diff options
Diffstat (limited to 'tools')
94 files changed, 2654 insertions, 610 deletions
diff --git a/tools/Makefile.am b/tools/Makefile.am index 095cc30..38e853d 100644 --- a/tools/Makefile.am +++ b/tools/Makefile.am @@ -25,6 +25,6 @@ CONFIG=ordered # All subdirectories SUBDIRS=lib h5diff h5ls h5dump misc h5import h5repack h5jam h5copy h5stat \ - perform + perform include $(top_srcdir)/config/conclude.am diff --git a/tools/h5copy/h5copygentest.c b/tools/h5copy/h5copygentest.c index 49204f5..93203c6 100644 --- a/tools/h5copy/h5copygentest.c +++ b/tools/h5copy/h5copygentest.c @@ -22,6 +22,7 @@ /* HDF file names */ #define HDF_FILE1 "h5copytst.h5" +#define HDF_FILE1_NEW "h5copytst_new.h5" #define HDF_FILE2 "h5copy_ref.h5" #define HDF_EXT_SRC_FILE "h5copy_extlinks_src.h5" #define HDF_EXT_TRG_FILE "h5copy_extlinks_trg.h5" @@ -644,20 +645,41 @@ out: *------------------------------------------------------------------------*/ static void Test_Obj_Copy(void) { - hid_t fid=0; + hid_t fid = -1; /* File id */ + hid_t fapl_new = (-1); /* File access property id */ + unsigned new_format; /* New format or old format */ - /* Create source file */ - fid = H5Fcreate(HDF_FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - if (fid < 0) - { - fprintf(stderr, "Error: %s> H5Fcreate failed.\n", HDF_FILE1); + if((fapl_new = H5Pcreate(H5P_FILE_ACCESS)) < 0) { + fprintf(stderr, "Error: H5Pcreate failed.\n"); goto out; } + if(H5Pset_libver_bounds(fapl_new, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) { + fprintf(stderr, "Error: H5Pset_libver_bounds failed.\n"); + goto out; + } + + /* Test with old & new format groups */ + for(new_format = FALSE; new_format <= TRUE; new_format++) { + + /* Set the FAPL for the type of format */ + /* Create source file */ + if(new_format) + fid = H5Fcreate(HDF_FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, fapl_new); + else + fid = H5Fcreate(HDF_FILE1_NEW, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + if(fid < 0) { + fprintf(stderr, "Error: H5Fcreate failed.\n"); + goto out; + } + + gent_datasets(fid); + gent_empty_group(fid); + gent_nested_datasets(fid); + gent_nested_group(fid); - gent_datasets(fid); - gent_empty_group(fid); - gent_nested_datasets(fid); - gent_nested_group(fid); + H5Fclose(fid); + fid = (-1); + } /* end for */ out: /*----------------------------------------------------------------------- @@ -665,6 +687,8 @@ out: *------------------------------------------------------------------------*/ if(fid > 0) H5Fclose(fid); + if(fapl_new > 0) + H5Pclose(fapl_new); } /*------------------------------------------------------------------------- diff --git a/tools/h5copy/testfiles/h5copytst_new.h5 b/tools/h5copy/testfiles/h5copytst_new.h5 Binary files differnew file mode 100644 index 0000000..222c511 --- /dev/null +++ b/tools/h5copy/testfiles/h5copytst_new.h5 diff --git a/tools/h5copy/testfiles/h5copytst_new.out.ls b/tools/h5copy/testfiles/h5copytst_new.out.ls new file mode 100644 index 0000000..9df6b2e --- /dev/null +++ b/tools/h5copy/testfiles/h5copytst_new.out.ls @@ -0,0 +1,502 @@ +############################# +Expected output for 'h5ls ../testfiles/h5copytst_new.out.h5' +############################# +Opened "../testfiles/h5copytst_new.out.h5" with sec2 driver. +/ Group + Location: 1:96 + Links: 1 +/A Group + Location: 1:65602 + Links: 1 +/A/B1 Group + Location: 1:66306 + Links: 1 +/A/B1/simple Dataset {6/6} + Location: 1:65509 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/A/B2 Group + Location: 1:69807 + Links: 1 +/A/B2/simple2 Dataset {6/6} + Location: 1:69714 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/C Group + Location: 1:72980 + Links: 1 +/C/D Group + Location: 1:73684 + Links: 1 +/C/D/simple Dataset {6/6} + Location: 1:72887 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/E Group + Location: 1:76217 + Links: 1 +/E/F Group + Location: 1:76921 + Links: 1 +/E/F/grp_dsets Group + Location: 1:75044 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX +/E/F/grp_dsets/chunk Dataset {6/6} + Location: 1:76014 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Chunks: {2} 8 bytes + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/E/F/grp_dsets/compact Dataset {6/6} + Location: 1:75367 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/E/F/grp_dsets/compound Dataset {2/2} + Location: 1:75470 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: struct { + "str1" +0 20-byte null-terminated ASCII string + "str2" +20 20-byte null-terminated ASCII string + } 40 bytes +/E/F/grp_dsets/compressed Dataset {6/6} + Location: 1:75683 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Chunks: {2} 8 bytes + Storage: <details removed for portability> + Filter-0: deflate-1 OPT {1} + Type: 32-bit little-endian integer +/E/F/grp_dsets/named_vl Dataset {2/2} + Location: 1:75853 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: shared-1:75793 variable length of + 32-bit little-endian integer +/E/F/grp_dsets/nested_vl Dataset {2/2} + Location: 1:76108 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: variable length of + variable length of + 32-bit little-endian integer +/E/F/grp_dsets/simple Dataset {6/6} + Location: 1:75274 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/E/F/grp_dsets/vl Type + Location: 1:75793 + Links: 2 + Modified: XXXX-XX-XX XX:XX:XX XXX + Type: shared-1:75793 variable length of + 32-bit little-endian integer +/G Group + Location: 1:85688 + Links: 1 +/G/H Group + Location: 1:86392 + Links: 1 +/G/H/grp_nested Group + Location: 1:84436 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX +/G/H/grp_nested/grp_dsets Group + Location: 1:84515 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX +/G/H/grp_nested/grp_dsets/chunk Dataset {6/6} + Location: 1:85485 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Chunks: {2} 8 bytes + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/G/H/grp_nested/grp_dsets/compact Dataset {6/6} + Location: 1:84838 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/G/H/grp_nested/grp_dsets/compound Dataset {2/2} + Location: 1:84941 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: struct { + "str1" +0 20-byte null-terminated ASCII string + "str2" +20 20-byte null-terminated ASCII string + } 40 bytes +/G/H/grp_nested/grp_dsets/compressed Dataset {6/6} + Location: 1:85154 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Chunks: {2} 8 bytes + Storage: <details removed for portability> + Filter-0: deflate-1 OPT {1} + Type: 32-bit little-endian integer +/G/H/grp_nested/grp_dsets/named_vl Dataset {2/2} + Location: 1:85324 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: shared-1:85264 variable length of + 32-bit little-endian integer +/G/H/grp_nested/grp_dsets/nested_vl Dataset {2/2} + Location: 1:85579 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: variable length of + variable length of + 32-bit little-endian integer +/G/H/grp_nested/grp_dsets/simple Dataset {6/6} + Location: 1:84745 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/G/H/grp_nested/grp_dsets/vl Type + Location: 1:85264 + Links: 2 + Modified: XXXX-XX-XX XX:XX:XX XXX + Type: shared-1:85264 variable length of + 32-bit little-endian integer +/chunk Dataset {6/6} + Location: 1:2238 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Chunks: {2} 8 bytes + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/compact Dataset {6/6} + Location: 1:4240 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/compound Dataset {2/2} + Location: 1:6391 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: struct { + "str1" +0 20-byte null-terminated ASCII string + "str2" +20 20-byte null-terminated ASCII string + } 40 bytes +/compressed Dataset {6/6} + Location: 1:6604 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Chunks: {2} 8 bytes + Storage: <details removed for portability> + Filter-0: deflate-1 OPT {1} + Type: 32-bit little-endian integer +/grp_dsets Group + Location: 1:27748 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX +/grp_dsets/chunk Dataset {6/6} + Location: 1:28718 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Chunks: {2} 8 bytes + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/grp_dsets/compact Dataset {6/6} + Location: 1:28071 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/grp_dsets/compound Dataset {2/2} + Location: 1:28174 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: struct { + "str1" +0 20-byte null-terminated ASCII string + "str2" +20 20-byte null-terminated ASCII string + } 40 bytes +/grp_dsets/compressed Dataset {6/6} + Location: 1:28387 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Chunks: {2} 8 bytes + Storage: <details removed for portability> + Filter-0: deflate-1 OPT {1} + Type: 32-bit little-endian integer +/grp_dsets/named_vl Dataset {2/2} + Location: 1:28557 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: shared-1:28497 variable length of + 32-bit little-endian integer +/grp_dsets/nested_vl Dataset {2/2} + Location: 1:28812 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: variable length of + variable length of + 32-bit little-endian integer +/grp_dsets/simple Dataset {6/6} + Location: 1:27978 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/grp_dsets/simple_group Dataset {6/6} + Location: 1:46180 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/grp_dsets/vl Type + Location: 1:28497 + Links: 2 + Modified: XXXX-XX-XX XX:XX:XX XXX + Type: shared-1:28497 variable length of + 32-bit little-endian integer +/grp_empty Group + Location: 1:27693 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX +/grp_nested Group + Location: 1:35940 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX +/grp_nested/grp_dsets Group + Location: 1:36019 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX +/grp_nested/grp_dsets/chunk Dataset {6/6} + Location: 1:36989 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Chunks: {2} 8 bytes + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/grp_nested/grp_dsets/compact Dataset {6/6} + Location: 1:36342 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/grp_nested/grp_dsets/compound Dataset {2/2} + Location: 1:36445 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: struct { + "str1" +0 20-byte null-terminated ASCII string + "str2" +20 20-byte null-terminated ASCII string + } 40 bytes +/grp_nested/grp_dsets/compressed Dataset {6/6} + Location: 1:36658 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Chunks: {2} 8 bytes + Storage: <details removed for portability> + Filter-0: deflate-1 OPT {1} + Type: 32-bit little-endian integer +/grp_nested/grp_dsets/named_vl Dataset {2/2} + Location: 1:36828 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: shared-1:36768 variable length of + 32-bit little-endian integer +/grp_nested/grp_dsets/nested_vl Dataset {2/2} + Location: 1:37083 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: variable length of + variable length of + 32-bit little-endian integer +/grp_nested/grp_dsets/simple Dataset {6/6} + Location: 1:36249 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/grp_nested/grp_dsets/vl Type + Location: 1:36768 + Links: 2 + Modified: XXXX-XX-XX XX:XX:XX XXX + Type: shared-1:36768 variable length of + 32-bit little-endian integer +/grp_rename Group + Location: 1:47077 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX +/grp_rename/chunk Dataset {6/6} + Location: 1:48047 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Chunks: {2} 8 bytes + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/grp_rename/compact Dataset {6/6} + Location: 1:47400 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/grp_rename/compound Dataset {2/2} + Location: 1:47503 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: struct { + "str1" +0 20-byte null-terminated ASCII string + "str2" +20 20-byte null-terminated ASCII string + } 40 bytes +/grp_rename/compressed Dataset {6/6} + Location: 1:47716 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Chunks: {2} 8 bytes + Storage: <details removed for portability> + Filter-0: deflate-1 OPT {1} + Type: 32-bit little-endian integer +/grp_rename/grp_dsets Group + Location: 1:55269 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX +/grp_rename/grp_dsets/chunk Dataset {6/6} + Location: 1:56239 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Chunks: {2} 8 bytes + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/grp_rename/grp_dsets/compact Dataset {6/6} + Location: 1:55592 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/grp_rename/grp_dsets/compound Dataset {2/2} + Location: 1:55695 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: struct { + "str1" +0 20-byte null-terminated ASCII string + "str2" +20 20-byte null-terminated ASCII string + } 40 bytes +/grp_rename/grp_dsets/compressed Dataset {6/6} + Location: 1:55908 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Chunks: {2} 8 bytes + Storage: <details removed for portability> + Filter-0: deflate-1 OPT {1} + Type: 32-bit little-endian integer +/grp_rename/grp_dsets/named_vl Dataset {2/2} + Location: 1:56078 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: shared-1:56018 variable length of + 32-bit little-endian integer +/grp_rename/grp_dsets/nested_vl Dataset {2/2} + Location: 1:56333 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: variable length of + variable length of + 32-bit little-endian integer +/grp_rename/grp_dsets/simple Dataset {6/6} + Location: 1:55499 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/grp_rename/grp_dsets/vl Type + Location: 1:56018 + Links: 2 + Modified: XXXX-XX-XX XX:XX:XX XXX + Type: shared-1:56018 variable length of + 32-bit little-endian integer +/grp_rename/named_vl Dataset {2/2} + Location: 1:47886 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: shared-1:47826 variable length of + 32-bit little-endian integer +/grp_rename/nested_vl Dataset {2/2} + Location: 1:48141 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: variable length of + variable length of + 32-bit little-endian integer +/grp_rename/simple Dataset {6/6} + Location: 1:47307 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/grp_rename/vl Type + Location: 1:47826 + Links: 2 + Modified: XXXX-XX-XX XX:XX:XX XXX + Type: shared-1:47826 variable length of + 32-bit little-endian integer +/named_vl Dataset {2/2} + Location: 1:8657 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: shared-1:8606 variable length of + 32-bit little-endian integer +/nested_vl Dataset {2/2} + Location: 1:22942 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: variable length of + variable length of + 32-bit little-endian integer +/rename Dataset {2/2} + Location: 1:27240 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: struct { + "str1" +0 20-byte null-terminated ASCII string + "str2" +20 20-byte null-terminated ASCII string + } 40 bytes +/simple Dataset {6/6} + Location: 1:800 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer +/simple_top Dataset {6/6} + Location: 1:25099 + Links: 1 + Modified: XXXX-XX-XX XX:XX:XX XXX + Storage: <details removed for portability> + Type: 32-bit little-endian integer diff --git a/tools/h5dump/CMakeTests.cmake b/tools/h5dump/CMakeTests.cmake index c256e11..9f7e2b0 100644 --- a/tools/h5dump/CMakeTests.cmake +++ b/tools/h5dump/CMakeTests.cmake @@ -103,6 +103,12 @@ ${HDF5_TOOLS_SRC_DIR}/testfiles/tindicessub3.ddl ${HDF5_TOOLS_SRC_DIR}/testfiles/tindicessub4.ddl ${HDF5_TOOLS_SRC_DIR}/testfiles/tindicesyes.ddl + ${HDF5_TOOLS_SRC_DIR}/testfiles/tints4dims.ddl + ${HDF5_TOOLS_SRC_DIR}/testfiles/tints4dimsBlock2.ddl + ${HDF5_TOOLS_SRC_DIR}/testfiles/tints4dimsBlockEq.ddl + ${HDF5_TOOLS_SRC_DIR}/testfiles/tints4dimsCount2.ddl + ${HDF5_TOOLS_SRC_DIR}/testfiles/tints4dimsCountEq.ddl + ${HDF5_TOOLS_SRC_DIR}/testfiles/tints4dimsStride2.ddl ${HDF5_TOOLS_SRC_DIR}/testfiles/tintsattrs.ddl ${HDF5_TOOLS_SRC_DIR}/testfiles/tlarge_objname.ddl #${HDF5_TOOLS_SRC_DIR}/testfiles/tldouble.ddl @@ -244,6 +250,7 @@ ${HDF5_TOOLS_SRC_DIR}/testfiles/tgrp_comments.h5 ${HDF5_TOOLS_SRC_DIR}/testfiles/thlink.h5 ${HDF5_TOOLS_SRC_DIR}/testfiles/thyperslab.h5 + ${HDF5_TOOLS_SRC_DIR}/testfiles/tints4dims.h5 ${HDF5_TOOLS_SRC_DIR}/testfiles/tintsattrs.h5 ${HDF5_TOOLS_SRC_DIR}/testfiles/tlarge_objname.h5 #${HDF5_TOOLS_SRC_DIR}/testfiles/tldouble.h5 @@ -915,6 +922,18 @@ texceedsubblock.out.err tindicesyes.out tindicesyes.out.err + tints4dims.out + tints4dims.out.err + tints4dimsBlock2.out + tints4dimsBlock2.out.err + tints4dimsBlockEq.out + tints4dimsBlockEq.out.err + tints4dimsCount2.out + tints4dimsCount2.out.err + tints4dimsCountEq.out + tints4dimsCountEq.out.err + tints4dimsStride2.out + tints4dimsStride2.out.err tintsattrs.out tintsattrs.out.err tlarge_objname.out @@ -1236,6 +1255,12 @@ ADD_H5_TEST (tdset-3s 0 --enable-error-stack -d "/dset1[1,1;;;]" tdset.h5) ADD_H5_TEST (tno-subset 0 --enable-error-stack --no-compact-subset -d "AHFINDERDIRECT::ah_centroid_t[0] it=0 tl=0" tno-subset.h5) + ADD_H5_TEST (tints4dimsCount2 0 --enable-error-stack -d FourDimInts -s 0,0,0,0 -c 2,2,2,2 tints4dims.h5) + ADD_H5_TEST (tints4dimsBlock2 0 --enable-error-stack -d FourDimInts -s 0,0,0,0 -c 1,1,1,1 -k 2,2,2,2 tints4dims.h5) + ADD_H5_TEST (tints4dimsStride2 0 --enable-error-stack -d FourDimInts -s 0,0,0,0 -S 2,2,2,2 -c 2,2,2,2 tints4dims.h5) + ADD_H5_TEST (tints4dimsCountEq 0 --enable-error-stack -d FourDimInts -s 0,0,0,0 -S 2,2,1,1 -k 1,2,1,1 -c 2,2,4,4 tints4dims.h5) + ADD_H5_TEST (tints4dimsBlockEq 0 --enable-error-stack -d FourDimInts -s 0,0,0,0 -S 2,2,1,1 -c 2,2,1,1 -k 1,2,4,4 tints4dims.h5) + # test printing characters in ASCII instead of decimal ADD_H5_TEST (tchar1 0 --enable-error-stack -r tchar.h5) diff --git a/tools/h5dump/CMakeTestsVDS.cmake b/tools/h5dump/CMakeTestsVDS.cmake index 58287fa..cc68896 100644 --- a/tools/h5dump/CMakeTestsVDS.cmake +++ b/tools/h5dump/CMakeTestsVDS.cmake @@ -22,6 +22,11 @@ tvds_layout-3_2.ddl tvds_layout-4.ddl tvds_layout-5.ddl + vds-first.ddl + vds-gap1.ddl + vds-gap2.ddl + vds_layout-eiger.ddl + vds_layout-maxmin.ddl ) set (HDF5_REFERENCE_TEST_VDS 1_a.h5 @@ -47,6 +52,14 @@ 5_b.h5 5_c.h5 5_vds.h5 + a.h5 + b.h5 + c.h5 + d.h5 + vds-percival-unlim-maxmin.h5 + f-0.h5 + f-3.h5 + vds-eiger.h5 ) set (HDF5_ERROR_REFERENCE_VDS ) @@ -184,6 +197,12 @@ tvds-4.out.err tvds-5.out tvds-5.out.err + vds-first.out + vds-first.out.err + vds-gap1.out + vds-gap1.out.err + vds-gap2.out + vds-gap2.out.err tvds_layout-1.out tvds_layout-1.out.err tvds_layout-2.out @@ -196,6 +215,10 @@ tvds_layout-4.out.err tvds_layout-5.out tvds_layout-5.out.err + vds_layout-eiger.out + vds_layout-eiger.out.err + vds_layout-maxmin.out + vds_layout-maxmin.out.err ) set_tests_properties (H5DUMP_VDS-clearall-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/vds") if (NOT "${last_vds_test}" STREQUAL "") @@ -225,6 +248,9 @@ ADD_H5_VDS_TEST (tvds-3_2 0 --enable-error-stack 3_2_vds.h5) ADD_H5_VDS_TEST (tvds-4 0 --enable-error-stack 4_vds.h5) ADD_H5_VDS_TEST (tvds-5 0 --enable-error-stack 5_vds.h5) + ADD_H5_VDS_TEST (vds-first 0 --vds-view-first-missing --enable-error-stack vds-percival-unlim-maxmin.h5) + ADD_H5_VDS_TEST (vds-gap1 0 -d /VDS-Eiger --vds-gap-size=1 --enable-error-stack vds-eiger.h5) + ADD_H5_VDS_TEST (vds-gap2 0 --vds-gap-size=2 --enable-error-stack vds-eiger.h5) endif (USE_FILTER_DEFLATE) # Layout read @@ -235,4 +261,6 @@ ADD_H5_VDS_LAYOUT (tvds_layout-3_2 0 --enable-error-stack 3_2_vds.h5) ADD_H5_VDS_LAYOUT (tvds_layout-4 0 --enable-error-stack 4_vds.h5) ADD_H5_VDS_LAYOUT (tvds_layout-5 0 --enable-error-stack 5_vds.h5) + ADD_H5_VDS_LAYOUT (vds_layout-eiger 0 --enable-error-stack vds-eiger.h5) + ADD_H5_VDS_LAYOUT (vds_layout-maxmin 0 --enable-error-stack vds-percival-unlim-maxmin.h5) endif (USE_FILTER_DEFLATE) diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c index ffba581..553db93 100644 --- a/tools/h5dump/h5dump.c +++ b/tools/h5dump/h5dump.c @@ -71,7 +71,7 @@ struct handler_t { */ /* The following initialization makes use of C language cancatenating */ /* "xxx" "yyy" into "xxxyyy". */ -static const char *s_opts = "hn*peyBHirVa:c:d:f:g:k:l:t:w:xD:uX:o*b*F:s:S:A*q:z:m:RECM:O*N:"; +static const char *s_opts = "hn*peyBHirVa:c:d:f:g:k:l:t:w:xD:uX:o*b*F:s:S:A*q:z:m:RECM:O*N:vG:"; static struct long_options l_opts[] = { { "help", no_arg, 'h' }, { "hel", no_arg, 'h' }, @@ -190,6 +190,8 @@ static struct long_options l_opts[] = { { "no-compact-subset", no_arg, 'C' }, { "ddl", optional_arg, 'O' }, { "any_path", require_arg, 'N' }, + { "vds-view-first-missing", no_arg, 'v' }, + { "vds-gap-size", require_arg, 'G' }, { NULL, 0, '\0' } }; @@ -242,7 +244,7 @@ usage(const char *prog) PRINTVALSTREAM(rawoutstream, " -o F, --output=F Output raw data into file F\n"); PRINTVALSTREAM(rawoutstream, " -b B, --binary=B Binary file output, of form B\n"); PRINTVALSTREAM(rawoutstream, " -O F, --ddl=F Output ddl text into file F\n"); - PRINTVALSTREAM(rawoutstream, " Do not use filename F to suppress ddl display\n"); + PRINTVALSTREAM(rawoutstream, " Use blank(empty) filename F to suppress ddl display\n"); PRINTVALSTREAM(rawoutstream, "--------------- Object Options ---------------\n"); PRINTVALSTREAM(rawoutstream, " -a P, --attribute=P Print the specified attribute\n"); PRINTVALSTREAM(rawoutstream, " If an attribute name contains a slash (/), escape the\n"); @@ -256,6 +258,8 @@ usage(const char *prog) PRINTVALSTREAM(rawoutstream, " P can be the absolute path or just a relative path.