diff options
Diffstat (limited to 'tools')
64 files changed, 1345 insertions, 18813 deletions
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then \ - cmd=$(@:.chkexe_=);\ - tname=`basename $$cmd`;\ - chkname=`basename $(@:.chkexe_=.chkexe)`;\ - log=`basename $(@:.chkexe_=.chklog)`; \ - echo "============================"; \ - if $(top_srcdir)/bin/newer $${chkname} $$cmd $(SCRIPT_DEPEND); then \ - echo "No need to test $${tname} again."; \ - else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - else \ - echo "Testing $${tname} $(TEST_FLAGS)"; \ - echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)" \ - srcdir="$(srcdir)" \ - $(TIME) $(SHELL) $$cmd $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $${chkname} || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ - echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ - fi; \ - echo "============================"; \ - fi - -# Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(chk_TESTS) - @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ - echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ - fi - @if test -n "$(TEST_PROG_PARA)"; then \ - echo "**** Hint ****"; \ - echo "Parallel test files reside in the current directory" \ - "by default."; \ - echo "Set HDF5_PARAPREFIX to use another directory. E.g.,"; \ - echo " HDF5_PARAPREFIX=/PFS/user/me"; \ - echo " export HDF5_PARAPREFIX"; \ - echo " make check"; \ - echo "**** end of Hint ****"; \ - fi - @for test in $(TEST_PROG_PARA) dummy; do \ - if test $$test != dummy; then \ - $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \ - RUNEXEC="$(RUNPARALLEL)" || exit 1; \ - fi; \ - done - @for test in $(TEST_SCRIPT_PARA) dummy; do \ - if test $$test != dummy; then \ - $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \ - fi; \ - done - @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ - echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\ - fi - -# Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(chk_TESTS) - @for vfd in $(VFD_LIST) dummy; do \ - if test $$vfd != dummy; then \ - echo "============================"; \ - echo "Testing Virtual File Driver $$vfd"; \ - echo "============================"; \ - $(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1; \ - HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ - fi; \ - done - -# Tell versions [3.59,3.63) of GNU make to not export all variables. -# Otherwise a system limit (for SysV at least) may be exceeded. -.NOEXPORT: diff --git a/tools/h5diff/h5diffgentest.c b/tools/h5diff/h5diffgentest.c index cfaffe6..8f92660 100644 --- a/tools/h5diff/h5diffgentest.c +++ b/tools/h5diff/h5diffgentest.c @@ -1014,14 +1014,14 @@ int test_attributes(const char *file, static int test_attributes_verbose_level(const char *fname1, const char *fname2) { herr_t status = SUCCEED; - hid_t fid1, fid2; - hid_t f1_gid, f2_gid; - hid_t f1_gid2, f2_gid2; - hid_t f1_gid3, f2_gid3; - hid_t f1_gid4, f2_gid4; - hid_t f1_did, f2_did; - hid_t f1_sid, f2_sid; - hid_t f1_tid, f2_tid; + hid_t fid1 = -1, fid2 = -1; + hid_t f1_gid = -1, f2_gid = -1; + hid_t f1_gid2 = -1, f2_gid2 = -1; + hid_t f1_gid3 = -1, f2_gid3 = -1; + hid_t f1_gid4 = -1, f2_gid4 = -1; + hid_t f1_did = -1, f2_did = -1; + hid_t f1_sid = -1, f2_sid = -1; + hid_t f1_tid = -1, f2_tid = -1; /* dset */ hsize_t dset_dims[1]={3}; int dset_data[3] = {0,1,2}; @@ -1252,9 +1252,9 @@ out: /*----------------------------------------------------------------------- * Close *-----------------------------------------------------------------------*/ - if(fid1) + if(fid1 > 0) H5Fclose(fid1); - if(fid2) + if(fid2 > 0) H5Fclose(fid2); if(f1_gid > 0) H5Gclose(f1_gid); @@ -1276,13 +1276,13 @@ out: H5Dclose(f1_did); if(f2_did > 0) H5Dclose(f2_did); - if(f1_sid >0) + if(f1_sid > 0) H5Sclose(f1_sid); - if(f2_sid >0) + if(f2_sid > 0) H5Sclose(f2_sid); - if(f1_tid >0) + if(f1_tid > 0) H5Tclose(f1_tid); - if(f2_tid >0) + if(f2_tid > 0) H5Tclose(f2_tid); return status; @@ -2797,15 +2797,18 @@ out: #define GRP_R_DSETNAME2 "dset2" static int test_group_recurse2(void) { - hid_t fileid1; - hid_t grp1=0, grp2; - hid_t grp3=0; - hid_t grp4=0; - hid_t dset1, dset2; - hid_t datatype, dataspace; /* handles */ - hid_t fileid2; - hid_t fileid3; - hid_t fileid4; + hid_t fileid1 = -1; + hid_t grp1 = -1; + hid_t grp2 = -1; + hid_t grp3 = -1; + hid_t grp4 = -1; + hid_t dset1 = -1; + hid_t dset2 = -1; + hid_t datatype = -1; + hid_t dataspace = -1; + hid_t fileid2 = -1; + hid_t fileid3 = -1; + hid_t fileid4 = -1; hsize_t dimsf[2]; /* dataset dimensions */ herr_t status=0; int data1[4][2] = {{0,0},{1,1},{2,2},{3,3}}; @@ -3098,12 +3101,18 @@ out: /* * Close/release resources. */ - H5Sclose(dataspace); - H5Tclose(datatype); - H5Fclose(fileid1); - H5Fclose(fileid2); - H5Fclose(fileid3); - H5Fclose(fileid4); + if(dataspace > 0) + H5Sclose(dataspace); + if(datatype > 0) + H5Tclose(datatype); + if(fileid1 > 0) + H5Fclose(fileid1); + if(fileid2 > 0) + H5Fclose(fileid2); + if(fileid3 > 0) + H5Fclose(fileid3); + if(fileid4 > 0) + H5Fclose(fileid4); return status; } @@ -3506,8 +3515,8 @@ static int test_comp_vlen_strings(const char *fname1, const char *grp_name, int { int i; - hid_t fid1; /* file id */ - hid_t gid; + hid_t fid1 = -1; /* file id */ + hid_t gid = -1; /* compound1 datatype */ typedef struct comp1_t @@ -4153,60 +4162,60 @@ out: /*----------------------------------------------------------------------- * Close *-----------------------------------------------------------------------*/ - if(fid1) + if(fid1 > 0) H5Fclose(fid1); - if(gid) + if(gid > 0) H5Gclose(gid); /* vlen string */ - if(tid_vlen_str) + if(tid_vlen_str > 0) H5Tclose(tid_vlen_str); - if(sid_vlen_str) + if(sid_vlen_str > 0) H5Sclose(sid_vlen_str); /* fixed len string */ - if(tid_fixlen_str) + if(tid_fixlen_str > 0) H5Tclose(tid_fixlen_str); - if(sid_fixlen_str) + if(sid_fixlen_str > 0) H5Sclose(sid_fixlen_str); /* vlen string array */ - if(tid_vlen_str_array_pre) + if(tid_vlen_str_array_pre > 0) H5Tclose(tid_vlen_str_array_pre); - if(tid_vlen_str_array) + if(tid_vlen_str_array > 0) H5Tclose(tid_vlen_str_array); - if(sid_vlen_str_array) + if(sid_vlen_str_array > 0) H5Sclose(sid_vlen_str_array); /* fixed len string array */ - if(tid_fixlen_str_array_pre) + if(tid_fixlen_str_array_pre > 0) H5Tclose(tid_fixlen_str_array_pre); - if(tid_fixlen_str_array) + if(tid_fixlen_str_array > 0) H5Tclose(tid_fixlen_str_array); - if(sid_fixlen_str_array) + if(sid_fixlen_str_array > 0) H5Sclose(sid_fixlen_str_array); /* compound */ - if(tid1_comp) + if(tid1_comp > 0) H5Tclose(tid1_comp); - if(tid2_comp) + if(tid2_comp > 0) H5Tclose(tid2_comp); - if(tid3_comp) + if(tid3_comp > 0) H5Tclose(tid3_comp); - if(tid4_comp) + if(tid4_comp > 0) H5Tclose(tid4_comp); - if(tid5_comp) + if(tid5_comp > 0) H5Tclose(tid5_comp); - if(tid6_comp) + if(tid6_comp > 0) H5Tclose(tid6_comp); - if(tid7_comp) + if(tid7_comp > 0) H5Tclose(tid7_comp); - if(tid8_comp) + if(tid8_comp > 0) H5Tclose(tid8_comp); - if(tid9_comp) + if(tid9_comp > 0) H5Tclose(tid9_comp); - if(did_comp) + if(did_comp > 0) H5Dclose(did_comp); - if(sid_comp) + if(sid_comp > 0) H5Sclose(sid_comp); return status; -} +} /* end test_comp_vlen_strings() */ /*------------------------------------------------------------------------- @@ -5023,10 +5032,10 @@ static void test_data_nocomparables (const char * fname, int make_diffs) /* attr2 - non-compatible : same rank, different dimention */ - write_attr(did2,1, attr2_dim_ptr,"attr2", H5T_NATIVE_INT, data3); + write_attr(did2,1,(hsize_t *)attr2_dim_ptr,"attr2", H5T_NATIVE_INT, data3); /* attr3 - non-compatible : different rank */ - write_attr(did2, rank_attr,attr3_dim_ptr,"attr3", H5T_NATIVE_INT, attr_data_ptr3); + write_attr(did2, rank_attr,(hsize_t *)attr3_dim_ptr,"attr3", H5T_NATIVE_INT, attr_data_ptr3); /* attr4 - compatible : different data values */ write_attr(did2,1,dims1_1,"attr4", H5T_NATIVE_INT, attr_data_ptr4); @@ -6551,7 +6560,7 @@ void write_dset_in(hid_t loc_id, /* allocate and initialize array data to write */ size = ( H5TOOLS_MALLOCSIZE / sizeof(double) + 1 ) * sizeof(double); - dbuf = HDmalloc( size ); + dbuf = (double *)HDmalloc( size ); for( j = 0; j < H5TOOLS_MALLOCSIZE / sizeof(double) + 1; j++) dbuf[j] = j; @@ -7018,10 +7027,10 @@ void gen_datareg(hid_t fid, int i; /* allocate the buffer for write the references */ - rbuf = HDcalloc((size_t)2, sizeof(hdset_reg_ref_t)); + rbuf = (hdset_reg_ref_t *)HDcalloc((size_t)2, sizeof(hdset_reg_ref_t)); /* allocate the buffer for write the data dataset */ - buf = HDmalloc(10 * 10 * sizeof(int)); + buf = (int *)HDmalloc(10 * 10 * sizeof(int)); for(i = 0; i < 10 * 10; i++) buf[i] = i; diff --git a/tools/h5diff/testh5diff.sh.in b/tools/h5diff/testh5diff.sh.in index 3be0b80..373558e 100644 --- a/tools/h5diff/testh5diff.sh.in +++ b/tools/h5diff/testh5diff.sh.in @@ -331,10 +331,10 @@ COPY_TESTFILES_TO_TESTDIR() INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'` INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'` if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then - $CP -f $tstfile $TESTDIR + $CP -f $tstfile $TESTDIR if [ $? -ne 0 ]; then echo "Error: FAILED to copy $tstfile ." - + # Comment out this to CREATE expected file exit $EXIT_FAILURE fi @@ -442,9 +442,9 @@ TOOLTEST() { cp $actual_err $actual_err_sav STDERR_FILTER $actual_err cat $actual_err >> $actual - # don't add exit code check in pmode, as it causes failure. (exit code + # don't add exit code check in pmode, as it causes failure. (exit code # is from mpirun not tool) - # if any problem occurs relate to an exit code, it will be caught in + # if any problem occurs relate to an exit code, it will be caught in # serial mode, so the test is fullfilled. if test $h5haveexitcode = 'yes' -a -z "$pmode"; then echo "EXIT CODE: $EXIT_CODE" >> $actual @@ -462,7 +462,7 @@ TOOLTEST() { nerrors="`expr $nerrors + 1`" test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /' else - # parallel mode output are often of different ordering from serial + # parallel mode output are often of different ordering from serial # output. If the sorted expected and actual files compare the same, # it is safe to assume the actual output match the expected file. expect_sorted=expect_sorted @@ -493,24 +493,24 @@ TOOLTEST() { # Clean up output file if test -z "$HDF5_NOCLEANUP"; then - rm -f $actual $actual_err $actual_sav $actual_err_sav - rm -f $actual_sorted $expect_sorted + rm -f $actual $actual_err $actual_sav $actual_err_sav + rm -f $actual_sorted $expect_sorted fi } # Print a "SKIP" message SKIP() { - TESTING $H5DIFF $@ - echo " -SKIP-" + TESTING $H5DIFF $@ + echo " -SKIP-" } ############################################################################## -# The tests +# The tests # To avoid the printing of the complete full path of the test file, that hides -# all the other parameters for long paths, the printing of the command line +# all the other parameters for long paths, the printing of the command line # is done first in # TESTING with the name only of the test file $TOOL, not its full path $TESTFILE ############################################################################## @@ -525,13 +525,13 @@ COPY_TESTFILES_TO_TESTDIR TOOLTEST h5diff_10.txt -h # 1.1 normal mode -TOOLTEST h5diff_11.txt h5diff_basic1.h5 h5diff_basic2.h5 +TOOLTEST h5diff_11.txt h5diff_basic1.h5 h5diff_basic2.h5 # 1.2 normal mode with objects TOOLTEST h5diff_12.txt h5diff_basic1.h5 h5diff_basic2.h5 g1/dset1 g1/dset2 # 1.3 report mode -TOOLTEST h5diff_13.txt -r h5diff_basic1.h5 h5diff_basic2.h5 +TOOLTEST h5diff_13.txt -r h5diff_basic1.h5 h5diff_basic2.h5 # 1.4 report mode with objects TOOLTEST h5diff_14.txt -r h5diff_basic1.h5 h5diff_basic2.h5 g1/dset1 g1/dset2 @@ -549,7 +549,7 @@ TOOLTEST h5diff_16_2.txt --verbose --relative=0.02 h5diff_basic1.h5 h5diff_basic TOOLTEST h5diff_16_3.txt -v -p 0.02 h5diff_basic1.h5 h5diff_basic1.h5 g1/dset9 g1/dset10 # 1.7 verbose mode -TOOLTEST h5diff_17.txt -v h5diff_basic1.h5 h5diff_basic2.h5 +TOOLTEST h5diff_17.txt -v h5diff_basic1.h5 h5diff_basic2.h5 # 1.7 test 32-bit INFINITY TOOLTEST h5diff_171.txt -v h5diff_basic1.h5 h5diff_basic1.h5 /g1/fp19 /g1/fp19_COPY @@ -557,8 +557,8 @@ TOOLTEST h5diff_171.txt -v h5diff_basic1.h5 h5diff_basic1.h5 /g1/fp19 /g1/fp19_C # 1.7 test 64-bit INFINITY TOOLTEST h5diff_172.txt -v h5diff_basic1.h5 h5diff_basic1.h5 /g1/fp20 /g1/fp20_COPY -# 1.8 quiet mode -TOOLTEST h5diff_18.txt -q h5diff_basic1.h5 h5diff_basic2.h5 +# 1.8 quiet mode +TOOLTEST h5diff_18.txt -q h5diff_basic1.h5 h5diff_basic2.h5 # 1.8 -v and -q TOOLTEST h5diff_18_1.txt -v -q h5diff_basic1.h5 h5diff_basic2.h5 @@ -588,7 +588,7 @@ TOOLTEST h5diff_23.txt -v h5diff_types.h5 h5diff_types.h5 g1 g1 TOOLTEST h5diff_24.txt -v h5diff_types.h5 h5diff_types.h5 t1 t1 # 2.5 -TOOLTEST h5diff_25.txt -v h5diff_types.h5 h5diff_types.h5 l1 l1 +TOOLTEST h5diff_25.txt -v h5diff_types.h5 h5diff_types.h5 l1 l1 # 2.6 TOOLTEST h5diff_26.txt -v h5diff_types.h5 h5diff_types.h5 g1 g2 @@ -642,7 +642,7 @@ TOOLTEST h5diff_57.txt -v h5diff_dtypes.h5 