diff options
Diffstat (limited to 'tools')
25 files changed, 301 insertions, 142 deletions
diff --git a/tools/h5dump/Makefile.am b/tools/h5dump/Makefile.am index 93ba195..4b56c96 100644 --- a/tools/h5dump/Makefile.am +++ b/tools/h5dump/Makefile.am @@ -46,6 +46,6 @@ h5dump_SOURCES=h5dump.c h5dump_ddl.c h5dump_xml.c # Temporary files. *.h5 are generated by h5dumpgentest. They should # copied to the testfiles/ directory if update is required. CHECK_CLEANFILES+=*.h5 *.bin -DISTCLEANFILES=testh5dump.sh testh5dumppbits.sh testh5dumpxml.sh +DISTCLEANFILES= #testh5dump.sh testh5dumppbits.sh testh5dumpxml.sh include $(top_srcdir)/config/conclude.am diff --git a/tools/h5dump/errfiles/filter_fail.err b/tools/h5dump/errfiles/filter_fail.err index db21044..061a0e3 100644 --- a/tools/h5dump/errfiles/filter_fail.err +++ b/tools/h5dump/errfiles/filter_fail.err @@ -2,19 +2,25 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Dread(): can't read data major: Dataset minor: Read failed - #001: (file name) line (number) in H5D__read(): can't read data + #001: (file name) line (number) in H5VL_dataset_read(): read failed + major: Virtual Object Layer + minor: Read failed + #002: (file name) line (number) in H5VL_native_dataset_read(): can't read data + major: Dataset + minor: Read failed + #003: (file name) line (number) in H5D__read(): can't read data major: Dataset minor: Read failed - #002: (file name) line (number) in H5D__chunk_read(): unable to read raw data chunk + #004: (file name) line (number) in H5D__chunk_read(): unable to read raw data chunk major: Low-level I/O minor: Read failed - #003: (file name) line (number) in H5D__chunk_lock(): data pipeline read failed + #005: (file name) line (number) in H5D__chunk_lock(): data pipeline read failed major: Data filters minor: Filter operation failed - #004: (file name) line (number) in H5Z_pipeline(): required filter 'filter_fail_test' is not registered + #006: (file name) line (number) in H5Z_pipeline(): required filter 'filter_fail_test' is not registered major: Data filters minor: Read failed - #005: (file name) line (number) in H5PL_load(): required dynamically loaded plugin filter '312' is not available + #007: (file name) line (number) in H5PL_load(): required dynamically loaded plugin filter '312' is not available major: Plugin for dynamically loaded library minor: Unable to load metadata into cache h5dump error: unable to print data diff --git a/tools/h5dump/errfiles/tall-1.err b/tools/h5dump/errfiles/tall-1.err index ab9dbe3..eb80caf 100644 --- a/tools/h5dump/errfiles/tall-1.err +++ b/tools/h5dump/errfiles/tall-1.err @@ -2,24 +2,30 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object major: Object header minor: Can't open object - #001: (file name) line (number) in H5O_open_name(): object not found + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to open object + major: Object header + minor: Can't open object + #003: (file name) line (number) in H5O_open_name(): object not found major: Object header minor: Object not found - #002: (file name) line (number) in H5G_loc_find(): can't find object + #004: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse(): internal path traversal failed + #005: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #004: (file name) line (number) in H5G_traverse_real(): special link traversal failed + #006: (file name) line (number) in H5G_traverse_real(): special link traversal failed major: Links minor: Link traversal failure - #005: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed + #007: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed major: Links minor: Link traversal failure - #006: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID + #008: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID major: Symbol table minor: Unable to find atom information (already closed?) - #007: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'somefile', temp_file_name = 'somefile' + #009: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'somefile', temp_file_name = 'somefile' major: Links minor: Unable to open file diff --git a/tools/h5dump/errfiles/tall-2A.err b/tools/h5dump/errfiles/tall-2A.err index ab9dbe3..eb80caf 100644 --- a/tools/h5dump/errfiles/tall-2A.err +++ b/tools/h5dump/errfiles/tall-2A.err @@ -2,24 +2,30 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object major: Object header minor: Can't open object - #001: (file name) line (number) in H5O_open_name(): object not found + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to open object + major: Object header + minor: Can't open object + #003: (file name) line (number) in H5O_open_name(): object not found major: Object header minor: Object not found - #002: (file name) line (number) in H5G_loc_find(): can't find object + #004: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse(): internal path traversal failed + #005: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #004: (file name) line (number) in H5G_traverse_real(): special link traversal failed + #006: (file name) line (number) in H5G_traverse_real(): special link traversal failed major: Links minor: Link traversal failure - #005: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed + #007: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed major: Links minor: Link traversal failure - #006: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID + #008: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID major: Symbol table minor: Unable to find atom information (already closed?) - #007: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'somefile', temp_file_name = 'somefile' + #009: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'somefile', temp_file_name = 'somefile' major: Links minor: Unable to open file diff --git a/tools/h5dump/errfiles/tall-2A0.err b/tools/h5dump/errfiles/tall-2A0.err index ab9dbe3..eb80caf 100644 --- a/tools/h5dump/errfiles/tall-2A0.err +++ b/tools/h5dump/errfiles/tall-2A0.err @@ -2,24 +2,30 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object major: Object header minor: Can't open object - #001: (file name) line (number) in H5O_open_name(): object not found + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to open object + major: Object header + minor: Can't open object + #003: (file name) line (number) in H5O_open_name(): object not found major: Object header minor: Object not found - #002: (file name) line (number) in H5G_loc_find(): can't find object + #004: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse(): internal path traversal failed + #005: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #004: (file name) line (number) in H5G_traverse_real(): special link traversal failed + #006: (file name) line (number) in H5G_traverse_real(): special link traversal failed major: Links minor: Link traversal failure - #005: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed + #007: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed major: Links minor: Link traversal failure - #006: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID + #008: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID major: Symbol table minor: Unable to find atom information (already closed?) - #007: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'somefile', temp_file_name = 'somefile' + #009: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'somefile', temp_file_name = 'somefile' major: Links minor: Unable to open file diff --git a/tools/h5dump/errfiles/tall-2B.err b/tools/h5dump/errfiles/tall-2B.err index ab9dbe3..eb80caf 100644 --- a/tools/h5dump/errfiles/tall-2B.err +++ b/tools/h5dump/errfiles/tall-2B.err @@ -2,24 +2,30 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object major: Object header minor: Can't open object - #001: (file name) line (number) in H5O_open_name(): object not found + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to open object + major: Object header + minor: Can't open object + #003: (file name) line (number) in H5O_open_name(): object not found major: Object header minor: Object not found - #002: (file name) line (number) in H5G_loc_find(): can't find object + #004: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse(): internal path traversal failed + #005: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #004: (file name) line (number) in H5G_traverse_real(): special link traversal failed + #006: (file name) line (number) in H5G_traverse_real(): special link traversal failed major: Links minor: Link traversal failure - #005: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed + #007: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed major: Links minor: Link traversal failure - #006: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID + #008: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID major: Symbol table minor: Unable to find atom information (already closed?) - #007: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'somefile', temp_file_name = 'somefile' + #009: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'somefile', temp_file_name = 'somefile' major: Links minor: Unable to open file diff --git a/tools/h5dump/errfiles/tarray1_big.err b/tools/h5dump/errfiles/tarray1_big.err index 7a0fd7b..0691f0b 100644 --- a/tools/h5dump/errfiles/tarray1_big.err +++ b/tools/h5dump/errfiles/tarray1_big.err @@ -2,21 +2,39 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Rdereference2(): unable to dereference object major: References minor: Unable to initialize object - #001: (file name) line (number) in H5R_dereference(): Undefined reference pointer + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to dereference object + major: References + minor: Unable to initialize object + #003: (file name) line (number) in H5R_dereference(): Undefined reference pointer major: Invalid arguments to routine minor: Bad value HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Rdereference2(): unable to dereference object major: References minor: Unable to initialize object - #001: (file name) line (number) in H5R_dereference(): Undefined reference pointer + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to dereference object + major: References + minor: Unable to initialize object + #003: (file name) line (number) in H5R_dereference(): Undefined reference pointer major: Invalid arguments to routine minor: Bad value HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Rdereference2(): unable to dereference object major: References minor: Unable to initialize object - #001: (file name) line (number) in H5R_dereference(): Undefined reference pointer + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to dereference object + major: References + minor: Unable to initialize object + #003: (file name) line (number) in H5R_dereference(): Undefined reference pointer major: Invalid arguments to routine minor: Bad value H5tools-DIAG: Error detected in HDF5:tools (version (number)) thread (IDs): diff --git a/tools/h5dump/errfiles/tattr-3.err b/tools/h5dump/errfiles/tattr-3.err index ce8ddda..70ba935 100644 --- a/tools/h5dump/errfiles/tattr-3.err +++ b/tools/h5dump/errfiles/tattr-3.err @@ -1,8 +1,14 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): - #000: (file name) line (number) in H5Aopen(): unable to load attribute info from object header for attribute: 'attr' + #000: (file name) line (number) in H5Aopen(): unable to open attribute + major: Symbol table + minor: Can't open object + #001: (file name) line (number) in H5VL_attr_open(): attribute open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_attr_open(): unable to load attribute info from object header for attribute: 'attr' major: Attribute minor: Unable to initialize object - #001: (file name) line (number) in H5O_attr_open_by_name(): can't locate attribute: 'attr' + #003: (file name) line (number) in H5O_attr_open_by_name(): can't locate attribute: 'attr' major: Attribute minor: Object not found h5dump error: unable to open attribute "attr" diff --git a/tools/h5dump/errfiles/tattrregR.err b/tools/h5dump/errfiles/tattrregR.err index 9449a6d..e57fef1 100644 --- a/tools/h5dump/errfiles/tattrregR.err +++ b/tools/h5dump/errfiles/tattrregR.err @@ -2,14 +2,26 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Rdereference2(): unable to dereference object major: References minor: Unable to initialize object - #001: (file name) line (number) in H5R_dereference(): Undefined reference pointer + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to dereference object + major: References + minor: Unable to initialize object + #003: (file name) line (number) in H5R_dereference(): Undefined reference pointer major: Invalid arguments to routine minor: Bad value HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Rdereference2(): unable to dereference object major: References minor: Unable to initialize object - #001: (file name) line (number) in H5R_dereference(): Undefined reference pointer + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to dereference object + major: References + minor: Unable to initialize object + #003: (file name) line (number) in H5R_dereference(): Undefined reference pointer major: Invalid arguments to routine minor: Bad value H5tools-DIAG: Error detected in HDF5:tools (version (number)) thread (IDs): diff --git a/tools/h5dump/errfiles/tcomp-3.err b/tools/h5dump/errfiles/tcomp-3.err index ee47ee5..1e798d0 100644 --- a/tools/h5dump/errfiles/tcomp-3.err +++ b/tools/h5dump/errfiles/tcomp-3.err @@ -1,16 +1,22 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): - #000: (file name) line (number) in H5Topen2(): not found + #000: (file name) line (number) in H5Topen2(): unable to open datatype + major: Symbol table + minor: Can't open object + #001: (file name) line (number) in H5VL_datatype_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_datatype_open(): not found major: Datatype minor: Object not found - #001: (file name) line (number) in H5G_loc_find(): can't find object + #003: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #002: (file name) line (number) in H5G_traverse(): internal path traversal failed + #004: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse_real(): traversal operator failed + #005: (file name) line (number) in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed - #004: (file name) line (number) in H5G_loc_find_cb(): object '#6632' doesn't exist + #006: (file name) line (number) in H5G_loc_find_cb(): object '#6632' doesn't exist major: Symbol table minor: Object not found diff --git a/tools/h5dump/errfiles/tdataregR.err b/tools/h5dump/errfiles/tdataregR.err index 9449a6d..e57fef1 100644 --- a/tools/h5dump/errfiles/tdataregR.err +++ b/tools/h5dump/errfiles/tdataregR.err @@ -2,14 +2,26 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Rdereference2(): unable