 1:69840 + Location: 1:69936 Links: 1 Chunks: {2} 8 bytes Storage: <details removed for portability> Filter-0: deflate-1 OPT {1} Type: 32-bit little-endian integer /grp_rename/grp_dsets Group - Location: 1:75632 + Location: 1:75728 Links: 1 /grp_rename/grp_dsets/chunk Dataset {6/6} - Location: 1:79816 + Location: 1:79912 Links: 1 Chunks: {2} 8 bytes Storage: <details removed for portability> Type: 32-bit little-endian integer /grp_rename/grp_dsets/compact Dataset {6/6} - Location: 1:80272 + Location: 1:80368 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /grp_rename/grp_dsets/compound Dataset {2/2} - Location: 1:80408 + Location: 1:80504 Links: 1 Storage: <details removed for portability> Type: struct { @@ -347,73 +347,73 @@ Opened "../testfiles/h5copytst.out.h5" with sec2 driver. "str2" +20 20-byte null-terminated ASCII string } 40 bytes /grp_rename/grp_dsets/compressed Dataset {6/6} - Location: 1:82720 + Location: 1:82816 Links: 1 Chunks: {2} 8 bytes Storage: <details removed for portability> Filter-0: deflate-1 OPT {1} Type: 32-bit little-endian integer /grp_rename/grp_dsets/named_vl Dataset {2/2} - Location: 1:87032 + Location: 1:87128 Links: 1 Storage: <details removed for portability> - Type: shared-1:82888 variable length of + Type: shared-1:82984 variable length of 32-bit little-endian integer /grp_rename/grp_dsets/nested_vl Dataset {2/2} - Location: 1:87160 + Location: 1:87256 Links: 1 Storage: <details removed for portability> Type: variable length of variable length of 32-bit little-endian integer /grp_rename/grp_dsets/simple Dataset {6/6} - Location: 1:87304 + Location: 1:87400 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /grp_rename/grp_dsets/vl Type - Location: 1:82888 + Location: 1:82984 Links: 2 - Type: shared-1:82888 variable length of + Type: shared-1:82984 variable length of 32-bit little-endian integer /grp_rename/named_vl Dataset {2/2} - Location: 1:74152 + Location: 1:74248 Links: 1 Storage: <details removed for portability> - Type: shared-1:70008 variable length of + Type: shared-1:70104 variable length of 32-bit little-endian integer /grp_rename/nested_vl Dataset {2/2} - Location: 1:74280 + Location: 1:74376 Links: 1 Storage: <details removed for portability> Type: variable length of variable length of 32-bit little-endian integer /grp_rename/simple Dataset {6/6} - Location: 1:74424 + Location: 1:74520 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer /grp_rename/vl Type - Location: 1:70008 + Location: 1:70104 Links: 2 - Type: shared-1:70008 variable length of + Type: shared-1:70104 variable length of 32-bit little-endian integer /named_vl Dataset {2/2} - Location: 1:13104 + Location: 1:13200 Links: 1 Storage: <details removed for portability> - Type: shared-1:13056 variable length of + Type: shared-1:13152 variable length of 32-bit little-endian integer /nested_vl Dataset {2/2} - Location: 1:27392 + Location: 1:27488 Links: 1 Storage: <details removed for portability> Type: variable length of variable length of 32-bit little-endian integer /rename Dataset {2/2} - Location: 1:31760 + Location: 1:31856 Links: 1 Storage: <details removed for portability> Type: struct { @@ -426,7 +426,7 @@ Opened "../testfiles/h5copytst.out.h5" with sec2 driver. Storage: <details removed for portability> Type: 32-bit little-endian integer /simple_top Dataset {6/6} - Location: 1:29584 + Location: 1:29680 Links: 1 Storage: <details removed for portability> Type: 32-bit little-endian integer diff --git a/tools/h5diff/Makefile.am b/tools/h5diff/Makefile.am index ed1d106..b56284b 100644 --- a/tools/h5diff/Makefile.am +++ b/tools/h5diff/Makefile.am @@ -33,6 +33,9 @@ endif # Our main target, h5diff bin_PROGRAMS=h5diff $(H5PDIFF) +# Add h5diff specific linker flags here +h5diff_LDFLAGS = $(LT_STATIC_EXEC) + # Test programs and scripts TEST_PROG=h5diffgentest TEST_SCRIPT=$(srcdir)/testh5diff.sh diff --git a/tools/h5diff/Makefile.in b/tools/h5diff/Makefile.in index b83d6ef..91add70 100644 --- a/tools/h5diff/Makefile.in +++ b/tools/h5diff/Makefile.in @@ -1,8 +1,9 @@ -# Makefile.in generated by automake 1.10.2 from Makefile.am. +# Makefile.in generated by automake 1.11 from Makefile.am. # @configure_input@ # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. +# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, +# Inc. # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,8 +34,9 @@ VPATH = @srcdir@ pkgdatadir = $(datadir)/@PACKAGE@ -pkglibdir = $(libdir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkglibexecdir = $(libexecdir)/@PACKAGE@ am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd install_sh_DATA = $(install_sh) -c -m 644 install_sh_PROGRAM = $(install_sh) -c @@ -63,15 +65,18 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = +CONFIG_CLEAN_VPATH_FILES = @BUILD_PARALLEL_CONDITIONAL_TRUE@am__EXEEXT_1 = ph5diff$(EXEEXT) am__installdirs = "$(DESTDIR)$(bindir)" -binPROGRAMS_INSTALL = $(INSTALL_PROGRAM) am__EXEEXT_2 = h5diffgentest$(EXEEXT) PROGRAMS = $(bin_PROGRAMS) am_h5diff_OBJECTS = h5diff_main.$(OBJEXT) h5diff_common.$(OBJEXT) h5diff_OBJECTS = $(am_h5diff_OBJECTS) h5diff_LDADD = $(LDADD) h5diff_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +h5diff_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(h5diff_LDFLAGS) \ + $(LDFLAGS) -o $@ am_h5diffgentest_OBJECTS = h5diffgentest.$(OBJEXT) h5diffgentest_OBJECTS = $(am_h5diffgentest_OBJECTS) h5diffgentest_LDADD = $(LDADD) @@ -83,6 +88,7 @@ ph5diff_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles +am__mv = mv -f COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ @@ -98,6 +104,8 @@ DIST_SOURCES = $(h5diff_SOURCES) $(h5diffgentest_SOURCES) \ $(ph5diff_SOURCES) ETAGS = etags CTAGS = ctags +am__tty_colors = \ +red=; grn=; lgn=; blu=; std= DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ @@ -212,6 +220,7 @@ PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ PACKAGE_NAME = @PACKAGE_NAME@ PACKAGE_STRING = @PACKAGE_STRING@ PACKAGE_TARNAME = @PACKAGE_TARNAME@ +PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ @@ -303,6 +312,7 @@ sharedstatedir = @sharedstatedir@ srcdir = @srcdir@ sysconfdir = @sysconfdir@ target_alias = @target_alias@ +top_build_prefix = @top_build_prefix@ top_builddir = @top_builddir@ top_srcdir = @top_srcdir@ @@ -360,6 +370,9 @@ INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib @BUILD_PARALLEL_CONDITIONAL_TRUE@H5PDIFF = ph5diff @BUILD_PARALLEL_CONDITIONAL_TRUE@TEST_SCRIPT_PARA = $(srcdir)/testph5diff.sh +# Add h5diff specific linker flags here +h5diff_LDFLAGS = $(LT_STATIC_EXEC) + # Test programs and scripts TEST_PROG = h5diffgentest TEST_SCRIPT = $(srcdir)/testh5diff.sh @@ -403,9 +416,9 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir exit 1;; \ esac; \ done; \ - echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5diff/Makefile'; \ - cd $(top_srcdir) && \ - $(AUTOMAKE) --foreign tools/h5diff/Makefile + echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5diff/Makefile'; \ + $(am__cd) $(top_srcdir) && \ + $(AUTOMAKE) --foreign tools/h5diff/Makefile .PRECIOUS: Makefile Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status @case '$?' in \ @@ -423,44 +436,62 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +$(am__aclocal_m4_deps): install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - if test -f $$p \ - || test -f $$p1 \ - ; then \ - f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \ - $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \ - else :; fi; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + for p in $$list; do echo "$$p $$p"; done | \ + sed 's/$(EXEEXT)$$//' | \ + while read p p1; do if test -f $$p || test -f $$p1; \ + then echo "$$p"; echo "$$p"; else :; fi; \ + done | \ + sed -e 'p;s,.*/,,;n;h' -e 's|.*|.|' \ + -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \ + sed 'N;N;N;s,\n, ,g' | \ + $(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \ + { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \ + if ($$2 == $$4) files[d] = files[d] " " $$1; \ + else { print "f", $$3 "/" $$4, $$1; } } \ + END { for (d in files) print "f", d, files[d] }' | \ + while read type dir files; do \ + if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \ + test -z "$$files" || { \ + echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \ + $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \ + } \ + ; done uninstall-binPROGRAMS: @$(NORMAL_UNINSTALL) - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \ - rm -f "$(DESTDIR)$(bindir)/$$f"; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + files=`for p in $$list; do echo "$$p"; done | \ + sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \ + -e 's/$$/$(EXEEXT)/' `; \ + test -n "$$list" || exit 0; \ + echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ + cd "$(DESTDIR)$(bindir)" && rm -f $$files clean-binPROGRAMS: - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(bin_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list clean-checkPROGRAMS: - @list='$(check_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(check_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list h5diff$(EXEEXT): $(h5diff_OBJECTS) $(h5diff_DEPENDENCIES) @rm -f h5diff$(EXEEXT) - $(LINK) $(h5diff_OBJECTS) $(h5diff_LDADD) $(LIBS) + $(h5diff_LINK) $(h5diff_OBJECTS) $(h5diff_LDADD) $(LIBS) h5diffgentest$(EXEEXT): $(h5diffgentest_OBJECTS) $(h5diffgentest_DEPENDENCIES) @rm -f h5diffgentest$(EXEEXT) $(LINK) $(h5diffgentest_OBJECTS) $(h5diffgentest_LDADD) $(LIBS) @@ -481,21 +512,21 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< @@ -518,7 +549,7 @@ tags: TAGS TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ + set x; \ here=`pwd`; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ @@ -526,29 +557,34 @@ TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \ + shift; \ + if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \ test -n "$$unique" || unique=$$empty_fix; \ - $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ - $$tags $$unique; \ + if test $$# -gt 0; then \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + "$$@" $$unique; \ + else \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + $$unique; \ + fi; \ fi ctags: CTAGS CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - test -z "$(CTAGS_ARGS)$$tags$$unique" \ + test -z "$(CTAGS_ARGS)$$unique" \ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \ - $$tags $$unique + $$unique GTAGS: here=`$(am__cd) $(top_builddir) && pwd` \ - && cd $(top_srcdir) \ - && gtags -i $(GTAGS_ARGS) $$here + && $(am__cd) $(top_srcdir) \ + && gtags -i $(GTAGS_ARGS) "$$here" distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -569,13 +605,17 @@ distdir: $(DISTFILES) if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ if test -d $$d/$$file; then \ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ + if test -d "$(distdir)/$$file"; then \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ + fi; \ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ - cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ fi; \ - cp -pR $$d/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \ else \ - test -f $(distdir)/$$file \ - || cp -p $$d/$$file $(distdir)/$$file \ + test -f "$(distdir)/$$file" \ + || cp -p $$d/$$file "$(distdir)/$$file" \ || exit 1; \ fi; \ done @@ -608,6 +648,7 @@ clean-generic: distclean-generic: -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) + -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES) maintainer-clean-generic: @echo "This command is intended for maintainers to use" @@ -629,6 +670,8 @@ dvi-am: html: html-am +html-am: + info: info-am info-am: @@ -637,18 +680,28 @@ install-data-am: install-dvi: install-dvi-am +install-dvi-am: + install-exec-am: install-binPROGRAMS install-html: install-html-am +install-html-am: + install-info: install-info-am +install-info-am: + install-man: install-pdf: install-pdf-am +install-pdf-am: + install-ps: install-ps-am +install-ps-am: + installcheck-am: maintainer-clean: maintainer-clean-am @@ -671,7 +724,7 @@ ps-am: uninstall-am: uninstall-binPROGRAMS -.MAKE: install-am install-strip +.MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ @@ -894,6 +947,7 @@ check-vfd: $(LIB) $(PROGS) $(TESTS) HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ fi; \ done + # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: diff --git a/tools/h5diff/h5diffgentest.c b/tools/h5diff/h5diffgentest.c index 95b28ee..cae79b6 100644 --- a/tools/h5diff/h5diffgentest.c +++ b/tools/h5diff/h5diffgentest.c @@ -331,7 +331,24 @@ int test_basic(const char *fname1, const char *fname2, const char *fname3) write_dset(gid1,1,dims1,"fp17",H5T_NATIVE_DOUBLE,data17); write_dset(gid1,1,dims1,"fp18",H5T_NATIVE_DOUBLE,data18); + } + + /*------------------------------------------------------------------------ + * INFINITY values + *------------------------------------------------------------------------ + */ + { + float data19[6]; + double data20[6]; + + data19[0] = data19[1] = data19[2] = log(0); + data19[3] = data19[4] = data19[5] = -log(0); + + data20[0] = data20[1] = data20[2] = log(0); + data20[3] = data20[4] = data20[5] = -log(0); + write_dset(gid1,1,dims1,"fp19",H5T_NATIVE_FLOAT,data19); + write_dset(gid1,1,dims1,"fp20",H5T_NATIVE_DOUBLE,data20); } /*------------------------------------------------------------------------- diff --git a/tools/h5diff/testfiles/h5diff_17.txt b/tools/h5diff/testfiles/h5diff_17.txt index ac04bd4..dce5ef5 100644 --- a/tools/h5diff/testfiles/h5diff_17.txt +++ b/tools/h5diff/testfiles/h5diff_17.txt @@ -7,6 +7,8 @@ file1 file2 x /g1/d2 x x /g1/dset1 x /g1/dset10 + x /g1/dset11 + x /g1/dset12 x /g1/dset2 x /g1/dset3 x /g1/dset4 @@ -20,7 +22,9 @@ file1 file2 x /g1/fp16 x /g1/fp17 x /g1/fp18 + x /g1/fp19 x /g1/fp2 + x /g1/fp20 x /g1/ld x /g2 x /g2/dset1 diff --git a/tools/h5diff/testfiles/h5diff_171.txt b/tools/h5diff/testfiles/h5diff_171.txt new file mode 100644 index 0000000..7ee0711 --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_171.txt @@ -0,0 +1,2 @@ +dataset: </g1/fp19> and </g1/fp19> +0 differences found diff --git a/tools/h5diff/testfiles/h5diff_172.txt b/tools/h5diff/testfiles/h5diff_172.txt new file mode 100644 index 0000000..e2d1b7d --- /dev/null +++ b/tools/h5diff/testfiles/h5diff_172.txt @@ -0,0 +1,2 @@ +dataset: </g1/fp20> and </g1/fp20> +0 differences found diff --git a/tools/h5diff/testfiles/h5diff_basic1.h5 b/tools/h5diff/testfiles/h5diff_basic1.h5 Binary files differindex 227c934..4ed83c8 100644 --- a/tools/h5diff/testfiles/h5diff_basic1.h5 +++ b/tools/h5diff/testfiles/h5diff_basic1.h5 diff --git a/tools/h5diff/testh5diff.sh b/tools/h5diff/testh5diff.sh index d641255..4167243 100755 --- a/tools/h5diff/testh5diff.sh +++ b/tools/h5diff/testh5diff.sh @@ -326,6 +326,14 @@ TOOLTEST h5diff_16_3.txt -v -p 0.02 $FILE1 $FILE1 g1/dset9 g1/dset10 TESTING $H5DIFF -v $SRCFILE1 $SRCFILE2 TOOLTEST h5diff_17.txt -v $FILE1 $FILE2 +# 1.8 test 32-bit INFINITY +TESTING $H5DIFF $SRCFILE1 $SRCFILE1 /g1/fp19 +TOOLTEST h5diff_171.txt -v $SRCFILE1 $SRCFILE1 /g1/fp19 + +# 1.8 test 64-bit INFINITY +TESTING $H5DIFF $SRCFILE1 $SRCFILE1 /g1/fp20 +TOOLTEST h5diff_172.txt -v $SRCFILE1 $SRCFILE1 /g1/fp20 + # 1.8 quiet mode TESTING $H5DIFF -q $SRCFILE1 $SRCFILE2 TOOLTEST h5diff_18.txt -q $FILE1 $FILE2 diff --git a/tools/h5dump/Makefile.am b/tools/h5dump/Makefile.am index 599c203..992586b 100644 --- a/tools/h5dump/Makefile.am +++ b/tools/h5dump/Makefile.am @@ -34,6 +34,9 @@ SCRIPT_DEPEND=h5dump$(EXEEXT) # Our main target, the h5dump tool. bin_PROGRAMS=h5dump +# Add h5dump specific linker flags here +h5dump_LDFLAGS = $(LT_STATIC_EXEC) + # All the programs depend on the hdf5 and h5tools libraries LDADD=$(LIBH5TOOLS) $(LIBHDF5) diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in index 0d77850..be8cf96 100644 --- a/tools/h5dump/Makefile.in +++ b/tools/h5dump/Makefile.in @@ -1,8 +1,9 @@ -# Makefile.in generated by automake 1.10.2 from Makefile.am. +# Makefile.in generated by automake 1.11 from Makefile.am. # @configure_input@ # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. +# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, +# Inc. # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,8 +34,9 @@ VPATH = @srcdir@ pkgdatadir = $(datadir)/@PACKAGE@ -pkglibdir = $(libdir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkglibexecdir = $(libexecdir)/@PACKAGE@ am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd install_sh_DATA = $(install_sh) -c -m 644 install_sh_PROGRAM = $(install_sh) -c @@ -64,8 +66,8 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = testh5dump.sh testh5dumpxml.sh +CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" -binPROGRAMS_INSTALL = $(INSTALL_PROGRAM) am__EXEEXT_1 = h5dumpgentest$(EXEEXT) PROGRAMS = $(bin_PROGRAMS) binread_SOURCES = binread.c @@ -76,6 +78,9 @@ h5dump_SOURCES = h5dump.c h5dump_OBJECTS = h5dump.