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-rw-r--r--tools/h5copy/CMakeTests.cmake2
-rw-r--r--tools/h5diff/CMakeTests.cmake6
-rw-r--r--tools/h5diff/testfiles/h5diff_v1.txt2
-rw-r--r--tools/h5diff/testfiles/h5diff_v3.txt2
-rw-r--r--tools/h5dump/CMakeTests.cmake5
-rw-r--r--tools/h5dump/CMakeTestsPBITS.cmake6
-rw-r--r--tools/h5dump/CMakeTestsVDS.cmake10
-rw-r--r--tools/h5dump/CMakeTestsXML.cmake4
-rw-r--r--tools/h5ls/CMakeTests.cmake2
-rw-r--r--tools/h5ls/CMakeTestsVDS.cmake2
-rw-r--r--tools/h5repack/CMakeTests.cmake59
-rw-r--r--tools/h5repack/h5repack.sh.in131
-rw-r--r--tools/lib/h5diff_dset.c41
-rw-r--r--tools/misc/h5debug.c52
14 files changed, 258 insertions, 66 deletions
diff --git a/tools/h5copy/CMakeTests.cmake b/tools/h5copy/CMakeTests.cmake
index 9002e5a..4ef49ee 100644
--- a/tools/h5copy/CMakeTests.cmake
+++ b/tools/h5copy/CMakeTests.cmake
@@ -22,7 +22,7 @@
file (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles")
foreach (listfiles ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES})
- GET_FILENAME_COMPONENT(fname "${listfiles}" NAME)
+ get_filename_component(fname "${listfiles}" NAME)
set (dest "${PROJECT_BINARY_DIR}/testfiles/${fname}")
#message (STATUS " Copying ${listfiles}")
add_custom_command (
diff --git a/tools/h5diff/CMakeTests.cmake b/tools/h5diff/CMakeTests.cmake
index 0595edd..c815325 100644
--- a/tools/h5diff/CMakeTests.cmake
+++ b/tools/h5diff/CMakeTests.cmake
@@ -267,7 +267,7 @@
# copy test files from source to build dir
#
foreach (h5_tstfiles ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES})
- GET_FILENAME_COMPONENT(fname "${h5_tstfiles}" NAME)
+ get_filename_component(fname "${h5_tstfiles}" NAME)
set (dest "${PROJECT_BINARY_DIR}/testfiles/${fname}")
#message (STATUS " Copying ${fname}")
add_custom_command (
@@ -1115,8 +1115,10 @@ ADD_H5_TEST (h5diff_90 0 -v ${FILE2} ${FILE2})
ADD_H5_TEST (h5diff_100 1 -v ${FILE9} ${FILE10})
# 11. floating point comparison
+# double value
ADD_H5_TEST (h5diff_101 1 -v ${FILE1} ${FILE1} g1/d1 g1/d2)
+# float value
ADD_H5_TEST (h5diff_102 1 -v ${FILE1} ${FILE1} g1/fp1 g1/fp2)
# with --use-system-epsilon for double value. expect less differences
@@ -1361,7 +1363,7 @@ ADD_H5_TEST (h5diff_517 1 -v ${GRP_RECURSE1_EXT} ${GRP_RECURSE2_EXT1} /g1)
ADD_H5_TEST (h5diff_518 0 -v --follow-symlinks ${GRP_RECURSE1_EXT} ${GRP_RECURSE2_EXT1} /g1)
# ##############################################################################
-# # Exclude path (--exclude-path)
+# # Exclude objects (--exclude-path)
