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-rw-r--r--tools/h5dump/h5dump.c172
-rw-r--r--tools/h5dump/h5dumpgentest.c17
-rwxr-xr-xtools/h5dump/testh5dump.sh2
3 files changed, 124 insertions, 67 deletions
diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c
index f39c47a..ed7b713 100644
--- a/tools/h5dump/h5dump.c
+++ b/tools/h5dump/h5dump.c
@@ -1025,20 +1025,22 @@ dump_dataspace(hid_t space)
hsize_t size[H5DUMP_MAX_RANK];
hsize_t maxsize[H5DUMP_MAX_RANK];
int ndims = H5Sget_simple_extent_dims(space, size, maxsize);
+ H5S_class_t space_type = H5Sget_simple_extent_type(space);
int i;
indentation(indent + COL);
printf("%s ", dump_header_format->dataspacebegin);
- if (H5Sis_simple(space)) {
- if (ndims == 0) {
+ switch (space_type) {
+ case H5S_SCALAR:
/* scalar dataspace */
HDfprintf(stdout, "%s %s",
- dump_header_format->dataspacedescriptionbegin, SCALAR);
- } else {
+ dump_header_format->dataspacedescriptionbegin, S_SCALAR);
+ break;
+ case H5S_SIMPLE:
/* simple dataspace */
HDfprintf(stdout, "%s %s { %s %Hu",
- dump_header_format->dataspacedescriptionbegin, SIMPLE,
+ dump_header_format->dataspacedescriptionbegin, S_SIMPLE,
dump_header_format->dataspacedimbegin, size[0]);
for (i = 1; i < ndims; i++)
@@ -1061,9 +1063,19 @@ dump_dataspace(hid_t space)
HDfprintf(stdout, ", %Hu", maxsize[i]);
printf(" %s }", dump_header_format->dataspacedimend);
- }
- } else {
- printf("%s not yet implemented %s\n", BEGIN, END);
+
+ break;
+ case H5S_NULL:
+ /* nulldataspace */
+ HDfprintf(stdout, "%s %s",
+ dump_header_format->dataspacedescriptionbegin, S_NULL);
+ break;
+ case H5S_COMPLEX:
+ printf("%s not yet implemented %s\n", BEGIN, END);
+ break;
+ case H5S_NO_CLASS:
+ default:
+ printf("%s unknown dataspace %s\n", BEGIN, END);
}
end_obj(dump_header_format->dataspaceend,
@@ -1866,6 +1878,7 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset)
int status = -1;
void *buf;
hid_t space, type, p_type;
+ H5S_class_t space_type;
int ndims, i;
hsize_t size[64], nelmts = 1, alloc_size;
int depth;
@@ -1934,28 +1947,33 @@ dump_data(hid_t obj_id, int obj_data, struct subset_t *sset)
H5Tclose(f_type);
} else {
/* need to call h5tools_dump_mem for the attribute data */
- type = H5Aget_type(obj_id);
- p_type = H5Tget_native_type(type,H5T_DIR_DEFAULT);
space = H5Aget_space(obj_id);
- ndims = H5Sget_simple_extent_dims(space, size, NULL);
+ space_type = H5Sget_simple_extent_type(space);
+ if(space_type == H5S_NULL || space_type == H5S_NO_CLASS || space_type == H5S_COMPLEX) {
+ status = SUCCEED;
+ } else {
+ type = H5Aget_type(obj_id);
+ p_type = H5Tget_native_type(type,H5T_DIR_DEFAULT);
+ ndims = H5Sget_simple_extent_dims(space, size, NULL);
- for (i = 0; i < ndims; i++)
- nelmts *= size[i];
+ for (i = 0; i < ndims; i++)
+ nelmts *= size[i];
- alloc_size = nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type));
- assert(alloc_size == (hsize_t)((size_t)alloc_size)); /*check for overflow*/
-
- buf = malloc((size_t)alloc_size);
- assert(buf);
+ alloc_size = nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type));