$(OBJEXT) h5dump_LDADD = $(LDADD) h5dump_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +h5dump_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(h5dump_LDFLAGS) \ + $(LDFLAGS) -o $@ h5dumpgentest_SOURCES = h5dumpgentest.c h5dumpgentest_OBJECTS = h5dumpgentest.$(OBJEXT) h5dumpgentest_LDADD = $(LDADD) @@ -83,6 +88,7 @@ h5dumpgentest_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles +am__mv = mv -f COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ @@ -96,6 +102,8 @@ SOURCES = binread.c h5dump.c h5dumpgentest.c DIST_SOURCES = binread.c h5dump.c h5dumpgentest.c ETAGS = etags CTAGS = ctags +am__tty_colors = \ +red=; grn=; lgn=; blu=; std= DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ @@ -210,6 +218,7 @@ PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ PACKAGE_NAME = @PACKAGE_NAME@ PACKAGE_STRING = @PACKAGE_STRING@ PACKAGE_TARNAME = @PACKAGE_TARNAME@ +PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ @@ -301,6 +310,7 @@ sharedstatedir = @sharedstatedir@ srcdir = @srcdir@ sysconfdir = @sysconfdir@ target_alias = @target_alias@ +top_build_prefix = @top_build_prefix@ top_builddir = @top_builddir@ top_srcdir = @top_srcdir@ @@ -358,6 +368,9 @@ TEST_SCRIPT = testh5dump.sh testh5dumpxml.sh check_SCRIPTS = $(TEST_SCRIPT) SCRIPT_DEPEND = h5dump$(EXEEXT) +# Add h5dump specific linker flags here +h5dump_LDFLAGS = $(LT_STATIC_EXEC) + # All the programs depend on the hdf5 and h5tools libraries LDADD = $(LIBH5TOOLS) $(LIBHDF5) DISTCLEANFILES = testh5dump.sh @@ -390,9 +403,9 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir exit 1;; \ esac; \ done; \ - echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5dump/Makefile'; \ - cd $(top_srcdir) && \ - $(AUTOMAKE) --foreign tools/h5dump/Makefile + echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5dump/Makefile'; \ + $(am__cd) $(top_srcdir) && \ + $(AUTOMAKE) --foreign tools/h5dump/Makefile .PRECIOUS: Makefile Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status @case '$?' in \ @@ -410,6 +423,7 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +$(am__aclocal_m4_deps): testh5dump.sh: $(top_builddir)/config.status $(srcdir)/testh5dump.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ testh5dumpxml.sh: $(top_builddir)/config.status $(srcdir)/testh5dumpxml.sh.in @@ -417,44 +431,61 @@ testh5dumpxml.sh: $(top_builddir)/config.status $(srcdir)/testh5dumpxml.sh.in install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - if test -f $$p \ - || test -f $$p1 \ - ; then \ - f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \ - $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \ - else :; fi; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + for p in $$list; do echo "$$p $$p"; done | \ + sed 's/$(EXEEXT)$$//' | \ + while read p p1; do if test -f $$p || test -f $$p1; \ + then echo "$$p"; echo "$$p"; else :; fi; \ + done | \ + sed -e 'p;s,.*/,,;n;h' -e 's|.*|.|' \ + -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \ + sed 'N;N;N;s,\n, ,g' | \ + $(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \ + { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \ + if ($$2 == $$4) files[d] = files[d] " " $$1; \ + else { print "f", $$3 "/" $$4, $$1; } } \ + END { for (d in files) print "f", d, files[d] }' | \ + while read type dir files; do \ + if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \ + test -z "$$files" || { \ + echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \ + $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \ + } \ + ; done uninstall-binPROGRAMS: @$(NORMAL_UNINSTALL) - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \ - rm -f "$(DESTDIR)$(bindir)/$$f"; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + files=`for p in $$list; do echo "$$p"; done | \ + sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \ + -e 's/$$/$(EXEEXT)/' `; \ + test -n "$$list" || exit 0; \ + echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ + cd "$(DESTDIR)$(bindir)" && rm -f $$files clean-binPROGRAMS: - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(bin_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list clean-checkPROGRAMS: - @list='$(check_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(check_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list binread$(EXEEXT): $(binread_OBJECTS) $(binread_DEPENDENCIES) @rm -f binread$(EXEEXT) $(LINK) $(binread_OBJECTS) $(binread_LDADD) $(LIBS) h5dump$(EXEEXT): $(h5dump_OBJECTS) $(h5dump_DEPENDENCIES) @rm -f h5dump$(EXEEXT) - $(LINK) $(h5dump_OBJECTS) $(h5dump_LDADD) $(LIBS) + $(h5dump_LINK) $(h5dump_OBJECTS) $(h5dump_LDADD) $(LIBS) h5dumpgentest$(EXEEXT): $(h5dumpgentest_OBJECTS) $(h5dumpgentest_DEPENDENCIES) @rm -f h5dumpgentest$(EXEEXT) $(LINK) $(h5dumpgentest_OBJECTS) $(h5dumpgentest_LDADD) $(LIBS) @@ -471,21 +502,21 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< @@ -508,7 +539,7 @@ tags: TAGS TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ + set x; \ here=`pwd`; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ @@ -516,29 +547,34 @@ TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \ + shift; \ + if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \ test -n "$$unique" || unique=$$empty_fix; \ - $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ - $$tags $$unique; \ + if test $$# -gt 0; then \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + "$$@" $$unique; \ + else \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + $$unique; \ + fi; \ fi ctags: CTAGS CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - test -z "$(CTAGS_ARGS)$$tags$$unique" \ + test -z "$(CTAGS_ARGS)$$unique" \ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \ - $$tags $$unique + $$unique GTAGS: here=`$(am__cd) $(top_builddir) && pwd` \ - && cd $(top_srcdir) \ - && gtags -i $(GTAGS_ARGS) $$here + && $(am__cd) $(top_srcdir) \ + && gtags -i $(GTAGS_ARGS) "$$here" distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -559,13 +595,17 @@ distdir: $(DISTFILES) if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ if test -d $$d/$$file; then \ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ + if test -d "$(distdir)/$$file"; then \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ + fi; \ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ - cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ fi; \ - cp -pR $$d/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \ else \ - test -f $(distdir)/$$file \ - || cp -p $$d/$$file $(distdir)/$$file \ + test -f "$(distdir)/$$file" \ + || cp -p $$d/$$file "$(distdir)/$$file" \ || exit 1; \ fi; \ done @@ -598,6 +638,7 @@ clean-generic: distclean-generic: -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) + -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES) -test -z "$(DISTCLEANFILES)" || rm -f $(DISTCLEANFILES) maintainer-clean-generic: @@ -620,6 +661,8 @@ dvi-am: html: html-am +html-am: + info: info-am info-am: @@ -628,18 +671,28 @@ install-data-am: install-dvi: install-dvi-am +install-dvi-am: + install-exec-am: install-binPROGRAMS install-html: install-html-am +install-html-am: + install-info: install-info-am +install-info-am: + install-man: install-pdf: install-pdf-am +install-pdf-am: + install-ps: install-ps-am +install-ps-am: + installcheck-am: maintainer-clean: maintainer-clean-am @@ -662,7 +715,7 @@ ps-am: uninstall-am: uninstall-binPROGRAMS -.MAKE: install-am install-strip +.MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ @@ -885,6 +938,7 @@ check-vfd: $(LIB) $(PROGS) $(TESTS) HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ fi; \ done + # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c index 4b7211c..1780cbe 100644 --- a/tools/h5dump/h5dump.c +++ b/tools/h5dump/h5dump.c @@ -745,10 +745,11 @@ table_list_add(hid_t oid, unsigned long file_no) { size_t idx; /* Index of table to use */ find_objs_t info; - void *tmp_ptr; /* Allocate space if necessary */ if(table_list.nused == table_list.nalloc) { + void *tmp_ptr; + table_list.nalloc = MAX(1, table_list.nalloc * 2); if(NULL == (tmp_ptr = HDrealloc(table_list.tables, table_list.nalloc * sizeof(table_list.tables[0])))) return -1; @@ -1467,7 +1468,7 @@ dump_selected_attr(hid_t loc_id, const char *name) int j; j = (int)HDstrlen(name) - 1; - obj_name = HDmalloc((size_t)j + 2); + obj_name = (char *)HDmalloc((size_t)j + 2); /* find the last / */ while(name[j] != '/' && j >= 0) @@ -1559,7 +1560,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED herr_t ret = SUCCEED; /* Build the object's path name */ - obj_path = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2); + obj_path = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2); HDassert(obj_path); HDstrcpy(obj_path, prefix); HDstrcat(obj_path, "/"); @@ -1718,7 +1719,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED switch(linfo->type) { case H5L_TYPE_SOFT: indentation(indent); - targbuf = HDmalloc(linfo->u.val_size); + targbuf = (char *)HDmalloc(linfo->u.val_size); HDassert(targbuf); if(!doxml) { @@ -1748,7 +1749,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED char *t_link_path; int res; - t_link_path = HDmalloc(HDstrlen(prefix) + linfo->u.val_size + 1); + t_link_path = (char *)HDmalloc(HDstrlen(prefix) + linfo->u.val_size + 1); if(targbuf[0] == '/') HDstrcpy(t_link_path, targbuf); else { @@ -1811,7 +1812,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void UNUSED break; case H5L_TYPE_EXTERNAL: - targbuf = HDmalloc(linfo->u.val_size); + targbuf = (char *)HDmalloc(linfo->u.val_size); HDassert(targbuf); indentation(indent); @@ -2083,7 +2084,7 @@ dump_group(hid_t gid, const char *name) } - tmp = HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2); + tmp = (char *)HDmalloc(HDstrlen(prefix) + HDstrlen(name) + 2); HDstrcpy(tmp, prefix); indentation(indent); begin_obj(dump_header_format->groupbegin, name, dump_header_format->groupblockbegin); @@ -2787,9 +2788,7 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id) hsize_t dims[H5S_MAX_RANK]; int ndims = H5Sget_simple_extent_dims( sid, dims, NULL); hsize_t nelmts = 1; - hsize_t size; double ratio = 0; - hssize_t a, b; int ok = 0; /* only print the compression ratio for these filters */ @@ -2812,19 +2811,18 @@ dump_dcpl(hid_t dcpl_id,hid_t type_id, hid_t obj_id) if (ndims && ok ) { + hsize_t uncomp_size; for (i = 0; i < ndims; i++) { nelmts *= dims[i]; } - size = nelmts * datum_size; - - a = size; b = storage_size; + uncomp_size = nelmts * datum_size; /* compression ratio = uncompressed size / compressed size */ - if (b!=0) - ratio = (double) a / (double) b; + if (storage_size != 0) + ratio = (double) uncomp_size / (double) storage_size; HDfprintf(stdout, "SIZE %Hu (%.3f:1 COMPRESSION)\n ", storage_size, ratio); diff --git a/tools/h5dump/h5dumpgentest.c b/tools/h5dump/h5dumpgentest.c index c7e1445..c0d5801 100644 --- a/tools/h5dump/h5dumpgentest.c +++ b/tools/h5dump/h5dumpgentest.c @@ -144,7 +144,7 @@ return -1; const H5L_class_t UD_link_class[1] = {{ H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */ - MY_LINKCLASS, /* Link type id number */ + (H5L_type_t)MY_LINKCLASS, /* Link type id number */ "UD link class", /* name for debugging */ NULL, /* Creation callback */ NULL, /* Move/rename callback */ @@ -236,6 +236,13 @@ typedef struct s1_t { /* "File 51" macros */ #define F51_MAX_NAME_LEN ((64*1024)+1024) +/* "File 64" macros */ +#define F64_FILE "tarray8.h5" +#define F64_DATASET "DS1" +#define F64_DIM0 1 +#define F64_ARRAY_BUF_LEN (4*1024) +#define F64_DIM1 (F64_ARRAY_BUF_LEN / sizeof(int) + 1) + static void gent_group(void) { @@ -517,9 +524,9 @@ static void gent_udlink(void) /* This ud link will dangle, but that's okay */ fid = H5Fcreate(FILE54, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - H5Lcreate_ud(fid, "udlink1", MY_LINKCLASS, NULL, 0, H5P_DEFAULT, H5P_DEFAULT); + H5Lcreate_ud(fid, "udlink1", (H5L_type_t)MY_LINKCLASS, NULL, 0, H5P_DEFAULT, H5P_DEFAULT); strcpy(buf, "foo"); - H5Lcreate_ud(fid, "udlink2", MY_LINKCLASS, buf, 4, H5P_DEFAULT, H5P_DEFAULT); + H5Lcreate_ud(fid, "udlink2", (H5L_type_t)MY_LINKCLASS, buf, 4, H5P_DEFAULT, H5P_DEFAULT); H5Fclose(fid); } @@ -1032,7 +1039,7 @@ static void gent_all(void) /* user-defined link */ H5Lregister(UD_link_class); - H5Lcreate_ud(fid, "/g2/udlink", MY_LINKCLASS, NULL, 0, H5P_DEFAULT, H5P_DEFAULT); + H5Lcreate_ud(fid, "/g2/udlink", (H5L_type_t)MY_LINKCLASS, NULL, 0, H5P_DEFAULT, H5P_DEFAULT); H5Fclose(fid); } @@ -1282,7 +1289,7 @@ static void gent_many(void) /* Create dangling external and UD links */ H5Lcreate_external("somefile", "somepath", fid, "/g8/elink", H5P_DEFAULT, H5P_DEFAULT); H5Lregister(UD_link_class); - H5Lcreate_ud(fid, "/g8/udlink", MY_LINKCLASS, NULL, 0, H5P_DEFAULT, H5P_DEFAULT); + H5Lcreate_ud(fid, "/g8/udlink", (H5L_type_t)MY_LINKCLASS, NULL, 0, H5P_DEFAULT, H5P_DEFAULT); /* Create links to external and UD links */ ret= H5Lcreate_soft("/g8/elink", fid, "/g7/slink5", H5P_DEFAULT, H5P_DEFAULT); @@ -2813,48 +2820,59 @@ static void gent_array7(void) assert(ret >= 0); } +/* Test the boundary of the display output buffer at the reallocation event */ static void gent_array8(void) { - int *buf; /* information to write */ - hid_t fid; /* HDF5 File ID */ - hid_t did; /* dataset ID */ - hid_t sid; /* dataspace ID */ - hid_t tid; /* datatype ID */ - size_t size; - hsize_t sdims[] = {1}; - hsize_t tdims[] = {H5TOOLS_BUFSIZE / sizeof(int) + 1}; - int i; - herr_t ret; - - size = ( H5TOOLS_BUFSIZE / sizeof(int) + 1 ) * sizeof(int); - buf = malloc( size ); - - for( i = 0; i < H5TOOLS_BUFSIZE / sizeof(int) + 1; i++) - buf[i] = i; - - /* create