# ##############################################################################
#
# Same structure, same names and different value.
diff --git a/tools/h5diff/testfiles/h5diff_v1.txt b/tools/h5diff/testfiles/h5diff_v1.txt
index 31a3eae..8210cf9 100644
--- a/tools/h5diff/testfiles/h5diff_v1.txt
+++ b/tools/h5diff/testfiles/h5diff_v1.txt
@@ -7,7 +7,7 @@ file1 file2
group : </> and </>
0 differences found
dataset: </vds_dset> and </vds_dset>
-Not comparable: </vds_dset> or </vds_dset> is an empty dataset
+Warning: </vds_dset> or </vds_dset> is a virtual dataset
Not comparable: </vds_dset> has rank 3, dimensions [5x18x8], max dimensions [18446744073709551615x18x8]
and </vds_dset> has rank 3, dimensions [6x8x14], max dimensions [18446744073709551615x8x14]
0 differences found
diff --git a/tools/h5diff/testfiles/h5diff_v3.txt b/tools/h5diff/testfiles/h5diff_v3.txt
index 8c5d2a2..57af303 100644
--- a/tools/h5diff/testfiles/h5diff_v3.txt
+++ b/tools/h5diff/testfiles/h5diff_v3.txt
@@ -1,4 +1,4 @@
-Not comparable: </vds_dset> or </vds_dset> is an empty dataset
+Warning: </vds_dset> or </vds_dset> is a virtual dataset
Not comparable: </vds_dset> has rank 3, dimensions [5x18x8], max dimensions [18446744073709551615x18x8]
and </vds_dset> has rank 3, dimensions [6x8x14], max dimensions [18446744073709551615x8x14]
EXIT CODE: 0
diff --git a/tools/h5dump/CMakeTests.cmake b/tools/h5dump/CMakeTests.cmake
index 9f7e2b0..7897311 100644
--- a/tools/h5dump/CMakeTests.cmake
+++ b/tools/h5dump/CMakeTests.cmake
@@ -1141,10 +1141,10 @@
ADD_H5_TEST_N (tattr-2 0 --enable-error-stack -N /\\\\/attr1 --any_path /attr4 --any_path=/attr5 tattr.h5)
# test for header and error messages
ADD_H5ERR_MASK_TEST (tattr-3 1 --enable-error-stack --header -a /attr2 --attribute=/attr tattr.h5)
- # test for displaying attributes in shared datatype (also in group and dataset)
- ADD_H5_TEST (tnamed_dtype_attr 0 --enable-error-stack tnamed_dtype_attr.h5)
# test for displaying at least 9 attributes on root from a be machine
ADD_H5_TEST (tattr-4_be 0 --enable-error-stack tattr4_be.h5)
+ # test for displaying attributes in shared datatype (also in group and dataset)
+ ADD_H5_TEST (tnamed_dtype_attr 0 --enable-error-stack tnamed_dtype_attr.h5)
# test for displaying soft links and user-defined links
ADD_H5_TEST (tslink-1 0 --enable-error-stack tslink.h5)
@@ -1423,6 +1423,7 @@
# test for dataset region references
ADD_H5_TEST (tdatareg 0 --enable-error-stack tdatareg.h5)
ADD_H5ERR_MASK_TEST (tdataregR 0 --enable-error-stack -R tdatareg.h5)
+ ADD_H5_TEST (tattrreg 0 --enable-error-stack tattrreg.h5)
ADD_H5ERR_MASK_TEST (tattrregR 0 -R --enable-error-stack tattrreg.h5)
ADD_H5_EXPORT_TEST (tbinregR tdatareg.h5 0 --enable-error-stack -d /Dataset1 -s 0 -R -y -o)
diff --git a/tools/h5dump/CMakeTestsPBITS.cmake b/tools/h5dump/CMakeTestsPBITS.cmake
index e76fa0e..745d5b1 100644
--- a/tools/h5dump/CMakeTestsPBITS.cmake
+++ b/tools/h5dump/CMakeTestsPBITS.cmake
@@ -86,7 +86,7 @@
)
foreach (pbits_h5_file ${HDF5_REFERENCE_TEST_PBITS})
- GET_FILENAME_COMPONENT(fname "${pbits_h5_file}" NAME)
+ get_filename_component(fname "${pbits_h5_file}" NAME)
set (dest "${PROJECT_BINARY_DIR}/testfiles/pbits/${fname}")
#message (STATUS " Copying ${pbits_h5_file}")
add_custom_command (
@@ -99,7 +99,7 @@
foreach (ddl_pbits ${HDF5_REFERENCE_PBITS})
- GET_FILENAME_COMPONENT(fname "${ddl_pbits}" NAME)
+ get_filename_component(fname "${ddl_pbits}" NAME)
set (ddldest "${PROJECT_BINARY_DIR}/testfiles/pbits/${fname}")
#message (STATUS " Copying ${ddl_pbits}")
add_custom_command (
@@ -111,7 +111,7 @@
endforeach (ddl_pbits ${HDF5_REFERENCE_PBITS})