\n"); PRINTVALSTREAM(rawoutstream, " -A, --onlyattr Print the header and value of attributes\n"); PRINTVALSTREAM(rawoutstream, " Optional value 0 suppresses printing attributes.\n"); + PRINTVALSTREAM(rawoutstream, " --vds-view-first-missing Set the VDS bounds to first missing mapped elements.\n"); + PRINTVALSTREAM(rawoutstream, " --vds-gap-size=N Set the missing file gap size, N=non-negative integers\n"); PRINTVALSTREAM(rawoutstream, "--------------- Object Property Options ---------------\n"); PRINTVALSTREAM(rawoutstream, " -i, --object-ids Print the object ids\n"); PRINTVALSTREAM(rawoutstream, " -p, --properties Print dataset filters, storage layout and fill value\n"); @@ -1121,6 +1125,16 @@ parse_start: } display_packed_bits = TRUE; break; + case 'v': + display_vds_first = TRUE; + break; + case 'G': + vds_gap_size = HDatoi(opt_arg); + if (vds_gap_size < 0) { + usage(h5tools_getprogname()); + goto error; + } + break; /** begin XML parameters **/ case 'x': diff --git a/tools/h5dump/h5dump.h b/tools/h5dump/h5dump.h index 2b1fb04..7cf4efd 100644 --- a/tools/h5dump/h5dump.h +++ b/tools/h5dump/h5dump.h @@ -78,6 +78,8 @@ int enable_error_stack= FALSE; /* re-enable error stack */ int disable_compact_subset= FALSE; /* disable compact form of subset notation */ int display_packed_bits = FALSE; /*print 1-8 byte numbers as packed bits*/ int include_attrs = TRUE; /* Display attributes */ +int display_vds_first = FALSE; /* vds display to all by default*/ +int vds_gap_size = 0; /* vds skip missing files default is none */ /* sort parameters */ H5_index_t sort_by = H5_INDEX_NAME; /*sort_by [creation_order | name] */ diff --git a/tools/h5dump/h5dump_ddl.c b/tools/h5dump/h5dump_ddl.c index fd50710..09751ab 100644 --- a/tools/h5dump/h5dump_ddl.c +++ b/tools/h5dump/h5dump_ddl.c @@ -26,12 +26,12 @@ typedef struct { hid_t fid; /* File ID being traversed */ - char *op_name; /* Object name wanted */ + char *op_name; /* Object name wanted */ } trav_handle_udata_t; typedef struct { - char *path; /* Path of object being searched */ - char *op_name; /* Object name wanted */ + char *path; /* Path of object being searched */ + char *op_name; /* Object name wanted */ } trav_attr_udata_t; /* callback function used by H5Literate() */ @@ -90,7 +90,7 @@ dump_dataspace(hid_t space) HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent/COL; ctx.cur_column = dump_indent; - + h5tools_dump_dataspace(rawoutstream, outputformat, &ctx, space); } @@ -117,19 +117,19 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED * h5tools_context_t ctx; /* print context */ h5tool_format_t *outputformat = &h5tools_dataformat; h5tool_format_t string_dataformat; - + hid_t attr_id; herr_t ret = SUCCEED; HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent/COL; ctx.cur_column = dump_indent; - + attr_id = H5Aopen(oid, attr_name, H5P_DEFAULT); oid_output = display_oid; data_output = display_data; attr_data_output = display_attr_data; - + string_dataformat = *outputformat; if (fp_format) { @@ -155,7 +155,7 @@ dump_attr_cb(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED * h5tools_setstatus(EXIT_FAILURE); ret = FAIL; } - + return ret; } @@ -185,6 +185,7 @@ static herr_t dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR_UNUSED *op_data) { hid_t obj; + hid_t dapl_id = H5P_DEFAULT; /* dataset access property list ID */ herr_t ret = SUCCEED; char *obj_path = NULL; /* Full path of object */ h5tools_str_t buffer; /* string into which to render */ @@ -199,7 +200,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent/COL; ctx.cur_column = dump_indent; - + string_dataformat = *outputformat; if (fp_format) { @@ -222,8 +223,8 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR if(!obj_path) { ret = FAIL; goto done; - } - + } + HDstrcpy(obj_path, prefix); HDstrcat(obj_path, "/"); HDstrcat(obj_path, name); @@ -269,7 +270,20 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR break; case H5O_TYPE_DATASET: - if((obj = H5Dopen2(group, name, H5P_DEFAULT)) >= 0) { + if(display_data) { + if ((dapl_id = H5Pcreate(H5P_DATASET_ACCESS)) < 0) { + error_msg("error in creating default access property list ID\n"); + } + if (display_vds_first) { + if(H5Pset_virtual_view(dapl_id, H5D_VDS_FIRST_MISSING) < 0) + error_msg("error in setting access property list ID, virtual_view\n"); + } + if (vds_gap_size > 0) { + if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)vds_gap_size) < 0) + error_msg("error in setting access property list ID, virtual_printf_gap\n"); + } + } + if((obj = H5Dopen2(group, name, dapl_id)) >= 0) { if(oinfo.rc > 1 || hit_elink) { obj_t *found_obj; /* Found object */ @@ -308,9 +322,11 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR h5tools_setstatus(EXIT_FAILURE); ret = FAIL; + if (dapl_id != H5P_DEFAULT) + H5Pclose(dapl_id); H5Dclose(obj); goto done; - } + } else if(found_obj->displayed) { ctx.need_prefix = TRUE; h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); @@ -347,18 +363,24 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datasetend); h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); + if (dapl_id != H5P_DEFAULT) + H5Pclose(dapl_id); H5Dclose(obj); goto done; - } + } else { found_obj->displayed = TRUE; } } /* end if */ dump_function_table->dump_dataset_function(obj, name, NULL); + if (dapl_id != H5P_DEFAULT) + H5Pclose(dapl_id); H5Dclose(obj); - } + } else { + if (dapl_id) + H5Pclose(dapl_id && dapl_id != H5P_DEFAULT); error_msg("unable to dump dataset \"%s\"\n", name); h5tools_setstatus(EXIT_FAILURE); ret = FAIL; @@ -370,7 +392,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR error_msg("unable to dump datatype \"%s\"\n", name); h5tools_setstatus(EXIT_FAILURE); ret = FAIL; - } + } else { dump_function_table->dump_named_datatype_function(obj, name); H5Tclose(obj); @@ -408,7 +430,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR error_msg("unable to get link value\n"); h5tools_setstatus(EXIT_FAILURE); ret = FAIL; - } + } else { /* print the value of a soft link */ /* Standard DDL: no modification */ @@ -558,7 +580,7 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR done: h5tools_str_close(&buffer); - + if(obj_path) HDfree(obj_path); return ret; @@ -650,7 +672,7 @@ dump_named_datatype(hid_t tid, const char *name) HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent/COL; ctx.cur_column = dump_indent; - + string_dataformat = *outputformat; if (fp_format) { @@ -685,7 +707,7 @@ dump_named_datatype(hid_t tid, const char *name) } ctx.need_prefix = TRUE; - + /* Render the element */ h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s \"%s\" %s", @@ -718,7 +740,7 @@ dump_named_datatype(hid_t tid, const char *name) else found_obj->displayed = TRUE; } /* end if */ - + /* Render the element */ h5tools_str_reset(&buffer); h5tools_print_datatype(rawoutstream, &buffer, outputformat, &ctx, tid, FALSE); @@ -726,7 +748,7 @@ dump_named_datatype(hid_t tid, const char *name) if(H5Tget_class(tid) != H5T_COMPOUND) { h5tools_str_append(&buffer, ";"); } - + h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); /* print attributes */ @@ -813,7 +835,7 @@ dump_group(hid_t gid, const char *name) HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent/COL; ctx.cur_column = dump_indent; - + string_dataformat = *outputformat; if (fp_format) { @@ -839,7 +861,7 @@ dump_group(hid_t gid, const char *name) h5tools_dump_header_format->groupbegin, name, h5tools_dump_header_format->groupblockbegin); h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); - + ctx.indent_level++; dump_indent += COL; @@ -948,7 +970,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) HDmemset(&ctx, 0, sizeof(ctx)); ctx.indent_level = dump_indent/COL; ctx.cur_column = dump_indent; - + string_dataformat = *outputformat; if (fp_format) { @@ -982,7 +1004,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) ctx.need_prefix = TRUE; h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); - + /* Render the element */ h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s \"%s\" %s", @@ -994,7 +1016,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) dump_indent += COL; ctx.indent_level++; - + type = H5Dget_type(did); h5dump_type_table = type_table; h5tools_dump_datatype(rawoutstream, outputformat, &ctx, type); @@ -1018,6 +1040,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) if(display_data) { int data_loop = 1; int i; + if(display_packed_bits) data_loop = packed_bits_num; for(i=0; i<data_loop; i++) { @@ -1042,7 +1065,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "DATA{ not yet implemented.}"); h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); - + ctx.indent_level--; break; @@ -1079,7 +1102,7 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) ctx.need_prefix = TRUE; h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); - + /* Render the element */ h5tools_str_reset(&buffer); if(HDstrlen(h5tools_dump_header_format->datasetblockend)) { @@ -1189,7 +1212,7 @@ dump_fcpl(hid_t fid) fdriver=H5Pget_driver(fapl); H5Pclose(fapl); #endif - + /*------------------------------------------------------------------------- * SUPER_BLOCK *------------------------------------------------------------------------- @@ -1308,54 +1331,54 @@ static herr_t attr_search(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *ainfo, void *_op_data) { herr_t ret = SUCCEED; - int i; - int j; - int k; - char *obj_op_name; + int i; + int j; + int k; + char *obj_op_name; char *obj_name; - trav_attr_udata_t *attr_data = (trav_attr_udata_t*)_op_data; + trav_attr_udata_t *attr_data = (trav_attr_udata_t*)_op_data; char *buf = attr_data->path; - char *op_name = attr_data->op_name; + char *op_name = attr_data->op_name; j = (int)HDstrlen(op_name) - 1; /* find the last / */ while(j >= 0) { - if (op_name[j] == '/' && (j==0 || (j>0 && op_name[j-1]!='\\'))) - break; - j--; + if (op_name[j] == '/' && (j==0 || (j>0 && op_name[j-1]!='\\'))) + break; + j--; } obj_op_name = h5tools_str_replace(op_name + j + 1, "\\/", "/"); if(obj_op_name == NULL) { - h5tools_setstatus(EXIT_FAILURE); - ret = FAIL; + h5tools_setstatus(EXIT_FAILURE); + ret = FAIL; } else { - if(HDstrcmp(attr_name, obj_op_name)==0) { - /* object name */ - i = (int)HDstrlen(buf); - j = (int)HDstrlen(op_name); - k = (size_t)i + 1 + (size_t)j + 1 + 2; - obj_name = (char *)HDmalloc((size_t)k); - if(obj_name == NULL) { - h5tools_setstatus(EXIT_FAILURE); - ret = FAIL; - } - else { - HDmemset(obj_name, '\0', (size_t)k); - if(op_name[0] != '/') { - HDstrncat(obj_name, buf, (size_t)i + 1); - if(buf[i-1] != '/') - HDstrncat(obj_name, "/", (size_t)2); - } - HDstrncat(obj_name, op_name, (size_t)j + 1); - - handle_attributes(oid, obj_name, NULL, 0, NULL); - HDfree(obj_name); - } - } - HDfree(obj_op_name); + if(HDstrcmp(attr_name, obj_op_name)==0) { + /* object name */ + i = (int)HDstrlen(buf); + j = (int)HDstrlen(op_name); + k = (size_t)i + 1 + (size_t)j + 1 + 2; + obj_name = (char *)HDmalloc((size_t)k); + if(obj_name == NULL) { + h5tools_setstatus(EXIT_FAILURE); + ret = FAIL; + } + else { + HDmemset(obj_name, '\0', (size_t)k); + if(op_name[0] != '/') { + HDstrncat(obj_name, buf, (size_t)i + 1); + if(buf[i-1] != '/') + HDstrncat(obj_name, "/", (size_t)2); + } + HDstrncat(obj_name, op_name, (size_t)j + 1); + + handle_attributes(oid, obj_name, NULL, 0, NULL); + HDfree(obj_name); + } + } + HDfree(obj_op_name); } return ret; } /* end attr_search() */ @@ -1363,7 +1386,7 @@ attr_search(hid_t oid, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED *a static herr_t obj_search(const char *path, const H5O_info_t *oi, const char H5_ATTR_UNUSED *already_visited, void *_op_data) { - trav_handle_udata_t *handle_data = (trav_handle_udata_t*)_op_data; + trav_handle_udata_t *handle_data = (trav_handle_udata_t*)_op_data; char *op_name = (char*)handle_data->op_name; trav_attr_udata_t attr_data; @@ -1372,22 +1395,22 @@ obj_search(const char *path, const H5O_info_t *oi, const char H5_ATTR_UNUSED *al H5Aiterate_by_name(handle_data->fid, path, H5_INDEX_NAME, H5_ITER_INC, NULL, attr_search, (void*)&attr_data, H5P_DEFAULT); if(HDstrcmp(path, op_name)==0) { - switch(oi->type) { - case H5O_TYPE_GROUP: - handle_groups(handle_data->fid, path, NULL, 0, NULL); - break; - case H5O_TYPE_DATASET: - handle_datasets(handle_data->fid, path, NULL, 0, NULL); - break; - case H5O_TYPE_NAMED_DATATYPE: - handle_datatypes(handle_data->fid, path, NULL, 0, NULL); - break; - case H5O_TYPE_UNKNOWN: - case H5O_TYPE_NTYPES: - default: - error_msg("unknown object type value\n"); - h5tools_setstatus(EXIT_FAILURE); - } /* end switch */ + switch(oi->type) { + case H5O_TYPE_GROUP: + handle_groups(handle_data->fid, path, NULL, 0, NULL); + break; + case H5O_TYPE_DATASET: + handle_datasets(handle_data->fid, path, NULL, 0, NULL); + break; + case H5O_TYPE_NAMED_DATATYPE: + handle_datatypes(handle_data->fid, path, NULL, 0, NULL); + break; + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: + error_msg("unknown object type value\n"); + h5tools_setstatus(EXIT_FAILURE); + } /* end switch */ } return 0; @@ -1397,48 +1420,48 @@ static herr_t lnk_search(const char *path, const H5L_info_t *li, void *_op_data) { int search_len; - int k; + int k; char *search_name; - trav_handle_udata_t *handle_data = (trav_handle_udata_t*)_op_data; + trav_handle_udata_t *handle_data = (trav_handle_udata_t*)_op_data; char *op_name = (char*)handle_data->op_name; search_len = HDstrlen(op_name); if(search_len > 0 && op_name[0] != '/') { - k = 2; + k = 2; } else k = 1; - search_name = (char *)HDmalloc((size_t)(search_len + k)); + search_name = (char *)HDmalloc((size_t)(search_len + k)); if(search_name == NULL) { - error_msg("creating temporary link\n"); - h5tools_setstatus(EXIT_FAILURE); + error_msg("creating temporary link\n"); + h5tools_setstatus(EXIT_FAILURE); } else { - if (k == 2) { - HDstrcpy(search_name, "/"); - HDstrncat(search_name, op_name, (size_t)search_len + 1); - } - else - HDstrncpy(search_name, op_name, (size_t)search_len + 1); - search_name[search_len + k - 1] = '\0'; - - if(HDstrcmp(path, search_name) == 0) { - switch(li->type) { - case H5L_TYPE_SOFT: - case H5L_TYPE_EXTERNAL: - handle_links(handle_data->fid, op_name, NULL, 0, NULL); - break; - - case H5L_TYPE_HARD: - case H5L_TYPE_MAX: - case H5L_TYPE_ERROR: - default: - error_msg("unknown link type value\n"); - h5tools_setstatus(EXIT_FAILURE); - break; - } /* end switch() */ - } - HDfree(search_name); + if (k == 2) { + HDstrcpy(search_name, "/"); + HDstrncat(search_name, op_name, (size_t)search_len + 1); + } + else + HDstrncpy(search_name, op_name, (size_t)search_len + 1); + search_name[search_len + k - 1] = '\0'; + + if(HDstrcmp(path, search_name) == 0) { + switch(li->type) { + case H5L_TYPE_SOFT: + case H5L_TYPE_EXTERNAL: + handle_links(handle_data->fid, op_name, NULL, 0, NULL); + break; + + case H5L_TYPE_HARD: + case H5L_TYPE_MAX: + case H5L_TYPE_ERROR: + default: + error_msg("unknown link type value\n"); + h5tools_setstatus(EXIT_FAILURE); + break; + } /* end switch() */ + } + HDfree(search_name); } return 0; } /* end lnk_search() */ @@ -1465,7 +1488,7 @@ handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H hid_t gcpl_id; unsigned crt_order_flags; unsigned attr_crt_order_flags; - trav_handle_udata_t handle_udata; /* User data for traversal */ + trav_handle_udata_t handle_udata; /* User data for traversal */ if ((gcpl_id = H5Gget_create_plist(gid)) < 0) { error_msg("error in getting group creation property list ID\n"); @@ -1489,12 +1512,12 @@ handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H h5tools_setstatus(EXIT_FAILURE); } - handle_udata.fid = fid; - handle_udata.op_name = (char*)path_name; - if(h5trav_visit(fid, "/", TRUE, TRUE, obj_search, lnk_search, &handle_udata) < 0) { - error_msg("error traversing information\n"); - h5tools_setstatus(EXIT_FAILURE); - } + handle_udata.fid = fid; + handle_udata.op_name = (char*)path_name; + if(h5trav_visit(fid, "/", TRUE, TRUE, obj_search, lnk_search, &handle_udata) < 0) { + error_msg("error traversing information\n"); + h5tools_setstatus(EXIT_FAILURE); + } } } @@ -1536,7 +1559,7 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H /* find the last / */ while(j >= 0) { - if (attr[j] == '/' && (j==0 || (j>0 && attr[j-1]!