file */ - fid = H5Fcreate(FILE64, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - - /* create a type larger than H5TOOLS_BUFSIZE */ - tid = H5Tarray_create2(H5T_NATIVE_INT, 1, tdims); - size = H5Tget_size(tid); - sid = H5Screate_simple(1, sdims, NULL); - did = H5Dcreate2(fid, "dset", tid, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - ret = H5Dwrite(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); - assert(ret >= 0); + hid_t file = -1; /* Handles */ + hid_t filetype = -1; /* Handles */ + hid_t space = -1; /* Handles */ + hid_t dset = -1; /* Handles */ + herr_t status = -1; + hsize_t sdims[] = {F64_DIM0}; + hsize_t tdims[] = {F64_DIM1}; + int wdata[(F64_DIM1) * sizeof(int)]; /* Write buffer */ + int ndims; + int i; + /* + * Initialize data. i is the element in the dataspace, j and k the + * elements within the array datatype. + */ + for (i=0; i<F64_DIM1; i++) + wdata[i] = i; - /* close */ - ret = H5Dclose(did); - assert(ret >= 0); - ret = H5Tclose(tid); - assert(ret >= 0); - ret = H5Sclose(sid); - assert(ret >= 0); + /* + * Create a new file using the default properties. + */ + file = H5Fcreate (F64_FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - ret = H5Fclose(fid); - assert(ret >= 0); - free( buf ); + /* + * Create array datatypes for file and memory. + */ + filetype = H5Tarray_create2 (H5T_NATIVE_INT, 1, tdims); + + /* + * Create dataspace. Setting maximum size to NULL sets the maximum + * size to be the current size. + */ + space = H5Screate_simple (1, sdims, NULL); + + /* + * Create the dataset and write the array data to it. + */ + if(file>=0 && filetype>=0 && space>=0) { + dset = H5Dcreate2 (file, F64_DATASET, filetype, space, H5P_DEFAULT, H5P_DEFAULT, + H5P_DEFAULT); + if(dset>=0) + status = H5Dwrite (dset, filetype, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata); + } + /* + * Close and release resources. + */ + status = H5Dclose (dset); + status = H5Sclose (space); + status = H5Tclose (filetype); + status = H5Fclose (file); } static void gent_empty(void) @@ -5096,7 +5114,7 @@ static void gent_fcontents(void) assert(ret >= 0); /* dangling udlink */ - ret = H5Lcreate_ud(fid, "udlink", MY_LINKCLASS, NULL, 0, H5P_DEFAULT, H5P_DEFAULT); + ret = H5Lcreate_ud(fid, "udlink", (H5L_type_t)MY_LINKCLASS, NULL, 0, H5P_DEFAULT, H5P_DEFAULT); assert(ret >= 0); /*------------------------------------------------------------------------- @@ -6348,6 +6366,7 @@ int main(void) gent_array5(); gent_array6(); gent_array7(); + gent_array8(); gent_empty(); gent_group_comments(); gent_split_file(); diff --git a/tools/h5dump/testh5dump.sh.in b/tools/h5dump/testh5dump.sh.in index 07ed852..beb8edc 100644 --- a/tools/h5dump/testh5dump.sh.in +++ b/tools/h5dump/testh5dump.sh.in @@ -300,6 +300,7 @@ TOOLTEST tarray4.ddl tarray4.h5 TOOLTEST tarray5.ddl tarray5.h5 TOOLTEST tarray6.ddl tarray6.h5 TOOLTEST tarray7.ddl tarray7.h5 +TOOLTEST tarray8.ddl tarray8.h5 # test for files with empty data TOOLTEST tempty.ddl tempty.h5 diff --git a/tools/h5import/Makefile.am b/tools/h5import/Makefile.am index a88cb36..2202f5f 100644 --- a/tools/h5import/Makefile.am +++ b/tools/h5import/Makefile.am @@ -34,6 +34,9 @@ SCRIPT_DEPEND=h5import$(EXEEXT) # Our main targets bin_PROGRAMS=h5import +# Add h5import specific linker flags here +h5import_LDFLAGS = $(LT_STATIC_EXEC) + # All programs depend on the main hdf5 library and the tools library LDADD=$(LIBH5TOOLS) $(LIBHDF5) diff --git a/tools/h5import/Makefile.in b/tools/h5import/Makefile.in index 9314d90..f9e88ae 100755 --- a/tools/h5import/Makefile.in +++ b/tools/h5import/Makefile.in @@ -1,8 +1,9 @@ -# Makefile.in generated by automake 1.10.2 from Makefile.am. +# Makefile.in generated by automake 1.11 from Makefile.am. # @configure_input@ # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. +# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, +# Inc. # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,8 +34,9 @@ VPATH = @srcdir@ pkgdatadir = $(datadir)/@PACKAGE@ -pkglibdir = $(libdir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkglibexecdir = $(libexecdir)/@PACKAGE@ am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd install_sh_DATA = $(install_sh) -c -m 644 install_sh_PROGRAM = $(install_sh) -c @@ -63,14 +65,17 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = +CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" -binPROGRAMS_INSTALL = $(INSTALL_PROGRAM) am__EXEEXT_1 = h5importtest$(EXEEXT) PROGRAMS = $(bin_PROGRAMS) h5import_SOURCES = h5import.c h5import_OBJECTS = h5import.$(OBJEXT) h5import_LDADD = $(LDADD) h5import_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +h5import_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(h5import_LDFLAGS) \ + $(LDFLAGS) -o $@ h5importtest_SOURCES = h5importtest.c h5importtest_OBJECTS = h5importtest.$(OBJEXT) h5importtest_LDADD = $(LDADD) @@ -78,6 +83,7 @@ h5importtest_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles +am__mv = mv -f COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ @@ -91,6 +97,8 @@ SOURCES = h5import.c h5importtest.c DIST_SOURCES = h5import.c h5importtest.c ETAGS = etags CTAGS = ctags +am__tty_colors = \ +red=; grn=; lgn=; blu=; std= DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ @@ -205,6 +213,7 @@ PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ PACKAGE_NAME = @PACKAGE_NAME@ PACKAGE_STRING = @PACKAGE_STRING@ PACKAGE_TARNAME = @PACKAGE_TARNAME@ +PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ @@ -296,6 +305,7 @@ sharedstatedir = @sharedstatedir@ srcdir = @srcdir@ sysconfdir = @sysconfdir@ target_alias = @target_alias@ +top_build_prefix = @top_build_prefix@ top_builddir = @top_builddir@ top_srcdir = @top_srcdir@ @@ -350,6 +360,9 @@ TEST_SCRIPT = $(srcdir)/h5importtestutil.sh check_SCRIPT = h5importtestutil.sh SCRIPT_DEPEND = h5import$(EXEEXT) +# Add h5import specific linker flags here +h5import_LDFLAGS = $(LT_STATIC_EXEC) + # All programs depend on the main hdf5 library and the tools library LDADD = $(LIBH5TOOLS) $(LIBHDF5) @@ -381,9 +394,9 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir exit 1;; \ esac; \ done; \ - echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5import/Makefile'; \ - cd $(top_srcdir) && \ - $(AUTOMAKE) --foreign tools/h5import/Makefile + echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5import/Makefile'; \ + $(am__cd) $(top_srcdir) && \ + $(AUTOMAKE) --foreign tools/h5import/Makefile .PRECIOUS: Makefile Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status @case '$?' in \ @@ -401,44 +414,62 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +$(am__aclocal_m4_deps): install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - if test -f $$p \ - || test -f $$p1 \ - ; then \ - f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \ - $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \ - else :; fi; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + for p in $$list; do echo "$$p $$p"; done | \ + sed 's/$(EXEEXT)$$//' | \ + while read p p1; do if test -f $$p || test -f $$p1; \ + then echo "$$p"; echo "$$p"; else :; fi; \ + done | \ + sed -e 'p;s,.*/,,;n;h' -e 's|.*|.|' \ + -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \ + sed 'N;N;N;s,\n, ,g' | \ + $(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \ + { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \ + if ($$2 == $$4) files[d] = files[d] " " $$1; \ + else { print "f", $$3 "/" $$4, $$1; } } \ + END { for (d in files) print "f", d, files[d] }' | \ + while read type dir files; do \ + if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \ + test -z "$$files" || { \ + echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \ + $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \ + } \ + ; done uninstall-binPROGRAMS: @$(NORMAL_UNINSTALL) - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \ - rm -f "$(DESTDIR)$(bindir)/$$f"; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + files=`for p in $$list; do echo "$$p"; done | \ + sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \ + -e 's/$$/$(EXEEXT)/' `; \ + test -n "$$list" || exit 0; \ + echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ + cd "$(DESTDIR)$(bindir)" && rm -f $$files clean-binPROGRAMS: - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(bin_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list clean-checkPROGRAMS: - @list='$(check_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(check_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list h5import$(EXEEXT): $(h5import_OBJECTS) $(h5import_DEPENDENCIES) @rm -f h5import$(EXEEXT) - $(LINK) $(h5import_OBJECTS) $(h5import_LDADD) $(LIBS) + $(h5import_LINK) $(h5import_OBJECTS) $(h5import_LDADD) $(LIBS) h5importtest$(EXEEXT): $(h5importtest_OBJECTS) $(h5importtest_DEPENDENCIES) @rm -f h5importtest$(EXEEXT) $(LINK) $(h5importtest_OBJECTS) $(h5importtest_LDADD) $(LIBS) @@ -454,21 +485,21 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< @@ -491,7 +522,7 @@ tags: TAGS TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ + set x; \ here=`pwd`; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ @@ -499,29 +530,34 @@ TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \ + shift; \ + if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \ test -n "$$unique" || unique=$$empty_fix; \ - $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ - $$tags $$unique; \ + if test $$# -gt 0; then \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + "$$@" $$unique; \ + else \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + $$unique; \ + fi; \ fi ctags: CTAGS CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - test -z "$(CTAGS_ARGS)$$tags$$unique" \ + test -z "$(CTAGS_ARGS)$$unique" \ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \ - $$tags $$unique + $$unique GTAGS: here=`$(am__cd) $(top_builddir) && pwd` \ - && cd $(top_srcdir) \ - && gtags -i $(GTAGS_ARGS) $$here + && $(am__cd) $(top_srcdir) \ + && gtags -i $(GTAGS_ARGS) "$$here" distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -542,13 +578,17 @@ distdir: $(DISTFILES) if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ if test -d $$d/$$file; then \ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ + if test -d "$(distdir)/$$file"; then \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ + fi; \ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ - cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ fi; \ - cp -pR $$d/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \ else \ - test -f $(distdir)/$$file \ - || cp -p $$d/$$file $(distdir)/$$file \ + test -f "$(distdir)/$$file" \ + || cp -p $$d/$$file "$(distdir)/$$file" \ || exit 1; \ fi; \ done @@ -581,6 +621,7 @@ clean-generic: distclean-generic: -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) + -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES) maintainer-clean-generic: @echo "This command is intended for maintainers to use" @@ -602,6 +643,8 @@ dvi-am: html: html-am +html-am: + info: info-am info-am: @@ -610,18 +653,28 @@ install-data-am: install-dvi: install-dvi-am +install-dvi-am: + install-exec-am: install-binPROGRAMS install-html: install-html-am +install-html-am: + install-info: install-info-am +install-info-am: + install-man: install-pdf: install-pdf-am +install-pdf-am: + install-ps: install-ps-am +install-ps-am: + installcheck-am: maintainer-clean: maintainer-clean-am @@ -644,7 +697,7 @@ ps-am: uninstall-am: uninstall-binPROGRAMS -.MAKE: install-am install-strip +.MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ @@ -867,6 +920,7 @@ check-vfd: $(LIB) $(PROGS) $(TESTS) HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ fi; \ done + # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: diff --git a/tools/h5jam/Makefile.am b/tools/h5jam/Makefile.am index 2fd7e86..d89a2d2 100644 --- a/tools/h5jam/Makefile.am +++ b/tools/h5jam/Makefile.am @@ -27,6 +27,10 @@ bin_PROGRAMS=h5jam h5unjam check_PROGRAMS=tellub h5jamgentest getub TEST_SCRIPT=testh5jam.sh +# Add h5jam and h5unjam specific linker flags here +h5jam_LDFLAGS = $(LT_STATIC_EXEC) +h5unjam_LDFLAGS = $(LT_STATIC_EXEC) + check_SCRIPTS=$(TEST_SCRIPT) SCRIPT_DEPEND=h5jam$(EXEEXT) h5unjam$(EXEEXT) diff --git a/tools/h5jam/Makefile.in b/tools/h5jam/Makefile.in index 87d1c6b..12486a0 100644 --- a/tools/h5jam/Makefile.in +++ b/tools/h5jam/Makefile.in @@ -1,8 +1,9 @@ -# Makefile.in generated by automake 1.10.2 from Makefile.am. +# Makefile.in generated by automake 1.11 from Makefile.am. # @configure_input@ # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. +# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, +# Inc. # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,8 +34,9 @@ VPATH = @srcdir@ pkgdatadir = $(datadir)/@PACKAGE@ -pkglibdir = $(libdir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkglibexecdir = $(libexecdir)/@PACKAGE@ am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd install_sh_DATA = $(install_sh) -c -m 644 install_sh_PROGRAM = $(install_sh) -c @@ -63,8 +65,8 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = testh5jam.sh +CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" -binPROGRAMS_INSTALL = $(INSTALL_PROGRAM) PROGRAMS = $(bin_PROGRAMS) getub_SOURCES = getub.c getub_OBJECTS = getub.$(OBJEXT) @@ -74,6 +76,9 @@ h5jam_SOURCES = h5jam.c h5jam_OBJECTS = h5jam.$(OBJEXT) h5jam_LDADD = $(LDADD) h5jam_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +h5jam_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(h5jam_LDFLAGS) \ + $(LDFLAGS) -o $@ h5jamgentest_SOURCES = h5jamgentest.c h5jamgentest_OBJECTS = h5jamgentest.$(OBJEXT) h5jamgentest_LDADD = $(LDADD) @@ -82,6 +87,9 @@ h5unjam_SOURCES = h5unjam.c h5unjam_OBJECTS = h5unjam.$(OBJEXT) h5unjam_LDADD = $(LDADD) h5unjam_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +h5unjam_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(h5unjam_LDFLAGS) \ + $(LDFLAGS) -o $@ tellub_SOURCES = tellub.c tellub_OBJECTS = tellub.$(OBJEXT) tellub_LDADD = $(LDADD) @@ -89,6 +97,7 @@ tellub_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles +am__mv = mv -f COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ @@ -102,6 +111,8 @@ SOURCES = getub.c h5jam.c h5jamgentest.c h5unjam.c tellub.c DIST_SOURCES = getub.c h5jam.c h5jamgentest.c h5unjam.c tellub.c ETAGS = etags CTAGS = ctags +am__tty_colors = \ +red=; grn=; lgn=; blu=; std= DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ @@ -216,6 +227,7 @@ PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ PACKAGE_NAME = @PACKAGE_NAME@ PACKAGE_STRING = @PACKAGE_STRING@ PACKAGE_TARNAME = @PACKAGE_TARNAME@ +PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ @@ -307,6 +319,7 @@ sharedstatedir = @sharedstatedir@ srcdir = @srcdir@ sysconfdir = @sysconfdir@ target_alias = @target_alias@ +top_build_prefix = @top_build_prefix@ top_builddir = @top_builddir@ top_srcdir = @top_srcdir@ @@ -358,6 +371,10 @@ CHECK_CLEANFILES = *.chkexe *.chklog *.clog *.h5 *.txt # Include src and tools/lib directories INCLUDES = -I$(top_srcdir)/src -I$(top_srcdir)/tools/lib TEST_SCRIPT = testh5jam.sh + +# Add h5jam and h5unjam specific linker flags here +h5jam_LDFLAGS = $(LT_STATIC_EXEC) +h5unjam_LDFLAGS = $(LT_STATIC_EXEC) check_SCRIPTS = $(TEST_SCRIPT) SCRIPT_DEPEND = h5jam$(EXEEXT) h5unjam$(EXEEXT) @@ -393,9 +410,9 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir exit 1;; \ esac; \ done; \ - echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5jam/Makefile'; \ - cd $(top_srcdir) && \ - $(AUTOMAKE) --foreign tools/h5jam/Makefile + echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5jam/Makefile'; \ + $(am__cd) $(top_srcdir) && \ + $(AUTOMAKE) --foreign tools/h5jam/Makefile .PRECIOUS: Makefile Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status @case '$?' in \ @@ -413,55 +430,73 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +$(am__aclocal_m4_deps): testh5jam.sh: $(top_builddir)/config.status $(srcdir)/testh5jam.