foreach (ddl_pbits ${HDF5_ERROR_REFERENCE_PBITS})
- GET_FILENAME_COMPONENT(fname "${ddl_pbits}" NAME)
+ get_filename_component(fname "${ddl_pbits}" NAME)
set (ddldest "${PROJECT_BINARY_DIR}/testfiles/pbits/${fname}")
#message (STATUS " Copying ${ddl_pbits}")
add_custom_command (
diff --git a/tools/h5dump/CMakeTestsVDS.cmake b/tools/h5dump/CMakeTestsVDS.cmake
index cc68896..dcb90e0 100644
--- a/tools/h5dump/CMakeTestsVDS.cmake
+++ b/tools/h5dump/CMakeTestsVDS.cmake
@@ -65,7 +65,7 @@
)
foreach (vds_h5_file ${HDF5_REFERENCE_TEST_VDS})
- GET_FILENAME_COMPONENT(fname "${vds_h5_file}" NAME)
+ get_filename_component(fname "${vds_h5_file}" NAME)
set (dest "${PROJECT_BINARY_DIR}/testfiles/vds/${fname}")
#message (STATUS " Copying ${vds_h5_file}")
add_custom_command (
@@ -78,7 +78,7 @@
foreach (ddl_vds ${HDF5_REFERENCE_VDS})
- GET_FILENAME_COMPONENT(fname "${ddl_vds}" NAME)
+ get_filename_component(fname "${ddl_vds}" NAME)
set (ddldest "${PROJECT_BINARY_DIR}/testfiles/vds/${fname}")
#message (STATUS " Copying ${ddl_vds}")
add_custom_command (
@@ -90,7 +90,7 @@
endforeach (ddl_vds ${HDF5_REFERENCE_VDS})
foreach (ddl_vds ${HDF5_ERROR_REFERENCE_VDS})
- GET_FILENAME_COMPONENT(fname "${ddl_vds}" NAME)
+ get_filename_component(fname "${ddl_vds}" NAME)
set (ddldest "${PROJECT_BINARY_DIR}/testfiles/vds/${fname}")
#message (STATUS " Copying ${ddl_vds}")
add_custom_command (
@@ -111,7 +111,7 @@
# If using memchecker add tests without using scripts
if (HDF5_ENABLE_USING_MEMCHECKER)
add_test (NAME H5DUMP-${resultfile} COMMAND $<TARGET_FILE:h5dump> ${ARGN})
- set_tests_properties (H5DUMP-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfilesvds")
+ set_tests_properties (H5DUMP-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/vds")
if (NOT ${resultcode} STREQUAL "0")
set_tests_properties (H5DUMP-${resultfile} PROPERTIES WILL_FAIL "true")
endif (NOT ${resultcode} STREQUAL "0")
@@ -144,7 +144,7 @@
# If using memchecker add tests without using scripts
if (HDF5_ENABLE_USING_MEMCHECKER)
add_test (NAME H5DUMP-${resultfile} COMMAND $<TARGET_FILE:h5dump> -p ${ARGN})
- set_tests_properties (H5DUMP-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfilesvds")
+ set_tests_properties (H5DUMP-${resultfile} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles/vds")
if (NOT ${resultcode} STREQUAL "0")
set_tests_properties (H5DUMP-${resultfile} PROPERTIES WILL_FAIL "true")
endif (NOT ${resultcode} STREQUAL "0")
diff --git a/tools/h5dump/CMakeTestsXML.cmake b/tools/h5dump/CMakeTestsXML.cmake
index 0a667c4..fc6cae7 100644
--- a/tools/h5dump/CMakeTestsXML.cmake
+++ b/tools/h5dump/CMakeTestsXML.cmake
@@ -128,7 +128,7 @@
)
foreach (tst_xml_h5_file ${HDF5_XML_REFERENCE_TEST_FILES})
- GET_FILENAME_COMPONENT(fname "${tst_xml_h5_file}" NAME)
+ get_filename_component(fname "${tst_xml_h5_file}" NAME)
set (dest "${PROJECT_BINARY_DIR}/testfiles/xml/${fname}")
#message (STATUS " Copying ${tst_xml_h5_file}")
add_custom_command (
@@ -140,7 +140,7 @@
endforeach (tst_xml_h5_file ${HDF5_XML_REFERENCE_TEST_FILES})
foreach (tst_xml_other_file ${HDF5_XML_REFERENCE_FILES})
- GET_FILENAME_COMPONENT(fname "${tst_xml_other_file}" NAME)
+ get_filename_component(fname "${tst_xml_other_file}" NAME)
set (dest "${PROJECT_BINARY_DIR}/testfiles/xml/${fname}")
#message (STATUS " Copying ${tst_xml_other_file}")
add_custom_command (
diff --git a/tools/h5ls/CMakeTests.cmake b/tools/h5ls/CMakeTests.cmake
index a42fa17..c5aff21 100644
--- a/tools/h5ls/CMakeTests.cmake
+++ b/tools/h5ls/CMakeTests.cmake
@@ -96,7 +96,7 @@
# copy the list of test files
foreach (listfiles ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES})