='\\'))) + if (attr[j] == '/' && (j==0 || (j>0 && attr[j-1]!='\\'))) break; j--; } @@ -1571,7 +1594,7 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H string_dataformat.do_escape = display_escape; outputformat = &string_dataformat; - attr_name = h5tools_str_replace(attr + j + 1, "\\/", "/"); + attr_name = h5tools_str_replace(attr + j + 1, "\\/", "/"); /* handle error case: cannot open the object with the attribute */ if((oid = H5Oopen(fid, obj_name, H5P_DEFAULT)) < 0) { @@ -1627,7 +1650,7 @@ handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H } /* end if */ HDfree(obj_name); - HDfree(attr_name); + HDfree(attr_name); dump_indent -= COL; return; @@ -1635,9 +1658,9 @@ error: h5tools_setstatus(EXIT_FAILURE); if(obj_name) HDfree(obj_name); - - if (attr_name) - HDfree(attr_name); + + if (attr_name) + HDfree(attr_name); H5E_BEGIN_TRY { H5Oclose(oid); @@ -1672,10 +1695,24 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis { H5O_info_t oinfo; hid_t dsetid; + hid_t dapl_id = H5P_DEFAULT; /* dataset access property list ID */ struct subset_t *sset = (struct subset_t *)data; const char *real_name = display_name ? display_name : dset; - if((dsetid = H5Dopen2(fid, dset, H5P_DEFAULT)) < 0) { + if(display_data) { + if ((dapl_id = H5Pcreate(H5P_DATASET_ACCESS)) < 0) { + error_msg("error in creating default access property list ID\n"); + } + if (display_vds_first) { + if(H5Pset_virtual_view(dapl_id, H5D_VDS_FIRST_MISSING) < 0) + error_msg("error in setting access property list ID, virtual_view\n"); + } + if (vds_gap_size > 0) { + if(H5Pset_virtual_printf_gap(dapl_id, (hsize_t)vds_gap_size) < 0) + error_msg("error in setting access property list ID, virtual_printf_gap\n"); + } + } + if((dsetid = H5Dopen2(fid, dset, dapl_id)) < 0) { if (pe) { handle_links(fid, dset, data, pe, display_name); } @@ -1752,7 +1789,7 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis h5tools_setstatus(EXIT_FAILURE); return; } - + /*------------------------------------------------------------------------- * check for block overlap *------------------------------------------------------------------------- @@ -1785,7 +1822,7 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis PRINTSTREAM(rawoutstream, "%s \"%s\"\n", HARDLINK, found_obj->objname); indentation(dump_indent); end_obj(h5tools_dump_header_format->datasetend, h5tools_dump_header_format->datasetblockend); - } + } else { found_obj->displayed = TRUE; dump_indent += COL; @@ -1801,7 +1838,8 @@ handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *dis dump_dataset(dsetid, real_name, sset); dump_indent -= COL; } - + if (dapl_id != H5P_DEFAULT) + H5Pclose(dapl_id); if(H5Dclose(dsetid) < 0) h5tools_setstatus(EXIT_FAILURE); } @@ -1884,11 +1922,11 @@ handle_links(hid_t fid, const char *links, void H5_ATTR_UNUSED * data, int H5_AT if(H5Lget_info(fid, links, &linfo, H5P_DEFAULT) < 0) { error_msg("unable to get link info from \"%s\"\n", links); h5tools_setstatus(EXIT_FAILURE); - } + } else if(linfo.type == H5L_TYPE_HARD) { error_msg("\"%s\" is a hard link\n", links); h5tools_setstatus(EXIT_FAILURE); - } + } else { char *buf = (char *)HDmalloc(linfo.u.val_size); PRINTVALSTREAM(rawoutstream, "\n"); @@ -1925,12 +1963,12 @@ handle_links(hid_t fid, const char *links, void H5_ATTR_UNUSED * data, int H5_AT PRINTSTREAM(rawoutstream, "TARGETFILE \"%s\"\n", elink_file); indentation(COL); PRINTSTREAM(rawoutstream, "TARGETPATH \"%s\"\n", elink_path); - } + } else { error_msg("h5dump error: unable to unpack external link value for \"%s\"\n", links); h5tools_setstatus(EXIT_FAILURE); } - } + } else { error_msg("h5dump error: unable to get external link value for \"%s\"\n", links); h5tools_setstatus(EXIT_FAILURE); diff --git a/tools/h5dump/h5dump_extern.h b/tools/h5dump/h5dump_extern.h index 08f9e36..62477d0 100644 --- a/tools/h5dump/h5dump_extern.h +++ b/tools/h5dump/h5dump_extern.h @@ -77,6 +77,8 @@ extern int enable_error_stack; /* re-enable error stack */ extern int disable_compact_subset; /* disable compact form of subset notation */ extern int display_packed_bits; /*print 1-8 byte numbers as packed bits*/ extern int include_attrs; /* Display attributes */ +extern int display_vds_first; /* vds display to first missing */ +extern int vds_gap_size; /* vds skip missing files */ /* sort parameters */ extern H5_index_t sort_by; /*sort_by [creation_order | name] */ diff --git a/tools/h5dump/h5dumpgentest.c b/tools/h5dump/h5dumpgentest.c index 80051d4..668e3f7 100644 --- a/tools/h5dump/h5dumpgentest.c +++ b/tools/h5dump/h5dumpgentest.c @@ -110,6 +110,7 @@ #define FILE78 "tscalarintattrsize.h5" #define FILE79 "tintsattrs.h5" #define FILE80 "tbitnopaque.h5" +#define FILE81 "tints4dims.h5" /*------------------------------------------------------------------------- * prototypes @@ -271,20 +272,20 @@ typedef struct s1_t { #define THRESHOLD10 10 /* Free space section threshold */ /* "FILE66" macros and for FILE69 */ -#define F66_XDIM 8 +#define F66_XDIM 8 #define F66_DATASETU08 "DU08BITS" #define F66_DATASETS08 "DS08BITS" -#define F66_YDIM8 8 +#define F66_YDIM8 8 #define F66_DATASETU16 "DU16BITS" #define F66_DATASETS16 "DS16BITS" -#define F66_YDIM16 16 +#define F66_YDIM16 16 #define F66_DATASETU32 "DU32BITS" #define F66_DATASETS32 "DS32BITS" -#define F66_YDIM32 32 +#define F66_YDIM32 32 #define F66_DATASETU64 "DU64BITS" #define F66_DATASETS64 "DS64BITS" #define F66_YDIM64 64 -#define F66_DUMMYDBL "DummyDBL" +#define F66_DUMMYDBL "DummyDBL" /* "FILE70" macros and for FILE71 */ /* Name of dataset to create in datafile */ @@ -352,6 +353,13 @@ typedef struct s1_t { #define F80_DIM32 32 +#define F81_DATASETNAME "FourDimInts" +#define F81_RANK 4 +#define F81_WDIM 10 +#define F81_XDIM 8 +#define F81_YDIM 6 +#define F81_ZDIM 4 + static void gent_group(void) { @@ -568,7 +576,7 @@ static void gent_softlink(void) * Function: gent_softlink2 * * Purpose: Create soft links to various objects. - * Return: + * Return: * SUCCEED * FAIL * Programmer: Jonathan Kim @@ -582,7 +590,7 @@ static int gent_softlink2(void) hid_t gid1 = -1, gid2 = -1; hid_t datatype = -1; hid_t dset1 = -1, dset2 = -1; - hid_t dataspace = -1; + hid_t dataspace = -1; hsize_t dimsf[2]; /* dataset dimensions */ int data1[NX][NY] = {{0,0},{1,1},{2,2},{3,3}}; int data2[NX][NY] = {{0,0},{0,1},{0,2},{3,3}}; @@ -626,7 +634,7 @@ static int gent_softlink2(void) status = H5Tcommit2(fileid1, "dtype", datatype, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (status < 0) { - fprintf(stderr, "Error: %s> H5Tcommit2 failed.\n", FILE4_1); + fprintf(stderr, "Error: %s> H5Tcommit2 failed.\n", FILE4_1); status = FAIL; goto out; } @@ -2896,9 +2904,9 @@ static void gent_vldatatypes5(void) } /* This is big enough to make h5dump to use hyperslap to read - from file and display portion by portion. This also prints out array indices + from file and display portion by portion. This also prints out array indices via region reference for testing refion reference output. - Note: this was added originally prepared for bug2092. before the fix h5dump didn't + Note: this was added originally prepared for bug2092. before the fix h5dump didn't display array indices every 262 x N (N > 0) based on 2000x1000 dims. */ #define SPACE_ARRAY1BIG_DIM 2000 @@ -2945,7 +2953,7 @@ static void gent_array1_big(void) fid1 = H5Fcreate(FILE25_BIG, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); /*------------------------- - * Array type dataset + * Array type dataset */ /* Create dataspace for datasets */ sid1 = H5Screate_simple(SPACE1_RANK, sdims1, NULL); @@ -2961,7 +2969,7 @@ static void gent_array1_big(void) HDassert(ret >= 0); /*--------------------------- - * Region Reference dataset + * Region Reference dataset */ /* Create dataspace for the reference dataset */ sid2 = H5Screate_simple(SPACE1_RANK, dims2, NULL); @@ -5210,7 +5218,7 @@ static void gent_zero_dim_size(void) space = H5Screate_simple(SPACE3_RANK, dims1, NULL); /* dataset */ - dataset = H5Dcreate2(fid, "dset of 0 dimension size", H5T_STD_I32BE, space, H5P_DEFAULT, + dataset = H5Dcreate2(fid, "dset of 0 dimension size", H5T_STD_I32BE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); /* nothing should be written */ H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, &dset_buf); @@ -7064,7 +7072,7 @@ gent_packedbits(void) space = H5Screate_simple(2, dims, NULL); dataset = H5Dcreate2(fid, F66_DATASETU16, H5T_STD_U16LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - valu16bits = (uint16_t) ~0u; /* all 1s */ + valu16bits = (uint16_t) ~0u; /* all 1s */ for(i = 0; i < dims[0]; i++){ dsetu16[i][0] = valu16bits; for(j = 1; j < dims[1]; j++) @@ -7081,7 +7089,7 @@ gent_packedbits(void) space = H5Screate_simple(2, dims, NULL); dataset = H5Dcreate2(fid, F66_DATASETU32, H5T_STD_U32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - valu32bits = (uint32_t) ~0u; /* all 1s */ + valu32bits = (uint32_t) ~0u; /* all 1s */ for(i = 0; i < dims[0]; i++){ dsetu32[i][0] = valu32bits; for(j = 1; j < dims[1]; j++) @@ -7115,7 +7123,7 @@ gent_packedbits(void) space = H5Screate_simple(2, dims, NULL); dataset = H5Dcreate2(fid, F66_DATASETS08, H5T_STD_I8LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - val8bits = (int8_t) ~0; /* all 1s */ + val8bits = (int8_t) ~0; /* all 1s */ for(i = 0; i < dims[0]; i++){ dset8[i][0] = val8bits; for(j = 1; j < dims[1]; j++) @@ -7132,7 +7140,7 @@ gent_packedbits(void) space = H5Screate_simple(2, dims, NULL); dataset = H5Dcreate2(fid, F66_DATASETS16, H5T_STD_I16LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - val16bits = (int16_t) ~0; /* all 1s */ + val16bits = (int16_t) ~0; /* all 1s */ for(i = 0; i < dims[0]; i++){ dset16[i][0] = val16bits; for(j = 1; j < dims[1]; j++) @@ -7149,7 +7157,7 @@ gent_packedbits(void) space = H5Screate_simple(2, dims, NULL); dataset = H5Dcreate2(fid, F66_DATASETS32, H5T_STD_I32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - val32bits = (int32_t) ~0; /* all 1s */ + val32bits = (int32_t) ~0; /* all 1s */ for(i = 0; i < dims[0]; i++){ dset32[i][0] = val32bits; for(j = 1; j < dims[1]; j++) @@ -8638,7 +8646,7 @@ static void gent_compound_int_array(void) { valu8bits = (uint8_t) ~0u; /* all 1s */ for(n = 0; n < dims[0]; n++){ - Cmpd1[m].dsetu8[n] = valu8bits; + Cmpd1[m].dsetu8[n] = valu8bits; valu8bits <<= 1; } @@ -8647,7 +8655,7 @@ static void gent_compound_int_array(void) { valu16bits = (uint16_t) ~0u; /* all 1s */ for(n = 0; n < dims[0]; n++){ - Cmpd1[m].dsetu16[n] = valu16bits; + Cmpd1[m].dsetu16[n] = valu16bits; valu16bits <<= 1; } @@ -8656,7 +8664,7 @@ static void gent_compound_int_array(void) { valu32bits = (uint32_t) ~0u; /* all 1s */ for(n = 0; n < dims[0]; n++){ - Cmpd1[m].dsetu32[n] = valu32bits; + Cmpd1[m].dsetu32[n] = valu32bits; valu32bits <<= 1; } @@ -8665,7 +8673,7 @@ static void gent_compound_int_array(void) { valu64bits = (uint64_t) ~0Lu; /* all 1s */ for(n = 0; n < dims[0]; n++){ - Cmpd1[m].dsetu64[n] = valu64bits; + Cmpd1[m].dsetu64[n] = valu64bits; valu64bits <<= 1; } @@ -8674,7 +8682,7 @@ static void gent_compound_int_array(void) { val8bits = (int8_t) ~0; /* all 1s */ for(n = 0; n < dims[0]; n++){ - Cmpd1[m].dset8[n] = val8bits; + Cmpd1[m].dset8[n] = val8bits; val8bits <<= 1; } @@ -8683,7 +8691,7 @@ static void gent_compound_int_array(void) { val16bits = (int16_t) ~0; /* all 1s */ for(n = 0; n < dims[0]; n++){ - Cmpd1[m].dset16[n] = val16bits; + Cmpd1[m].dset16[n] = val16bits; val16bits <<= 1; } @@ -8692,7 +8700,7 @@ static void gent_compound_int_array(void) { val32bits = (int32_t) ~0; /* all 1s */ for(n = 0; n < dims[0]; n++){ - Cmpd1[m].dset32[n] = val32bits; + Cmpd1[m].dset32[n] = val32bits; val32bits <<= 1; } @@ -8701,7 +8709,7 @@ static void gent_compound_int_array(void) { val64bits = (int64_t) ~0L; /* all 1s */ for(n = 0; n < dims[0]; n++){ - Cmpd1[m].dset64[n] = val64bits; + Cmpd1[m].dset64[n] = val64bits; val64bits <<= 1; } @@ -8709,7 +8717,7 @@ static void gent_compound_int_array(void) { dims[0] = F76_DIM8; for(n = 0; n < dims[0]; n++) - Cmpd1[m].dsetdbl[n] = 0.0001F + n; + Cmpd1[m].dsetdbl[n] = 0.0001F + n; } /* Create the array data type for the 8 bits signed int array */ @@ -8884,64 +8892,64 @@ static void gent_compound_ints(void) { for (m = 0; m < F77_LENGTH; m++) { /* Array of 8 bits unsigned int */ - if((m % F76_DIM8) == 0) - valu8bits = (uint8_t) ~0u; /* all 1s */ - Cmpd1[m].dsetu8 = valu8bits; - Cmpd2[m].dsetu8 = valu8bits; + if((m % F76_DIM8) == 0) + valu8bits = (uint8_t) ~0u; /* all 1s */ + Cmpd1[m].dsetu8 = valu8bits; + Cmpd2[m].dsetu8 = valu8bits; valu8bits <<= 1; /* Array of 16 bits unsigned int */ - if((m % F76_DIM16) == 0) + if((m % F76_DIM16) == 0) valu16bits = (uint16_t) ~0u; /* all 1s */ - Cmpd1[m].dsetu16 = valu16bits; - Cmpd2[m].dsetu16 = valu16bits; - valu16bits <<= 1; + Cmpd1[m].dsetu16 = valu16bits; + Cmpd2[m].dsetu16 = valu16bits; + valu16bits <<= 1; /* Array of 32 bits unsigned int */ - if((m % F76_DIM32) == 0) + if((m % F76_DIM32) == 0) valu32bits = (uint32_t) ~0u; /* all 1s */ - Cmpd1[m].dsetu32 = valu32bits; - Cmpd2[m].dsetu32 = valu32bits; - valu32bits <<= 1; + Cmpd1[m].dsetu32 = valu32bits; + Cmpd2[m].dsetu32 = valu32bits; + valu32bits <<= 1; /* Array of 64 bits unsigned int */ - if((m % F76_DIM64) == 0) + if((m % F76_DIM64) == 0) valu64bits = (uint64_t) ~0Lu; /* all 1s */ - Cmpd1[m].dsetu64 = valu64bits; - Cmpd2[m].dsetu64 = valu64bits; - valu64bits <<= 1; + Cmpd1[m].dsetu64 = valu64bits; + Cmpd2[m].dsetu64 = valu64bits; + valu64bits <<= 1; /* Array of 8 bits signed int */ - if((m % F76_DIM8) == 0) + if((m % F76_DIM8) == 0) val8bits = (int8_t) ~0; /* all 1s */ - Cmpd1[m].dset8 = val8bits; - Cmpd2[m].dset8 = val8bits; - val8bits <<= 1; + Cmpd1[m].dset8 = val8bits; + Cmpd2[m].dset8 = val8bits; + val8bits <<= 1; /* Array of 16 bits signed int */ - if((m % F76_DIM16) == 0) + if((m % F76_DIM16) == 0) val16bits = (int16_t) ~0; /* all 1s */ - Cmpd1[m].dset16 = val16bits; - Cmpd2[m].dset16 = val16bits; - val16bits <<= 1; + Cmpd1[m].dset16 = val16bits; + Cmpd2[m].dset16 = val16bits; + val16bits <<= 1; /* Array of 32 bits signed int */ - if((m % F76_DIM32) == 0) + if((m % F76_DIM32) == 0) val32bits = (int32_t) ~0; /* all 1s */ - Cmpd1[m].dset32 = val32bits; - Cmpd2[m].dset32 = val32bits; - val32bits <<= 1; + Cmpd1[m].dset32 = val32bits; + Cmpd2[m].dset32 = val32bits; + val32bits <<= 1; /* Array of 64 bits signed int */ - if((m % F76_DIM64) == 0) + if((m % F76_DIM64) == 0) val64bits = (int64_t) ~0L; /* all 1s */ - Cmpd1[m].dset64 = val64bits; - Cmpd2[m].dset64 = val64bits; - val64bits <<= 1; + Cmpd1[m].dset64 = val64bits; + Cmpd2[m].dset64 = val64bits; + val64bits <<= 1; /* Double Dummy set for failure tests */ - Cmpd1[m].dsetdbl = 0.0001F + m; - Cmpd2[m].dsetdbl = 0.0001F + m; + Cmpd1[m].dsetdbl = 0.0001F + m; + Cmpd2[m].dsetdbl = 0.0001F + m; } /* Create the dataspace */ @@ -9352,7 +9360,7 @@ gent_intsattrs(void) space = H5Screate_simple(2, dims, NULL); dataset = H5Dcreate2(fid, F66_DATASETU16, H5T_STD_U16LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - valu16bits = (uint16_t) ~0u; /* all 1s */ + valu16bits = (uint16_t) ~0u; /* all 1s */ for(i = 0; i < dims[0]; i++){ dsetu16[i][0] = valu16bits; asetu16[i*dims[1]] = dsetu16[i][0]; @@ -9379,7 +9387,7 @@ gent_intsattrs(void) space = H5Screate_simple(2, dims, NULL); dataset = H5Dcreate2(fid, F66_DATASETU32, H5T_STD_U32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - valu32bits = (uint32_t) ~0u; /* all 1s */ + valu32bits = (uint32_t) ~0u; /* all 1s */ for(i = 0; i < dims[0]; i++){ dsetu32[i][0] = valu32bits; asetu32[i*dims[1]] = dsetu32[i][0]; @@ -9433,7 +9441,7 @@ gent_intsattrs(void) space = H5Screate_simple(2, dims, NULL); dataset = H5Dcreate2(fid, F66_DATASETS08, H5T_STD_I8LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - val8bits = (int8_t) ~0; /* all 1s */ + val8bits = (int8_t) ~0; /* all 1s */ for(i = 0; i < dims[0]; i++){ dset8[i][0] = val8bits; aset8[i*dims[1]] = dset8[i][0]; @@ -9460,7 +9468,7 @@ gent_intsattrs(void) space = H5Screate_simple(2, dims, NULL); dataset = H5Dcreate2(fid, F66_DATASETS16, H5T_STD_I16LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - val16bits = (int16_t) ~0; /* all 1s */ + val16bits = (int16_t) ~0; /* all 1s */ for(i = 0; i < dims[0]; i++){ dset16[i][0] = val16bits; aset16[i*dims[1]] = dset16[i][0]; @@ -9487,7 +9495,7 @@ gent_intsattrs(void) space = H5Screate_simple(2, dims, NULL); dataset = H5Dcreate2(fid, F66_DATASETS32, H5T_STD_I32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - val32bits = (int32_t) ~0; /* all 1s */ + val32bits = (int32_t) ~0; /* all 1s */ for(i = 0; i < dims[0]; i++){ dset32[i][0] = val32bits; aset32[i*dims[1]] = dset32[i][0]; @@ -9710,6 +9718,41 @@ static void gent_bitnopaquefields(void) H5Fclose(file); } +/*------------------------------------------------------------------------- + * Function: gent_intsfourdims + * + * Purpose: Generate a file to be used in the h5dump subsetting tests. + * One datasets of unsigned int types are created in four dimensions 2,4,6,10. + *------------------------------------------------------------------------- + */ +static void +gent_intsfourdims(void) +{ + hid_t fid, dataset, space, tid; + hsize_t dims[F81_RANK]; + uint32_t dset1[F81_ZDIM][F81_YDIM][F81_XDIM][F81_WDIM]; + unsigned int i, j, k, l; + + fid = H5Fcreate(FILE81, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + + /* Dataset of 32 bits unsigned int */ + dims[0] = F81_ZDIM; dims[1] = F81_YDIM; dims[2] = F81_XDIM; dims[3] = F81_WDIM; + space = H5Screate_simple(F81_RANK, dims, NULL); + dataset = H5Dcreate2(fid, F81_DATASETNAME, H5T_STD_U32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + + for(i = 0; i < F81_ZDIM; i++) + for(j = 0; j < F81_YDIM; j++) + for(k = 0; k < F81_XDIM; k++) + for(l = 0; l < F81_WDIM; l++) + dset1[i][j][k][l] = i*F81_YDIM*F81_XDIM*F81_WDIM + j*F81_XDIM*F81_WDIM + k*F81_WDIM + l; + + H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset1); + H5Sclose(space); + H5Dclose(dataset); + + H5Fclose(fid); +} + /*------------------------------------------------------------------------- * Function: main @@ -9802,6 +9845,8 @@ int main(void) gent_intsattrs(); gent_bitnopaquefields(); + gent_intsfourdims(); + return 0; } diff --git a/tools/h5dump/testh5dump.sh.in b/tools/h5dump/testh5dump.sh.in index 267ac44..6d481c6 100644 --- a/tools/h5dump/testh5dump.sh.in +++ b/tools/h5dump/testh5dump.sh.in @@ -133,6 +133,7 @@ $SRC_H5DUMP_TESTFILES/tgrp_comments.h5 $SRC_H5DUMP_TESTFILES/thlink.h5 $SRC_H5DUMP_TESTFILES/thyperslab.h5 $SRC_H5DUMP_TESTFILES/tintsattrs.h5 +$SRC_H5DUMP_TESTFILES/tints4dims.h5 $SRC_H5DUMP_TESTFILES/tlarge_objname.h5 #$SRC_H5DUMP_TESTFILES/tldouble.h5 $SRC_H5DUMP_TESTFILES/tlonglinks.h5 @@ -265,6 +266,12 @@ $SRC_H5DUMP_TESTFILES/tindicessub2.ddl $SRC_H5DUMP_TESTFILES/tindicessub3.ddl $SRC_H5DUMP_TESTFILES/tindicessub4.ddl $SRC_H5DUMP_TESTFILES/tindicesyes.ddl +$SRC_H5DUMP_TESTFILES/tints4dims.ddl +$SRC_H5DUMP_TESTFILES/tints4dimsBlock2.ddl +$SRC_H5DUMP_TESTFILES/tints4dimsBlockEq.ddl +$SRC_H5DUMP_TESTFILES/tints4dimsCount2.ddl +$SRC_H5DUMP_TESTFILES/tints4dimsCountEq.ddl +$SRC_H5DUMP_TESTFILES/tints4dimsStride2.ddl $SRC_H5DUMP_TESTFILES/tintsattrs.ddl $SRC_H5DUMP_TESTFILES/tlarge_objname.ddl #$SRC_H5DUMP_TESTFILES/tldouble.ddl @@ -1106,6 +1113,12 @@ TOOLTEST tall-5s.ddl --enable-error-stack -d "/g1/g1.1/dset1.1.2[0;2;10;]" tall. TOOLTEST tdset-3s.ddl --enable-error-stack -d "/dset1[1,1;;;]" tdset.h5 TOOLTEST tno-subset.ddl --enable-error-stack --no-compact-subset -d "AHFINDERDIRECT::ah_centroid_t[0] it=0 tl=0" tno-subset.h5 +TOOLTEST tints4dimsCount2.ddl --enable-error-stack -d FourDimInts -s 0,0,0,0 -c 2,2,2,2 tints4dims.h5 +TOOLTEST tints4dimsBlock2.ddl --enable-error-stack -d FourDimInts -s 0,0,0,0 -c 1,1,1,1 -k 2,2,2,2 tints4dims.h5 +TOOLTEST tints4dimsStride2.ddl --enable-error-stack -d FourDimInts -s 0,0,0,0 -S 2,2,2,2 -c 2,2,2,2 tints4dims.h5 +TOOLTEST tints4dimsCountEq.ddl --enable-error-stack -d FourDimInts -s 0,0,0,0 -S 2,2,1,1 -k 1,2,1,1 -c 2,2,4,4 tints4dims.h5 +TOOLTEST tints4dimsBlockEq.ddl --enable-error-stack -d FourDimInts -s 0,0,0,0 -S 2,2,1,1 -c 2,2,1,1 -k 1,2,4,4 tints4dims.h5 + # test printing characters in ASCII instead of decimal TOOLTEST tchar1.ddl --enable-error-stack -r tchar.h5 diff --git a/tools/h5dump/testh5dumpvds.sh.in b/tools/h5dump/testh5dumpvds.sh.in index b15606f..850c03a 100644 --- a/tools/h5dump/testh5dumpvds.sh.in +++ b/tools/h5dump/testh5dumpvds.sh.in @@ -98,6 +98,14 @@ $SRC_H5DUMP_TESTFILES/vds/5_a.h5 $SRC_H5DUMP_TESTFILES/vds/5_b.h5 $SRC_H5DUMP_TESTFILES/vds/5_c.h5 $SRC_H5DUMP_TESTFILES/vds/5_vds.h5 +$SRC_H5DUMP_TESTFILES/vds/a.h5 +$SRC_H5DUMP_TESTFILES/vds/b.h5 +$SRC_H5DUMP_TESTFILES/vds/c.h5 +$SRC_H5DUMP_TESTFILES/vds/d.h5 +$SRC_H5DUMP_TESTFILES/vds/vds-percival-unlim-maxmin.h5 +$SRC_H5DUMP_TESTFILES/vds/f-0.h5 +$SRC_H5DUMP_TESTFILES/vds/f-3.h5 +$SRC_H5DUMP_TESTFILES/vds/vds-eiger.h5 " LIST_OTHER_TEST_FILES=" @@ -113,6 +121,11 @@ $SRC_H5DUMP_TESTFILES/vds/tvds_layout-3_1.ddl $SRC_H5DUMP_TESTFILES/vds/tvds_layout-3_2.ddl $SRC_H5DUMP_TESTFILES/vds/tvds_layout-4.ddl $SRC_H5DUMP_TESTFILES/vds/tvds_layout-5.ddl +$SRC_H5DUMP_TESTFILES/vds/vds-first.ddl +$SRC_H5DUMP_TESTFILES/vds/vds-gap1.ddl +$SRC_H5DUMP_TESTFILES/vds/vds-gap2.ddl +$SRC_H5DUMP_TESTFILES/vds/vds_layout-eiger.ddl +$SRC_H5DUMP_TESTFILES/vds/vds_layout-maxmin.ddl " LIST_ERROR_TEST_FILES=" @@ -480,6 +493,9 @@ if test $USE_FILTER_DEFLATE = "yes" ; then TOOLTEST tvds-3_2.ddl --enable-error-stack 3_2_vds.h5 TOOLTEST tvds-4.ddl --enable-error-stack 4_vds.h5 TOOLTEST tvds-5.ddl --enable-error-stack 5_vds.h5 + TOOLTEST vds-first.ddl --vds-view-first-missing --enable-error-stack vds-percival-unlim-maxmin.h5 + TOOLTEST vds-gap1.ddl -d /VDS-Eiger --vds-gap-size=1 --enable-error-stack vds-eiger.h5 + TOOLTEST vds-gap2.ddl --vds-gap-size=2 --enable-error-stack vds-eiger.h5 fi # Layout read @@ -490,6 +506,8 @@ if test $USE_FILTER_DEFLATE = "yes" ; then TOOLTEST tvds_layout-3_2.ddl -p --enable-error-stack 3_2_vds.h5 TOOLTEST tvds_layout-4.ddl -p --enable-error-stack 4_vds.h5 TOOLTEST tvds_layout-5.ddl -p --enable-error-stack 5_vds.h5 + TOOLTEST vds_layout-eiger.ddl -p --enable-error-stack vds-eiger.h5 + TOOLTEST vds_layout-maxmin.ddl -p --enable-error-stack vds-percival-unlim-maxmin.h5 fi # Clean up temporary files/directories diff --git a/tools/h5repack/CMakeLists.txt b/tools/h5repack/CMakeLists.txt index 7631ae8..d8542a4 100644 --- a/tools/h5repack/CMakeLists.txt +++ b/tools/h5repack/CMakeLists.txt @@ -56,12 +56,7 @@ if (BUILD_TESTING) add_library (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED dynlib_rpk.c) TARGET_C_PROPERTIES (${HDF5_TOOL_PLUGIN_LIB_TARGET} SHARED " " " ") target_link_libraries (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TEST_LIB_TARGET}) - H5_SET_LIB_OPTIONS ( - ${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} - SHARED - HDF5_TOOL_PLUGIN_LIB_NAME_RELEASE - HDF5_TOOL_PLUGIN_LIB_NAME_DEBUG - ) + H5_SET_LIB_OPTIONS (${HDF5_TOOL_PLUGIN_LIB_TARGET} ${HDF5_TOOL_PLUGIN_LIB_NAME} SHARED ${HDF5_PACKAGE_SOVERSION}) # make plugins dir file (MAKE_DIRECTORY "${CMAKE_BINARY_DIR}/plugins") @@ -72,13 +67,13 @@ if (BUILD_TESTING) TARGET ${HDF5_TOOL_PLUGIN_LIB_TARGET} POST_BUILD COMMAND ${CMAKE_COMMAND} - ARGS -E copy_if_different + ARGS -E copy_if_different "$<TARGET_FILE:${HDF5_TOOL_PLUGIN_LIB_TARGET}>" "${CMAKE_BINARY_DIR}/plugins/$<TARGET_FILE_NAME:${HDF5_TOOL_PLUGIN_LIB_TARGET}>" ) include (CMakeTests.cmake) - + endif (BUILD_TESTING) ############################################################################## diff --git a/tools/h5repack/h5repack.c b/tools/h5repack/h5repack.c index c1e63f1..286d7f0 100644 --- a/tools/h5repack/h5repack.c +++ b/tools/h5repack/h5repack.c @@ -77,14 +77,14 @@ int h5repack(const char* infile, const char* outfile, pack_opt_t *options) { * *------------------------------------------------------------------------- */ - -int h5repack_init(pack_opt_t *options, int verbose, +int h5repack_init(pack_opt_t *options, int verbose, hbool_t latest, H5F_file_space_type_t strategy, hsize_t threshold) { int k, n; HDmemset(options, 0, sizeof(pack_opt_t)); options->min_comp = 0; options->verbose = verbose; + options->latest = latest; options->layout_g = H5D_LAYOUT_ERROR; for (n = 0; n < H5_REPACK_MAX_NFILTERS; n++) { diff --git a/tools/h5repack/h5repack.h b/tools/h5repack/h5repack.h index 69e36fc..329be1f 100644 --- a/tools/h5repack/h5repack.h +++ b/tools/h5repack/h5repack.h @@ -105,7 +105,7 @@ typedef struct { int verbose; /*verbose mode */ hsize_t min_comp; /*minimum size to compress, in bytes */ int use_native; /*use a native type in write */ - int latest; /*pack file with the latest file format */ + hbool_t latest; /*pack file with the latest file format */ int grp_compact; /* Set the maximum number of links to store as header messages in the group */ int grp_indexed; /* Set the minimum number of links to store in the indexed format */ int msg_size[8]; /* Minimum size of shared messages: dataspace, @@ -138,7 +138,8 @@ extern "C" { int h5repack(const char* infile, const char* outfile, pack_opt_t *options); int h5repack_addfilter(const char* str, pack_opt_t *options); int h5repack_addlayout(const char* str, pack_opt_t *options); -int h5repack_init(pack_opt_t *options, int verbose, H5F_file_space_type_t strategy, hsize_t threshold); +int h5repack_init(pack_opt_t *options, int verbose, hbool_t latest, + H5F_file_space_type_t strategy, hsize_t threshold); int h5repack_end(pack_opt_t *options); int h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options); int h5repack_cmp_pl(const char *fname1, const char *fname2); diff --git a/tools/h5repack/h5repack_main.c b/tools/h5repack/h5repack_main.c index c56e3ce..c03b7a7 100644 --- a/tools/h5repack/h5repack_main.c +++ b/tools/h5repack/h5repack_main.c @@ -360,7 +360,7 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) { has_i_o = 1; break; - /* -o for backward compability */ + /* -o for backward compability */ case 'o': outfile = opt_arg; has_i_o = 1; @@ -423,19 +423,19 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) { break; case 'L': - options->latest = 1; + options->latest = TRUE; break; case 'c': options->grp_compact = HDatoi( opt_arg ); if (options->grp_compact > 0) - options->latest = 1; /* must use latest format */ + options->latest = TRUE; /* must use latest format */ break; case 'd': options->grp_indexed = HDatoi( opt_arg ); if (options->grp_indexed > 0) - options->latest = 1; /* must use latest format */ + options->latest = TRUE; /* must use latest format */ break; case 's': @@ -443,7 +443,7 @@ int parse_command_line(int argc, const char **argv, pack_opt_t* options) { int idx = 0; int ssize = 0; char *msgPtr = HDstrchr( opt_arg, ':'); - options->latest = 1; /* must use latest format */ + options->latest = TRUE; /* must use latest format */ if (msgPtr == NULL) { ssize = HDatoi( opt_arg ); for (idx = 0; idx < 5; idx++) @@ -579,7 +579,7 @@ int main(int argc, const char **argv) { } /* initialize options */ - h5repack_init(&options, 0, H5F_FILE_SPACE_DEFAULT, (hsize_t) 0); + h5repack_init(&options, 0, FALSE, H5F_FILE_SPACE_DEFAULT, (hsize_t) 0); if (parse_command_line(argc, argv, &options) < 0) goto done; diff --git a/tools/h5repack/h5repacktst.c b/tools/h5repack/h5repacktst.c index 972014d..07ea676 100644 --- a/tools/h5repack/h5repacktst.c +++ b/tools/h5repack/h5repacktst.c @@ -214,7 +214,7 @@ int main (void) TESTING(" copy of datasets (fill values)"); /* fs_type = 0; fs_size = 0 */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME0,FNAME0OUT,&pack_options) < 0) GOERROR; @@ -234,7 +234,7 @@ int main (void) *------------------------------------------------------------------------- */ TESTING(" copy of datasets (all datatypes)"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME1,FNAME1OUT,&pack_options) < 0) GOERROR; @@ -254,7 +254,7 @@ int main (void) *------------------------------------------------------------------------- */ TESTING(" copy of datasets (attributes)"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME2,FNAME2OUT,&pack_options) < 0) GOERROR; @@ -273,7 +273,7 @@ int main (void) *------------------------------------------------------------------------- */ TESTING(" copy of datasets (hardlinks)"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME3,FNAME3OUT,&pack_options) < 0) GOERROR; @@ -293,7 +293,7 @@ int main (void) *------------------------------------------------------------------------- */ TESTING(" copy of allocation early file"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME5,FNAME5OUT,&pack_options) < 0) GOERROR; @@ -314,7 +314,7 @@ int main (void) * deflate *------------------------------------------------------------------------- */ - TESTING(" adding deflate filter"); + TESTING(" adding deflate filter (old_format)"); #ifdef H5_HAVE_FILTER_DEFLATE @@ -323,7 +323,34 @@ int main (void) *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addfilter("dset1:GZIP=9",&pack_options) < 0) + GOERROR; + if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options) <= 0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); +#else + SKIPPED(); +#endif + + TESTING(" adding deflate filter (new format)"); +#ifdef H5_HAVE_FILTER_DEFLATE + /*------------------------------------------------------------------------- + * test an individual object option + * For new format, "dset1" should be using Fixed Array indexing + *------------------------------------------------------------------------- + */ + + if (h5repack_init (&pack_options, 0, TRUE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset1:GZIP=9",&pack_options) < 0) GOERROR; @@ -351,7 +378,7 @@ int main (void) #ifdef H5_HAVE_FILTER_DEFLATE - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("GZIP=1",&pack_options) < 0) GOERROR; @@ -389,7 +416,7 @@ int main (void) */ if (szip_can_encode) { - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset2:SZIP=8,EC",&pack_options) < 0) GOERROR; @@ -421,7 +448,7 @@ int main (void) #if defined (H5_HAVE_FILTER_SZIP) if (szip_can_encode) { - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("SZIP=8,NN",&pack_options) < 0) GOERROR; @@ -450,7 +477,7 @@ int main (void) *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset1:SHUF",&pack_options) < 0) GOERROR; @@ -475,7 +502,7 @@ int main (void) TESTING(" addding shuffle filter to all"); /* fs_type = H5F_FILE_SPACE_ALL_PERSIST; fs_size = 1 */ - if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) GOERROR; if (h5repack_addfilter("SHUF",&pack_options) < 0) GOERROR; @@ -500,7 +527,7 @@ int main (void) *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset1:FLET",&pack_options) < 0) GOERROR; @@ -525,7 +552,7 @@ int main (void) TESTING(" adding checksum filter to all"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("FLET",&pack_options) < 0) GOERROR; @@ -550,7 +577,7 @@ int main (void) *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset1:CHUNK 20x10",&pack_options) < 0) GOERROR; @@ -583,14 +610,36 @@ int main (void) PASSED(); - TESTING(" adding layout chunked"); + TESTING(" adding layout chunked (old format)"); + + /*------------------------------------------------------------------------- + * test an individual object option + *------------------------------------------------------------------------- + */ + + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) + GOERROR; + if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0) + GOERROR; + if (h5repack(FNAME4,FNAME4OUT,&pack_options) < 0) + GOERROR; + if (h5diff(FNAME4,FNAME4OUT,NULL,NULL,&diff_options) >0) + GOERROR; + if (h5repack_verify(FNAME4, FNAME4OUT, &pack_options )<= 0) + GOERROR; + if (h5repack_end (&pack_options) < 0) + GOERROR; + PASSED(); + + TESTING(" adding layout chunked (new format)"); /*------------------------------------------------------------------------- * test an individual object option + * For new format, "dset1" should be using Fixed Array indexing *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, TRUE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset1:CHUNK=20x10",&pack_options) < 0) GOERROR; @@ -610,7 +659,7 @@ int main (void) */ TESTING(" adding layout chunked to all"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("CHUNK=20x10",&pack_options) < 0) GOERROR; @@ -631,7 +680,7 @@ int main (void) * test an individual object option *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset1:CONTI",&pack_options) < 0) GOERROR; @@ -652,7 +701,7 @@ int main (void) * test all objects option *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("CONTI",&pack_options) < 0) GOERROR; @@ -669,7 +718,7 @@ int main (void) * do the same test for a file with filters (chunked) *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("CONTI",&pack_options) < 0) GOERROR; @@ -691,7 +740,7 @@ int main (void) *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset1:COMPA",&pack_options) < 0) GOERROR; @@ -713,7 +762,7 @@ int main (void) */ /* fs_type = H5F_FILE_SPACE_ALL; fs_size = 2 */ - if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) GOERROR; if (h5repack_addlayout("COMPA",&pack_options) < 0) GOERROR; @@ -735,7 +784,7 @@ int main (void) * layout compact to contiguous conversion *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_compact:CONTI",&pack_options) < 0) GOERROR; @@ -755,7 +804,7 @@ int main (void) * layout compact to chunk conversion *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_compact:CHUNK=2x5",&pack_options) < 0) GOERROR; @@ -775,7 +824,7 @@ int main (void) * layout compact to compact conversion *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_compact:COMPA",&pack_options) < 0) GOERROR; @@ -794,7 +843,7 @@ int main (void) * layout contiguous to compact conversion *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_contiguous:COMPA",&pack_options) < 0) GOERROR; @@ -813,7 +862,7 @@ int main (void) * layout contiguous to chunk conversion *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_contiguous:CHUNK=3x6",&pack_options) < 0) GOERROR; @@ -833,7 +882,7 @@ int main (void) * layout contiguous to contiguous conversion *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_contiguous:CONTI",&pack_options) < 0) GOERROR; @@ -852,7 +901,7 @@ int main (void) * layout chunked to compact conversion *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_chunk:COMPA",&pack_options) < 0) GOERROR; @@ -872,7 +921,7 @@ int main (void) * layout chunked to contiguous conversion *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_chunk:CONTI",&pack_options) < 0) GOERROR; @@ -891,7 +940,7 @@ int main (void) * layout chunked to chunked conversion *------------------------------------------------------------------------- */ - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addlayout("dset_chunk:CHUNK=18x13",&pack_options) < 0) GOERROR; @@ -922,7 +971,7 @@ int main (void) #if defined (H5_HAVE_FILTER_SZIP) if (szip_can_encode) { /* fs_type = H5F_FILE_SPACE_AGGR_VFD; fs_size = 3 */ - if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) GOERROR; if (h5repack(FNAME7,FNAME7OUT,&pack_options) < 0) GOERROR; @@ -947,7 +996,7 @@ int main (void) #if defined (H5_HAVE_FILTER_SZIP) if (szip_can_encode) { - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_szip:NONE",&pack_options) < 0) GOERROR; @@ -972,7 +1021,7 @@ int main (void) TESTING(" copy of deflate filter"); #ifdef H5_HAVE_FILTER_DEFLATE - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME8,FNAME8OUT,&pack_options) < 0) GOERROR; @@ -992,7 +1041,7 @@ int main (void) TESTING(" removing deflate filter"); #ifdef H5_HAVE_FILTER_DEFLATE - if (h5repack_init (&pack_options, 0, fs_type, ++fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, ++fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_deflate:NONE",&pack_options) < 0) GOERROR; @@ -1014,7 +1063,7 @@ int main (void) TESTING(" copy of shuffle filter"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME9,FNAME9OUT,&pack_options) < 0) GOERROR; @@ -1030,7 +1079,7 @@ int main (void) TESTING(" removing shuffle filter"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_shuffle:NONE",&pack_options) < 0) GOERROR; @@ -1048,7 +1097,7 @@ int main (void) TESTING(" copy of fletcher filter"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME10,FNAME10OUT,&pack_options) < 0) GOERROR; @@ -1064,7 +1113,7 @@ int main (void) TESTING(" removing fletcher filter"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_fletcher32:NONE",&pack_options) < 0) GOERROR; @@ -1082,7 +1131,7 @@ int main (void) TESTING(" copy of nbit filter"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME12,FNAME12OUT,&pack_options) < 0) GOERROR; @@ -1098,7 +1147,7 @@ int main (void) TESTING(" removing nbit filter"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_nbit:NONE",&pack_options) < 0) GOERROR; @@ -1116,7 +1165,7 @@ int main (void) TESTING(" adding nbit filter"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_int31:NBIT",&pack_options) < 0) GOERROR; @@ -1134,7 +1183,7 @@ int main (void) TESTING(" copy of scaleoffset filter"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME13,FNAME13OUT,&pack_options) < 0) GOERROR; @@ -1150,7 +1199,7 @@ int main (void) TESTING(" removing scaleoffset filter"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_scaleoffset:NONE",&pack_options) < 0) GOERROR; @@ -1168,7 +1217,7 @@ int main (void) TESTING(" adding scaleoffset filter"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_none:SOFF=31,IN",&pack_options) < 