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - if test -f $$p \ - || test -f $$p1 \ - ; then \ - f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \ - $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \ - else :; fi; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + for p in $$list; do echo "$$p $$p"; done | \ + sed 's/$(EXEEXT)$$//' | \ + while read p p1; do if test -f $$p || test -f $$p1; \ + then echo "$$p"; echo "$$p"; else :; fi; \ + done | \ + sed -e 'p;s,.*/,,;n;h' -e 's|.*|.|' \ + -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \ + sed 'N;N;N;s,\n, ,g' | \ + $(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \ + { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \ + if ($$2 == $$4) files[d] = files[d] " " $$1; \ + else { print "f", $$3 "/" $$4, $$1; } } \ + END { for (d in files) print "f", d, files[d] }' | \ + while read type dir files; do \ + if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \ + test -z "$$files" || { \ + echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \ + $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \ + } \ + ; done uninstall-binPROGRAMS: @$(NORMAL_UNINSTALL) - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \ - rm -f "$(DESTDIR)$(bindir)/$$f"; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + files=`for p in $$list; do echo "$$p"; done | \ + sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \ + -e 's/$$/$(EXEEXT)/' `; \ + test -n "$$list" || exit 0; \ + echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ + cd "$(DESTDIR)$(bindir)" && rm -f $$files clean-binPROGRAMS: - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(bin_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list clean-checkPROGRAMS: - @list='$(check_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(check_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list getub$(EXEEXT): $(getub_OBJECTS) $(getub_DEPENDENCIES) @rm -f getub$(EXEEXT) $(LINK) $(getub_OBJECTS) $(getub_LDADD) $(LIBS) h5jam$(EXEEXT): $(h5jam_OBJECTS) $(h5jam_DEPENDENCIES) @rm -f h5jam$(EXEEXT) - $(LINK) $(h5jam_OBJECTS) $(h5jam_LDADD) $(LIBS) + $(h5jam_LINK) $(h5jam_OBJECTS) $(h5jam_LDADD) $(LIBS) h5jamgentest$(EXEEXT): $(h5jamgentest_OBJECTS) $(h5jamgentest_DEPENDENCIES) @rm -f h5jamgentest$(EXEEXT) $(LINK) $(h5jamgentest_OBJECTS) $(h5jamgentest_LDADD) $(LIBS) h5unjam$(EXEEXT): $(h5unjam_OBJECTS) $(h5unjam_DEPENDENCIES) @rm -f h5unjam$(EXEEXT) - $(LINK) $(h5unjam_OBJECTS) $(h5unjam_LDADD) $(LIBS) + $(h5unjam_LINK) $(h5unjam_OBJECTS) $(h5unjam_LDADD) $(LIBS) tellub$(EXEEXT): $(tellub_OBJECTS) $(tellub_DEPENDENCIES) @rm -f tellub$(EXEEXT) $(LINK) $(tellub_OBJECTS) $(tellub_LDADD) $(LIBS) @@ -480,21 +515,21 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< @@ -517,7 +552,7 @@ tags: TAGS TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ + set x; \ here=`pwd`; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ @@ -525,29 +560,34 @@ TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \ + shift; \ + if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \ test -n "$$unique" || unique=$$empty_fix; \ - $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ - $$tags $$unique; \ + if test $$# -gt 0; then \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + "$$@" $$unique; \ + else \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + $$unique; \ + fi; \ fi ctags: CTAGS CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - test -z "$(CTAGS_ARGS)$$tags$$unique" \ + test -z "$(CTAGS_ARGS)$$unique" \ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \ - $$tags $$unique + $$unique GTAGS: here=`$(am__cd) $(top_builddir) && pwd` \ - && cd $(top_srcdir) \ - && gtags -i $(GTAGS_ARGS) $$here + && $(am__cd) $(top_srcdir) \ + && gtags -i $(GTAGS_ARGS) "$$here" distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -568,13 +608,17 @@ distdir: $(DISTFILES) if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ if test -d $$d/$$file; then \ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ + if test -d "$(distdir)/$$file"; then \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ + fi; \ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ - cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ fi; \ - cp -pR $$d/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \ else \ - test -f $(distdir)/$$file \ - || cp -p $$d/$$file $(distdir)/$$file \ + test -f "$(distdir)/$$file" \ + || cp -p $$d/$$file "$(distdir)/$$file" \ || exit 1; \ fi; \ done @@ -607,6 +651,7 @@ clean-generic: distclean-generic: -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) + -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES) -test -z "$(DISTCLEANFILES)" || rm -f $(DISTCLEANFILES) maintainer-clean-generic: @@ -629,6 +674,8 @@ dvi-am: html: html-am +html-am: + info: info-am info-am: @@ -637,18 +684,28 @@ install-data-am: install-dvi: install-dvi-am +install-dvi-am: + install-exec-am: install-binPROGRAMS install-html: install-html-am +install-html-am: + install-info: install-info-am +install-info-am: + install-man: install-pdf: install-pdf-am +install-pdf-am: + install-ps: install-ps-am +install-ps-am: + installcheck-am: maintainer-clean: maintainer-clean-am @@ -671,7 +728,7 @@ ps-am: uninstall-am: uninstall-binPROGRAMS -.MAKE: install-am install-strip +.MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ @@ -894,6 +951,7 @@ check-vfd: $(LIB) $(PROGS) $(TESTS) HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ fi; \ done + # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: diff --git a/tools/h5jam/h5jamgentest.c b/tools/h5jam/h5jamgentest.c index 7b7e648..5a3d828 100644 --- a/tools/h5jam/h5jamgentest.c +++ b/tools/h5jam/h5jamgentest.c @@ -132,7 +132,7 @@ static hid_t UD_traverse(const char UNUSED * link_name, hid_t UNUSED cur_group, #define MY_LINKCLASS 187 const H5L_class_t UD_link_class[1] = {{ H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */ - MY_LINKCLASS, /* Link type id number */ + (H5L_type_t)MY_LINKCLASS, /* Link type id number */ "UD link class", /* name for debugging */ NULL, /* Creation callback */ NULL, /* Move/rename callback */ @@ -301,7 +301,7 @@ gent_ub(const char * filename, size_t ub_size, size_t ub_fill) /* user-defined link */ H5Lregister(UD_link_class); - H5Lcreate_ud(fid, "/g2/udlink", MY_LINKCLASS, NULL, (size_t)0, H5P_DEFAULT, H5P_DEFAULT); + H5Lcreate_ud(fid, "/g2/udlink", (H5L_type_t)MY_LINKCLASS, NULL, (size_t)0, H5P_DEFAULT, H5P_DEFAULT); H5Fclose(fid); diff --git a/tools/h5ls/Makefile.am b/tools/h5ls/Makefile.am index 439ef07..64e89f1 100644 --- a/tools/h5ls/Makefile.am +++ b/tools/h5ls/Makefile.am @@ -31,6 +31,9 @@ SCRIPT_DEPEND=h5ls$(EXEEXT) # This is our main target, the h5ls tool bin_PROGRAMS=h5ls +# Add h5ls specific linker flags here +h5ls_LDFLAGS = $(LT_STATIC_EXEC) + # All programs depend on the hdf5 and h5tools libraries LDADD=$(LIBH5TOOLS) $(LIBHDF5) diff --git a/tools/h5ls/Makefile.in b/tools/h5ls/Makefile.in index 72fc0bf..bace577 100644 --- a/tools/h5ls/Makefile.in +++ b/tools/h5ls/Makefile.in @@ -1,8 +1,9 @@ -# Makefile.in generated by automake 1.10.2 from Makefile.am. +# Makefile.in generated by automake 1.11 from Makefile.am. # @configure_input@ # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. +# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, +# Inc. # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,8 +34,9 @@ VPATH = @srcdir@ pkgdatadir = $(datadir)/@PACKAGE@ -pkglibdir = $(libdir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkglibexecdir = $(libexecdir)/@PACKAGE@ am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd install_sh_DATA = $(install_sh) -c -m 644 install_sh_PROGRAM = $(install_sh) -c @@ -62,16 +64,20 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = testh5ls.sh +CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" -binPROGRAMS_INSTALL = $(INSTALL_PROGRAM) PROGRAMS = $(bin_PROGRAMS) h5ls_SOURCES = h5ls.c h5ls_OBJECTS = h5ls.$(OBJEXT) h5ls_LDADD = $(LDADD) h5ls_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +h5ls_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(h5ls_LDFLAGS) \ + $(LDFLAGS) -o $@ DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles +am__mv = mv -f COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ @@ -85,6 +91,8 @@ SOURCES = h5ls.c DIST_SOURCES = h5ls.c ETAGS = etags CTAGS = ctags +am__tty_colors = \ +red=; grn=; lgn=; blu=; std= DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ @@ -199,6 +207,7 @@ PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ PACKAGE_NAME = @PACKAGE_NAME@ PACKAGE_STRING = @PACKAGE_STRING@ PACKAGE_TARNAME = @PACKAGE_TARNAME@ +PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ @@ -290,6 +299,7 @@ sharedstatedir = @sharedstatedir@ srcdir = @srcdir@ sysconfdir = @sysconfdir@ target_alias = @target_alias@ +top_build_prefix = @top_build_prefix@ top_builddir = @top_builddir@ top_srcdir = @top_srcdir@ @@ -343,6 +353,9 @@ TEST_SCRIPT = testh5ls.sh check_SCRIPTS = $(TEST_SCRIPT) SCRIPT_DEPEND = h5ls$(EXEEXT) +# Add h5ls specific linker flags here +h5ls_LDFLAGS = $(LT_STATIC_EXEC) + # All programs depend on the hdf5 and h5tools libraries LDADD = $(LIBH5TOOLS) $(LIBHDF5) @@ -374,9 +387,9 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir exit 1;; \ esac; \ done; \ - echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5ls/Makefile'; \ - cd $(top_srcdir) && \ - $(AUTOMAKE) --foreign tools/h5ls/Makefile + echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5ls/Makefile'; \ + $(am__cd) $(top_srcdir) && \ + $(AUTOMAKE) --foreign tools/h5ls/Makefile .PRECIOUS: Makefile Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status @case '$?' in \ @@ -394,39 +407,55 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +$(am__aclocal_m4_deps): testh5ls.sh: $(top_builddir)/config.status $(srcdir)/testh5ls.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - if test -f $$p \ - || test -f $$p1 \ - ; then \ - f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \ - $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \ - else :; fi; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + for p in $$list; do echo "$$p $$p"; done | \ + sed 's/$(EXEEXT)$$//' | \ + while read p p1; do if test -f $$p || test -f $$p1; \ + then echo "$$p"; echo "$$p"; else :; fi; \ + done | \ + sed -e 'p;s,.*/,,;n;h' -e 's|.*|.|' \ + -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \ + sed 'N;N;N;s,\n, ,g' | \ + $(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \ + { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \ + if ($$2 == $$4) files[d] = files[d] " " $$1; \ + else { print "f", $$3 "/" $$4, $$1; } } \ + END { for (d in files) print "f", d, files[d] }' | \ + while read type dir files; do \ + if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \ + test -z "$$files" || { \ + echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \ + $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \ + } \ + ; done uninstall-binPROGRAMS: @$(NORMAL_UNINSTALL) - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \ - rm -f "$(DESTDIR)$(bindir)/$$f"; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + files=`for p in $$list; do echo "$$p"; done | \ + sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \ + -e 's/$$/$(EXEEXT)/' `; \ + test -n "$$list" || exit 0; \ + echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ + cd "$(DESTDIR)$(bindir)" && rm -f $$files clean-binPROGRAMS: - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(bin_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list h5ls$(EXEEXT): $(h5ls_OBJECTS) $(h5ls_DEPENDENCIES) @rm -f h5ls$(EXEEXT) - $(LINK) $(h5ls_OBJECTS) $(h5ls_LDADD) $(LIBS) + $(h5ls_LINK) $(h5ls_OBJECTS) $(h5ls_LDADD) $(LIBS) mostlyclean-compile: -rm -f *.$(OBJEXT) @@ -438,21 +467,21 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< @@ -475,7 +504,7 @@ tags: TAGS TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ + set x; \ here=`pwd`; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ @@ -483,29 +512,34 @@ TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \ + shift; \ + if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \ test -n "$$unique" || unique=$$empty_fix; \ - $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ - $$tags $$unique; \ + if test $$# -gt 0; then \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + "$$@" $$unique; \ + else \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + $$unique; \ + fi; \ fi ctags: CTAGS CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - test -z "$(CTAGS_ARGS)$$tags$$unique" \ + test -z "$(CTAGS_ARGS)$$unique" \ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \ - $$tags $$unique + $$unique GTAGS: here=`$(am__cd) $(top_builddir) && pwd` \ - && cd $(top_srcdir) \ - && gtags -i $(GTAGS_ARGS) $$here + && $(am__cd) $(top_srcdir) \ + && gtags -i $(GTAGS_ARGS) "$$here" distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -526,13 +560,17 @@ distdir: $(DISTFILES) if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ if test -d $$d/$$file; then \ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ + if test -d "$(distdir)/$$file"; then \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ + fi; \ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ - cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ fi; \ - cp -pR $$d/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \ else \ - test -f $(distdir)/$$file \ - || cp -p $$d/$$file $(distdir)/$$file \ + test -f "$(distdir)/$$file" \ + || cp -p $$d/$$file "$(distdir)/$$file" \ || exit 1; \ fi; \ done @@ -565,6 +603,7 @@ clean-generic: distclean-generic: -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) + -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES) maintainer-clean-generic: @echo "This command is intended for maintainers to use" @@ -585,6 +624,8 @@ dvi-am: html: html-am +html-am: + info: info-am info-am: @@ -593,18 +634,28 @@ install-data-am: install-dvi: install-dvi-am +install-dvi-am: + install-exec-am: install-binPROGRAMS install-html: install-html-am +install-html-am: + install-info: install-info-am +install-info-am: + install-man: install-pdf: install-pdf-am +install-pdf-am: + install-ps: install-ps-am +install-ps-am: + installcheck-am: maintainer-clean: maintainer-clean-am @@ -627,7 +678,7 @@ ps-am: uninstall-am: uninstall-binPROGRAMS -.MAKE: install-am install-strip +.MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-generic clean-libtool ctags \ @@ -850,6 +901,7 @@ check-vfd: $(LIB) $(PROGS) $(TESTS) HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ fi; \ done + # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: diff --git a/tools/h5repack/Makefile.am b/tools/h5repack/Makefile.am index 2c0c0c2..1f811f0 100644 --- a/tools/h5repack/Makefile.am +++ b/tools/h5repack/Makefile.am @@ -36,6 +36,9 @@ SCRIPT_DEPEND=h5repack$(EXEEXT) # Our main target, h5repack tool bin_PROGRAMS=h5repack +# Add h5repack specific linker flags here +h5repack_LDFLAGS = $(LT_STATIC_EXEC) + # Depend on the hdf5 library, the tools library, the test library LDADD=$(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5) diff --git a/tools/h5repack/Makefile.in b/tools/h5repack/Makefile.in index 9b559ad..656cfa6 100644 --- a/tools/h5repack/Makefile.in +++ b/tools/h5repack/Makefile.in @@ -1,8 +1,9 @@ -# Makefile.in generated by automake 1.10.2 from Makefile.am. +# Makefile.in generated by automake 1.11 from Makefile.am. # @configure_input@ # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. +# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, +# Inc. # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,8 +34,9 @@ VPATH = @srcdir@ pkgdatadir = $(datadir)/@PACKAGE@ -pkglibdir = $(libdir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkglibexecdir = $(libexecdir)/@PACKAGE@ am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd install_sh_DATA = $(install_sh) -c -m 644 install_sh_PROGRAM = $(install_sh) -c @@ -64,8 +66,8 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = h5repack.sh +CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" -binPROGRAMS_INSTALL = $(INSTALL_PROGRAM) am__EXEEXT_1 = h5repacktst$(EXEEXT) PROGRAMS = $(bin_PROGRAMS) $(noinst_PROGRAMS) am__objects_1 = h5repack.