- GET_FILENAME_COMPONENT(fname "${listfiles}" NAME)
+ get_filename_component(fname "${listfiles}" NAME)
set (dest "${PROJECT_BINARY_DIR}/testfiles/${fname}")
#message (STATUS " Copying ${listfiles} to ${dest}")
add_custom_command (
diff --git a/tools/h5ls/CMakeTestsVDS.cmake b/tools/h5ls/CMakeTestsVDS.cmake
index 1ef3f20..3e85803 100644
--- a/tools/h5ls/CMakeTestsVDS.cmake
+++ b/tools/h5ls/CMakeTestsVDS.cmake
@@ -47,7 +47,7 @@
# copy the list of test files
foreach (listfiles ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES})
- GET_FILENAME_COMPONENT(fname "${listfiles}" NAME)
+ get_filename_component(fname "${listfiles}" NAME)
set (dest "${PROJECT_BINARY_DIR}/testfiles/vds/${fname}")
#message (STATUS " Copying ${listfiles} to ${dest}")
add_custom_command (
diff --git a/tools/h5repack/CMakeTests.cmake b/tools/h5repack/CMakeTests.cmake
index 8aee98f..ba59bd2 100644
--- a/tools/h5repack/CMakeTests.cmake
+++ b/tools/h5repack/CMakeTests.cmake
@@ -118,7 +118,7 @@
)
foreach (h5_file ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES})
- GET_FILENAME_COMPONENT(fname "${h5_file}" NAME)
+ get_filename_component(fname "${h5_file}" NAME)
set (dest "${PROJECT_BINARY_DIR}/testfiles/${fname}")
#message (STATUS " Copying ${h5_file}")
add_custom_command (
@@ -345,6 +345,41 @@
endif ("${testtype}" STREQUAL "SKIP")
ENDMACRO (ADD_H5_VERIFY_TEST)
+ MACRO (ADD_H5_VERIFY_VDS testname testtype resultcode testfile testdset testfilter)
+ if ("${testtype}" STREQUAL "SKIP")
+ if (NOT HDF5_ENABLE_USING_MEMCHECKER)
+ add_test (
+ NAME H5REPACK_VERIFY_LAYOUT-${testname}-SKIPPED
+ COMMAND ${CMAKE_COMMAND} -E echo "SKIP -d ${testdset} -pH ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile}"
+ )
+ endif (NOT HDF5_ENABLE_USING_MEMCHECKER)
+ else ("${testtype}" STREQUAL "SKIP")
+ if (NOT HDF5_ENABLE_USING_MEMCHECKER)
+ add_test (
+ NAME H5REPACK_VERIFY_LAYOUT-${testname}
+ COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}
+ )
+ set_tests_properties (H5REPACK_VERIFY_LAYOUT-${testname} PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles")
+ if (NOT "${last_test}" STREQUAL "")
+ set_tests_properties (H5REPACK_VERIFY_LAYOUT-${testname} PROPERTIES DEPENDS ${last_test})
+ endif (NOT "${last_test}" STREQUAL "")
+ add_test (
+ NAME H5REPACK_VERIFY_LAYOUT-${testname}_DMP
+ COMMAND "${CMAKE_COMMAND}"
+ -D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
+ -D "TEST_ARGS:STRING=-d;${testdset};-p;out-${testname}.${testfile}"
+ -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles"
+ -D "TEST_OUTPUT=${testfile}-${testname}-v.out"
+ -D "TEST_EXPECT=${resultcode}"
+ -D "TEST_REFERENCE=${testfile}-${testname}-v.ddl"
+ -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
+ )
+ set_tests_properties (H5REPACK_VERIFY_LAYOUT-${testname}_DMP PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles")
+ set_tests_properties (H5REPACK_VERIFY_LAYOUT-${testname}_DMP PROPERTIES DEPENDS H5REPACK_VERIFY_LAYOUT-${testname})
+ endif (NOT HDF5_ENABLE_USING_MEMCHECKER)
+ endif ("${testtype}" STREQUAL "SKIP")
+ ENDMACRO (ADD_H5_VERIFY_VDS)
+
MACRO (ADD_H5_TEST_META testname testfile)
add_test (
NAME H5REPACK_META-${testname}_N
@@ -1053,20 +1088,22 @@
#########################################################
# layout options
#########################################################
- ADD_H5_VERIFY_TEST (vds_dset_conti "TEST" 0 ${FILEV1} vds_dset CONTIGUOUS -l vds_dset:CONTI)
- ADD_H5_VERIFY_TEST (vds_null_conti "TEST" 1 ${FILEV2} null CONTIGUOUS -l CONTI)
- ADD_H5_VERIFY_TEST (vds_dset_compa "TEST" 0 ${FILEV1} vds_dset COMPACT -l vds_dset:COMPA)