0) GOERROR; @@ -1201,7 +1250,7 @@ int main (void) if (szip_can_encode) { /* fs_type = H5F_FILE_SPACE_VFD; fs_size = 4 */ - if (h5repack_init (&pack_options, 0, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, H5_INC_ENUM(H5F_file_space_type_t, fs_type), ++fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_deflate:SZIP=8,NN",&pack_options) < 0) GOERROR; @@ -1227,7 +1276,7 @@ int main (void) #if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE) if (szip_can_encode) { - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("dset_szip:GZIP=1",&pack_options) < 0) GOERROR; @@ -1258,7 +1307,7 @@ int main (void) #if defined (H5_HAVE_FILTER_SZIP) && defined (H5_HAVE_FILTER_DEFLATE) - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("NONE",&pack_options) < 0) GOERROR; @@ -1282,7 +1331,7 @@ int main (void) */ TESTING(" big file"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME14,FNAME14OUT,&pack_options) < 0) GOERROR; @@ -1299,7 +1348,7 @@ int main (void) *------------------------------------------------------------------------- */ TESTING(" external datasets"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack(FNAME15,FNAME15OUT,&pack_options) < 0) GOERROR; @@ -1316,7 +1365,7 @@ int main (void) *------------------------------------------------------------------------- */ TESTING(" file with userblock"); - if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0) + if(h5repack_init(&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if(h5repack(FNAME16, FNAME16OUT, &pack_options) < 0) GOERROR; @@ -1335,7 +1384,7 @@ int main (void) *------------------------------------------------------------------------- */ TESTING(" latest file format options"); - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; pack_options.latest=1; pack_options.grp_compact=10; @@ -1365,7 +1414,7 @@ int main (void) #if defined (H5_HAVE_FILTER_DEFLATE) - if (h5repack_init (&pack_options, 0, fs_type, fs_size) < 0) + if (h5repack_init (&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if (h5repack_addfilter("GZIP=1",&pack_options) < 0) GOERROR; @@ -1394,7 +1443,7 @@ int main (void) #ifdef H5_HAVE_FILTER_DEFLATE - if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0) + if(h5repack_init(&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; /* add the options for a user block size and user block filename */ @@ -1427,7 +1476,7 @@ int main (void) #ifdef H5_HAVE_FILTER_DEFLATE - if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0) + if(h5repack_init(&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; /* add the options for aligment */ @@ -1481,7 +1530,7 @@ int main (void) */ TESTING(" file with committed datatypes"); - if(h5repack_init(&pack_options, 0, fs_type, fs_size) < 0) + if(h5repack_init(&pack_options, 0, FALSE, fs_type, fs_size) < 0) GOERROR; if(h5repack(FNAME17, FNAME17OUT, &pack_options) < 0) @@ -1508,7 +1557,7 @@ int main (void) /* First run without metadata option. No need to verify the correctness */ /* since this has been verified by earlier tests. Just record the file */ /* size of the output file. */ - if(h5repack_init(&pack_options, 0, H5F_FILE_SPACE_DEFAULT, (hsize_t)0) < 0) + if(h5repack_init(&pack_options, 0, FALSE, H5F_FILE_SPACE_DEFAULT, (hsize_t)0) < 0) GOERROR; if(h5repack(FNAME4, FNAME4OUT, &pack_options) < 0) GOERROR; @@ -1519,7 +1568,7 @@ int main (void) GOERROR; /* run it again with metadata option */ - if(h5repack_init(&pack_options, 0, H5F_FILE_SPACE_DEFAULT, (hsize_t)0) < 0) + if(h5repack_init(&pack_options, 0, FALSE, H5F_FILE_SPACE_DEFAULT, (hsize_t)0) < 0) GOERROR; pack_options.meta_block_size = 8192; if(h5repack(FNAME4, FNAME4OUT, &pack_options) < 0) diff --git a/tools/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl b/tools/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl index b8e7e68..75f54fa 100644 --- a/tools/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl +++ b/tools/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl @@ -12,7 +12,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -30,7 +30,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -48,7 +48,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -66,7 +66,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -74,7 +74,7 @@ GROUP "/" { } DATASET "dset_chunk" { DATATYPE H5T_STD_I32LE - DATASPACE SIMPLE { ( 40, 20 ) / ( 40, H5S_UNLIMITED ) } + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 20, 10 ) SIZE 1283 (2.494:1 COMPRESSION) @@ -84,7 +84,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -102,7 +102,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -120,7 +120,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR diff --git a/tools/h5repack/testfiles/h5repack_attr.h5 b/tools/h5repack/testfiles/h5repack_attr.h5 Binary files differindex fe066db..80df0be 100644 --- a/tools/h5repack/testfiles/h5repack_attr.h5 +++ b/tools/h5repack/testfiles/h5repack_attr.h5 diff --git a/tools/h5repack/testfiles/h5repack_attr_refs.h5 b/tools/h5repack/testfiles/h5repack_attr_refs.h5 Binary files differindex 56974a3..1b0ca34 100644 --- a/tools/h5repack/testfiles/h5repack_attr_refs.h5 +++ b/tools/h5repack/testfiles/h5repack_attr_refs.h5 diff --git a/tools/h5repack/testfiles/h5repack_deflate.h5 b/tools/h5repack/testfiles/h5repack_deflate.h5 Binary files differindex 3a4b86d..4988491 100644 --- a/tools/h5repack/testfiles/h5repack_deflate.h5 +++ b/tools/h5repack/testfiles/h5repack_deflate.h5 diff --git a/tools/h5repack/testfiles/h5repack_early.h5 b/tools/h5repack/testfiles/h5repack_early.h5 Binary files differindex 9b92890..d9a7ece 100644 --- a/tools/h5repack/testfiles/h5repack_early.h5 +++ b/tools/h5repack/testfiles/h5repack_early.h5 diff --git a/tools/h5repack/testfiles/h5repack_ext.h5 b/tools/h5repack/testfiles/h5repack_ext.h5 Binary files differindex 1fe88c9..8518b5b 100644 --- a/tools/h5repack/testfiles/h5repack_ext.h5 +++ b/tools/h5repack/testfiles/h5repack_ext.h5 diff --git a/tools/h5repack/testfiles/h5repack_fill.h5 b/tools/h5repack/testfiles/h5repack_fill.h5 Binary files differindex 21516cb..ac40089 100644 --- a/tools/h5repack/testfiles/h5repack_fill.h5 +++ b/tools/h5repack/testfiles/h5repack_fill.h5 diff --git a/tools/h5repack/testfiles/h5repack_filters.h5 b/tools/h5repack/testfiles/h5repack_filters.h5 Binary files differindex 042b8db..eabade8 100644 --- a/tools/h5repack/testfiles/h5repack_filters.h5 +++ b/tools/h5repack/testfiles/h5repack_filters.h5 diff --git a/tools/h5repack/testfiles/h5repack_fletcher.h5 b/tools/h5repack/testfiles/h5repack_fletcher.h5 Binary files differindex 2f137b0..16ca4ef 100644 --- a/tools/h5repack/testfiles/h5repack_fletcher.h5 +++ b/tools/h5repack/testfiles/h5repack_fletcher.h5 diff --git a/tools/h5repack/testfiles/h5repack_hlink.h5 b/tools/h5repack/testfiles/h5repack_hlink.h5 Binary files differindex 3d22728..80c0fcc 100644 --- a/tools/h5repack/testfiles/h5repack_hlink.h5 +++ b/tools/h5repack/testfiles/h5repack_hlink.h5 diff --git a/tools/h5repack/testfiles/h5repack_layout.UD.h5-plugin_none.ddl b/tools/h5repack/testfiles/h5repack_layout.UD.h5-plugin_none.ddl index fb94c21..66c4c69 100644 --- a/tools/h5repack/testfiles/h5repack_layout.UD.h5-plugin_none.ddl +++ b/tools/h5repack/testfiles/h5repack_layout.UD.h5-plugin_none.ddl @@ -12,7 +12,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -30,7 +30,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -48,7 +48,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -66,7 +66,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -84,7 +84,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -102,7 +102,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -120,7 +120,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR diff --git a/tools/h5repack/testfiles/h5repack_layout.h5 b/tools/h5repack/testfiles/h5repack_layout.h5 Binary files differindex 2cc44b1..4e53766 100644 --- a/tools/h5repack/testfiles/h5repack_layout.h5 +++ b/tools/h5repack/testfiles/h5repack_layout.h5 diff --git a/tools/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl b/tools/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl index 7a3a01e..a8b4562 100644 --- a/tools/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl +++ b/tools/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl @@ -16,7 +16,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -38,7 +38,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -60,7 +60,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -82,7 +82,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -90,7 +90,7 @@ GROUP "/" { } DATASET "dset_chunk" { DATATYPE H5T_STD_I32LE - DATASPACE SIMPLE { ( 40, 20 ) / ( 40, H5S_UNLIMITED ) } + DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 20, 10 ) SIZE 3200 (1.000:1 COMPRESSION) @@ -104,7 +104,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -126,7 +126,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR @@ -148,7 +148,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR diff --git a/tools/h5repack/testfiles/h5repack_layout2.h5 b/tools/h5repack/testfiles/h5repack_layout2.h5 Binary files differindex 6e77e41..f6821e5 100644 --- a/tools/h5repack/testfiles/h5repack_layout2.h5 +++ b/tools/h5repack/testfiles/h5repack_layout2.h5 diff --git a/tools/h5repack/testfiles/h5repack_layout3.h5 b/tools/h5repack/testfiles/h5repack_layout3.h5 Binary files differindex 7351502..6d2de41 100644 --- a/tools/h5repack/testfiles/h5repack_layout3.h5 +++ b/tools/h5repack/testfiles/h5repack_layout3.h5 diff --git a/tools/h5repack/testfiles/h5repack_named_dtypes.h5 b/tools/h5repack/testfiles/h5repack_named_dtypes.h5 Binary files differindex 108bb9f..85c1352 100644 --- a/tools/h5repack/testfiles/h5repack_named_dtypes.h5 +++ b/tools/h5repack/testfiles/h5repack_named_dtypes.h5 diff --git a/tools/h5repack/testfiles/h5repack_nbit.h5 b/tools/h5repack/testfiles/h5repack_nbit.h5 Binary files differindex 3ada112..ac71bee 100644 --- a/tools/h5repack/testfiles/h5repack_nbit.h5 +++ b/tools/h5repack/testfiles/h5repack_nbit.h5 diff --git a/tools/h5repack/testfiles/h5repack_objs.h5 b/tools/h5repack/testfiles/h5repack_objs.h5 Binary files differindex 16d55da..284b0ac 100644 --- a/tools/h5repack/testfiles/h5repack_objs.h5 +++ b/tools/h5repack/testfiles/h5repack_objs.h5 diff --git a/tools/h5repack/testfiles/h5repack_refs.h5 b/tools/h5repack/testfiles/h5repack_refs.h5 Binary files differindex 525267f..2a1ec9b 100644 --- a/tools/h5repack/testfiles/h5repack_refs.h5 +++ b/tools/h5repack/testfiles/h5repack_refs.h5 diff --git a/tools/h5repack/testfiles/h5repack_shuffle.h5 b/tools/h5repack/testfiles/h5repack_shuffle.h5 Binary files differindex d13cca7..c14e2cb 100644 --- a/tools/h5repack/testfiles/h5repack_shuffle.h5 +++ b/tools/h5repack/testfiles/h5repack_shuffle.h5 diff --git a/tools/h5repack/testfiles/h5repack_soffset.h5 b/tools/h5repack/testfiles/h5repack_soffset.h5 Binary files differindex 89ee99a..2acd867 100644 --- a/tools/h5repack/testfiles/h5repack_soffset.h5 +++ b/tools/h5repack/testfiles/h5repack_soffset.h5 diff --git a/tools/h5stat/h5stat_gentest.c b/tools/h5stat/h5stat_gentest.c index 100f5b2..ad7d093 100644 --- a/tools/h5stat/h5stat_gentest.c +++ b/tools/h5stat/h5stat_gentest.c @@ -43,7 +43,6 @@ /* * Generate HDF5 file with latest format with * NUM_GRPS groups and NUM_ATTRS attributes for the dataset - * */ static void gen_newgrat_file(const char *fname) @@ -111,6 +110,10 @@ gen_newgrat_file(const char *fname) } /* end for */ /* Close dataset, dataspace, datatype, file */ + if(H5Pclose(fapl) < 0) + goto error; + if(H5Pclose(fcpl) < 0) + goto error; if(H5Dclose(did) < 0) goto error; if(H5Sclose(sid) < 0) @@ -122,6 +125,8 @@ gen_newgrat_file(const char *fname) error: H5E_BEGIN_TRY { + H5Pclose(fapl); + H5Pclose(fcpl); H5Aclose(attr_id); H5Dclose(did); H5Tclose(tid); @@ -129,7 +134,6 @@ error: H5Gclose(gid); H5Fclose(fid); } H5E_END_TRY; - } /* gen_newgrat_file() */ /* diff --git a/tools/lib/CMakeLists.txt b/tools/lib/CMakeLists.txt index 38c84a2..ce1ad34 100644 --- a/tools/lib/CMakeLists.txt +++ b/tools/lib/CMakeLists.txt @@ -41,13 +41,8 @@ add_library (${HDF5_TOOLS_LIB_TARGET} STATIC ${H5_TOOLS_LIB_SRCS} ${H5_TOOLS_LIB TARGET_C_PROPERTIES (${HDF5_TOOLS_LIB_TARGET} STATIC " " " ") target_link_libraries (${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET}) set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_TOOLS_LIB_TARGET}") -H5_SET_LIB_OPTIONS ( - ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TOOLS_LIB_NAME} - STATIC - HDF5_TOOLS_LIB_NAME_RELEASE - HDF5_TOOLS_LIB_NAME_DEBUG -) -set_target_properties (${HDF5_TOOLS_LIB_TARGET} PROPERTIES +H5_SET_LIB_OPTIONS (${HDF5_TOOLS_LIB_TARGET} ${HDF5_TOOLS_LIB_NAME} STATIC) +set_target_properties (${HDF5_TOOLS_LIB_TARGET} PROPERTIES FOLDER libraries/tools INTERFACE_INCLUDE_DIRECTORIES "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" ) @@ -59,13 +54,8 @@ if (BUILD_SHARED_LIBS) TARGET_C_PROPERTIES (${HDF5_TOOLS_LIBSH_TARGET} SHARED " " " ") target_link_libraries (${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_LIBSH_TARGET}) set_global_variable (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF5_TOOLS_LIBSH_TARGET}") - H5_SET_LIB_OPTIONS ( - ${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_TOOLS_LIB_NAME} - SHARED - HDF5_TOOLS_LIB_NAME_RELEASE - HDF5_TOOLS_LIB_NAME_DEBUG - ) - set_target_properties (${HDF5_TOOLS_LIBSH_TARGET} PROPERTIES + H5_SET_LIB_OPTIONS (${HDF5_TOOLS_LIBSH_TARGET} ${HDF5_TOOLS_LIB_NAME} SHARED ${HDF5_TOOLS_PACKAGE_SOVERSION}) + set_target_properties (${HDF5_TOOLS_LIBSH_TARGET} PROPERTIES FOLDER libraries/tools COMPILE_DEFINITIONS "H5_BUILT_AS_DYNAMIC_LIB" INTERFACE_INCLUDE_DIRECTORIES "$<INSTALL_INTERFACE:$<INSTALL_PREFIX>/include>" diff --git a/tools/lib/h5tools.h b/tools/lib/h5tools.h index d2e3ea6..cec3b9d 100644 --- a/tools/lib/h5tools.h +++ b/tools/lib/h5tools.h @@ -510,7 +510,7 @@ typedef struct h5tools_context_t { hsize_t size_last_dim; /*the size of the last dimension, *needed so we can break after each *row */ - int indent_level; /*the number of times we need some + int indent_level; /*the number of times we need some *extra indentation */ int default_indent_level; /*this is used when the indent level gets changed */ hsize_t acc[H5S_MAX_RANK]; /* accumulator position */ diff --git a/tools/lib/h5tools_dump.c b/tools/lib/h5tools_dump.c index 1876e4f..5fb35bf 100644 --- a/tools/lib/h5tools_dump.c +++ b/tools/lib/h5tools_dump.c @@ -1359,7 +1359,7 @@ h5tools_display_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools if (ctx->ndims > 2) { for (i = 0; i < (size_t) ctx->ndims - 2; i++) { - max_start[i] = temp_start[i] + sset->count.data[i]; + max_start[i] = temp_start[i] + sset->count.data[i] * sset->stride.data[i]; temp_count[i] = 1; } } @@ -1401,14 +1401,10 @@ h5tools_display_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools /* increment start dimension */ do { reset_dim = 0; - temp_start[current_outer_dim]++; + temp_start[current_outer_dim] += sset->stride.data[current_outer_dim]; if (temp_start[current_outer_dim] >= max_start[current_outer_dim]) { temp_start[current_outer_dim] = sset->start.data[current_outer_dim]; - /* consider block */ - if (sset->block.data[current_outer_dim] > 1) - temp_start[current_outer_dim]++; - current_outer_dim--; reset_dim = 1; } @@ -2869,7 +2865,7 @@ h5tools_dump_oid(FILE *stream, const h5tool_format_t *info, *------------------------------------------------------------------------- */ static void -h5tools_print_virtual_selection(hid_t vspace, +h5tools_print_virtual_selection(hid_t vspace, FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, h5tools_str_t *buffer/*string into which to render */, @@ -3308,175 +3304,176 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, * FILTERS *------------------------------------------------------------------------- */ - + if (H5D_VIRTUAL != stl) { ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "%s %s", FILTERS, BEGIN); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - ctx->indent_level++; + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "%s %s", FILTERS, BEGIN); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - if(nfilters) { - for(i = 0; i < nfilters; i++) { - cd_nelmts = NELMTS(cd_values); - filtn = H5Pget_filter2(dcpl_id, (unsigned)i, &filt_flags, &cd_nelmts, - cd_values, sizeof(f_name), f_name, NULL); + ctx->indent_level++; - if(filtn < 0) - continue; /* nothing to print for invalid filter */ + if(nfilters) { + for(i = 0; i < nfilters; i++) { + cd_nelmts = NELMTS(cd_values); + filtn = H5Pget_filter2(dcpl_id, (unsigned)i, &filt_flags, &cd_nelmts, + cd_values, sizeof(f_name), f_name, NULL); - ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); + if(filtn < 0) + continue; /* nothing to print for invalid filter */ - h5tools_str_reset(&buffer); - switch(filtn) { - case H5Z_FILTER_DEFLATE: - h5tools_str_append(&buffer, "%s %s %s %d %s", DEFLATE, BEGIN, DEFLATE_LEVEL, cd_values[0], END); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - break; - case H5Z_FILTER_SHUFFLE: - h5tools_str_append(&buffer, "%s", SHUFFLE); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - break; - case H5Z_FILTER_FLETCHER32: - h5tools_str_append(&buffer, "%s", FLETCHER32); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - break; - case H5Z_FILTER_SZIP: - szip_options_mask = cd_values[0];; - szip_pixels_per_block = cd_values[1]; - - h5tools_str_append(&buffer, "%s %s", SZIP, BEGIN); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + ctx->need_prefix = TRUE; + h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - ctx->indent_level++; + h5tools_str_reset(&buffer); + switch(filtn) { + case H5Z_FILTER_DEFLATE: + h5tools_str_append(&buffer, "%s %s %s %d %s", DEFLATE, BEGIN, DEFLATE_LEVEL, cd_values[0], END); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + break; + case H5Z_FILTER_SHUFFLE: + h5tools_str_append(&buffer, "%s", SHUFFLE); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + break; + case H5Z_FILTER_FLETCHER32: + h5tools_str_append(&buffer, "%s", FLETCHER32); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + break; + case H5Z_FILTER_SZIP: + szip_options_mask = cd_values[0];; + szip_pixels_per_block = cd_values[1]; - ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); + h5tools_str_append(&buffer, "%s %s", SZIP, BEGIN); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "PIXELS_PER_BLOCK %d", szip_pixels_per_block); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + ctx->indent_level++; - ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); + ctx->need_prefix = TRUE; + h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - h5tools_str_reset(&buffer); - if(szip_options_mask & H5_SZIP_CHIP_OPTION_MASK) - h5tools_str_append(&buffer, "MODE %s", "HARDWARE"); - else if(szip_options_mask & H5_SZIP_ALLOW_K13_OPTION_MASK) - h5tools_str_append(&buffer, "MODE %s", "K13"); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "PIXELS_PER_BLOCK %d", szip_pixels_per_block); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); + ctx->need_prefix = TRUE; + h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - h5tools_str_reset(&buffer); - if(szip_options_mask & H5_SZIP_EC_OPTION_MASK) - h5tools_str_append(&buffer, "CODING %s", "ENTROPY"); - else if(szip_options_mask & H5_SZIP_NN_OPTION_MASK) - h5tools_str_append(&buffer, "CODING %s", "NEAREST NEIGHBOUR"); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + h5tools_str_reset(&buffer); + if(szip_options_mask & H5_SZIP_CHIP_OPTION_MASK) + h5tools_str_append(&buffer, "MODE %s", "HARDWARE"); + else if(szip_options_mask & H5_SZIP_ALLOW_K13_OPTION_MASK) + h5tools_str_append(&buffer, "MODE %s", "K13"); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); + ctx->need_prefix = TRUE; + h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - h5tools_str_reset(&buffer); - if(szip_options_mask & H5_SZIP_LSB_OPTION_MASK) - h5tools_str_append(&buffer, "BYTE_ORDER %s", "LSB"); - else if(szip_options_mask & H5_SZIP_MSB_OPTION_MASK) - h5tools_str_append(&buffer, "BYTE_ORDER %s", "MSB"); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + h5tools_str_reset(&buffer); + if(szip_options_mask & H5_SZIP_EC_OPTION_MASK) + h5tools_str_append(&buffer, "CODING %s", "ENTROPY"); + else if(szip_options_mask & H5_SZIP_NN_OPTION_MASK) + h5tools_str_append(&buffer, "CODING %s", "NEAREST NEIGHBOUR"); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - if(szip_options_mask & H5_SZIP_RAW_OPTION_MASK) { ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "HEADER %s", "RAW"); + if(szip_options_mask & H5_SZIP_LSB_OPTION_MASK) + h5tools_str_append(&buffer, "BYTE_ORDER %s", "LSB"); + else if(szip_options_mask & H5_SZIP_MSB_OPTION_MASK) + h5tools_str_append(&buffer, "BYTE_ORDER %s", "MSB"); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - } - ctx->indent_level--; + if(szip_options_mask & H5_SZIP_RAW_OPTION_MASK) { + ctx->need_prefix = TRUE; + h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "HEADER %s", "RAW"); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + } - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "%s", END); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - break; - case H5Z_FILTER_NBIT: - h5tools_str_append(&buffer, "%s", NBIT); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - break; - case H5Z_FILTER_SCALEOFFSET: - h5tools_str_append(&buffer, "%s %s %s %d %s", SCALEOFFSET, BEGIN, SCALEOFFSET_MINBIT, cd_values[0], END); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - break; - default: - h5tools_str_append(&buffer, "%s %s", "USER_DEFINED_FILTER", BEGIN); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + ctx->indent_level--; - ctx->indent_level++; + ctx->need_prefix = TRUE; + h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "%s", END); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + break; + case H5Z_FILTER_NBIT: + h5tools_str_append(&buffer, "%s", NBIT); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + break; + case H5Z_FILTER_SCALEOFFSET: + h5tools_str_append(&buffer, "%s %s %s %d %s", SCALEOFFSET, BEGIN, SCALEOFFSET_MINBIT, cd_values[0], END); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + break; + default: + h5tools_str_append(&buffer, "%s %s", "USER_DEFINED_FILTER", BEGIN); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "FILTER_ID %d", filtn); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + ctx->indent_level++; - if(f_name[0] != '\0') { ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "COMMENT %s", f_name); + h5tools_str_append(&buffer, "FILTER_ID %d", filtn); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - } - if (cd_nelmts) { + + if(f_name[0] != '\0') { + ctx->need_prefix = TRUE; + h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); + + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "COMMENT %s", f_name); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + } + if (cd_nelmts) { + ctx->need_prefix = TRUE; + h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); + + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "%s %s ","PARAMS", BEGIN); + for (j=0; j<cd_nelmts; j++) + h5tools_str_append(&buffer, "%d ", cd_values[j]); + h5tools_str_append(&buffer, "%s", END); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + } + ctx->indent_level--; + ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "%s %s ","PARAMS", BEGIN); - for (j=0; j<cd_nelmts; j++) - h5tools_str_append(&buffer, "%d ", cd_values[j]); - h5tools_str_append(&buffer, "%s", END); + h5tools_str_append(&buffer, "%s",END); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - } - ctx->indent_level--; + break; + }/*switch*/ + } /*i*/ + }/*nfilters*/ + else { - ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); + ctx->need_prefix = TRUE; + h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "%s",END); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - break; - }/*switch*/ - } /*i*/ - }/*nfilters*/ - else { + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "NONE"); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + } + ctx->indent_level--; ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "NONE"); + h5tools_str_append(&buffer, "%s",END); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - } - ctx->indent_level--; - - ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "%s",END); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + } /* end if (H5D_VIRTUAL != stl) */ /*------------------------------------------------------------------------- * FILLVALUE @@ -3521,12 +3518,22 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s ", "VALUE "); H5Pfill_value_defined(dcpl_id, &fvstatus); - if(fvstatus == H5D_FILL_VALUE_UNDEFINED) - h5tools_str_append(&buffer, "%s", "H5D_FILL_VALUE_UNDEFINED"); - else { - ctx->indent_level--; - h5tools_print_fill_value(&buffer, info, ctx, dcpl_id, type_id, obj_id); - ctx->indent_level++; + switch (fvstatus) { + case H5D_FILL_VALUE_UNDEFINED: + h5tools_str_append(&buffer, "%s", "H5D_FILL_VALUE_UNDEFINED"); + break; + case H5D_FILL_VALUE_DEFAULT: + h5tools_str_append(&buffer, "%s", "H5D_FILL_VALUE_DEFAULT"); + break; + case H5D_FILL_VALUE_USER_DEFINED: + ctx->indent_level--; + h5tools_print_fill_value(&buffer, info, ctx, dcpl_id, type_id, obj_id); + ctx->indent_level++; + break; + case H5D_FILL_VALUE_ERROR: + default: + HDassert(0); + break; } h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->indent_level--; @@ -3542,46 +3549,48 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, * ALLOCATION_TIME *------------------------------------------------------------------------- */ - ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); + if (H5D_VIRTUAL != stl) { + ctx->need_prefix = TRUE; + h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "ALLOCATION_TIME %s", BEGIN); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "ALLOCATION_TIME %s", BEGIN); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - ctx->indent_level++; + ctx->indent_level++; - ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); + ctx->need_prefix = TRUE; + h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - h5tools_str_reset(&buffer); - H5Pget_alloc_time(dcpl_id, &at); - switch(at) { - case H5D_ALLOC_TIME_EARLY: - h5tools_str_append(&buffer, "%s", "H5D_ALLOC_TIME_EARLY"); - break; - case H5D_ALLOC_TIME_INCR: - h5tools_str_append(&buffer, "%s", "H5D_ALLOC_TIME_INCR"); - break; - case H5D_ALLOC_TIME_LATE: - h5tools_str_append(&buffer, "%s", "H5D_ALLOC_TIME_LATE"); - break; - case H5D_ALLOC_TIME_ERROR: - case H5D_ALLOC_TIME_DEFAULT: - default: - HDassert(0); - break; - } - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + h5tools_str_reset(&buffer); + H5Pget_alloc_time(dcpl_id, &at); + switch(at) { + case H5D_ALLOC_TIME_EARLY: + h5tools_str_append(&buffer, "%s", "H5D_ALLOC_TIME_EARLY"); + break; + case H5D_ALLOC_TIME_INCR: + h5tools_str_append(&buffer, "%s", "H5D_ALLOC_TIME_INCR"); + break; + case H5D_ALLOC_TIME_LATE: + h5tools_str_append(&buffer, "%s", "H5D_ALLOC_TIME_LATE"); + break; + case H5D_ALLOC_TIME_ERROR: + case H5D_ALLOC_TIME_DEFAULT: + default: + HDassert(0); + break; + } + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - ctx->indent_level--; + ctx->indent_level--; - ctx->need_prefix = TRUE; - h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); + ctx->need_prefix = TRUE; + h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "%s", END); - h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "%s", END); + h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); + } /* end if (H5D_VIRTUAL != stl) */ h5tools_str_close(&buffer); } diff --git a/tools/lib/h5tools_str.c b/tools/lib/h5tools_str.c index bdb82a4..13c6a20 100644 --- a/tools/lib/h5tools_str.c +++ b/tools/lib/h5tools_str.c @@ -267,6 +267,9 @@ h5tools_str_fmt(h5tools_str_t *str/*in,out*/, size_t start, const char *fmt) { char _temp[1024], *temp = _temp; + HDassert(str); + HDassert(fmt); + /* If the format string is simply "%s" then don't bother doing anything */ if (!HDstrcmp(fmt, "%s")) return str->s; diff --git a/tools/lib/h5tools_utils.c b/tools/lib/h5tools_utils.c index a09a003..b87abf6 100644 --- a/tools/lib/h5tools_utils.c +++ b/tools/lib/h5tools_utils.c @@ -177,7 +177,7 @@ warn_msg(const char *fmt, ...) /*------------------------------------------------------------------------- * Function: help_ref_msg * - * Purpose: Print a message to refer help page + * Purpose: Print a message to refer help page * * Return: Nothing * @@ -224,7 +224,7 @@ get_option(int argc, const char **argv, const char *opts, const struct long_opti /* check for more flag-like tokens */ if (opt_ind >= argc || argv[opt_ind][0] != '-' || argv[opt_ind][1] == '\0') { return EOF; - } + } else if (HDstrcmp(argv[opt_ind], "--") == 0) { opt_ind++; return EOF; @@ -248,10 +248,10 @@ get_option(int argc, const char **argv, const char *opts, const struct long_opti opt_arg = &arg[len + 1]; } else if (l_opts[i].has_arg != optional_arg) { - if (opt_ind < (argc - 1)) + if (opt_ind < (argc - 1)) if (argv[opt_ind + 1][0] != '-') opt_arg = argv[++opt_ind]; - } + } else if (l_opts[i].has_arg == require_arg) { if (opt_err) HDfprintf(rawerrorstream, @@ -262,7 +262,7 @@ get_option(int argc, const char **argv, const char *opts, const struct long_opti } else opt_arg = NULL; - } + } else { if (arg[len] == '=') { if (opt_err) @@ -288,7 +288,7 @@ get_option(int argc, const char **argv, const char *opts, const struct long_opti opt_ind++; sp = 1; - } + } else { register char *cp; /* pointer into current token */ @@ -313,7 +313,7 @@ get_option(int argc, const char **argv, const char *opts, const struct long_opti if (argv[opt_ind][sp + 1] != '\0') { /* flag value is rest of current token */ opt_arg = &argv[opt_ind++][sp + 1]; - } + } else if (++opt_ind >= argc) { if (opt_err) HDfprintf(rawerrorstream, @@ -321,7 +321,7 @@ get_option(int argc, const char **argv, const char *opts, const struct long_opti argv[0], opt_opt); opt_opt = '?'; - } + } else { /* flag value is next token */ opt_arg = argv[opt_ind++]; @@ -334,8 +334,13 @@ get_option(int argc, const char **argv, const char *opts, const struct long_opti /* check the next argument */ opt_ind++; /* we do have an extra argument, check if not last */ - if ( argv[opt_ind][0] != '-' && (opt_ind+1) < argc ) { - opt_arg = argv[opt_ind++]; + if ( (opt_ind+1) < argc ) { + if ( argv[opt_ind][0] != '-' ) { + opt_arg = argv[opt_ind++]; + } + else { + opt_arg = NULL; + } } else { opt_arg = NULL; @@ -376,7 +381,7 @@ indentation(int x) if (x < h5tools_nCols) { while (x-- > 0) PRINTVALSTREAM(rawoutstream, " "); - } + } else { HDfprintf(rawerrorstream, "error: the indentation exceeds the number of cols.\n"); HDexit(1); @@ -721,7 +726,7 @@ tmpfile(void) /*------------------------------------------------------------------------- * Function: H5tools_get_symlink_info * - * Purpose: Get symbolic link (soft, external) info and its target object type + * Purpose: Get symbolic link (soft, external) info and its target object type (dataset, group, named datatype) and path, if exist * * Patameters: @@ -729,9 +734,9 @@ tmpfile(void) * - [IN] linkpath : link path * - [OUT] link_info: returning target object info (h5tool_link_info_t) * - * Return: - * 2 : given pathname is object - * 1 : Succed to get link info. + * Return: + * 2 : given pathname is object + * 1 : Succed to get link info. * 0 : Detected as a dangling link * -1 : H5 API failed. * @@ -795,7 +800,7 @@ H5tools_get_symlink_info(hid_t file_id, const char * linkpath, h5tool_link_info_ } /* end if */ /*----------------------------------------------------- - * if link type is external link use different lapl to + * if link type is external link use different lapl to * follow object in other file */ if(link_info->linfo.type == H5L_TYPE_EXTERNAL) { @@ -816,7 +821,7 @@ H5tools_get_symlink_info(hid_t file_id, const char * linkpath, h5tool_link_info_ */ /* check if target object exist */ l_ret = H5Oexists_by_name(file_id, linkpath, lapl); - + /* detect dangling link */ if(l_ret == FALSE) { ret = 0; @@ -824,7 +829,7 @@ H5tools_get_symlink_info(hid_t file_id, const char * linkpath, h5tool_link_info_ } /* end if */ /* function failed */ else if(l_ret < 0) - goto out; + goto out; /* get target object info */ if(H5Oget_info_by_name(file_id, linkpath, &trg_oinfo, lapl) < 0) { @@ -889,8 +894,8 @@ int h5tools_getstatus(void) } /*----------------------------------------------------------- - * PURPOSE : - * if environment variable H5TOOLS_BUFSIZE is set, + * PURPOSE : + * if environment variable H5TOOLS_BUFSIZE is set, * update H5TOOLS_BUFSIZE and H5TOOLS_MALLOCSIZE from the env * This can be called from each tools main() as part of initial act. * Note: this is more of debugging purpose for now. @@ -907,11 +912,11 @@ int h5tools_getenv_update_hyperslab_bufsize(void) hyperslab_bufsize_mb = HDstrtol(env_str, (char**)NULL, 10); if (errno != 0 || hyperslab_bufsize_mb <= 0) { - - /* TODO: later when pubilshed + + /* TODO: later when pubilshed HDfprintf(rawerrorstream,"Error: Invalid environment variable \"H5TOOLS_BUFSIZE\" : %s\n", env_str); */ - + goto error; } diff --git a/tools/misc/h5debug.c b/tools/misc/h5debug.c index 817f583..cd1fdca 100644 --- a/tools/misc/h5debug.c +++ b/tools/misc/h5debug.c @@ -306,13 +306,13 @@ main(int argc, char *argv[]) /* * Debug a local heap. */ - status = H5HL_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL); + status = H5HL_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL); } else if(!HDmemcmp (sig, H5HG_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a global heap collection. */ - status = H5HG_debug (f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL); + status = H5HG_debug (f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL); } else if(!HDmemcmp(sig, H5G_NODE_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* @@ -326,7 +326,7 @@ main(int argc, char *argv[]) HDfprintf(stderr, "\th5debug <filename> <Symbol table node address> <address of local heap>\n\n"); } /* end if */ - status = H5G_node_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra); + status = H5G_node_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, extra); } else if(!HDmemcmp(sig, H5B_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* @@ -348,7 +348,7 @@ main(int argc, char *argv[]) HDexit(4); } /* end if */ - status = H5G_node_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra); + status = H5G_node_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, extra); break; case H5B_CHUNK_ID: @@ -386,7 +386,7 @@ main(int argc, char *argv[]) /* Set the last dimension (the element size) to zero */ dim[ndims] = 0; - status = H5D_btree_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, ndims, dim); + status = H5D_btree_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, ndims, dim); break; case H5B_NUM_BTREE_ID: @@ -402,7 +402,7 @@ main(int argc, char *argv[]) const H5B2_class_t *cls = get_H5B2_class(sig); HDassert(cls); - status = H5B2__hdr_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, cls, (haddr_t)extra); + status = H5B2__hdr_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, cls, (haddr_t)extra); } else if(!HDmemcmp(sig, H5B2_INT_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* @@ -420,7 +420,7 @@ main(int argc, char *argv[]) HDexit(4); } /* end if */ - status = H5B2__int_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, cls, extra, (unsigned)extra2, (unsigned)extra3, (haddr_t)extra4); + status = H5B2__int_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, cls, extra, (unsigned)extra2, (unsigned)extra3, (haddr_t)extra4); } else if(!HDmemcmp(sig, H5B2_LEAF_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* @@ -437,13 +437,13 @@ main(int argc, char *argv[]) HDexit(4); } /* end if */ - status = H5B2__leaf_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, cls, extra, (unsigned)extra2, (haddr_t)extra3); + status = H5B2__leaf_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, cls, extra, (unsigned)extra2, (haddr_t)extra3); } else if(!HDmemcmp(sig, H5HF_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a fractal heap header. */ - status = H5HF_hdr_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL); + status = H5HF_hdr_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL); } else if(!HDmemcmp(sig, H5HF_DBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* @@ -458,7 +458,7 @@ main(int argc, char *argv[]) HDexit(4); } /* end if */ - status = H5HF_dblock_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra, (size_t)extra2); + status = H5HF_dblock_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, extra, (size_t)extra2); } else if(!HDmemcmp(sig, H5HF_IBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* @@ -473,14 +473,14 @@ main(int argc, char *argv[]) HDexit(4); } /* end if */ - status = H5HF_iblock_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra, (unsigned)extra2); + status = H5HF_iblock_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, extra, (unsigned)extra2); } else if(!HDmemcmp(sig, H5FS_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug a free space header. */ - status = H5FS_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL); + status = H5FS_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL); } else if(!HDmemcmp(sig, H5FS_SINFO_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* @@ -495,14 +495,14 @@ main(int argc, char *argv[]) HDexit(4); } /* end if */ - status = H5FS_sects_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, extra, extra2); + status = H5FS_sects_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, extra, extra2); } else