$(OBJEXT) h5repack_copy.$(OBJEXT) \ @@ -76,6 +78,9 @@ am_h5repack_OBJECTS = $(am__objects_1) h5repack_main.$(OBJEXT) h5repack_OBJECTS = $(am_h5repack_OBJECTS) h5repack_LDADD = $(LDADD) h5repack_DEPENDENCIES = $(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5) +h5repack_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(h5repack_LDFLAGS) \ + $(LDFLAGS) -o $@ am_h5repacktst_OBJECTS = $(am__objects_1) h5repacktst.$(OBJEXT) h5repacktst_OBJECTS = $(am_h5repacktst_OBJECTS) h5repacktst_LDADD = $(LDADD) @@ -90,6 +95,7 @@ testh5repack_detect_szip_DEPENDENCIES = $(LIBH5TOOLS) $(LIBH5TEST) \ DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles +am__mv = mv -f COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ @@ -105,6 +111,8 @@ DIST_SOURCES = $(h5repack_SOURCES) $(h5repacktst_SOURCES) \ $(testh5repack_detect_szip_SOURCES) ETAGS = etags CTAGS = ctags +am__tty_colors = \ +red=; grn=; lgn=; blu=; std= DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ @@ -219,6 +227,7 @@ PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ PACKAGE_NAME = @PACKAGE_NAME@ PACKAGE_STRING = @PACKAGE_STRING@ PACKAGE_TARNAME = @PACKAGE_TARNAME@ +PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ @@ -310,6 +319,7 @@ sharedstatedir = @sharedstatedir@ srcdir = @srcdir@ sysconfdir = @sysconfdir@ target_alias = @target_alias@ +top_build_prefix = @top_build_prefix@ top_builddir = @top_builddir@ top_srcdir = @top_srcdir@ @@ -367,6 +377,9 @@ TEST_PROG = h5repacktst check_SCRIPTS = $(TEST_SCRIPT) SCRIPT_DEPEND = h5repack$(EXEEXT) +# Add h5repack specific linker flags here +h5repack_LDFLAGS = $(LT_STATIC_EXEC) + # Depend on the hdf5 library, the tools library, the test library LDADD = $(LIBH5TOOLS) $(LIBH5TEST) $(LIBHDF5) @@ -408,9 +421,9 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir exit 1;; \ esac; \ done; \ - echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5repack/Makefile'; \ - cd $(top_srcdir) && \ - $(AUTOMAKE) --foreign tools/h5repack/Makefile + echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5repack/Makefile'; \ + $(am__cd) $(top_srcdir) && \ + $(AUTOMAKE) --foreign tools/h5repack/Makefile .PRECIOUS: Makefile Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status @case '$?' in \ @@ -428,53 +441,73 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +$(am__aclocal_m4_deps): h5repack.sh: $(top_builddir)/config.status $(srcdir)/h5repack.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - if test -f $$p \ - || test -f $$p1 \ - ; then \ - f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \ - $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \ - else :; fi; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + for p in $$list; do echo "$$p $$p"; done | \ + sed 's/$(EXEEXT)$$//' | \ + while read p p1; do if test -f $$p || test -f $$p1; \ + then echo "$$p"; echo "$$p"; else :; fi; \ + done | \ + sed -e 'p;s,.*/,,;n;h' -e 's|.*|.|' \ + -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \ + sed 'N;N;N;s,\n, ,g' | \ + $(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \ + { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \ + if ($$2 == $$4) files[d] = files[d] " " $$1; \ + else { print "f", $$3 "/" $$4, $$1; } } \ + END { for (d in files) print "f", d, files[d] }' | \ + while read type dir files; do \ + if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \ + test -z "$$files" || { \ + echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \ + $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \ + } \ + ; done uninstall-binPROGRAMS: @$(NORMAL_UNINSTALL) - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \ - rm -f "$(DESTDIR)$(bindir)/$$f"; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + files=`for p in $$list; do echo "$$p"; done | \ + sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \ + -e 's/$$/$(EXEEXT)/' `; \ + test -n "$$list" || exit 0; \ + echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ + cd "$(DESTDIR)$(bindir)" && rm -f $$files clean-binPROGRAMS: - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(bin_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list clean-checkPROGRAMS: - @list='$(check_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(check_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list clean-noinstPROGRAMS: - @list='$(noinst_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(noinst_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list h5repack$(EXEEXT): $(h5repack_OBJECTS) $(h5repack_DEPENDENCIES) @rm -f h5repack$(EXEEXT) - $(LINK) $(h5repack_OBJECTS) $(h5repack_LDADD) $(LIBS) + $(h5repack_LINK) $(h5repack_OBJECTS) $(h5repack_LDADD) $(LIBS) h5repacktst$(EXEEXT): $(h5repacktst_OBJECTS) $(h5repacktst_DEPENDENCIES) @rm -f h5repacktst$(EXEEXT) $(LINK) $(h5repacktst_OBJECTS) $(h5repacktst_LDADD) $(LIBS) @@ -501,21 +534,21 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< @@ -538,7 +571,7 @@ tags: TAGS TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ + set x; \ here=`pwd`; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ @@ -546,29 +579,34 @@ TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \ + shift; \ + if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \ test -n "$$unique" || unique=$$empty_fix; \ - $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ - $$tags $$unique; \ + if test $$# -gt 0; then \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + "$$@" $$unique; \ + else \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + $$unique; \ + fi; \ fi ctags: CTAGS CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - test -z "$(CTAGS_ARGS)$$tags$$unique" \ + test -z "$(CTAGS_ARGS)$$unique" \ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \ - $$tags $$unique + $$unique GTAGS: here=`$(am__cd) $(top_builddir) && pwd` \ - && cd $(top_srcdir) \ - && gtags -i $(GTAGS_ARGS) $$here + && $(am__cd) $(top_srcdir) \ + && gtags -i $(GTAGS_ARGS) "$$here" distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -589,13 +627,17 @@ distdir: $(DISTFILES) if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ if test -d $$d/$$file; then \ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ + if test -d "$(distdir)/$$file"; then \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ + fi; \ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ - cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ fi; \ - cp -pR $$d/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \ else \ - test -f $(distdir)/$$file \ - || cp -p $$d/$$file $(distdir)/$$file \ + test -f "$(distdir)/$$file" \ + || cp -p $$d/$$file "$(distdir)/$$file" \ || exit 1; \ fi; \ done @@ -628,6 +670,7 @@ clean-generic: distclean-generic: -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) + -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES) -test -z "$(DISTCLEANFILES)" || rm -f $(DISTCLEANFILES) maintainer-clean-generic: @@ -650,6 +693,8 @@ dvi-am: html: html-am +html-am: + info: info-am info-am: @@ -658,18 +703,28 @@ install-data-am: install-dvi: install-dvi-am +install-dvi-am: + install-exec-am: install-binPROGRAMS install-html: install-html-am +install-html-am: + install-info: install-info-am +install-info-am: + install-man: install-pdf: install-pdf-am +install-pdf-am: + install-ps: install-ps-am +install-ps-am: + installcheck-am: maintainer-clean: maintainer-clean-am @@ -692,7 +747,7 @@ ps-am: uninstall-am: uninstall-binPROGRAMS -.MAKE: install-am install-strip +.MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ @@ -919,6 +974,7 @@ check-vfd: $(LIB) $(PROGS) $(TESTS) HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ fi; \ done + # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: diff --git a/tools/h5repack/h5repack_copy.c b/tools/h5repack/h5repack_copy.c index 73f57e3..0fb8fc8 100644 --- a/tools/h5repack/h5repack_copy.c +++ b/tools/h5repack/h5repack_copy.c @@ -930,16 +930,12 @@ int do_copy_objects(hid_t fidin, /* only print the compression ration if there was a filter request */ if (apply_s && apply_f && req_filter) { - hssize_t a, b; - /* get the storage size of the output dataset */ dsize_out=H5Dget_storage_size(dset_out); /* compression ratio = uncompressed size / compressed size */ - - a = dsize_in; b = dsize_out; - if (b!=0) - ratio = (double) a / (double) b; + if (dsize_out!=0) + ratio = (double) dsize_in / (double) dsize_out; print_dataset_info(dcpl_out,travt->objs[i].name,ratio,1); } diff --git a/tools/h5repack/h5repack_filters.c b/tools/h5repack/h5repack_filters.c index 6b08a2f..92b263b 100644 --- a/tools/h5repack/h5repack_filters.c +++ b/tools/h5repack/h5repack_filters.c @@ -419,7 +419,7 @@ int apply_filters(const char* name, /* object name from traverse list */ H5Z_SO_scale_type_t scale_type; int scale_factor; - scale_type = obj.filter[i].cd_values[0]; + scale_type = (H5Z_SO_scale_type_t)obj.filter[i].cd_values[0]; scale_factor = obj.filter[i].cd_values[1]; if(H5Pset_chunk(dcpl_id, obj.chunk.rank, obj.chunk.chunk_lengths)<0) diff --git a/tools/h5repack/h5repack_main.c b/tools/h5repack/h5repack_main.c index f55bd2e..d9ec7ad 100644 --- a/tools/h5repack/h5repack_main.c +++ b/tools/h5repack/h5repack_main.c @@ -411,13 +411,12 @@ void parse_command_line(int argc, const char **argv, pack_opt_t* options) case 'b': - options->ublock_size = atol( opt_arg ); + options->ublock_size = (hsize_t)atol( opt_arg ); break; case 't': - options->threshold = atol( opt_arg ); - + options->threshold = (hsize_t)atol( opt_arg ); break; case 'a': diff --git a/tools/h5repack/h5repacktst.c b/tools/h5repack/h5repacktst.c index b36afde..d28750c 100644 --- a/tools/h5repack/h5repacktst.c +++ b/tools/h5repack/h5repacktst.c @@ -1507,7 +1507,6 @@ int main (void) SKIPPED(); #endif - /*------------------------------------------------------------------------- * test file with userblock *------------------------------------------------------------------------- @@ -1529,8 +1528,6 @@ int main (void) PASSED(); - - /*------------------------------------------------------------------------- * clean temporary test files *------------------------------------------------------------------------- diff --git a/tools/h5stat/Makefile.am b/tools/h5stat/Makefile.am index b1c2024..a14172d 100644 --- a/tools/h5stat/Makefile.am +++ b/tools/h5stat/Makefile.am @@ -35,6 +35,9 @@ SCRIPT_DEPEND=h5stat$(EXEEXT) bin_PROGRAMS=h5stat bin_SCRIPTS= +# Add h5stat specific linker flags here +h5stat_LDFLAGS = $(LT_STATIC_EXEC) + # Tell automake to clean h5redeploy script CLEANFILES= diff --git a/tools/h5stat/Makefile.in b/tools/h5stat/Makefile.in index 48957c9..15b19ed 100644 --- a/tools/h5stat/Makefile.in +++ b/tools/h5stat/Makefile.in @@ -1,8 +1,9 @@ -# Makefile.in generated by automake 1.10.2 from Makefile.am. +# Makefile.in generated by automake 1.11 from Makefile.am. # @configure_input@ # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. +# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, +# Inc. # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -34,8 +35,9 @@ VPATH = @srcdir@ pkgdatadir = $(datadir)/@PACKAGE@ -pkglibdir = $(libdir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkglibexecdir = $(libexecdir)/@PACKAGE@ am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd install_sh_DATA = $(install_sh) -c -m 644 install_sh_PROGRAM = $(install_sh) -c @@ -64,23 +66,47 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = testh5stat.sh +CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" "$(DESTDIR)$(bindir)" -binPROGRAMS_INSTALL = $(INSTALL_PROGRAM) am__EXEEXT_1 = h5stat_gentest$(EXEEXT) PROGRAMS = $(bin_PROGRAMS) h5stat_SOURCES = h5stat.c h5stat_OBJECTS = h5stat.$(OBJEXT) h5stat_LDADD = $(LDADD) h5stat_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +h5stat_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(h5stat_LDFLAGS) \ + $(LDFLAGS) -o $@ h5stat_gentest_SOURCES = h5stat_gentest.c h5stat_gentest_OBJECTS = h5stat_gentest.$(OBJEXT) h5stat_gentest_LDADD = $(LDADD) h5stat_gentest_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -binSCRIPT_INSTALL = $(INSTALL_SCRIPT) +am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; +am__vpath_adj = case $$p in \ + $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \ + *) f=$$p;; \ + esac; +am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`; +am__install_max = 40 +am__nobase_strip_setup = \ + srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'` +am__nobase_strip = \ + for p in $$list; do echo "$$p"; done | sed -e "s|$$srcdirstrip/||" +am__nobase_list = $(am__nobase_strip_setup); \ + for p in $$list; do echo "$$p $$p"; done | \ + sed "s| $$srcdirstrip/| |;"' / .*\//!s/ .*/ ./; s,\( .