- ADD_H5_VERIFY_TEST (vds_null_compa "TEST" 1 ${FILEV2} null COMPACT -l COMPA)
+# skip tests because of HDFFV-9756
+ ADD_H5_VERIFY_VDS (vds_dset_conti "SKIP" 0 ${FILEV1} vds_dset CONTIGUOUS -l vds_dset:CONTI)
+ ADD_H5_VERIFY_VDS (vds_null_conti "SKIP" 1 ${FILEV2} null CONTIGUOUS -l CONTI)
+ ADD_H5_VERIFY_VDS (vds_dset_compa "SKIP" 0 ${FILEV1} vds_dset COMPACT -l vds_dset:COMPA)
+ ADD_H5_VERIFY_VDS (vds_null_compa "SKIP" 1 ${FILEV2} null COMPACT -l COMPA)
################################################################
# layout conversions
###############################################################
- ADD_H5_VERIFY_TEST (vds_compa_conti "TEST" 0 ${FILEV4} vds_dset CONTIGUOUS -l vds_dset:CONTI)
- ADD_H5_VERIFY_TEST (vds_compa_compa "TEST" 0 ${FILEV4} vds_dset COMPACT -l vds_dset:COMPA)
- ADD_H5_VERIFY_TEST (vds_conti_compa "TEST" 0 ${FILEV4} vds_dset COMPACT -l vds_dset:COMPA)
- ADD_H5_VERIFY_TEST (vds_conti_conti "TEST" 0 ${FILEV4} vds_dset CONTIGUOUS -l vds_dset:CONTI)
- ADD_H5_VERIFY_TEST (vds_compa "TEST" 0 ${FILEV4} vds_dset COMPACT -l vds_dset:COMPA)
- ADD_H5_VERIFY_TEST (vds_conti "TEST" 0 ${FILEV4} vds_dset CONTIGUOUS -l vds_dset:CONTI)
+# skip tests because of HDFFV-9756
+ ADD_H5_VERIFY_VDS (vds_compa_conti "SKIP" 0 ${FILEV4} vds_dset CONTIGUOUS -l vds_dset:CONTI)
+ ADD_H5_VERIFY_VDS (vds_compa_compa "SKIP" 0 ${FILEV4} vds_dset COMPACT -l vds_dset:COMPA)
+ ADD_H5_VERIFY_VDS (vds_conti_compa "SKIP" 0 ${FILEV4} vds_dset COMPACT -l vds_dset:COMPA)
+ ADD_H5_VERIFY_VDS (vds_conti_conti "SKIP" 0 ${FILEV4} vds_dset CONTIGUOUS -l vds_dset:CONTI)
+ ADD_H5_VERIFY_VDS (vds_compa "SKIP" 0 ${FILEV4} vds_dset COMPACT -l vds_dset:COMPA)
+ ADD_H5_VERIFY_VDS (vds_conti "SKIP" 0 ${FILEV4} vds_dset CONTIGUOUS -l vds_dset:CONTI)
##############################################################################
### P L U G I N T E S T S
diff --git a/tools/h5repack/h5repack.sh.in b/tools/h5repack/h5repack.sh.in
index 24298d0..74da4c0 100644
--- a/tools/h5repack/h5repack.sh.in
+++ b/tools/h5repack/h5repack.sh.in
@@ -39,6 +39,8 @@ H5DUMP=../h5dump/h5dump # The h5dump tool name
H5DUMP_BIN=`pwd`/$H5DUMP # The path of the h5dump tool binary
RM='rm -rf'
+CMP='cmp'
+DIFF='diff -c'
GREP='grep'
CP='cp'
DIRNAME='dirname'
@@ -171,7 +173,7 @@ COPY_TESTFILES_TO_TESTDIR()
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $TESTDIR
+ $CP -f $tstfile $TESTDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
@@ -188,7 +190,7 @@ CLEAN_TESTFILES_AND_TESTDIR()
# skip rm if srcdir is same as destdir
# this occurs when build/test performed in source dir and
# make cp fail
- SDIR=`$DIRNAME $tstfile`
+ SDIR=`$DIRNAME $SRC_H5REPACK_TESTFILES/h5repack-help.txt`
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
@@ -321,6 +323,70 @@ VERIFY_LAYOUT_DSET()
rm -f $layoutfile
}
+#------------------------------------------
+# Verifying layouts of a dataset
+VERIFY_LAYOUT_VDS()
+{
+ layoutfile=layout-$1.$2
+ dset=$3
+ expectlayout=$4
+ infile=$2
+ outfile=out-$1.$2
+
+ expect="$TESTDIR/$2-$1-v.ddl"
+ actual="$TESTDIR/$2-$1-v.out"
+ actual_err="$TESTDIR/$2-$1-v.err"
+
+ shift
+ shift
+ shift
+ shift
+
+ TESTING $H5REPACK $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+ )
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ fi
+
+ #---------------------------------
+ # check the layout from a dataset
+ VERIFY "a dataset layout"
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5DUMP_BIN -d $dset -p $outfile
+ ) >$actual 2>$actual_err
+
+ cat $actual_err >> $actual
+
+ if [ ! -f $expect ]; then
+ # Create the expect file if it doesn't yet exist.