to dereference object major: References minor: Unable to initialize object - #001: (file name) line (number) in H5R_dereference(): Undefined reference pointer + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to dereference object + major: References + minor: Unable to initialize object + #003: (file name) line (number) in H5R_dereference(): Undefined reference pointer major: Invalid arguments to routine minor: Bad value HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Rdereference2(): unable to dereference object major: References minor: Unable to initialize object - #001: (file name) line (number) in H5R_dereference(): Undefined reference pointer + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to dereference object + major: References + minor: Unable to initialize object + #003: (file name) line (number) in H5R_dereference(): Undefined reference pointer major: Invalid arguments to routine minor: Bad value H5tools-DIAG: Error detected in HDF5:tools (version (number)) thread (IDs): diff --git a/tools/h5dump/errfiles/tdset-2.err b/tools/h5dump/errfiles/tdset-2.err index 775351e..cef8c0a 100644 --- a/tools/h5dump/errfiles/tdset-2.err +++ b/tools/h5dump/errfiles/tdset-2.err @@ -2,35 +2,47 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Dopen2(): unable to open dataset major: Dataset minor: Can't open object - #001: (file name) line (number) in H5D__open_name(): not found + #001: (file name) line (number) in H5VL_dataset_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_dataset_open(): unable to open dataset + major: Dataset + minor: Can't open object + #003: (file name) line (number) in H5D__open_name(): not found major: Dataset minor: Object not found - #002: (file name) line (number) in H5G_loc_find(): can't find object + #004: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse(): internal path traversal failed + #005: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #004: (file name) line (number) in H5G_traverse_real(): traversal operator failed + #006: (file name) line (number) in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed - #005: (file name) line (number) in H5G_loc_find_cb(): object 'dset3' doesn't exist + #007: (file name) line (number) in H5G_loc_find_cb(): object 'dset3' doesn't exist major: Symbol table minor: Object not found HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Lget_info(): unable to get link info + major: Internal error (too specific to document in detail) + minor: Can't get value + #001: (file name) line (number) in H5VL_link_get(): get failed + major: Virtual Object Layer + minor: Can't get value + #002: (file name) line (number) in H5VL_native_link_get(): unable to get link info major: Symbol table minor: Object not found - #001: (file name) line (number) in H5L_get_info(): name doesn't exist + #003: (file name) line (number) in H5L_get_info(): name doesn't exist major: Symbol table minor: Object already exists - #002: (file name) line (number) in H5G_traverse(): internal path traversal failed + #004: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse_real(): traversal operator failed + #005: (file name) line (number) in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed - #004: (file name) line (number) in H5L_get_info_cb(): name doesn't exist + #006: (file name) line (number) in H5L_get_info_cb(): name doesn't exist major: Symbol table minor: Object not found h5dump error: unable to get link info from "dset3" diff --git a/tools/h5dump/errfiles/textlink.err b/tools/h5dump/errfiles/textlink.err index 95556db..5c3e373 100644 --- a/tools/h5dump/errfiles/textlink.err +++ b/tools/h5dump/errfiles/textlink.err @@ -2,49 +2,61 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object major: Object header minor: Can't open object - #001: (file name) line (number) in H5O_open_name(): object not found + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to open object + major: Object header + minor: Can't open object + #003: (file name) line (number) in H5O_open_name(): object not found major: Object header minor: Object not found - #002: (file name) line (number) in H5G_loc_find(): can't find object + #004: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse(): internal path traversal failed + #005: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #004: (file name) line (number) in H5G_traverse_real(): special link traversal failed + #006: (file name) line (number) in H5G_traverse_real(): special link traversal failed major: Links minor: Link traversal failure - #005: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed + #007: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed major: Links minor: Link traversal failure - #006: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID + #008: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID major: Symbol table minor: Unable to find atom information (already