+ assert(alloc_size == (hsize_t)((size_t)alloc_size)); /*check for overflow*/
+
+ buf = malloc((size_t)alloc_size);
+ assert(buf);
- if (H5Aread(obj_id, p_type, buf) >= 0)
- status = h5tools_dump_mem(stdout, outputformat, obj_id, p_type,
- space, buf, depth);
-
- free(buf);
- H5Tclose(p_type);
+ if (H5Aread(obj_id, p_type, buf) >= 0)
+ status = h5tools_dump_mem(stdout, outputformat, obj_id, p_type,
+ space, buf, depth);
+
+ free(buf);
+ H5Tclose(p_type);
+ H5Tclose(type);
+ }
H5Sclose(space);
- H5Tclose(type);
}
if (status == FAIL) {
@@ -4108,17 +4126,20 @@ xml_dump_dataspace(hid_t space)
hsize_t maxsize[H5DUMP_MAX_RANK];
int ndims =
H5Sget_simple_extent_dims(space, size, maxsize);
+ H5S_class_t space_type = H5Sget_simple_extent_type(space);
int i;
indentation(indent + COL);
printf("<%sDataspace>\n", xmlnsprefix);
- if (H5Sis_simple(space)) {
- indentation(indent + COL + COL);
+ indentation(indent + COL + COL);
- if (ndims == 0) {
+ switch (space_type) {
+ case H5S_SCALAR:
/* scalar dataspace (just a tag, no XML attrs. defined */
printf("<%sScalarDataspace />\n",xmlnsprefix);
- } else {
+
+ break;
+ case H5S_SIMPLE:
/* simple dataspace */
/* <hdf5:SimpleDataspace Ndims="nd"> */
printf("<%sSimpleDataspace Ndims=\"%d\">\n",xmlnsprefix, ndims);
@@ -4142,14 +4163,24 @@ xml_dump_dataspace(hid_t space)
}
indentation(indent + COL + COL);
printf("</%sSimpleDataspace>\n", xmlnsprefix );
- }
- } else {
- printf("<!-- not yet implemented -->\n");
- }
+
+ break;
+ case H5S_NULL:
+ /* null dataspace (just a tag, no XML attrs. defined */
+ printf("<%sNullDataspace />\n",xmlnsprefix);
+ break;
+ case H5S_COMPLEX:
+ printf("<!-- not yet implemented -->\n");
+
+ break;
+ case H5S_NO_CLASS:
+ default:
+ printf("<!-- unknown dataspace -->\n");
+ }
+
indentation(indent + COL);
printf("</%sDataspace>\n", xmlnsprefix);
-
}
/*-------------------------------------------------------------------------
@@ -4174,6 +4205,7 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t UNUSED * sset)
int status = -1;
void *buf;
hid_t space, type, p_type;
+ H5S_class_t space_type;
int ndims, i;
hsize_t size[64], nelmts = 1;
int depth;
@@ -4207,48 +4239,56 @@ xml_dump_data(hid_t obj_id, int obj_data, struct subset_t UNUSED * sset)
} else {
/* Attribute data */
type = H5Aget_type(obj_id);
+ space = H5Aget_space(obj_id);
+ space_type = H5Sget_simple_extent_type(space);
- if (H5Tget_class(type) == H5T_REFERENCE) {
- /* references are done differently than
- the standard output:
- XML dumps a path to the object
- referenced.
- */
- status = xml_print_refs(obj_id, ATTRIBUTE_DATA);
- H5Tclose(type);
- } else if (H5Tget_class(type) == H5T_STRING) {
- status = xml_print_strs(obj_id, ATTRIBUTE_DATA);
- } else {
- /* all other data */
- p_type = H5Tget_native_type(type,H5T_DIR_DEFAULT);
- H5Tclose(type);
-
- space = H5Aget_space(obj_id);
+ if(space_type == H5S_NULL || space_type == H5S_NO_CLASS || space_type == H5S_COMPLEX) {
+ status = 2;
+ } else {
+ if (H5Tget_class(type) == H5T_REFERENCE) {
+ /* references are done differently than
+ the standard output:
+ XML dumps a path to the object
+ referenced.