+ echo " CREATED"
+ cp $actual $expect
+ elif $CMP $expect $actual > /dev/null 2>&1 ; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.ddl) differs from actual result (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $caseless $expect $actual |sed 's/^/ /'
+ fi
+
+ # Clean up output file
+ if test -z "$HDF5_NOCLEANUP"; then
+ rm -f $actual $actual_err
+ fi
+
+ # clean up tmp files
+ rm -f $outfile
+}
+
#----------------------------------------
# Verifying layouts from entire file
VERIFY_LAYOUT_ALL()
@@ -469,11 +535,11 @@ TOOLTEST1()
)
RET=$?
if [ $RET != 0 ] ; then
- echo "*FAILED*"
- nerrors="`expr $nerrors + 1`"
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
else
- echo " PASSED"
- DIFFTEST $infile $outfile
+ echo " PASSED"
+ DIFFTEST $infile $outfile
fi
rm -f $outfile
}
@@ -500,11 +566,11 @@ TOOLTESTV()
) >$actual 2>$actual_err
RET=$?
if [ $RET != 0 ] ; then
- echo "*FAILED*"
- nerrors="`expr $nerrors + 1`"
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
else
- echo " PASSED"
- DIFFTEST $infile $outfile
+ echo " PASSED"
+ DIFFTEST $infile $outfile
fi
# display output compare
@@ -634,11 +700,11 @@ TOOLTEST_META()
# verify sizes.
MESSAGE "Verify the sizes of both output files ($size1 vs $size2)"
if [ $size1 -lt $size2 ]; then
- # pass
- echo " PASSED"
+ # pass
+ echo " PASSED"
else
- #fail
- echo "*FAILED*"
+ #fail
+ echo "*FAILED*"
nerrors="`expr $nerrors + 1`"
fi
@@ -711,7 +777,7 @@ USE_FILTER_SZIP_ENCODER=`$RUNSERIAL $H5DETECTSZIP_BIN`
fi
##############################################################################
-### T H E T E S T S
+### T H E T E S T S
##############################################################################
# prepare for test
COPY_TESTFILES_TO_TESTDIR
@@ -1057,7 +1123,7 @@ TOOLTEST add_alignment $arg
# Check repacking file with old version of layout message (should get upgraded
# to new version and be readable, etc.)
-TOOLTEST pgrade_layout h5repack_layouto.h5
+TOOLTEST upgrade_layout h5repack_layouto.h5
# test for datum size > H5TOOLS_MALLOCSIZE
TOOLTEST gt_mallocsize h5repack_objs.h5 -f GZIP=1
@@ -1091,20 +1157,33 @@ TOOLTEST_META meta_long h5repack_layout.h5 --metadata_block_size=8192
#########################################################
# layout options
#########################################################
-VERIFY_LAYOUT_DSET vds_dset_conti 1_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
-VERIFY_LAYOUT_ALL vds_null_conti 2_vds.h5 CONTIGUOUS -l CONTI
-VERIFY_LAYOUT_DSET vds_dset_compa 1_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
-VERIFY_LAYOUT_ALL vds_null_compa 2_vds.h5 COMPACT -l COMPA
+# skip tests because of HDFFV-9756
+#VERIFY_LAYOUT_VDS vds_dset_conti 1_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
+#VERIFY_LAYOUT_ALL vds_null_conti 2_vds.h5 CONTIGUOUS -l CONTI
+# skip test because of HDFFV-9756
+#VERIFY_LAYOUT_VDS vds_dset_compa 1_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
+#VERIFY_LAYOUT_ALL vds_null_compa 2_vds.h5 COMPACT -l COMPA
+SKIP vds_dset_conti 1_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
+SKIP vds_null_conti 2_vds.h5 CONTIGUOUS -l CONTI
+SKIP vds_dset_compa 1_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
+SKIP vds_null_compa 2_vds.h5 COMPACT -l COMPA
################################################################
# layout conversions
###############################################################
-VERIFY_LAYOUT_DSET vds_compa_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
-VERIFY_LAYOUT_DSET vds_compa_compa 4_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
-VERIFY_LAYOUT_DSET vds_conti_compa 4_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
-VERIFY_LAYOUT_DSET vds_conti_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
-VERIFY_LAYOUT_DSET vds_compa 4_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