*\)/[^/]*$$,\1,' | \ + $(AWK) 'BEGIN { files["."] = "" } { files[$$2] = files[$$2] " " $$1; \ + if (++n[$$2] == $(am__install_max)) \ + { print $$2, files[$$2]; n[$$2] = 0; files[$$2] = "" } } \ + END { for (dir in files) print dir, files[dir] }' +am__base_list = \ + sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \ + sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g' SCRIPTS = $(bin_SCRIPTS) DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles +am__mv = mv -f COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ @@ -94,6 +120,8 @@ SOURCES = h5stat.c h5stat_gentest.c DIST_SOURCES = h5stat.c h5stat_gentest.c ETAGS = etags CTAGS = ctags +am__tty_colors = \ +red=; grn=; lgn=; blu=; std= DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ @@ -208,6 +236,7 @@ PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ PACKAGE_NAME = @PACKAGE_NAME@ PACKAGE_STRING = @PACKAGE_STRING@ PACKAGE_TARNAME = @PACKAGE_TARNAME@ +PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ @@ -299,6 +328,7 @@ sharedstatedir = @sharedstatedir@ srcdir = @srcdir@ sysconfdir = @sysconfdir@ target_alias = @target_alias@ +top_build_prefix = @top_build_prefix@ top_builddir = @top_builddir@ top_srcdir = @top_srcdir@ @@ -359,6 +389,9 @@ check_SCRIPTS = $(TEST_SCRIPT) SCRIPT_DEPEND = h5stat$(EXEEXT) bin_SCRIPTS = +# Add h5stat specific linker flags here +h5stat_LDFLAGS = $(LT_STATIC_EXEC) + # Tell automake to clean h5redeploy script CLEANFILES = @@ -396,9 +429,9 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir exit 1;; \ esac; \ done; \ - echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5stat/Makefile'; \ - cd $(top_srcdir) && \ - $(AUTOMAKE) --foreign tools/h5stat/Makefile + echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/h5stat/Makefile'; \ + $(am__cd) $(top_srcdir) && \ + $(AUTOMAKE) --foreign tools/h5stat/Makefile .PRECIOUS: Makefile Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status @case '$?' in \ @@ -416,68 +449,101 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +$(am__aclocal_m4_deps): testh5stat.sh: $(top_builddir)/config.status $(srcdir)/testh5stat.sh.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - if test -f $$p \ - || test -f $$p1 \ - ; then \ - f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \ - $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \ - else :; fi; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + for p in $$list; do echo "$$p $$p"; done | \ + sed 's/$(EXEEXT)$$//' | \ + while read p p1; do if test -f $$p || test -f $$p1; \ + then echo "$$p"; echo "$$p"; else :; fi; \ + done | \ + sed -e 'p;s,.*/,,;n;h' -e 's|.*|.|' \ + -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \ + sed 'N;N;N;s,\n, ,g' | \ + $(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \ + { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \ + if ($$2 == $$4) files[d] = files[d] " " $$1; \ + else { print "f", $$3 "/" $$4, $$1; } } \ + END { for (d in files) print "f", d, files[d] }' | \ + while read type dir files; do \ + if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \ + test -z "$$files" || { \ + echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \ + $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \ + } \ + ; done uninstall-binPROGRAMS: @$(NORMAL_UNINSTALL) - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \ - rm -f "$(DESTDIR)$(bindir)/$$f"; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + files=`for p in $$list; do echo "$$p"; done | \ + sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \ + -e 's/$$/$(EXEEXT)/' `; \ + test -n "$$list" || exit 0; \ + echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ + cd "$(DESTDIR)$(bindir)" && rm -f $$files clean-binPROGRAMS: - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(bin_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list clean-checkPROGRAMS: - @list='$(check_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(check_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list h5stat$(EXEEXT): $(h5stat_OBJECTS) $(h5stat_DEPENDENCIES) @rm -f h5stat$(EXEEXT) - $(LINK) $(h5stat_OBJECTS) $(h5stat_LDADD) $(LIBS) + $(h5stat_LINK) $(h5stat_OBJECTS) $(h5stat_LDADD) $(LIBS) h5stat_gentest$(EXEEXT): $(h5stat_gentest_OBJECTS) $(h5stat_gentest_DEPENDENCIES) @rm -f h5stat_gentest$(EXEEXT) $(LINK) $(h5stat_gentest_OBJECTS) $(h5stat_gentest_LDADD) $(LIBS) install-binSCRIPTS: $(bin_SCRIPTS) @$(NORMAL_INSTALL) test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" - @list='$(bin_SCRIPTS)'; for p in $$list; do \ + @list='$(bin_SCRIPTS)'; test -n "$(bindir)" || list=; \ + for p in $$list; do \ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ - if test -f $$d$$p; then \ - f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \ - echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \ - $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \ - else :; fi; \ - done + if test -f "$$d$$p"; then echo "$$d$$p"; echo "$$p"; else :; fi; \ + done | \ + sed -e 'p;s,.*/,,;n' \ + -e 'h;s|.*|.|' \ + -e 'p;x;s,.*/,,;$(transform)' | sed 'N;N;N;s,\n, ,g' | \ + $(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1; } \ + { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \ + if ($$2 == $$4) { files[d] = files[d] " " $$1; \ + if (++n[d] == $(am__install_max)) { \ + print "f", d, files[d]; n[d] = 0; files[d] = "" } } \ + else { print "f", d "/" $$4, $$1 } } \ + END { for (d in files) print "f", d, files[d] }' | \ + while read type dir files; do \ + if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \ + test -z "$$files" || { \ + echo " $(INSTALL_SCRIPT) $$files '$(DESTDIR)$(bindir)$$dir'"; \ + $(INSTALL_SCRIPT) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \ + } \ + ; done uninstall-binSCRIPTS: @$(NORMAL_UNINSTALL) - @list='$(bin_SCRIPTS)'; for p in $$list; do \ - f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \ - echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \ - rm -f "$(DESTDIR)$(bindir)/$$f"; \ - done + @list='$(bin_SCRIPTS)'; test -n "$(bindir)" || exit 0; \ + files=`for p in $$list; do echo "$$p"; done | \ + sed -e 's,.*/,,;$(transform)'`; \ + test -n "$$list" || exit 0; \ + echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ + cd "$(DESTDIR)$(bindir)" && rm -f $$files mostlyclean-compile: -rm -f *.$(OBJEXT) @@ -490,21 +556,21 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< @@ -527,7 +593,7 @@ tags: TAGS TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ + set x; \ here=`pwd`; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ @@ -535,29 +601,34 @@ TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \ + shift; \ + if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \ test -n "$$unique" || unique=$$empty_fix; \ - $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ - $$tags $$unique; \ + if test $$# -gt 0; then \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + "$$@" $$unique; \ + else \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + $$unique; \ + fi; \ fi ctags: CTAGS CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - test -z "$(CTAGS_ARGS)$$tags$$unique" \ + test -z "$(CTAGS_ARGS)$$unique" \ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \ - $$tags $$unique + $$unique GTAGS: here=`$(am__cd) $(top_builddir) && pwd` \ - && cd $(top_srcdir) \ - && gtags -i $(GTAGS_ARGS) $$here + && $(am__cd) $(top_srcdir) \ + && gtags -i $(GTAGS_ARGS) "$$here" distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -578,13 +649,17 @@ distdir: $(DISTFILES) if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ if test -d $$d/$$file; then \ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ + if test -d "$(distdir)/$$file"; then \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ + fi; \ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ - cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ fi; \ - cp -pR $$d/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \ else \ - test -f $(distdir)/$$file \ - || cp -p $$d/$$file $(distdir)/$$file \ + test -f "$(distdir)/$$file" \ + || cp -p $$d/$$file "$(distdir)/$$file" \ || exit 1; \ fi; \ done @@ -618,6 +693,7 @@ clean-generic: distclean-generic: -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) + -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES) -test -z "$(DISTCLEANFILES)" || rm -f $(DISTCLEANFILES) maintainer-clean-generic: @@ -640,6 +716,8 @@ dvi-am: html: html-am +html-am: + info: info-am info-am: @@ -648,18 +726,28 @@ install-data-am: install-dvi: install-dvi-am +install-dvi-am: + install-exec-am: install-binPROGRAMS install-binSCRIPTS install-html: install-html-am +install-html-am: + install-info: install-info-am +install-info-am: + install-man: install-pdf: install-pdf-am +install-pdf-am: + install-ps: install-ps-am +install-ps-am: + installcheck-am: maintainer-clean: maintainer-clean-am @@ -682,7 +770,7 @@ ps-am: uninstall-am: uninstall-binPROGRAMS uninstall-binSCRIPTS -.MAKE: install-am install-strip +.MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ @@ -906,6 +994,7 @@ check-vfd: $(LIB) $(PROGS) $(TESTS) HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ fi; \ done + # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: diff --git a/tools/h5stat/h5stat.c b/tools/h5stat/h5stat.c index 315c558..78fb4f5 100644 --- a/tools/h5stat/h5stat.c +++ b/tools/h5stat/h5stat.c @@ -51,7 +51,7 @@ typedef struct iter_t { unsigned long uniq_groups; /* Number of unique groups */ unsigned long uniq_dsets; /* Number of unique datasets */ - unsigned long uniq_types; /* Number of unique named datatypes */ + unsigned long uniq_dtypes; /* Number of unique named datatypes */ unsigned long uniq_links; /* Number of unique links */ unsigned long uniq_others; /* Number of other unique objects */ @@ -64,11 +64,11 @@ typedef struct iter_t { hsize_t max_attrs; /* Maximum attributes from a group */ unsigned long num_small_attrs[SIZE_SMALL_ATTRS]; /* Size of small attributes tracked */ - unsigned attr_nbins; - unsigned long *attr_bins; + unsigned attr_nbins; /* Number of bins for attribute counts */ + unsigned long *attr_bins; /* Pointer to array of bins for attribute counts */ - unsigned long max_dset_rank; /* Maximum rank of dataset */ - unsigned long dset_rank_count[H5S_MAX_RANK]; /* Number of datasets of each rank */ + unsigned max_dset_rank; /* Maximum rank of dataset */ + unsigned long dset_rank_count[H5S_MAX_RANK]; /* Number of datasets of each rank */ hsize_t max_dset_dims; /* Maximum dimension size of dataset */ unsigned long small_dset_dims[SIZE_SMALL_DSETS]; /* Size of dimensions of small datasets tracked */ unsigned long dset_layouts[H5D_NLAYOUTS]; /* Type of storage for each dataset */ @@ -79,14 +79,15 @@ typedef struct iter_t { unsigned long *dset_dim_bins; /* Pointer to array of bins for dataset dimensions */ ohdr_info_t dset_ohdr_info; /* Object header information for datasets */ hsize_t dset_storage_size; /* Size of raw data for datasets */ - hsize_t groups_btree_storage_size; /* btree size for group */ - hsize_t groups_heap_storage_size; /* heap size for group */ - hsize_t attrs_btree_storage_size; /* btree size for attributes (1.8) */ - hsize_t attrs_heap_storage_size; /* fractal heap size for attributes (1.8) */ - hsize_t SM_hdr_storage_size; /* header size for SOHM table (1.8) */ - hsize_t SM_index_storage_size; /* index (btree & list) size for SOHM table (1.8) */ - hsize_t SM_heap_storage_size; /* fractal heap size for SOHM table (1.8) */ - hsize_t super_ext_size; /* superblock extension size */ + ohdr_info_t dtype_ohdr_info; /* Object header information for datatypes */ + hsize_t groups_btree_storage_size; /* btree size for group */ + hsize_t groups_heap_storage_size; /* heap size for group */ + hsize_t attrs_btree_storage_size; /* btree size for attributes (1.8) */ + hsize_t attrs_heap_storage_size; /* fractal heap size for attributes (1.8) */ + hsize_t SM_hdr_storage_size; /* header size for SOHM table (1.8) */ + hsize_t SM_index_storage_size; /* index (btree & list) size for SOHM table (1.8) */ + hsize_t SM_heap_storage_size; /* fractal heap size for SOHM table (1.8) */ + hsize_t super_ext_size; /* superblock extension size */ hsize_t datasets_btree_storage_size; /* btree size for chunked dataset */ unsigned long nexternal; /* Number of external files for a dataset */ int local; /* Flag to indicate iteration over the object*/ @@ -110,7 +111,7 @@ struct handler_t { }; -static const char *s_opts ="AFfhGgDdTO:V"; +static const char *s_opts ="ADdFfhGgTO:V"; static struct long_options l_opts[] = { {"help", no_arg, 'h'}, {"hel", no_arg, 'h'}, @@ -192,13 +193,6 @@ leave(int ret) static void usage(const char *prog) { fflush(stdout); - fprintf(stdout, "\n"); - fprintf(stdout, "This tool is under development. For detailed information\n"); - fprintf(stdout, "please see the specification document at\n"); - fprintf(stdout, "http://hdf.ncsa.uiuc.edu/RFC/h5stat/h5stat-spec.pdf\n"); - fprintf(stdout, "\n"); - fprintf(stdout, "Please send your comments and questions to help@hdfgroup.org\n"); - fprintf(stdout, "\n"); fprintf(stdout, "Usage: %s [OPTIONS] file\n", prog); fprintf(stdout, "\n"); fprintf(stdout, " OPTIONS\n"); @@ -277,7 +271,7 @@ attribute_stats(iter_t *iter, const H5O_info_t *oi) /* Add attribute count to proper bin */ bin = ceil_log10((unsigned long)oi->num_attrs); if((bin + 1) > iter->attr_nbins) { - iter->attr_bins = realloc(iter->attr_bins, (bin + 1) * sizeof(unsigned long)); + iter->attr_bins = (unsigned long *)realloc(iter->attr_bins, (bin + 1) * sizeof(unsigned long)); assert(iter->attr_bins); /* Initialize counts for intermediate bins */ @@ -349,7 +343,7 @@ group_stats(iter_t *iter, const char *name, const H5O_info_t *oi) bin = ceil_log10((unsigned long)ginfo.nlinks); if((bin + 1) > iter->group_nbins) { /* Allocate more storage for info about dataset's datatype */ - iter->group_bins = realloc(iter->group_bins, (bin + 1) * sizeof(unsigned long)); + iter->group_bins = (unsigned long *)realloc(iter->group_bins, (bin + 1) * sizeof(unsigned long)); assert(iter->group_bins); /* Initialize counts for intermediate bins */ @@ -451,7 +445,7 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) /* Check for larger rank of dataset */ if((unsigned)ndims > iter->max_dset_rank) - iter->max_dset_rank = ndims; + iter->max_dset_rank = (unsigned)ndims; /* Track the number of datasets with each rank */ (iter->dset_rank_count[ndims])++; @@ -466,7 +460,7 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) bin = ceil_log10((unsigned long)dims[0]); if((bin + 1) > iter->dset_dim_nbins) { /* Allocate more storage for info about dataset's datatype */ - iter->dset_dim_bins = realloc(iter->dset_dim_bins, (bin + 1) * sizeof(unsigned long)); + iter->dset_dim_bins = (unsigned long *)realloc(iter->dset_dim_bins, (bin + 1) * sizeof(unsigned long)); assert(iter->dset_dim_bins); /* Initialize counts for intermediate bins */ @@ -503,7 +497,7 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) iter->dset_ntypes++; /* Allocate more storage for info about dataset's datatype */ - iter->dset_type_info = realloc(iter->dset_type_info, iter->dset_ntypes * sizeof(dtype_info_t)); + iter->dset_type_info = (dtype_info_t *)realloc(iter->dset_type_info, iter->dset_ntypes * sizeof(dtype_info_t)); assert(iter->dset_type_info); /* Initialize information about datatype */ @@ -537,7 +531,7 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) assert (num_ext >= 0); if(num_ext) - iter->nexternal = iter->nexternal + num_ext; + iter->nexternal += (unsigned long)num_ext; /* Track different filters */ if((nfltr = H5Pget_nfilters(dcpl)) >= 0) { @@ -561,6 +555,31 @@ dataset_stats(iter_t *iter, const char *name, const H5O_info_t *oi) return 0; } /* end dataset_stats() */ +/*------------------------------------------------------------------------- + * Function: datatype_stats + * + * Purpose: Gather statistics about the datatype + * + * Return: Success: 0 + * Failure: -1 + * + * Programmer: Vailin Choi; July 7th, 2009 + * + *------------------------------------------------------------------------- + */ +static herr_t +datatype_stats(iter_t *iter, const H5O_info_t *oi) +{ + /* Gather statistics about this type of object */ + iter->uniq_dtypes++; + + /* Get object header information */ + iter->dtype_ohdr_info.total_size += oi->hdr.space.total; + iter->dtype_ohdr_info.free_size += oi->hdr.space.free; + + return 0; +} /* end datatype_stats() */ + /*------------------------------------------------------------------------- * Function: obj_stats @@ -598,8 +617,7 @@ obj_stats(const char *path, const H5O_info_t *oi, const char *already_visited, break; case H5O_TYPE_NAMED_DATATYPE: - /* Gather statistics about this type of object */ - iter->uniq_types++; + datatype_stats(iter, oi); break; default: @@ -661,10 +679,6 @@ lnk_stats(const char UNUSED *path, const H5L_info_t *li, void *_iter) * Programmer: Elena Pourmal * Saturday, August 12, 2006 * - * Modifications: - * Vailin Choi 12 July 2007 - * Added 'A' option to display attribute info - * *------------------------------------------------------------------------- */ static struct handler_t * @@ -674,7 +688,7 @@ parse_command_line(int argc, const char *argv[]) struct handler_t *hand; /* Allocate space to hold the command line info */ - hand = calloc((size_t)argc, sizeof(struct handler_t)); + hand = (struct handler_t *)calloc((size_t)argc, sizeof(struct handler_t)); /* parse command line options */ while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) { @@ -801,7 +815,7 @@ print_file_info(const iter_t *iter) printf("File information\n"); printf("\t# of unique groups: %lu\n", iter->uniq_groups); printf("\t# of unique datasets: %lu\n", iter->uniq_dsets); - printf("\t# of unique named dataypes: %lu\n", iter->uniq_types); + printf("\t# of unique named dataypes: %lu\n", iter->uniq_dtypes); printf("\t# of unique links: %lu\n", iter->uniq_links); printf("\t# of unique other: %lu\n", iter->uniq_others); printf("\tMax. # of links to object: %lu\n", iter->max_links); @@ -823,14 +837,6 @@ print_file_info(const iter_t *iter) * Programmer: Elena Pourmal * Saturday, August 12, 2006 * - * Modifications: - * Vailin Choi 12 July 2007 - * Print storage info for: - * 1. btree/heap storage for groups and attributes - * 2. btree storage for chunked dataset - * 3. hdr/btree/list/heap storage for SOHM table - * 4. superblock extension size - * *------------------------------------------------------------------------- */ static herr_t @@ -841,6 +847,8 @@ print_file_metadata(const iter_t *iter) iter->group_ohdr_info.free_size); HDfprintf(stdout, "\tDatasets: %Hu/%Hu\n", iter->dset_ohdr_info.total_size, iter->dset_ohdr_info.free_size); + HDfprintf(stdout, "\tDatatypes: %Hu/%Hu\n", iter->dtype_ohdr_info.total_size, + iter->dtype_ohdr_info.free_size); printf("Storage information:\n"); HDfprintf(stdout, "\tGroups:\n"); @@ -999,7 +1007,7 @@ print_dataset_info(const iter_t *iter) if(iter->uniq_dsets > 0) { printf("Dataset dimension information:\n"); - printf("\tMax. rank of datasets: %lu\n", iter->max_dset_rank); + printf("\tMax. rank of datasets: %u\n", iter->max_dset_rank); printf("\tDataset ranks:\n"); for(u = 0; u < H5S_MAX_RANK; u++) if(iter->dset_rank_count[u] > 0) @@ -1091,8 +1099,6 @@ print_dataset_info(const iter_t *iter) * Programmer: Elena Pourmal * Saturday, August 12, 2006 * - * Modifications: - * *------------------------------------------------------------------------- */ static void @@ -1163,15 +1169,6 @@ print_statistics(const char *name, const iter_t *iter) print_file_statistics(iter); } -/*------------------------------------------------------------------------- - * - * Modifications: - * bug #1253; Oct 6th 2008; Vailin Choi - * Call print_statistics() when objects/links are successfully traversed. - * Otherwise, return warning message. - * - *------------------------------------------------------------------------- - */ int main(int argc, const char *argv[]) diff --git a/tools/h5stat/testfiles/h5stat_filters-F.ddl b/tools/h5stat/testfiles/h5stat_filters-F.ddl index 544d0c7..6bc6cc2 100644 --- a/tools/h5stat/testfiles/h5stat_filters-F.ddl +++ b/tools/h5stat/testfiles/h5stat_filters-F.ddl @@ -5,6 +5,7 @@ Filename: h5stat_filters.h5 Object header size: (total/unused) Groups: 48/8 Datasets: 4936/1344 + Datatypes: 80/0 Storage information: Groups: B-tree/List: 1200 diff --git a/tools/h5stat/testfiles/h5stat_filters.ddl b/tools/h5stat/testfiles/h5stat_filters.ddl index 8afdf82..8243a23 100644 --- a/tools/h5stat/testfiles/h5stat_filters.ddl +++ b/tools/h5stat/testfiles/h5stat_filters.ddl @@ -13,6 +13,7 @@ File information Object header size: (total/unused) Groups: 48/8 Datasets: 4936/1344 + Datatypes: 80/0 Storage information: Groups: B-tree/List: 1200 diff --git a/tools/h5stat/testfiles/h5stat_help1.ddl b/tools/h5stat/testfiles/h5stat_help1.ddl index 0841572..0a86b4c 100644 --- a/tools/h5stat/testfiles/h5stat_help1.ddl +++ b/tools/h5stat/testfiles/h5stat_help1.ddl @@ -1,13 +1,6 @@ ############################# Expected output for 'h5stat -h' ############################# - -This tool is under development. For detailed information -please see the specification document at -http://hdf.ncsa.uiuc.edu/RFC/h5stat/h5stat-spec.pdf - -Please send your comments and questions to help@hdfgroup.org - Usage: h5stat [OPTIONS] file OPTIONS diff --git a/tools/h5stat/testfiles/h5stat_help2.ddl b/tools/h5stat/testfiles/h5stat_help2.ddl index 1e6295b..e41eb9e 100644 --- a/tools/h5stat/testfiles/h5stat_help2.ddl +++ b/tools/h5stat/testfiles/h5stat_help2.ddl @@ -1,13 +1,6 @@ ############################# Expected output for 'h5stat --help' ############################# - -This tool is under development. For detailed information -please see the specification document at -http://hdf.ncsa.uiuc.edu/RFC/h5stat/h5stat-spec.pdf - -Please send your comments and questions to help@hdfgroup.org - Usage: h5stat [OPTIONS] file OPTIONS diff --git a/tools/h5stat/testfiles/h5stat_newgrat.ddl b/tools/h5stat/testfiles/h5stat_newgrat.ddl index 5ba2e7f..f87f297 100644 --- a/tools/h5stat/testfiles/h5stat_newgrat.ddl +++ b/tools/h5stat/testfiles/h5stat_newgrat.ddl @@ -13,6 +13,7 @@ File information Object header size: (total/unused) Groups: 5145147/3220092 Datasets: 414/312 + Datatypes: 0/0 Storage information: Groups: B-tree/List: 470054 diff --git a/tools/h5stat/testfiles/h5stat_tsohm.ddl b/tools/h5stat/testfiles/h5stat_tsohm.ddl index 56524e1..577dfdd 100644 --- a/tools/h5stat/testfiles/h5stat_tsohm.ddl +++ b/tools/h5stat/testfiles/h5stat_tsohm.ddl @@ -13,6 +13,7 @@ File information Object header size: (total/unused) Groups: 51/2 Datasets: 852/447 + Datatypes: 0/0 Storage information: Groups: B-tree/List: 872 diff --git a/tools/lib/Makefile.in b/tools/lib/Makefile.in index 669917c..0236c82 100644 --- a/tools/lib/Makefile.in +++ b/tools/lib/Makefile.in @@ -1,8 +1,9 @@ -# Makefile.in generated by automake 1.10.2 from Makefile.am. +# Makefile.in generated by automake 1.11 from Makefile.am. # @configure_input@ # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. +# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, +# Inc. # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -33,8 +34,9 @@ VPATH = @srcdir@ pkgdatadir = $(datadir)/@PACKAGE@ -pkglibdir = $(libdir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkglibexecdir = $(libexecdir)/@PACKAGE@ am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd install_sh_DATA = $(install_sh) -c -m 644 install_sh_PROGRAM = $(install_sh) -c @@ -62,6 +64,7 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = +CONFIG_CLEAN_VPATH_FILES = LTLIBRARIES = $(noinst_LTLIBRARIES) libh5tools_la_LIBADD = am_libh5tools_la_OBJECTS = h5tools.lo h5tools_str.lo h5tools_utils.lo \ @@ -77,6 +80,7 @@ talign_DEPENDENCIES = libh5tools.la $(LIBHDF5) DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles +am__mv = mv -f COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ @@ -90,6 +94,8 @@ SOURCES = $(libh5tools_la_SOURCES) talign.c DIST_SOURCES = $(libh5tools_la_SOURCES) talign.c ETAGS = etags CTAGS = ctags +am__tty_colors = \ +red=; grn=; lgn=; blu=; std= DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ @@ -204,6 +210,7 @@ PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ PACKAGE_NAME = @PACKAGE_NAME@ PACKAGE_STRING = @PACKAGE_STRING@ PACKAGE_TARNAME = @PACKAGE_TARNAME@ +PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ @@ -295,6 +302,7 @@ sharedstatedir = @sharedstatedir@ srcdir = @srcdir@ sysconfdir = @sysconfdir@ target_alias = @target_alias@ +top_build_prefix = @top_build_prefix@ top_builddir = @top_builddir@ top_srcdir = @top_srcdir@ @@ -385,9 +393,9 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir exit 1;; \ esac; \ done; \ - echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/lib/Makefile'; \ - cd $(top_srcdir) && \ - $(AUTOMAKE) --foreign tools/lib/Makefile + echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/lib/Makefile'; \ + $(am__cd) $(top_srcdir) && \ + $(AUTOMAKE) --foreign tools/lib/Makefile .PRECIOUS: Makefile Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status @case '$?' in \ @@ -405,6 +413,7 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +$(am__aclocal_m4_deps): clean-noinstLTLIBRARIES: -test -z "$(noinst_LTLIBRARIES)" || rm -f $(noinst_LTLIBRARIES) @@ -418,11 +427,13 @@ libh5tools.la: $(libh5tools_la_OBJECTS) $(libh5tools_la_DEPENDENCIES) $(LINK) $(libh5tools_la_OBJECTS) $(libh5tools_la_LIBADD) $(LIBS) clean-checkPROGRAMS: - @list='$(check_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(check_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list talign$(EXEEXT): $(talign_OBJECTS) $(talign_DEPENDENCIES) @rm -f talign$(EXEEXT) $(LINK) $(talign_OBJECTS) $(talign_LDADD) $(LIBS) @@ -449,21 +460,21 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< @@ -486,7 +497,7 @@ tags: TAGS TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ + set x; \ here=`pwd`; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ @@ -494,29 +505,34 @@ TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \ + shift; \ + if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \ test -n "$$unique" || unique=$$empty_fix; \ - $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ - $$tags $$unique; \ + if test $$# -gt 0; then \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + "$$@" $$unique; \ + else \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + $$unique; \ + fi; \ fi ctags: CTAGS CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - test -z "$(CTAGS_ARGS)$$tags$$unique" \ + test -z "$(CTAGS_ARGS)$$unique" \ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \ - $$tags $$unique + $$unique GTAGS: here=`$(am__cd) $(top_builddir) && pwd` \ - && cd $(top_srcdir) \ - && gtags -i $(GTAGS_ARGS) $$here + && $(am__cd) $(top_srcdir) \ + && gtags -i $(GTAGS_ARGS) "$$here" distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -537,13 +553,17 @@ distdir: $(DISTFILES) if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ if test -d $$d/$$file; then \ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ + if test -d "$(distdir)/$$file"; then \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ + fi; \ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ - cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ fi; \ - cp -pR $$d/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \ else \ - test -f $(distdir)/$$file \ - || cp -p $$d/$$file $(distdir)/$$file \ + test -f "$(distdir)/$$file" \ + || cp -p $$d/$$file "$(distdir)/$$file" \ || exit 1; \ fi; \ done @@ -573,6 +593,7 @@ clean-generic: distclean-generic: -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) + -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES) maintainer-clean-generic: @echo "This command is intended for maintainers to use" @@ -594,6 +615,8 @@ dvi-am: html: html-am +html-am: + info: info-am info-am: @@ -602,18 +625,28 @@ install-data-am: install-dvi: install-dvi-am +install-dvi-am: + install-exec-am: install-html: install-html-am +install-html-am: + install-info: install-info-am +install-info-am: + install-man: install-pdf: install-pdf-am +install-pdf-am: + install-ps: install-ps-am +install-ps-am: + installcheck-am: maintainer-clean: maintainer-clean-am @@ -636,7 +669,7 @@ ps-am: uninstall-am: -.MAKE: install-am install-strip +.MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-checkPROGRAMS clean-generic clean-libtool \ @@ -858,6 +891,7 @@ check-vfd: $(LIB) $(PROGS) $(TESTS) HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ fi; \ done + # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: diff --git a/tools/lib/h5diff_array.c b/tools/lib/h5diff_array.c index 5d026ea..735ea70 100644 --- a/tools/lib/h5diff_array.c +++ b/tools/lib/h5diff_array.c @@ -3055,15 +3055,11 @@ hsize_t diff_float(unsigned char *mem1, */ else { - - - for ( i = 0; i < nelmts; i++) { memcpy(&temp1_float, mem1, sizeof(float)); memcpy(&temp2_float, mem2, sizeof(float)); - if (equal_float(temp1_float,temp2_float,options)==FALSE) { if ( print_data(options) ) @@ -5547,6 +5543,9 @@ hbool_t equal_double(double value, double expected, diff_opt_t *options) if (is_zero) return(equal_double(expected,value,options)); + if (value == expected) + return TRUE; + if ( ABS( (value-expected) / expected) < H5DIFF_DBL_EPSILON) return TRUE; else @@ -5608,6 +5607,9 @@ hbool_t equal_ldouble(long double value, long double expected, diff_opt_t *optio if (is_zero) return(equal_ldouble(expected,value,options)); + if (value == expected) + return TRUE; + if ( ABS( (value-expected) / expected) < H5DIFF_DBL_EPSILON) return TRUE; else @@ -5672,6 +5674,9 @@ hbool_t equal_float(float value, float expected, diff_opt_t *options) if (is_zero) return(equal_float(expected,value,options)); + if (value == expected) + return TRUE; + if ( ABS( (value-expected) / expected) < H5DIFF_FLT_EPSILON) return TRUE; else @@ -6024,4 +6029,4 @@ static void h5diff_print_char(char ch) break; } -}