+ */
+ status = xml_print_refs(obj_id, ATTRIBUTE_DATA);
+ H5Tclose(type);
+ } else if (H5Tget_class(type) == H5T_STRING) {
+ status = xml_print_strs(obj_id, ATTRIBUTE_DATA);
+ } else {
+ /* all other data */
+ p_type = H5Tget_native_type(type,H5T_DIR_DEFAULT);
+ H5Tclose(type);
- ndims = H5Sget_simple_extent_dims(space, size, NULL);
+ ndims = H5Sget_simple_extent_dims(space, size, NULL);
- for (i = 0; i < ndims; i++)
- nelmts *= size[i];
+ for (i = 0; i < ndims; i++)
+ nelmts *= size[i];
- buf =
- malloc((size_t)(nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type))));
- assert(buf);
+ buf =
+ malloc((size_t)(nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type))));
+ assert(buf);
- if (H5Aread(obj_id, p_type, buf) >= 0)
- status = h5tools_dump_mem(stdout, outputformat, obj_id,
- p_type, space, buf, depth);
+ if (H5Aread(obj_id, p_type, buf) >= 0)
+ status = h5tools_dump_mem(stdout, outputformat, obj_id,
+ p_type, space, buf, depth);
- free(buf);
- H5Tclose(p_type);
- H5Sclose(space);
- H5Tclose(type);
- }
+ free(buf);
+ H5Tclose(p_type);
+ H5Sclose(space);
+ H5Tclose(type);
+ }
+ }
}
if (status == FAIL) {
- indentation(indent + COL);
+ indentation(indent + COL + COL);
printf("Unable to print data.\n");
status = 1;
+ } else if (status == 2) { /* special value for H5S_NULL */
+ indentation(indent + COL + COL);
+ printf("<%sNoData/>\n",xmlnsprefix);
+ status = 1;
}
indentation(indent + COL);
@@ -5411,7 +5451,7 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t UNUSED * sset)
/* no data written */
indentation(indent);
printf("<%sData>\n",xmlnsprefix);
- indentation(indent);
+ indentation(indent + COL);
printf("<%sNoData/>\n",xmlnsprefix);
indentation(indent);
printf("</%sData>\n",xmlnsprefix);
diff --git a/tools/h5dump/h5dumpgentest.c b/tools/h5dump/h5dumpgentest.c
index 8eb50e1..b3c55a6 100644
--- a/tools/h5dump/h5dumpgentest.c
+++ b/tools/h5dump/h5dumpgentest.c
@@ -201,6 +201,7 @@ static void gent_dataset(void)
hsize_t dims[2];
int dset1[10][20];
double dset2[30][20];
+ int dset3 = 10;
int i, j;
fid = H5Fcreate(FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
@@ -231,6 +232,15 @@ static void gent_dataset(void)
H5Sclose(space);
H5Dclose(dataset);
+
+ /* dset3 - null space */
+ space = H5Screate(H5S_NULL);
+ dataset = H5Dcreate(fid, "/dset3", H5T_STD_I32BE, space, H5P_DEFAULT);
+ /* nothing should be written */
+ H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &dset3);
+
+ H5Sclose(space);
+ H5Dclose(dataset);
H5Fclose(fid);
}
@@ -338,6 +348,13 @@ static void gent_attribute(void)
H5Tset_size(type, 17);
attr = H5Acreate (root, "attr5", type, space, H5P_DEFAULT);
H5Awrite(attr, type, string);
+ H5Sclose(space);
+ H5Aclose(attr);
+
+ /* attribute 6 - null dataspace */
+ space = H5Screate(H5S_NULL);
+ attr = H5Acreate (root, "attr6", H5T_NATIVE_UINT, space, H5P_DEFAULT);
+ H5Awrite(attr, H5T_NATIVE_INT, &point); /* Nothing can be written */
H5Tclose(type);
H5Sclose(space);
diff --git a/tools/h5dump/testh5dump.sh b/tools/h5dump/testh5dump.sh
index c0b5165..598c32c 100755
--- a/tools/h5dump/testh5dump.sh
+++ b/tools/h5dump/testh5dump.sh
@@ -92,7 +92,7 @@ TOOLTEST tgroup-2.ddl --group=/g2 --group / -g /y tgroup.h5
# test for displaying simple space datasets
TOOLTEST tdset-1.ddl tdset.h5
# test for displaying selected datasets
-TOOLTEST tdset-2.ddl -H -d dset1 -d /dset2 --dataset=dset3 tdset.h5
+TOOLTEST tdset-2.ddl -H -d dset1 -d /dset2 -d dset3 --dataset=dset4 tdset.h5
# test for displaying attributes
TOOLTEST tattr-1.ddl tattr.h5
generated by cgit v0.12 at 2024-11-12 00:47:25 (GMT)