if(!HDmemcmp(sig, H5SM_TABLE_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug shared message master table. */ - status = H5SM_table_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, (unsigned) UFAIL, (unsigned) UFAIL); + status = H5SM_table_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, (unsigned) UFAIL, (unsigned) UFAIL); } else if(!HDmemcmp(sig, H5SM_LIST_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* @@ -517,7 +517,7 @@ main(int argc, char *argv[]) HDexit(4); } /* end if */ - status = H5SM_list_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, (haddr_t)extra); + status = H5SM_list_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, (haddr_t)extra); } else if(!HDmemcmp(sig, H5EA_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* @@ -534,7 +534,7 @@ main(int argc, char *argv[]) HDexit(4); } /* end if */ - status = H5EA__hdr_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, cls, extra); + status = H5EA__hdr_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, cls, extra); } else if(!HDmemcmp(sig, H5EA_IBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* @@ -551,7 +551,7 @@ main(int argc, char *argv[]) HDexit(4); } /* end if */ - status = H5EA__iblock_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, cls, extra, extra2); + status = H5EA__iblock_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, cls, extra, extra2); } else if(!HDmemcmp(sig, H5EA_SBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* @@ -568,7 +568,7 @@ main(int argc, char *argv[]) HDexit(4); } /* end if */ - status = H5EA__sblock_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, cls, extra, (unsigned)extra2, extra3); + status = H5EA__sblock_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, cls, extra, (unsigned)extra2, extra3); } else if(!HDmemcmp(sig, H5EA_DBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* @@ -585,7 +585,7 @@ main(int argc, char *argv[]) HDexit(4); } /* end if */ - status = H5EA__dblock_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, cls, extra, (size_t)extra2, extra3); + status = H5EA__dblock_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, cls, extra, (size_t)extra2, extra3); } else if(!HDmemcmp(sig, H5FA_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* @@ -602,7 +602,7 @@ main(int argc, char *argv[]) HDexit(4); } /* end if */ - status = H5FA__hdr_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, cls, extra); + status = H5FA__hdr_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, cls, extra); } else if(!HDmemcmp(sig, H5FA_DBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* @@ -619,21 +619,21 @@ main(int argc, char *argv[]) HDexit(4); } /* end if */ - status = H5FA__dblock_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, cls, extra, extra2); + status = H5FA__dblock_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, cls, extra, extra2); } else if(!HDmemcmp(sig, H5O_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC)) { /* * Debug v2 object header (which have signatures). */ - status = H5O_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL); + status = H5O_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL); } else if(sig[0] == H5O_VERSION_1) { /* * This could be a v1 object header. Since they don't have a signature * it's a somewhat "ify" detection. */ - status = H5O_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL); + status = H5O_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL); } else { /* diff --git a/tools/perform/sio_standalone.h b/tools/perform/sio_standalone.h index 547a9ee..258eafb 100644 --- a/tools/perform/sio_standalone.h +++ b/tools/perform/sio_standalone.h @@ -210,11 +210,11 @@ H5_DLL int HDfprintf (FILE *stream, const char *fmt, ...); #define HDgetgrgid(G) getgrgid(G) #define HDgetgrnam(S) getgrnam(S) #define HDgetgroups(Z,G) getgroups(Z,G) -#ifdef H5_HAVE_VISUAL_STUDIO +#ifdef H5_HAVE_WIN32_API #define HDgetlogin() Wgetlogin() -#else /* H5_HAVE_VISUAL_STUDIO */ +#else /* H5_HAVE_WIN32_API */ #define HDgetlogin() getlogin() -#endif /* H5_HAVE_VISUAL_STUDIO */ +#endif /* H5_HAVE_WIN32_API */ #define HDgetpgrp() getpgrp() #define HDgetpid() getpid() #define HDgetppid() getppid() @@ -222,12 +222,12 @@ H5_DLL int HDfprintf (FILE *stream, const char *fmt, ...); #define HDgetpwuid(U) getpwuid(U) #define HDgetrusage(X,S) getrusage(X,S) #define HDgets(S) gets(S) -#ifdef H5_HAVE_VISUAL_STUDIO +#ifdef H5_HAVE_WIN32_API H5_DLL int Wgettimeofday(struct timeval *tv, struct timezone *tz); #define HDgettimeofday(V,Z) Wgettimeofday(V,Z) -#else /* H5_HAVE_VISUAL_STUDIO */ +#else /* H5_HAVE_WIN32_API */ #define HDgettimeofday(S,P) gettimeofday(S,P) -#endif /* H5_HAVE_VISUAL_STUDIO */ +#endif /* H5_HAVE_WIN32_API */ #define HDgetuid() getuid() #define HDgmtime(T) gmtime(T) #define HDisalnum(C) isalnum((int)(C)) /*cast for solaris warning*/ diff --git a/tools/testfiles/h5dump-help.txt b/tools/testfiles/h5dump-help.txt index 444dd97..fe22a1b 100644 --- a/tools/testfiles/h5dump-help.txt +++ b/tools/testfiles/h5dump-help.txt @@ -11,7 +11,7 @@ usage: h5dump [OPTIONS] files -o F, --output=F Output raw data into file F -b B, --binary=B Binary file output, of form B -O F, --ddl=F Output ddl text into file F - Do not use filename F to suppress ddl display + Use blank(empty) filename F to suppress ddl display --------------- Object Options --------------- -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the @@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files P can be the absolute path or just a relative path. -A, --onlyattr Print the header and value of attributes Optional value 0 suppresses printing attributes. + --vds-view-first-missing Set the VDS bounds to first missing mapped elements. + --vds-gap-size=N Set the missing file gap size, N=non-negative integers --------------- Object Property Options --------------- -i, --object-ids Print the object ids -p, --properties Print dataset filters, storage layout and fill value diff --git a/tools/testfiles/pbits/tnofilename-with-packed-bits.ddl b/tools/testfiles/pbits/tnofilename-with-packed-bits.ddl index 64a2880..767cbbf 100644 --- a/tools/testfiles/pbits/tnofilename-with-packed-bits.ddl +++ b/tools/testfiles/pbits/tnofilename-with-packed-bits.ddl @@ -11,7 +11,7 @@ usage: h5dump [OPTIONS] files -o F, --output=F Output raw data into file F -b B, --binary=B Binary file output, of form B -O F, --ddl=F Output ddl text into file F - Do not use filename F to suppress ddl display + Use blank(empty) filename F to suppress ddl display --------------- Object Options --------------- -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the @@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files P can be the absolute path or just a relative path. -A, --onlyattr Print the header and value of attributes Optional value 0 suppresses printing attributes. + --vds-view-first-missing Set the VDS bounds to first missing mapped elements. + --vds-gap-size=N Set the missing file gap size, N=non-negative integers --------------- Object Property Options --------------- -i, --object-ids Print the object ids -p, --properties Print dataset filters, storage layout and fill value diff --git a/tools/testfiles/pbits/tpbitsIncomplete.ddl b/tools/testfiles/pbits/tpbitsIncomplete.ddl index cdb1f91..d791b41 100644 --- a/tools/testfiles/pbits/tpbitsIncomplete.ddl +++ b/tools/testfiles/pbits/tpbitsIncomplete.ddl @@ -11,7 +11,7 @@ usage: h5dump [OPTIONS] files -o F, --output=F Output raw data into file F -b B, --binary=B Binary file output, of form B -O F, --ddl=F Output ddl text into file F - Do not use filename F to suppress ddl display + Use blank(empty) filename F to suppress ddl display --------------- Object Options --------------- -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the @@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files P can be the absolute path or just a relative path. -A, --onlyattr Print the header and value of attributes Optional value 0 suppresses printing attributes. + --vds-view-first-missing Set the VDS bounds to first missing mapped elements. + --vds-gap-size=N Set the missing file gap size, N=non-negative integers --------------- Object Property Options --------------- -i, --object-ids Print the object ids -p, --properties Print dataset filters, storage layout and fill value diff --git a/tools/testfiles/pbits/tpbitsLengthExceeded.ddl b/tools/testfiles/pbits/tpbitsLengthExceeded.ddl index 6d2492a..5235aa7 100644 --- a/tools/testfiles/pbits/tpbitsLengthExceeded.ddl +++ b/tools/testfiles/pbits/tpbitsLengthExceeded.ddl @@ -11,7 +11,7 @@ usage: h5dump [OPTIONS] files -o F, --output=F Output raw data into file F -b B, --binary=B Binary file output, of form B -O F, --ddl=F Output ddl text into file F - Do not use filename F to suppress ddl display + Use blank(empty) filename F to suppress ddl display --------------- Object Options --------------- -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the @@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files P can be the absolute path or just a relative path. -A, --onlyattr Print the header and value of attributes Optional value 0 suppresses printing attributes. + --vds-view-first-missing Set the VDS bounds to first missing mapped elements. + --vds-gap-size=N Set the missing file gap size, N=non-negative integers --------------- Object Property Options --------------- -i, --object-ids Print the object ids -p, --properties Print dataset filters, storage layout and fill value diff --git a/tools/testfiles/pbits/tpbitsLengthPositive.ddl b/tools/testfiles/pbits/tpbitsLengthPositive.ddl index 4f56619..697bff8 100644 --- a/tools/testfiles/pbits/tpbitsLengthPositive.ddl +++ b/tools/testfiles/pbits/tpbitsLengthPositive.ddl @@ -11,7 +11,7 @@ usage: h5dump [OPTIONS] files -o F, --output=F Output raw data into file F -b B, --binary=B Binary file output, of form B -O F, --ddl=F Output ddl text into file F - Do not use filename F to suppress ddl display + Use blank(empty) filename F to suppress ddl display --------------- Object Options --------------- -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the @@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files P can be the absolute path or just a relative path. -A, --onlyattr Print the header and value of attributes Optional value 0 suppresses printing attributes. + --vds-view-first-missing Set the VDS bounds to first missing mapped elements. + --vds-gap-size=N Set the missing file gap size, N=non-negative integers --------------- Object Property Options --------------- -i, --object-ids Print the object ids -p, --properties Print dataset filters, storage layout and fill value diff --git a/tools/testfiles/pbits/tpbitsMaxExceeded.ddl b/tools/testfiles/pbits/tpbitsMaxExceeded.ddl index 3432433..900c0b5 100644 --- a/tools/testfiles/pbits/tpbitsMaxExceeded.ddl +++ b/tools/testfiles/pbits/tpbitsMaxExceeded.ddl @@ -11,7 +11,7 @@ usage: h5dump [OPTIONS] files -o F, --output=F Output raw data into file F -b B, --binary=B Binary file output, of form B -O F, --ddl=F Output ddl text into file F - Do not use filename F to suppress ddl display + Use blank(empty) filename F to suppress ddl display --------------- Object Options --------------- -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the @@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files P can be the absolute path or just a relative path. -A, --onlyattr Print the header and value of attributes Optional value 0 suppresses printing attributes. + --vds-view-first-missing Set the VDS bounds to first missing mapped elements. + --vds-gap-size=N Set the missing file gap size, N=non-negative integers --------------- Object Property Options --------------- -i, --object-ids Print the object ids -p, --properties Print dataset filters, storage layout and fill value diff --git a/tools/testfiles/pbits/tpbitsOffsetExceeded.ddl b/tools/testfiles/pbits/tpbitsOffsetExceeded.ddl index e51a09e..65123d0 100644 --- a/tools/testfiles/pbits/tpbitsOffsetExceeded.ddl +++ b/tools/testfiles/pbits/tpbitsOffsetExceeded.ddl @@ -11,7 +11,7 @@ usage: h5dump [OPTIONS] files -o F, --output=F Output raw data into file F -b B, --binary=B Binary file output, of form B -O F, --ddl=F Output ddl text into file F - Do not use filename F to suppress ddl display + Use blank(empty) filename F to suppress ddl display --------------- Object Options --------------- -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the @@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files P can be the absolute path or just a relative path. -A, --onlyattr Print the header and value of attributes Optional value 0 suppresses printing attributes. + --vds-view-first-missing Set the VDS bounds to first missing mapped elements. + --vds-gap-size=N Set the missing file gap size, N=non-negative integers --------------- Object Property Options --------------- -i, --object-ids Print the object ids -p, --properties Print dataset filters, storage layout and fill value diff --git a/tools/testfiles/pbits/tpbitsOffsetNegative.ddl b/tools/testfiles/pbits/tpbitsOffsetNegative.ddl index ba6e46d..d352e34 100644 --- a/tools/testfiles/pbits/tpbitsOffsetNegative.ddl +++ b/tools/testfiles/pbits/tpbitsOffsetNegative.ddl @@ -11,7 +11,7 @@ usage: h5dump [OPTIONS] files -o F, --output=F Output raw data into file F -b B, --binary=B Binary file output, of form B -O F, --ddl=F Output ddl text into file F - Do not use filename F to suppress ddl display + Use blank(empty) filename F to suppress ddl display --------------- Object Options --------------- -a P, --attribute=P Print the specified attribute If an attribute name contains a slash (/), escape the @@ -25,6 +25,8 @@ usage: h5dump [OPTIONS] files P can be the absolute path or just a relative path. -A, --onlyattr Print the header and value of attributes Optional value 0 suppresses printing attributes. + --vds-view-first-missing Set the VDS bounds to first missing mapped elements. + --vds-gap-size=N Set the missing file gap size, N=non-negative integers --------------- Object Property Options --------------- -i, --object-ids Print the object ids -p, --properties Print dataset filters, storage layout and fill value diff --git a/tools/testfiles/tallfilters.ddl b/tools/testfiles/tallfilters.ddl index ac6762a..ff2454c 100644 --- a/tools/testfiles/tallfilters.ddl +++ b/tools/testfiles/tallfilters.ddl @@ -21,7 +21,7 @@ DATASET "all" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR diff --git a/tools/testfiles/tchunked.ddl b/tools/testfiles/tchunked.ddl index b68b233..bf620fe 100644 --- a/tools/testfiles/tchunked.ddl +++ b/tools/testfiles/tchunked.ddl @@ -12,7 +12,7 @@ COMMENT "This is a dataset with chunked storage" } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR diff --git a/tools/testfiles/tcompact.ddl b/tools/testfiles/tcompact.ddl index 918e2eb..977f959 100644 --- a/tools/testfiles/tcompact.ddl +++ b/tools/testfiles/tcompact.ddl @@ -12,7 +12,7 @@ COMMENT "This is a dataset with compact storage" } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_EARLY diff --git a/tools/testfiles/tcontiguos.ddl b/tools/testfiles/tcontiguos.ddl index 8e0158e..3f045e5 100644 --- a/tools/testfiles/tcontiguos.ddl +++ b/tools/testfiles/tcontiguos.ddl @@ -13,7 +13,7 @@ COMMENT "This is a dataset with contiguous storage" } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_LATE diff --git a/tools/testfiles/tdeflate.ddl b/tools/testfiles/tdeflate.ddl index 5603911..9b92d0e 100644 --- a/tools/testfiles/tdeflate.ddl +++ b/tools/testfiles/tdeflate.ddl @@ -11,7 +11,7 @@ DATASET "deflate" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR diff --git a/tools/testfiles/texternal.ddl b/tools/testfiles/texternal.ddl index 279831a..59cd22c 100644 --- a/tools/testfiles/texternal.ddl +++ b/tools/testfiles/texternal.ddl @@ -14,7 +14,7 @@ DATASET "external" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_LATE diff --git a/tools/testfiles/tfill.ddl b/tools/testfiles/tfill.ddl index 45497fd..556f4f2 100644 --- a/tools/testfiles/tfill.ddl +++ b/tools/testfiles/tfill.ddl @@ -13,7 +13,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE [ 0, 0, 0 ] + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_LATE @@ -136,7 +136,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_ALLOC - VALUE () + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_LATE @@ -158,7 +158,7 @@ GROUP "/" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_LATE diff --git a/tools/testfiles/tfletcher32.ddl b/tools/testfiles/tfletcher32.ddl index c341ded..01460e2 100644 --- a/tools/testfiles/tfletcher32.ddl +++ b/tools/testfiles/tfletcher32.ddl @@ -11,7 +11,7 @@ DATASET "fletcher32" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR diff --git a/tools/testfiles/tints4dims.ddl b/tools/testfiles/tints4dims.ddl new file mode 100644 index 0000000..ba5c852 --- /dev/null +++ b/tools/testfiles/tints4dims.ddl @@ -0,0 +1,202 @@ +HDF5 "tints4dims.h5" { +GROUP "/" { + DATASET "FourDimInts" { + DATATYPE H5T_STD_U32LE + DATASPACE SIMPLE { ( 4, 6, 8, 10 ) / ( 4, 6, 8, 10 ) } + DATA { + (0,0,0,0): 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, + (0,0,1,0): 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, + (0,0,2,0): 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, + (0,0,3,0): 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, + (0,0,4,0): 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, + (0,0,5,0): 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, + (0,0,6,0): 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, + (0,0,7,0): 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, + (0,1,0,0): 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, + (0,1,1,0): 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, + (0,1,2,0): 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, + (0,1,3,0): 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, + (0,1,4,0): 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, + (0,1,5,0): 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, + (0,1,6,0): 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, + (0,1,7,0): 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, + (0,2,0,0): 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, + (0,2,1,0): 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, + (0,2,2,0): 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, + (0,2,3,0): 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, + (0,2,4,0): 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, + (0,2,5,0): 210, 211, 212, 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1550, 1551, 1552, 1553, 1554, 1555, 1556, 1557, 1558, 1559, + (3,1,4,0): 1560, 1561, 1562, 1563, 1564, 1565, 1566, 1567, 