closed?) - #007: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'filename', temp_file_name = 'filename' + #009: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'filename', temp_file_name = 'filename' major: Links minor: Unable to open file HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object major: Object header minor: Can't open object - #001: (file name) line (number) in H5O_open_name(): object not found + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to open object + major: Object header + minor: Can't open object + #003: (file name) line (number) in H5O_open_name(): object not found major: Object header minor: Object not found - #002: (file name) line (number) in H5G_loc_find(): can't find object + #004: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse(): internal path traversal failed + #005: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #004: (file name) line (number) in H5G_traverse_real(): special link traversal failed + #006: (file name) line (number) in H5G_traverse_real(): special link traversal failed major: Links minor: Link traversal failure - #005: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed + #007: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed major: Links minor: Link traversal failure - #006: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID + #008: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID major: Symbol table minor: Unable to find atom information (already closed?) - #007: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'anotherfile', temp_file_name = 'anotherfile' + #009: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'anotherfile', temp_file_name = 'anotherfile' major: Links minor: Unable to open file diff --git a/tools/h5dump/errfiles/textlinkfar.err b/tools/h5dump/errfiles/textlinkfar.err index 5aa7f87..ed1a76f 100644 --- a/tools/h5dump/errfiles/textlinkfar.err +++ b/tools/h5dump/errfiles/textlinkfar.err @@ -2,49 +2,55 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object major: Object header minor: Can't open object - #001: (file name) line (number) in H5O_open_name(): object not found + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to open object + major: Object header + minor: Can't open object + #003: (file name) line (number) in H5O_open_name(): object not found major: Object header minor: Object not found - #002: (file name) line (number) in H5G_loc_find(): can't find object + #004: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse(): internal path traversal failed + #005: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #004: (file name) line (number) in H5G_traverse_real(): special link traversal failed + #006: (file name) line (number) in H5G_traverse_real(): special link traversal failed major: Links minor: Link traversal failure - #005: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed + #007: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed major: Links minor: Link traversal failure - #006: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID + #008: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID major: Symbol table minor: Unable to find atom information (already closed?) - #007: (file name) line (number) in H5L_extern_traverse(): unable to open object + #009: (file name) line (number) in H5L_extern_traverse(): unable to open object major: Symbol table minor: Can't open object - #008: (file name) line (number) in H5O_open_name(): object not found + #010: (file name) line (number) in H5O_open_name(): object not found major: Object header minor: Object not found - #009: (file name) line (number) in H5G_loc_find(): can't find object + #011: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #010: (file name) line (number) in H5G_traverse(): internal path traversal failed + #012: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #011: (file name) line (number) in H5G_traverse_real(): special link traversal failed + #013: (file name) line (number) in H5G_traverse_real(): special link traversal failed major: Links minor: Link traversal failure - #012: (file name) line (number) in H5G__traverse_special(): symbolic link traversal failed + #014: (file name) line (number) in H5G__traverse_special(): symbolic link traversal failed major: Links minor: Link traversal failure - #013: (file name) line (number) in H5G_traverse_slink(): unable to follow symbolic link + #015: (file name) line (number) in H5G_traverse_slink(): unable to follow symbolic link major: Symbol table minor: Object not found - #014: (file name) line (number) in H5G_traverse_real(): traversal operator failed + #016: (file name) line (number) in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed - #015: (file name) line (number) in H5G_traverse_slink_cb(): component not found + #017: (file name) line (number) in H5G_traverse_slink_cb(): component not found major: Symbol table minor: Object not found HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): diff --git a/tools/h5dump/errfiles/textlinksrc.err b/tools/h5dump/errfiles/textlinksrc.err index 5aa7f87..ed1a76f 100644 --- a/tools/h5dump/errfiles/textlinksrc.err +++ b/tools/h5dump/errfiles/textlinksrc.err @@ -2,49 +2,55 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object major: Object header minor: Can't open object - #001: (file name) line (number) in H5O_open_name(): object not found + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to open object + major: Object header + minor: Can't open object + #003: (file name) line (number) in H5O_open_name(): object not found major: Object header minor: Object not found - #002: (file name) line (number) in H5G_loc_find(): can't find object + #004: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse(): internal path traversal failed + #005: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #004: (file name) line (number) in H5G_traverse_real(): special link traversal failed + #006: (file name) line (number) in H5G_traverse_real(): special link traversal failed major: Links minor: Link traversal failure - #005: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed + #007: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed major: Links minor: Link traversal failure - #006: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID + #008: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID major: Symbol table minor: Unable to find atom information (already closed?) - #007: (file name) line (number) in H5L_extern_traverse(): unable to open object + #009: (file name) line (number) in H5L_extern_traverse(): unable to open object major: Symbol table minor: Can't open object - #008: (file name) line (number) in H5O_open_name(): object not found + #010: (file name) line (number) in H5O_open_name(): object not found major: Object header minor: Object not found - #009: (file name) line (number) in H5G_loc_find(): can't find object + #011: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #010: (file name) line (number) in H5G_traverse(): internal path traversal failed + #012: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #011: (file name) line (number) in H5G_traverse_real(): special link traversal failed + #013: (file name) line (number) in H5G_traverse_real(): special link traversal failed major: Links minor: Link traversal failure - #012: (file name) line (number) in H5G__traverse_special(): symbolic link traversal failed + #014: (file name) line (number) in H5G__traverse_special(): symbolic link traversal failed major: Links minor: Link traversal failure - #013: (file name) line (number) in H5G_traverse_slink(): unable to follow symbolic link + #015: (file name) line (number) in H5G_traverse_slink(): unable to follow symbolic link major: Symbol table minor: Object not found - #014: (file name) line (number) in H5G_traverse_real(): traversal operator failed + #016: (file name) line (number) in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed - #015: (file name) line (number) in H5G_traverse_slink_cb(): component not found + #017: (file name) line (number) in H5G_traverse_slink_cb(): component not found major: Symbol table minor: Object not found HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): diff --git a/tools/h5dump/errfiles/tgroup-2.err b/tools/h5dump/errfiles/tgroup-2.err index 3659b5c..42c926f 100644 --- a/tools/h5dump/errfiles/tgroup-2.err +++ b/tools/h5dump/errfiles/tgroup-2.err @@ -2,19 +2,25 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object - #001: (file name) line (number) in H5G__open_name(): group not found + #001: (file name) line (number) in H5VL_group_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_group_open(): unable to open group + major: Symbol table + minor: Can't open object + #003: (file name) line (number) in H5G__open_name(): group not found major: Symbol table minor: Object not found - #002: (file name) line (number) in H5G_loc_find(): can't find object + #004: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse(): internal path traversal failed + #005: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #004: (file name) line (number) in H5G_traverse_real(): traversal operator failed + #006: (file name) line (number) in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed - #005: (file name) line (number) in H5G_loc_find_cb(): object 'y' doesn't exist + #007: (file name) line (number) in H5G_loc_find_cb(): object 'y' doesn't exist major: Symbol table minor: Object not found h5dump error: unable to open group "/y" diff --git a/tools/h5dump/errfiles/torderlinks1.err b/tools/h5dump/errfiles/torderlinks1.err index e665f03..89b79bc 100644 --- a/tools/h5dump/errfiles/torderlinks1.err +++ b/tools/h5dump/errfiles/torderlinks1.err @@ -2,24 +2,30 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object major: Object header minor: Can't open object - #001: (file name) line (number) in