-VERIFY_LAYOUT_DSET vds_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
+# skip tests because of HDFFV-9756
+#VERIFY_LAYOUT_VDS vds_compa_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
+#VERIFY_LAYOUT_VDS vds_compa_compa 4_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
+#VERIFY_LAYOUT_VDS vds_conti_compa 4_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
+#VERIFY_LAYOUT_VDS vds_conti_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
+#VERIFY_LAYOUT_VDS vds_compa 4_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
+#VERIFY_LAYOUT_VDS vds_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
+SKIP vds_compa_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
+SKIP vds_compa_compa 4_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
+SKIP vds_conti_compa 4_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
+SKIP vds_conti_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
+SKIP vds_compa 4_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
+SKIP vds_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
# Clean up temporary files/directories
CLEAN_TESTFILES_AND_TESTDIR
diff --git a/tools/lib/h5diff_dset.c b/tools/lib/h5diff_dset.c
index b8dd0e8..63f1483 100644
--- a/tools/lib/h5diff_dset.c
+++ b/tools/lib/h5diff_dset.c
@@ -71,9 +71,7 @@ hsize_t diff_dataset( hid_t file1_id,
if((dcpl1 = H5Dget_create_plist(did1)) < 0)
goto error;
if((dcpl2 = H5Dget_create_plist(did2)) < 0)
- {
goto error;
- }
/*-------------------------------------------------------------------------
* check if the dataset creation property list has filters that
@@ -191,6 +189,10 @@ hsize_t diff_datasetid( hid_t did1,
hid_t f_tid2=-1;
hid_t m_tid1=-1;
hid_t m_tid2=-1;
+ hid_t dcpl1 = -1;
+ hid_t dcpl2 = -1;
+ H5D_layout_t stl1 = -1;
+ H5D_layout_t stl2 = -1;
size_t m_size1;
size_t m_size2;
H5T_sign_t sign1;
@@ -260,6 +262,21 @@ hsize_t diff_datasetid( hid_t did1,
goto error;
}
+
+ /*-------------------------------------------------------------------------
+ * get the storage layout type
+ *-------------------------------------------------------------------------
+ */
+ if((dcpl1 = H5Dget_create_plist(did1)) < 0)
+ goto error;
+ if((dcpl2 = H5Dget_create_plist(did2)) < 0)
+ goto error;
+
+ if((stl1 = H5Pget_layout(dcpl1)) < 0)
+ goto error;
+ if((stl2 = H5Pget_layout(dcpl2)) < 0)
+ goto error;
+
/*-------------------------------------------------------------------------
* check for empty datasets
*-------------------------------------------------------------------------
@@ -271,10 +288,18 @@ hsize_t diff_datasetid( hid_t did1,
if (storage_size1==0 || storage_size2==0)
{
- if ( (options->m_verbose||options->m_list_not_cmp) && obj1_name && obj2_name)
- parallel_print("Not comparable: <%s> or <%s> is an empty dataset\n", obj1_name, obj2_name);
- can_compare=0;
- options->not_cmp=1;
+ if (stl1==H5D_VIRTUAL || stl2==H5D_VIRTUAL)
+ {
+ if ( (options->m_verbose||options->m_list_not_cmp) && obj1_name && obj2_name)
+ parallel_print("Warning: <%s> or <%s> is a virtual dataset\n", obj1_name, obj2_name);
+ }
+ else
+ {
+ if ( (options->m_verbose||options->m_list_not_cmp) && obj1_name && obj2_name)
+ parallel_print("Not comparable: <%s> or <%s> is an empty dataset\n", obj1_name, obj2_name);
+ can_compare=0;
+ options->not_cmp=1;
+ }
}
/*-------------------------------------------------------------------------
@@ -329,7 +354,7 @@ hsize_t diff_datasetid( hid_t did1,
parallel_print("Not comparable: <%s> has sign %s ", obj1_name, get_sign(sign1));
parallel_print("and <%s> has sign %s\n", obj2_name, get_sign(sign2));
}
-
+
can_compare=0;
options->not_cmp=1;
}
@@ -369,7 +394,7 @@ hsize_t diff_datasetid( hid_t did1,
h5difftrace("upgrade the smaller memory size?\n");
if (FAIL == match_up_memsize (f_tid1, f_tid2,
- &m_tid1, &m_tid2,
+ &m_tid1, &m_tid2,