\ No newline at end of file +} diff --git a/tools/misc/Makefile.am b/tools/misc/Makefile.am index bf180f8..7f78465 100644 --- a/tools/misc/Makefile.am +++ b/tools/misc/Makefile.am @@ -35,6 +35,11 @@ SCRIPT_DEPEND=h5repart$(EXEEXT) h5mkgrp$(EXEEXT) bin_PROGRAMS=h5debug h5repart h5mkgrp bin_SCRIPTS=h5redeploy +# Add h5debug, h5repart, and h5mkgrp specific linker flags here +h5debug_LDFLAGS = $(LT_STATIC_EXEC) +h5repart_LDFLAGS = $(LT_STATIC_EXEC) +h5mkgrp_LDFLAGS = $(LT_STATIC_EXEC) + # Tell automake to clean h5redeploy script CLEANFILES=h5redeploy diff --git a/tools/misc/Makefile.in b/tools/misc/Makefile.in index 4e95b43..dd8fce6 100644 --- a/tools/misc/Makefile.in +++ b/tools/misc/Makefile.in @@ -1,8 +1,9 @@ -# Makefile.in generated by automake 1.10.2 from Makefile.am. +# Makefile.in generated by automake 1.11 from Makefile.am. # @configure_input@ # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, -# 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. +# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, +# Inc. # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. @@ -34,8 +35,9 @@ VPATH = @srcdir@ pkgdatadir = $(datadir)/@PACKAGE@ -pkglibdir = $(libdir)/@PACKAGE@ pkgincludedir = $(includedir)/@PACKAGE@ +pkglibdir = $(libdir)/@PACKAGE@ +pkglibexecdir = $(libexecdir)/@PACKAGE@ am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd install_sh_DATA = $(install_sh) -c -m 644 install_sh_PROGRAM = $(install_sh) -c @@ -65,22 +67,31 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ mkinstalldirs = $(SHELL) $(top_srcdir)/bin/mkinstalldirs CONFIG_HEADER = $(top_builddir)/src/H5config.h CONFIG_CLEAN_FILES = h5cc testh5repart.sh +CONFIG_CLEAN_VPATH_FILES = am__installdirs = "$(DESTDIR)$(bindir)" "$(DESTDIR)$(bindir)" -binPROGRAMS_INSTALL = $(INSTALL_PROGRAM) am__EXEEXT_1 = h5repart_gentest$(EXEEXT) PROGRAMS = $(bin_PROGRAMS) h5debug_SOURCES = h5debug.c h5debug_OBJECTS = h5debug.$(OBJEXT) h5debug_LDADD = $(LDADD) h5debug_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +h5debug_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(h5debug_LDFLAGS) \ + $(LDFLAGS) -o $@ h5mkgrp_SOURCES = h5mkgrp.c h5mkgrp_OBJECTS = h5mkgrp.$(OBJEXT) h5mkgrp_LDADD = $(LDADD) h5mkgrp_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +h5mkgrp_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(h5mkgrp_LDFLAGS) \ + $(LDFLAGS) -o $@ h5repart_SOURCES = h5repart.c h5repart_OBJECTS = h5repart.$(OBJEXT) h5repart_LDADD = $(LDADD) h5repart_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) +h5repart_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ + --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(h5repart_LDFLAGS) \ + $(LDFLAGS) -o $@ h5repart_gentest_SOURCES = h5repart_gentest.c h5repart_gentest_OBJECTS = h5repart_gentest.$(OBJEXT) h5repart_gentest_LDADD = $(LDADD) @@ -89,11 +100,32 @@ repart_test_SOURCES = repart_test.c repart_test_OBJECTS = repart_test.$(OBJEXT) repart_test_LDADD = $(LDADD) repart_test_DEPENDENCIES = $(LIBH5TOOLS) $(LIBHDF5) -binSCRIPT_INSTALL = $(INSTALL_SCRIPT) +am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; +am__vpath_adj = case $$p in \ + $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \ + *) f=$$p;; \ + esac; +am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`; +am__install_max = 40 +am__nobase_strip_setup = \ + srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'` +am__nobase_strip = \ + for p in $$list; do echo "$$p"; done | sed -e "s|$$srcdirstrip/||" +am__nobase_list = $(am__nobase_strip_setup); \ + for p in $$list; do echo "$$p $$p"; done | \ + sed "s| $$srcdirstrip/| |;"' / .*\//!s/ .*/ ./; s,\( .*\)/[^/]*$$,\1,' | \ + $(AWK) 'BEGIN { files["."] = "" } { files[$$2] = files[$$2] " " $$1; \ + if (++n[$$2] == $(am__install_max)) \ + { print $$2, files[$$2]; n[$$2] = 0; files[$$2] = "" } } \ + END { for (dir in files) print dir, files[dir] }' +am__base_list = \ + sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \ + sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g' SCRIPTS = $(bin_SCRIPTS) DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src depcomp = $(SHELL) $(top_srcdir)/bin/depcomp am__depfiles_maybe = depfiles +am__mv = mv -f COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \ @@ -109,6 +141,8 @@ DIST_SOURCES = h5debug.c h5mkgrp.c h5repart.c h5repart_gentest.c \ repart_test.c ETAGS = etags CTAGS = ctags +am__tty_colors = \ +red=; grn=; lgn=; blu=; std= DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) ACLOCAL = /home1/packages/automake/automake-1.9.6/bin/aclocal-1.9 -I /afs/ncsa/projects/hdf/packages/libtool_1.5.14/Linux_2.4/share/aclocal ADD_PARALLEL_FILES = @ADD_PARALLEL_FILES@ @@ -223,6 +257,7 @@ PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@ PACKAGE_NAME = @PACKAGE_NAME@ PACKAGE_STRING = @PACKAGE_STRING@ PACKAGE_TARNAME = @PACKAGE_TARNAME@ +PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PARALLEL = @PARALLEL@ PATH_SEPARATOR = @PATH_SEPARATOR@ @@ -314,6 +349,7 @@ sharedstatedir = @sharedstatedir@ srcdir = @srcdir@ sysconfdir = @sysconfdir@ target_alias = @target_alias@ +top_build_prefix = @top_build_prefix@ top_builddir = @top_builddir@ top_srcdir = @top_srcdir@ @@ -374,6 +410,11 @@ check_SCRIPTS = $(TEST_SCRIPT) SCRIPT_DEPEND = h5repart$(EXEEXT) h5mkgrp$(EXEEXT) bin_SCRIPTS = h5redeploy +# Add h5debug, h5repart, and h5mkgrp specific linker flags here +h5debug_LDFLAGS = $(LT_STATIC_EXEC) +h5repart_LDFLAGS = $(LT_STATIC_EXEC) +h5mkgrp_LDFLAGS = $(LT_STATIC_EXEC) + # Tell automake to clean h5redeploy script CLEANFILES = h5redeploy @@ -416,9 +457,9 @@ $(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ $(srcdir)/Makefile.am $(top_srcdir exit 1;; \ esac; \ done; \ - echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/misc/Makefile'; \ - cd $(top_srcdir) && \ - $(AUTOMAKE) --foreign tools/misc/Makefile + echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign tools/misc/Makefile'; \ + $(am__cd) $(top_srcdir) && \ + $(AUTOMAKE) --foreign tools/misc/Makefile .PRECIOUS: Makefile Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status @case '$?' in \ @@ -436,6 +477,7 @@ $(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(ACLOCAL_M4): @MAINTAINER_MODE_TRUE@ $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh +$(am__aclocal_m4_deps): h5cc: $(top_builddir)/config.status $(srcdir)/h5cc.in cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ testh5repart.sh: $(top_builddir)/config.status $(srcdir)/testh5repart.sh.in @@ -443,47 +485,64 @@ testh5repart.sh: $(top_builddir)/config.status $(srcdir)/testh5repart.sh.in install-binPROGRAMS: $(bin_PROGRAMS) @$(NORMAL_INSTALL) test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - p1=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - if test -f $$p \ - || test -f $$p1 \ - ; then \ - f=`echo "$$p1" | sed 's,^.*/,,;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) '$$p' '$(DESTDIR)$(bindir)/$$f'"; \ - $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(binPROGRAMS_INSTALL) "$$p" "$(DESTDIR)$(bindir)/$$f" || exit 1; \ - else :; fi; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + for p in $$list; do echo "$$p $$p"; done | \ + sed 's/$(EXEEXT)$$//' | \ + while read p p1; do if test -f $$p || test -f $$p1; \ + then echo "$$p"; echo "$$p"; else :; fi; \ + done | \ + sed -e 'p;s,.*/,,;n;h' -e 's|.*|.|' \ + -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \ + sed 'N;N;N;s,\n, ,g' | \ + $(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \ + { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \ + if ($$2 == $$4) files[d] = files[d] " " $$1; \ + else { print "f", $$3 "/" $$4, $$1; } } \ + END { for (d in files) print "f", d, files[d] }' | \ + while read type dir files; do \ + if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \ + test -z "$$files" || { \ + echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \ + $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \ + } \ + ; done uninstall-binPROGRAMS: @$(NORMAL_UNINSTALL) - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo "$$p" | sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \ - echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \ - rm -f "$(DESTDIR)$(bindir)/$$f"; \ - done + @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \ + files=`for p in $$list; do echo "$$p"; done | \ + sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \ + -e 's/$$/$(EXEEXT)/' `; \ + test -n "$$list" || exit 0; \ + echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ + cd "$(DESTDIR)$(bindir)" && rm -f $$files clean-binPROGRAMS: - @list='$(bin_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(bin_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list clean-checkPROGRAMS: - @list='$(check_PROGRAMS)'; for p in $$list; do \ - f=`echo $$p|sed 's/$(EXEEXT)$$//'`; \ - echo " rm -f $$p $$f"; \ - rm -f $$p $$f ; \ - done + @list='$(check_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ + rm -f $$list || exit $$?; \ + test -n "$(EXEEXT)" || exit 0; \ + list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \ + echo " rm -f" $$list; \ + rm -f $$list h5debug$(EXEEXT): $(h5debug_OBJECTS) $(h5debug_DEPENDENCIES) @rm -f h5debug$(EXEEXT) - $(LINK) $(h5debug_OBJECTS) $(h5debug_LDADD) $(LIBS) + $(h5debug_LINK) $(h5debug_OBJECTS) $(h5debug_LDADD) $(LIBS) h5mkgrp$(EXEEXT): $(h5mkgrp_OBJECTS) $(h5mkgrp_DEPENDENCIES) @rm -f h5mkgrp$(EXEEXT) - $(LINK) $(h5mkgrp_OBJECTS) $(h5mkgrp_LDADD) $(LIBS) + $(h5mkgrp_LINK) $(h5mkgrp_OBJECTS) $(h5mkgrp_LDADD) $(LIBS) h5repart$(EXEEXT): $(h5repart_OBJECTS) $(h5repart_DEPENDENCIES) @rm -f h5repart$(EXEEXT) - $(LINK) $(h5repart_OBJECTS) $(h5repart_LDADD) $(LIBS) + $(h5repart_LINK) $(h5repart_OBJECTS) $(h5repart_LDADD) $(LIBS) h5repart_gentest$(EXEEXT): $(h5repart_gentest_OBJECTS) $(h5repart_gentest_DEPENDENCIES) @rm -f h5repart_gentest$(EXEEXT) $(LINK) $(h5repart_gentest_OBJECTS) $(h5repart_gentest_LDADD) $(LIBS) @@ -493,22 +552,37 @@ repart_test$(EXEEXT): $(repart_test_OBJECTS) $(repart_test_DEPENDENCIES) install-binSCRIPTS: $(bin_SCRIPTS) @$(NORMAL_INSTALL) test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)" - @list='$(bin_SCRIPTS)'; for p in $$list; do \ + @list='$(bin_SCRIPTS)'; test -n "$(bindir)" || list=; \ + for p in $$list; do \ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ - if test -f $$d$$p; then \ - f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \ - echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \ - $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \ - else :; fi; \ - done + if test -f "$$d$$p"; then echo "$$d$$p"; echo "$$p"; else :; fi; \ + done | \ + sed -e 'p;s,.*/,,;n' \ + -e 'h;s|.*|.|' \ + -e 'p;x;s,.*/,,;$(transform)' | sed 'N;N;N;s,\n, ,g' | \ + $(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1; } \ + { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \ + if ($$2 == $$4) { files[d] = files[d] " " $$1; \ + if (++n[d] == $(am__install_max)) { \ + print "f", d, files[d]; n[d] = 0; files[d] = "" } } \ + else { print "f", d "/" $$4, $$1 } } \ + END { for (d in files) print "f", d, files[d] }' | \ + while read type dir files; do \ + if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \ + test -z "$$files" || { \ + echo " $(INSTALL_SCRIPT) $$files '$(DESTDIR)$(bindir)$$dir'"; \ + $(INSTALL_SCRIPT) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \ + } \ + ; done uninstall-binSCRIPTS: @$(NORMAL_UNINSTALL) - @list='$(bin_SCRIPTS)'; for p in $$list; do \ - f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \ - echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \ - rm -f "$(DESTDIR)$(bindir)/$$f"; \ - done + @list='$(bin_SCRIPTS)'; test -n "$(bindir)" || exit 0; \ + files=`for p in $$list; do echo "$$p"; done | \ + sed -e 's,.*/,,;$(transform)'`; \ + test -n "$$list" || exit 0; \ + echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \ + cd "$(DESTDIR)$(bindir)" && rm -f $$files mostlyclean-compile: -rm -f *.$(OBJEXT) @@ -524,21 +598,21 @@ distclean-compile: .c.o: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c $< .c.obj: @am__fastdepCC_TRUE@ $(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'` -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(COMPILE) -c `$(CYGPATH_W) '$<'` .c.lo: @am__fastdepCC_TRUE@ $(LTCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $< -@am__fastdepCC_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo +@am__fastdepCC_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo @AMDEP_TRUE@@am__fastdepCC_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@ @AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@ @am__fastdepCC_FALSE@ $(LTCOMPILE) -c -o $@ $< @@ -561,7 +635,7 @@ tags: TAGS TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ + set x; \ here=`pwd`; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ @@ -569,29 +643,34 @@ TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \ + shift; \ + if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \ test -n "$$unique" || unique=$$empty_fix; \ - $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ - $$tags $$unique; \ + if test $$# -gt 0; then \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + "$$@" $$unique; \ + else \ + $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \ + $$unique; \ + fi; \ fi ctags: CTAGS CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \ $(TAGS_FILES) $(LISP) - tags=; \ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \ unique=`for i in $$list; do \ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \ done | \ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \ END { if (nonempty) { for (i in files) print i; }; }'`; \ - test -z "$(CTAGS_ARGS)$$tags$$unique" \ + test -z "$(CTAGS_ARGS)$$unique" \ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \ - $$tags $$unique + $$unique GTAGS: here=`$(am__cd) $(top_builddir) && pwd` \ - && cd $(top_srcdir) \ - && gtags -i $(GTAGS_ARGS) $$here + && $(am__cd) $(top_srcdir) \ + && gtags -i $(GTAGS_ARGS) "$$here" distclean-tags: -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags @@ -612,13 +691,17 @@ distdir: $(DISTFILES) if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ if test -d $$d/$$file; then \ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ + if test -d "$(distdir)/$$file"; then \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ + fi; \ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ - cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \ + find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \ fi; \ - cp -pR $$d/$$file $(distdir)$$dir || exit 1; \ + cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \ else \ - test -f $(distdir)/$$file \ - || cp -p $$d/$$file $(distdir)/$$file \ + test -f "$(distdir)/$$file" \ + || cp -p $$d/$$file "$(distdir)/$$file" \ || exit 1; \ fi; \ done @@ -652,6 +735,7 @@ clean-generic: distclean-generic: -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) + -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES) -test -z "$(DISTCLEANFILES)" || rm -f $(DISTCLEANFILES) maintainer-clean-generic: @@ -674,6 +758,8 @@ dvi-am: html: html-am +html-am: + info: info-am info-am: @@ -682,19 +768,29 @@ install-data-am: install-dvi: install-dvi-am +install-dvi-am: + install-exec-am: install-binPROGRAMS install-binSCRIPTS \ install-exec-local install-html: install-html-am +install-html-am: + install-info: install-info-am +install-info-am: + install-man: install-pdf: install-pdf-am +install-pdf-am: + install-ps: install-ps-am +install-ps-am: + installcheck-am: maintainer-clean: maintainer-clean-am @@ -718,7 +814,7 @@ ps-am: uninstall-am: uninstall-binPROGRAMS uninstall-binSCRIPTS \ uninstall-local -.MAKE: install-am install-strip +.MAKE: check-am install-am install-strip .PHONY: CTAGS GTAGS all all-am all-local check check-TESTS check-am \ clean clean-binPROGRAMS clean-checkPROGRAMS clean-generic \ @@ -952,6 +1048,7 @@ check-vfd: $(LIB) $(PROGS) $(TESTS) HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ fi; \ done + # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: diff --git a/tools/testfiles/tarray8.ddl b/tools/testfiles/tarray8.ddl new file mode 100644 index 0000000..cf9ebc3 --- /dev/null +++ b/tools/testfiles/tarray8.ddl @@ -0,0 +1,14 @@ +############################# +Expected output for 'h5dump tarray8.h5' +############################# +HDF5 "tarray8.h5" { +GROUP "/" { + DATASET "DS1" { + DATATYPE H5T_ARRAY { [1025] H5T_STD_I32LE } + DATASPACE SIMPLE { ( 1 ) / ( 1 ) } + DATA { + (0): [ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 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