H5O_open_name(): object not found + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to open object + major: Object header + minor: Can't open object + #003: (file name) line (number) in H5O_open_name(): object not found major: Object header minor: Object not found - #002: (file name) line (number) in H5G_loc_find(): can't find object + #004: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse(): internal path traversal failed + #005: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #004: (file name) line (number) in H5G_traverse_real(): special link traversal failed + #006: (file name) line (number) in H5G_traverse_real(): special link traversal failed major: Links minor: Link traversal failure - #005: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed + #007: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed major: Links minor: Link traversal failure - #006: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID + #008: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID major: Symbol table minor: Unable to find atom information (already closed?) - #007: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'fname', temp_file_name = 'fname' + #009: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'fname', temp_file_name = 'fname' major: Links minor: Unable to open file diff --git a/tools/h5dump/errfiles/torderlinks2.err b/tools/h5dump/errfiles/torderlinks2.err index e665f03..89b79bc 100644 --- a/tools/h5dump/errfiles/torderlinks2.err +++ b/tools/h5dump/errfiles/torderlinks2.err @@ -2,24 +2,30 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object major: Object header minor: Can't open object - #001: (file name) line (number) in H5O_open_name(): object not found + #001: (file name) line (number) in H5VL_object_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_object_open(): unable to open object + major: Object header + minor: Can't open object + #003: (file name) line (number) in H5O_open_name(): object not found major: Object header minor: Object not found - #002: (file name) line (number) in H5G_loc_find(): can't find object + #004: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse(): internal path traversal failed + #005: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #004: (file name) line (number) in H5G_traverse_real(): special link traversal failed + #006: (file name) line (number) in H5G_traverse_real(): special link traversal failed major: Links minor: Link traversal failure - #005: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed + #007: (file name) line (number) in H5G__traverse_special(): user-defined link traversal failed major: Links minor: Link traversal failure - #006: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID + #008: (file name) line (number) in H5G_traverse_ud(): traversal callback returned invalid ID major: Symbol table minor: Unable to find atom information (already closed?) - #007: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'fname', temp_file_name = 'fname' + #009: (file name) line (number) in H5L_extern_traverse(): unable to open external file, external link file name = 'fname', temp_file_name = 'fname' major: Links minor: Unable to open file diff --git a/tools/h5dump/errfiles/tperror.err b/tools/h5dump/errfiles/tperror.err index 29f9e7f..bd5239b 100644 --- a/tools/h5dump/errfiles/tperror.err +++ b/tools/h5dump/errfiles/tperror.err @@ -2,35 +2,47 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Dopen2(): unable to open dataset major: Dataset minor: Can't open object - #001: (file name) line (number) in H5D__open_name(): not found + #001: (file name) line (number) in H5VL_dataset_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_dataset_open(): unable to open dataset + major: Dataset + minor: Can't open object + #003: (file name) line (number) in H5D__open_name(): not found major: Dataset minor: Object not found - #002: (file name) line (number) in H5G_loc_find(): can't find object + #004: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse(): internal path traversal failed + #005: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #004: (file name) line (number) in H5G_traverse_real(): traversal operator failed + #006: (file name) line (number) in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed - #005: (file name) line (number) in H5G_loc_find_cb(): object 'bogus' doesn't exist + #007: (file name) line (number) in H5G_loc_find_cb(): object 'bogus' doesn't exist major: Symbol table minor: Object not found HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Lget_info(): unable to get link info + major: Internal error (too specific to document in detail) + minor: Can't get value + #001: (file name) line (number) in H5VL_link_get(): get failed + major: Virtual Object Layer + minor: Can't get value + #002: (file name) line (number) in H5VL_native_link_get(): unable to get link info major: Symbol table minor: Object not found - #001: (file name) line (number) in H5L_get_info(): name doesn't exist + #003: (file name) line (number) in H5L_get_info(): name doesn't exist major: Symbol table minor: Object already exists - #002: (file name) line (number) in H5G_traverse(): internal path traversal failed + #004: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse_real(): traversal operator failed + #005: (file name) line (number) in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed - #004: (file name) line (number) in H5L_get_info_cb(): name doesn't exist + #006: (file name) line (number) in H5L_get_info_cb(): name doesn't exist major: Symbol table minor: Object not found h5dump error: unable to get link info from "bogus" diff --git a/tools/h5dump/errfiles/tslink-D.err b/tools/h5dump/errfiles/tslink-D.err index 924e9cf..676ce0f 100644 --- a/tools/h5dump/errfiles/tslink-D.err +++ b/tools/h5dump/errfiles/tslink-D.err @@ -2,27 +2,33 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Dopen2(): unable to open dataset major: Dataset minor: Can't open object - #001: (file name) line (number) in H5D__open_name(): not found + #001: (file name) line (number) in H5VL_dataset_open(): open failed + major: Virtual Object Layer + minor: Can't open object + #002: (file name) line (number) in H5VL_native_dataset_open(): unable to open dataset + major: Dataset + minor: Can't open object + #003: (file name) line (number) in H5D__open_name(): not found major: Dataset minor: Object not found - #002: (file name) line (number) in H5G_loc_find(): can't find object + #004: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse(): internal path traversal failed + #005: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #004: (file name) line (number) in H5G_traverse_real(): special link traversal failed + #006: (file name) line (number) in H5G_traverse_real(): special link traversal failed major: Links minor: Link traversal failure - #005: (file name) line (number) in H5G__traverse_special(): symbolic link traversal failed + #007: (file name) line (number) in H5G__traverse_special(): symbolic link traversal failed major: Links minor: Link traversal failure - #006: (file name) line (number) in H5G_traverse_slink(): unable to follow symbolic link + #008: (file name) line (number) in H5G_traverse_slink(): unable to follow symbolic link major: Symbol table minor: Object not found - #007: (file name) line (number) in H5G_traverse_real(): traversal operator failed + #009: (file name) line (number) in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed - #008: (file name) line (number) in H5G_traverse_slink_cb(): component not found + #010: (file name) line (number) in H5G_traverse_slink_cb(): component not found major: Symbol table minor: Object not found diff --git a/tools/h5jam/h5jam.c b/tools/h5jam/h5jam.c index ab38f65..19c0a41 100644 --- a/tools/h5jam/h5jam.c +++ b/tools/h5jam/h5jam.c @@ -250,7 +250,7 @@ main (int argc, const char *argv[]) leave (EXIT_FAILURE); } - testval = H5Fis_hdf5 (ub_file); + testval = H5Fis_accessible (ub_file, H5P_DEFAULT); if (testval > 0) { error_msg("-u <user_file> cannot be HDF5 file, but it appears to be an HDF5 file.\n"); @@ -264,7 +264,7 @@ main (int argc, const char *argv[]) leave (EXIT_FAILURE); } - testval = H5Fis_hdf5 (input_file); + testval = H5Fis_accessible (input_file, H5P_DEFAULT); if (testval <= 0) { error_msg("Input HDF5 file \"%s\" is not HDF5 format.\n", input_file); diff --git a/tools/h5jam/h5unjam.c b/tools/h5jam/h5unjam.c index 40358c6..7b4dc91 100644 --- a/tools/h5jam/h5unjam.c +++ b/tools/h5jam/h5unjam.c @@ -245,7 +245,7 @@ main(int argc, const char *argv[]) goto done; } - testval = H5Fis_hdf5(input_file); + testval = H5Fis_accessible(input_file, H5P_DEFAULT); if (testval <= 0) { error_msg("Input HDF5 file \"%s\" is not HDF\n", input_file); diff --git a/tools/h5jam/tellub.c b/tools/h5jam/tellub.c index b4f87af..c6e7fbe 100644 --- a/tools/h5jam/tellub.c +++ b/tools/h5jam/tellub.c @@ -155,7 +155,7 @@ main (int argc, const char *argv[]) ifname = HDstrdup (argv[opt_ind]); - testval = H5Fis_hdf5 (ifname); + testval = H5Fis_accessible (ifname, H5P_DEFAULT); if (testval <= 0) { diff --git a/tools/misc/h5debug.c b/tools/misc/h5debug.c index 480450d..282f386 100644 --- a/tools/misc/h5debug.c +++ b/tools/misc/h5debug.c @@ -259,7 +259,7 @@ main(int argc, char *argv[]) HDfprintf(stderr, "cannot open file\n"); HDexit(1); } /* end if */ - if(NULL == (f = (H5F_t *)H5I_object(fid))) { + if(NULL == (f = (H5F_t *)H5VL_object(fid))) { HDfprintf(stderr, "cannot obtain H5F_t pointer\n"); HDexit(2); } /* end if */ diff --git a/tools/misc/repart_test.c b/tools/misc/repart_test.c index e6da779..bf2c9b9 100644 --- a/tools/misc/repart_test.c +++ b/tools/misc/repart_test.c @@ -79,6 +79,9 @@ test_family_h5repart_opens(void) if((file=H5Fopen(FILENAME[1], H5F_ACC_RDWR, fapl))<0) goto error; + if(H5Pclose(fapl)<0) + goto error; + if(H5Fclose(file)<0) goto error; |