&m_size1, &m_size2))
goto error;
diff --git a/tools/misc/h5debug.c b/tools/misc/h5debug.c
index cd1fdca..4df501a 100644
--- a/tools/misc/h5debug.c
+++ b/tools/misc/h5debug.c
@@ -121,6 +121,14 @@ get_H5B2_class(const uint8_t *sig)
cls = H5A_BT2_CORDER;
break;
+ case H5B2_CDSET_ID:
+ cls = H5D_BT2;
+ break;
+
+ case H5B2_CDSET_FILT_ID:
+ cls = H5D_BT2_FILT;
+ break;
+
case H5B2_TEST2_ID:
cls = H5B2_TEST2;
break;
@@ -161,6 +169,14 @@ get_H5EA_class(const uint8_t *sig)
cls = H5EA_CLS_TEST;
break;
+ case H5EA_CLS_CHUNK_ID:
+ cls = H5EA_CLS_CHUNK;
+ break;
+
+ case H5EA_CLS_FILT_CHUNK_ID:
+ cls = H5EA_CLS_FILT_CHUNK;
+ break;
+
case H5EA_NUM_CLS_ID:
default:
HDfprintf(stderr, "Unknown extensible array class %u\n", (unsigned)(clsid));
@@ -197,6 +213,14 @@ get_H5FA_class(const uint8_t *sig)
cls = H5FA_CLS_TEST;
break;
+ case H5FA_CLS_CHUNK_ID:
+ cls = H5FA_CLS_CHUNK;
+ break;
+
+ case H5FA_CLS_FILT_CHUNK_ID:
+ cls = H5FA_CLS_FILT_CHUNK;
+ break;
+
case H5FA_NUM_CLS_ID:
default:
HDfprintf(stderr, "Unknown fixed array class %u\n", (unsigned)(clsid));
@@ -402,6 +426,13 @@ main(int argc, char *argv[])
const H5B2_class_t *cls = get_H5B2_class(sig);
HDassert(cls);
+ if((cls == H5D_BT2 || cls == H5D_BT2_FILT) && extra == 0) {
+ HDfprintf(stderr, "ERROR: Need v2 B-tree header address and object header address containing the layout message in order to dump header\n");
+ HDfprintf(stderr, "v2 B-tree hdr usage:\n");
+ HDfprintf(stderr, "\th5debug <filename> <v2 B-tree header address> <object header address>\n");
+ HDexit(4);
+ } /* end if */
+
status = H5B2__hdr_debug(f, H5AC_ind_read_dxpl_id, addr, stdout, 0, VCOL, cls, (haddr_t)extra);
} else if(!HDmemcmp(sig, H5B2_INT_MAGIC, (size_t)H5_SIZEOF_MAGIC)) {
@@ -412,7 +443,16 @@ main(int argc, char *argv[])
HDassert(cls);
/* Check for enough valid parameters */
- if(extra == 0 || extra2 == 0 || extra3 == 0) {
+ if((cls == H5D_BT2 || cls == H5D_BT2_FILT) &&
+ (extra == 0 || extra2 == 0 || extra3 == 0 || extra4 == 0)) {
+
+ fprintf(stderr, "ERROR: Need v2 B-tree header address, the node's number of records, depth, and object header address containing the layout message in order to dump internal node\n");
+ fprintf(stderr, "NOTE: Leaf nodes are depth 0, the internal nodes above them are depth 1, etc.\n");
+ fprintf(stderr, "v2 B-tree internal node usage:\n");
+ fprintf(stderr, "\th5debug <filename> <internal node address> <v2 B-tree header address> <number of records> <depth> <object header address>\n");
+ HDexit(4);
+
+ } else if(extra == 0 || extra2 == 0 || extra3 == 0) {
HDfprintf(stderr, "ERROR: Need v2 B-tree header address and the node's number of records and depth in order to dump internal node\n");
HDfprintf(stderr, "NOTE: Leaf nodes are depth 0, the internal nodes above them are depth 1, etc.\n");
HDfprintf(stderr, "v2 B-tree internal node usage:\n");
@@ -430,7 +470,15 @@ main(int argc, char *argv[])
HDassert(cls);
/* Check for enough valid parameters */
- if(extra == 0 || extra2 == 0) {
+ if((cls == H5D_BT2 || cls == H5D_BT2_FILT) &&
+ (extra == 0 || extra2 == 0 || extra3 == 0 )) {
+
+ fprintf(stderr, "ERROR: Need v2 B-tree header address, number of records, and object header address containing the layout message in order to dump leaf node\n");
+ fprintf(stderr, "v2 B-tree leaf node usage:\n");
+ fprintf(stderr, "\th5debug <filename> <leaf node address> <v2 B-tree header address> <number of records> <object header address>\n");
+ HDexit(4);
+
+ } else if(extra == 0 || extra2 == 0) {
HDfprintf(stderr, "ERROR: Need v2 B-tree header address and number of records in order to dump leaf node\n");
HDfprintf(stderr, "v2 B-tree leaf node usage:\n");
HDfprintf(stderr, "\th5debug <filename> <leaf node address> <v2 B-tree header address> <number of records>\n");
generated by cgit v0.12 at 2024-09-30 03:02:28 (GMT)