1568, 1569, + (3,1,5,0): 1570, 1571, 1572, 1573, 1574, 1575, 1576, 1577, 1578, 1579, + (3,1,6,0): 1580, 1581, 1582, 1583, 1584, 1585, 1586, 1587, 1588, 1589, + (3,1,7,0): 1590, 1591, 1592, 1593, 1594, 1595, 1596, 1597, 1598, 1599, + (3,2,0,0): 1600, 1601, 1602, 1603, 1604, 1605, 1606, 1607, 1608, 1609, + (3,2,1,0): 1610, 1611, 1612, 1613, 1614, 1615, 1616, 1617, 1618, 1619, + (3,2,2,0): 1620, 1621, 1622, 1623, 1624, 1625, 1626, 1627, 1628, 1629, + (3,2,3,0): 1630, 1631, 1632, 1633, 1634, 1635, 1636, 1637, 1638, 1639, + (3,2,4,0): 1640, 1641, 1642, 1643, 1644, 1645, 1646, 1647, 1648, 1649, + (3,2,5,0): 1650, 1651, 1652, 1653, 1654, 1655, 1656, 1657, 1658, 1659, + (3,2,6,0): 1660, 1661, 1662, 1663, 1664, 1665, 1666, 1667, 1668, 1669, + (3,2,7,0): 1670, 1671, 1672, 1673, 1674, 1675, 1676, 1677, 1678, 1679, + (3,3,0,0): 1680, 1681, 1682, 1683, 1684, 1685, 1686, 1687, 1688, 1689, + (3,3,1,0): 1690, 1691, 1692, 1693, 1694, 1695, 1696, 1697, 1698, 1699, + (3,3,2,0): 1700, 1701, 1702, 1703, 1704, 1705, 1706, 1707, 1708, 1709, + (3,3,3,0): 1710, 1711, 1712, 1713, 1714, 1715, 1716, 1717, 1718, 1719, + (3,3,4,0): 1720, 1721, 1722, 1723, 1724, 1725, 1726, 1727, 1728, 1729, + (3,3,5,0): 1730, 1731, 1732, 1733, 1734, 1735, 1736, 1737, 1738, 1739, + (3,3,6,0): 1740, 1741, 1742, 1743, 1744, 1745, 1746, 1747, 1748, 1749, + (3,3,7,0): 1750, 1751, 1752, 1753, 1754, 1755, 1756, 1757, 1758, 1759, + (3,4,0,0): 1760, 1761, 1762, 1763, 1764, 1765, 1766, 1767, 1768, 1769, + (3,4,1,0): 1770, 1771, 1772, 1773, 1774, 1775, 1776, 1777, 1778, 1779, + (3,4,2,0): 1780, 1781, 1782, 1783, 1784, 1785, 1786, 1787, 1788, 1789, + (3,4,3,0): 1790, 1791, 1792, 1793, 1794, 1795, 1796, 1797, 1798, 1799, + (3,4,4,0): 1800, 1801, 1802, 1803, 1804, 1805, 1806, 1807, 1808, 1809, + (3,4,5,0): 1810, 1811, 1812, 1813, 1814, 1815, 1816, 1817, 1818, 1819, + (3,4,6,0): 1820, 1821, 1822, 1823, 1824, 1825, 1826, 1827, 1828, 1829, + (3,4,7,0): 1830, 1831, 1832, 1833, 1834, 1835, 1836, 1837, 1838, 1839, + (3,5,0,0): 1840, 1841, 1842, 1843, 1844, 1845, 1846, 1847, 1848, 1849, + (3,5,1,0): 1850, 1851, 1852, 1853, 1854, 1855, 1856, 1857, 1858, 1859, + (3,5,2,0): 1860, 1861, 1862, 1863, 1864, 1865, 1866, 1867, 1868, 1869, + (3,5,3,0): 1870, 1871, 1872, 1873, 1874, 1875, 1876, 1877, 1878, 1879, + (3,5,4,0): 1880, 1881, 1882, 1883, 1884, 1885, 1886, 1887, 1888, 1889, + (3,5,5,0): 1890, 1891, 1892, 1893, 1894, 1895, 1896, 1897, 1898, 1899, + (3,5,6,0): 1900, 1901, 1902, 1903, 1904, 1905, 1906, 1907, 1908, 1909, + (3,5,7,0): 1910, 1911, 1912, 1913, 1914, 1915, 1916, 1917, 1918, 1919 + } + } +} +} diff --git a/tools/testfiles/tints4dims.h5 b/tools/testfiles/tints4dims.h5 Binary files differnew file mode 100644 index 0000000..2fe8321 --- /dev/null +++ b/tools/testfiles/tints4dims.h5 diff --git a/tools/testfiles/tints4dimsBlock2.ddl b/tools/testfiles/tints4dimsBlock2.ddl new file mode 100644 index 0000000..f414e10 --- /dev/null +++ b/tools/testfiles/tints4dimsBlock2.ddl @@ -0,0 +1,16 @@ +HDF5 "tints4dims.h5" { +DATASET "FourDimInts" { + DATATYPE H5T_STD_U32LE + DATASPACE SIMPLE { ( 4, 6, 8, 10 ) / ( 4, 6, 8, 10 ) } + SUBSET { + START ( 0, 0, 0, 0 ); + STRIDE ( 1, 1, 1, 1 ); + COUNT ( 1, 1, 1, 1 ); + BLOCK ( 2, 2, 2, 2 ); + DATA { + (0,0,0,0): 0, 1, 80, 81, 480, 481, 560, 561, + (0,0,1,0): 10, 11, 90, 91, 490, 491, 570, 571 + } + } +} +} diff --git a/tools/testfiles/tints4dimsBlockEq.ddl b/tools/testfiles/tints4dimsBlockEq.ddl new file mode 100644 index 0000000..6625780 --- /dev/null +++ b/tools/testfiles/tints4dimsBlockEq.ddl @@ -0,0 +1,30 @@ +HDF5 "tints4dims.h5" { +DATASET "FourDimInts" { + DATATYPE H5T_STD_U32LE + DATASPACE SIMPLE { ( 4, 6, 8, 10 ) / ( 4, 6, 8, 10 ) } + SUBSET { + START ( 0, 0, 0, 0 ); + STRIDE ( 2, 2, 1, 1 ); + COUNT ( 2, 2, 1, 1 ); + BLOCK ( 1, 2, 4, 4 ); + DATA { + (0,0,0,0): 0, 1, 2, 3, 80, 81, 82, 83, + (0,0,1,0): 10, 11, 12, 13, 90, 91, 92, 93, + (0,0,2,0): 20, 21, 22, 23, 100, 101, 102, 103, + (0,0,3,0): 30, 31, 32, 33, 110, 111, 112, 113 + (0,2,0,0): 160, 161, 162, 163, 240, 241, 242, 243, + (0,2,1,0): 170, 171, 172, 173, 250, 251, 252, 253, + (0,2,2,0): 180, 181, 182, 183, 260, 261, 262, 263, + (0,2,3,0): 190, 191, 192, 193, 270, 271, 272, 273 + (2,0,0,0): 960, 961, 962, 963, 1040, 1041, 1042, 1043, + (2,0,1,0): 970, 971, 972, 973, 1050, 1051, 1052, 1053, + (2,0,2,0): 980, 981, 982, 983, 1060, 1061, 1062, 1063, + (2,0,3,0): 990, 991, 992, 993, 1070, 1071, 1072, 1073 + (2,2,0,0): 1120, 1121, 1122, 1123, 1200, 1201, 1202, 1203, + (2,2,1,0): 1130, 1131, 1132, 1133, 1210, 1211, 1212, 1213, + (2,2,2,0): 1140, 1141, 1142, 1143, 1220, 1221, 1222, 1223, + (2,2,3,0): 1150, 1151, 1152, 1153, 1230, 1231, 1232, 1233 + } + } +} +} diff --git a/tools/testfiles/tints4dimsCount2.ddl b/tools/testfiles/tints4dimsCount2.ddl new file mode 100644 index 0000000..500e418 --- /dev/null +++ b/tools/testfiles/tints4dimsCount2.ddl @@ -0,0 +1,22 @@ +HDF5 "tints4dims.h5" { +DATASET "FourDimInts" { + DATATYPE H5T_STD_U32LE + DATASPACE SIMPLE { ( 4, 6, 8, 10 ) / ( 4, 6, 8, 10 ) } + SUBSET { + START ( 0, 0, 0, 0 ); + STRIDE ( 1, 1, 1, 1 ); + COUNT ( 2, 2, 2, 2 ); + BLOCK ( 1, 1, 1, 1 ); + DATA { + (0,0,0,0): 0, 1, + (0,0,1,0): 10, 11 + (0,1,0,0): 80, 81, + (0,1,1,0): 90, 91 + (1,0,0,0): 480, 481, + (1,0,1,0): 490, 491 + (1,1,0,0): 560, 561, + (1,1,1,0): 570, 571 + } + } +} +} diff --git a/tools/testfiles/tints4dimsCountEq.ddl b/tools/testfiles/tints4dimsCountEq.ddl new file mode 100644 index 0000000..8b17bfc --- /dev/null +++ b/tools/testfiles/tints4dimsCountEq.ddl @@ -0,0 +1,30 @@ +HDF5 "tints4dims.h5" { +DATASET "FourDimInts" { + DATATYPE H5T_STD_U32LE + DATASPACE SIMPLE { ( 4, 6, 8, 10 ) / ( 4, 6, 8, 10 ) } + SUBSET { + START ( 0, 0, 0, 0 ); + STRIDE ( 2, 2, 1, 1 ); + COUNT ( 2, 2, 4, 4 ); + BLOCK ( 1, 2, 1, 1 ); + DATA { + (0,0,0,0): 0, 1, 2, 3, 80, 81, 82, 83, + (0,0,1,0): 10, 11, 12, 13, 90, 91, 92, 93, + (0,0,2,0): 20, 21, 22, 23, 100, 101, 102, 103, + (0,0,3,0): 30, 31, 32, 33, 110, 111, 112, 113 + (0,2,0,0): 160, 161, 162, 163, 240, 241, 242, 243, + (0,2,1,0): 170, 171, 172, 173, 250, 251, 252, 253, + (0,2,2,0): 180, 181, 182, 183, 260, 261, 262, 263, + (0,2,3,0): 190, 191, 192, 193, 270, 271, 272, 273 + (2,0,0,0): 960, 961, 962, 963, 1040, 1041, 1042, 1043, + (2,0,1,0): 970, 971, 972, 973, 1050, 1051, 1052, 1053, + (2,0,2,0): 980, 981, 982, 983, 1060, 1061, 1062, 1063, + (2,0,3,0): 990, 991, 992, 993, 1070, 1071, 1072, 1073 + (2,2,0,0): 1120, 1121, 1122, 1123, 1200, 1201, 1202, 1203, + (2,2,1,0): 1130, 1131, 1132, 1133, 1210, 1211, 1212, 1213, + (2,2,2,0): 1140, 1141, 1142, 1143, 1220, 1221, 1222, 1223, + (2,2,3,0): 1150, 1151, 1152, 1153, 1230, 1231, 1232, 1233 + } + } +} +} diff --git a/tools/testfiles/tints4dimsStride2.ddl b/tools/testfiles/tints4dimsStride2.ddl new file mode 100644 index 0000000..7ec98fc --- /dev/null +++ b/tools/testfiles/tints4dimsStride2.ddl @@ -0,0 +1,22 @@ +HDF5 "tints4dims.h5" { +DATASET "FourDimInts" { + DATATYPE H5T_STD_U32LE + DATASPACE SIMPLE { ( 4, 6, 8, 10 ) / ( 4, 6, 8, 10 ) } + SUBSET { + START ( 0, 0, 0, 0 ); + STRIDE ( 2, 2, 2, 2 ); + COUNT ( 2, 2, 2, 2 ); + BLOCK ( 1, 1, 1, 1 ); + DATA { + (0,0,0,0): 0, 2, + (0,0,2,0): 20, 22 + (0,2,0,0): 160, 162, + (0,2,2,0): 180, 182 + (2,0,0,0): 960, 962, + (2,0,2,0): 980, 982 + (2,2,0,0): 1120, 1122, + (2,2,2,0): 1140, 1142 + } + } +} +} diff --git a/tools/testfiles/tnbit.ddl b/tools/testfiles/tnbit.ddl index bd32eaa..fd5d1cf 100644 --- a/tools/testfiles/tnbit.ddl +++ b/tools/testfiles/tnbit.ddl @@ -11,7 +11,7 @@ DATASET "nbit" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR diff --git a/tools/testfiles/tscaleoffset.ddl b/tools/testfiles/tscaleoffset.ddl index ba49c70..a039736 100644 --- a/tools/testfiles/tscaleoffset.ddl +++ b/tools/testfiles/tscaleoffset.ddl @@ -11,7 +11,7 @@ DATASET "scaleoffset" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR diff --git a/tools/testfiles/tshuffle.ddl b/tools/testfiles/tshuffle.ddl index 5c183fe..b0477db 100644 --- a/tools/testfiles/tshuffle.ddl +++ b/tools/testfiles/tshuffle.ddl @@ -11,7 +11,7 @@ DATASET "shuffle" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR diff --git a/tools/testfiles/tszip.ddl b/tools/testfiles/tszip.ddl index 6fdd92f..06e2259 100644 --- a/tools/testfiles/tszip.ddl +++ b/tools/testfiles/tszip.ddl @@ -17,7 +17,7 @@ DATASET "szip" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR diff --git a/tools/testfiles/tuserfilter.ddl b/tools/testfiles/tuserfilter.ddl index 24745b9..f77fb17 100644 --- a/tools/testfiles/tuserfilter.ddl +++ b/tools/testfiles/tuserfilter.ddl @@ -15,7 +15,7 @@ DATASET "myfilter" { } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET - VALUE 0 + VALUE H5D_FILL_VALUE_DEFAULT } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR diff --git a/tools/testfiles/vds/a.h5 b/tools/testfiles/vds/a.h5 Binary files differnew file mode 100644 index 0000000..fa19535 --- /dev/null +++ b/tools/testfiles/vds/a.h5 diff --git a/tools/testfiles/vds/b.h5 b/tools/testfiles/vds/b.h5 Binary files differnew file mode 100644 index 0000000..08449ca --- /dev/null +++ b/tools/testfiles/vds/b.h5 diff --git a/tools/testfiles/vds/c.h5 b/tools/testfiles/vds/c.h5 Binary files differnew file mode 100644 index 0000000..ba9af30 --- /dev/null +++ b/tools/testfiles/vds/c.h5 diff --git a/tools/testfiles/vds/d.h5 b/tools/testfiles/vds/d.h5 Binary files differnew file mode 100644 index 0000000..8eceb4a --- /dev/null +++ b/tools/testfiles/vds/d.h5 diff --git a/tools/testfiles/vds/f-0.h5 b/tools/testfiles/vds/f-0.h5 Binary files differnew file mode 100644 index 0000000..242df07 --- /dev/null +++ b/tools/testfiles/vds/f-0.h5 diff --git a/tools/testfiles/vds/f-3.h5 b/tools/testfiles/vds/f-3.h5 Binary files differnew file mode 100644 index 0000000..539c1c9 --- /dev/null +++ b/tools/testfiles/vds/f-3.h5 diff --git a/tools/testfiles/vds/tvds_layout-1.ddl b/tools/testfiles/vds/tvds_layout-1.ddl index 5d8a62c..b5351f2 100644 --- a/tools/testfiles/vds/tvds_layout-1.ddl +++ b/tools/testfiles/vds/tvds_layout-1.ddl @@ -125,16 +125,10 @@ GROUP "/" { } } } - FILTERS { - NONE - } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE -9 } - ALLOCATION_TIME { - H5D_ALLOC_TIME_INCR - } DATA { (0,0,0): 10, 10, 10, 10, 10, 10, 10, 10, (0,1,0): 10, 10, 10, 10, 10, 10, 10, 10, diff --git a/tools/testfiles/vds/tvds_layout-2.ddl b/tools/testfiles/vds/tvds_layout-2.ddl index af6b718..53407c7 100644 --- a/tools/testfiles/vds/tvds_layout-2.ddl +++ b/tools/testfiles/vds/tvds_layout-2.ddl @@ -105,16 +105,10 @@ GROUP "/" { } } } - FILTERS { - NONE - } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE -9 } - ALLOCATION_TIME { - H5D_ALLOC_TIME_INCR - } DATA { (0,0,0): 10, 10, 10, 10, 10, 10, 10, 40, 40, 40, 40, 40, 40, 40, (0,1,0): 10, 10, 10, 10, 10, 10, 10, 40, 40, 40, 40, 40, 40, 40, diff --git a/tools/testfiles/vds/tvds_layout-3_1.ddl b/tools/testfiles/vds/tvds_layout-3_1.ddl index 968327d..e75fe36 100644 --- a/tools/testfiles/vds/tvds_layout-3_1.ddl +++ b/tools/testfiles/vds/tvds_layout-3_1.ddl @@ -125,16 +125,10 @@ GROUP "/" { } } } - FILTERS { - NONE - } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE -9 } - ALLOCATION_TIME { - H5D_ALLOC_TIME_INCR - } DATA { (0,0,0): -9, -9, -9, -9, -9, -9, -9, -9, (0,1,0): 10, 10, 10, 10, 10, 10, 10, 10, diff --git a/tools/testfiles/vds/tvds_layout-3_2.ddl b/tools/testfiles/vds/tvds_layout-3_2.ddl index 7e14ec2..5b63269 100644 --- a/tools/testfiles/vds/tvds_layout-3_2.ddl +++ b/tools/testfiles/vds/tvds_layout-3_2.ddl @@ -105,16 +105,10 @@ GROUP "/" { } } } - FILTERS { - NONE - } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE -9 } - ALLOCATION_TIME { - H5D_ALLOC_TIME_INCR - } DATA { (0,0,0): -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, -9, (0,0,15): -9, -9, -9, -9, diff --git a/tools/testfiles/vds/tvds_layout-4.ddl b/tools/testfiles/vds/tvds_layout-4.ddl index 018644e..a449d0c 100644 --- a/tools/testfiles/vds/tvds_layout-4.ddl +++ b/tools/testfiles/vds/tvds_layout-4.ddl @@ -25,16 +25,10 @@ GROUP "/" { } } } - FILTERS { - NONE - } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE -9 } - ALLOCATION_TIME { - H5D_ALLOC_TIME_INCR - } DATA { (0,0,0): 10, 10, 10, 10, (0,1,0): 10, 10, 10, 10, diff --git a/tools/testfiles/vds/tvds_layout-5.ddl b/tools/testfiles/vds/tvds_layout-5.ddl index b43629a..1698eb4 100644 --- a/tools/testfiles/vds/tvds_layout-5.ddl +++ b/tools/testfiles/vds/tvds_layout-5.ddl @@ -65,16 +65,10 @@ GROUP "/" { } } } - FILTERS { - NONE - } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE -9 } - ALLOCATION_TIME { - H5D_ALLOC_TIME_INCR - } DATA { (0,0,0): 10, 10, 10, 10, (0,1,0): 10, 10, 10, 10, diff --git a/tools/testfiles/vds/vds-eiger.h5 b/tools/testfiles/vds/vds-eiger.h5 Binary files differnew file mode 100644 index 0000000..23d1fd3 --- /dev/null +++ b/tools/testfiles/vds/vds-eiger.h5 diff --git a/tools/testfiles/vds/vds-first.ddl b/tools/testfiles/vds/vds-first.ddl new file mode 100644 index 0000000..97b1ecf --- /dev/null +++ b/tools/testfiles/vds/vds-first.ddl @@ -0,0 +1,210 @@ +HDF5 "vds-percival-unlim-maxmin.h5" { +GROUP "/" { + DATASET "VDS-Percival-unlim-maxmin" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 20, 10, 10 ) / ( H5S_UNLIMITED, 10, 10 ) } + DATA { + (0,0,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,1,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,2,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,3,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,4,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,5,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,6,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,7,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,8,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,9,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (1,0,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + 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{ + VIRTUAL { + SELECTION REGULAR_HYPERSLAB { + START (0,0,0) + STRIDE (5,1,1) + COUNT (H5S_UNLIMITED,1,1) + BLOCK (5,10,10) + } + } + SOURCE { + FILE "f-%b.h5" + DATASET "A" + SELECTION ALL + } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + DATA { + (0,0,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (0,1,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (0,2,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (0,3,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (0,4,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (0,5,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (0,6,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (0,7,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (0,8,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (0,9,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (1,0,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (1,1,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (1,2,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (1,3,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (1,4,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (1,5,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (1,6,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (1,7,0): 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0, 0, 0, 0, 0, + (4,2,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (4,3,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (4,4,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (4,5,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (4,6,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (4,7,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (4,8,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + (4,9,0): 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 + } + } +} +} diff --git a/tools/testfiles/vds/vds_layout-maxmin.ddl b/tools/testfiles/vds/vds_layout-maxmin.ddl new file mode 100644 index 0000000..790fc1c --- /dev/null +++ b/tools/testfiles/vds/vds_layout-maxmin.ddl @@ -0,0 +1,416 @@ +HDF5 "vds-percival-unlim-maxmin.h5" { +GROUP "/" { + DATASET "VDS-Percival-unlim-maxmin" { + DATATYPE H5T_STD_I32LE + DATASPACE SIMPLE { ( 32, 10, 10 ) / ( H5S_UNLIMITED, 10, 10 ) } + STORAGE_LAYOUT { + MAPPING 0 { + VIRTUAL { + SELECTION REGULAR_HYPERSLAB { + START (0,0,0) + STRIDE (4,1,1) + COUNT (H5S_UNLIMITED,1,1) + BLOCK (1,10,10) + } + } + SOURCE { + FILE "a.h5" + DATASET "A" + SELECTION REGULAR_HYPERSLAB { + START (0,0,0) + STRIDE (1,1,1) + COUNT (H5S_UNLIMITED,1,1) + BLOCK (1,10,10) + } + } + } + MAPPING 1 { + VIRTUAL { + SELECTION REGULAR_HYPERSLAB { + START (1,0,0) + STRIDE (4,1,1) + COUNT (H5S_UNLIMITED,1,1) + BLOCK (1,10,10) + } + } + SOURCE { + FILE "b.h5" + DATASET "B" + SELECTION REGULAR_HYPERSLAB { + START (0,0,0) + STRIDE (1,1,1) + COUNT (H5S_UNLIMITED,1,1) + BLOCK (1,10,10) + } + } + } + MAPPING 2 { + VIRTUAL { + SELECTION REGULAR_HYPERSLAB { + START (2,0,0) + STRIDE (4,1,1) + COUNT (H5S_UNLIMITED,1,1) + BLOCK (1,10,10) + } + } + SOURCE { + FILE "c.h5" + DATASET "C" + SELECTION REGULAR_HYPERSLAB { + START (0,0,0) + STRIDE (1,1,1) + COUNT (H5S_UNLIMITED,1,1) + BLOCK (1,10,10) + } + } + } + MAPPING 3 { + VIRTUAL { + SELECTION REGULAR_HYPERSLAB { + START (3,0,0) + STRIDE (4,1,1) + COUNT (H5S_UNLIMITED,1,1) + BLOCK (1,10,10) + } + } + SOURCE { + FILE "d.h5" + DATASET "D" + SELECTION REGULAR_HYPERSLAB { + START (0,0,0) + STRIDE (1,1,1) + COUNT (H5S_UNLIMITED,1,1) + BLOCK (1,10,10) + } + } + } + } + FILLVALUE { + FILL_TIME H5D_FILL_TIME_IFSET + VALUE H5D_FILL_VALUE_DEFAULT + } + DATA { + (0,0,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,1,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,2,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,3,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,4,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,5,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,6,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,7,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,8,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (0,9,0): 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, + (1,0,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + (1,1,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + (1,2,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + (1,3,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + (1,4,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + (1,5,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + (1,6,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + (1,7,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + (1,8,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + (1,9,0): 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + (2,0,0): 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, + (2,1,0): 3, 3, 3, 3, 3, 3, 3, 3, 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