h5diff_dtypes.h5 dset7a dset7b # 5.8 (region reference) TOOLTEST h5diff_58.txt -v h5diff_dset1.h5 h5diff_dset2.h5 refreg -# test for both dset and attr with same type but with different size +# test for both dset and attr with same type but with different size # ( HDDFV-7942 ) TOOLTEST h5diff_59.txt -v h5diff_dtypes.h5 h5diff_dtypes.h5 dset11a dset11b @@ -652,14 +652,14 @@ TOOLTEST h5diff_59.txt -v h5diff_dtypes.h5 h5diff_dtypes.h5 dset11a dset11b # 6.0: Check if the command line number of arguments is less than 3 -TOOLTEST h5diff_600.txt h5diff_basic1.h5 +TOOLTEST h5diff_600.txt h5diff_basic1.h5 -# 6.1: Check if non-exist object name is specified +# 6.1: Check if non-exist object name is specified TOOLTEST h5diff_601.txt h5diff_basic1.h5 h5diff_basic1.h5 nono_obj # ############################################################################## -# # -d +# # -d # ############################################################################## @@ -678,7 +678,7 @@ TOOLTEST h5diff_606.txt -d 0x1 h5diff_basic1.h5 h5diff_basic2.h5 g1/dset3 g1/dse # 6.7: string TOOLTEST h5diff_607.txt -d "1" h5diff_basic1.h5 h5diff_basic2.h5 g1/dset3 g1/dset4 -# 6.8: use system epsilon +# 6.8: use system epsilon TOOLTEST h5diff_608.txt --use-system-epsilon h5diff_basic1.h5 h5diff_basic2.h5 g1/dset3 g1/dset4 # 6.9: number larger than biggest difference @@ -762,7 +762,7 @@ TOOLTEST h5diff_631.txt -v --use-system-epsilon h5diff_basic1.h5 h5diff_basic1.h # ############################################################################## # 7. attributes # ############################################################################## -TOOLTEST h5diff_70.txt -v h5diff_attr1.h5 h5diff_attr2.h5 +TOOLTEST h5diff_70.txt -v h5diff_attr1.h5 h5diff_attr2.h5 # temporary test to verify HDF5-8625 TOOLTEST h5diff_tmp1.txt tmptest2.he5 tmptest.he5 # temporary test to verify HDF5-8639 @@ -772,10 +772,10 @@ TOOLTEST h5diff_tmp2.txt tmpSingleSiteBethe.output.h5 tmpSingleSiteBethe.referen # attrs with verbose option level # ################################################## -TOOLTEST h5diff_700.txt -v1 h5diff_attr1.h5 h5diff_attr2.h5 -TOOLTEST h5diff_701.txt -v2 h5diff_attr1.h5 h5diff_attr2.h5 -TOOLTEST h5diff_702.txt --verbose=1 h5diff_attr1.h5 h5diff_attr2.h5 -TOOLTEST h5diff_703.txt --verbose=2 h5diff_attr1.h5 h5diff_attr2.h5 +TOOLTEST h5diff_700.txt -v1 h5diff_attr1.h5 h5diff_attr2.h5 +TOOLTEST h5diff_701.txt -v2 h5diff_attr1.h5 h5diff_attr2.h5 +TOOLTEST h5diff_702.txt --verbose=1 h5diff_attr1.h5 h5diff_attr2.h5 +TOOLTEST h5diff_703.txt --verbose=2 h5diff_attr1.h5 h5diff_attr2.h5 # same attr number , all same attr name TOOLTEST h5diff_704.txt -v2 h5diff_attr_v_level1.h5 h5diff_attr_v_level2.h5 /g @@ -789,7 +789,7 @@ TOOLTEST h5diff_706.txt -v2 h5diff_attr_v_level1.h5 h5diff_attr_v_level2.h5 /nty # different attr number , same attr name (intersected) TOOLTEST h5diff_707.txt -v2 h5diff_attr_v_level1.h5 h5diff_attr_v_level2.h5 /g2 -# different attr number , all different attr name +# different attr number , all different attr name TOOLTEST h5diff_708.txt -v2 h5diff_attr_v_level1.h5 h5diff_attr_v_level2.h5 /g3 # when no attributes exist in both objects @@ -801,32 +801,32 @@ TOOLTEST h5diff_710.txt -v2 h5diff_attr_v_level1.h5 h5diff_attr_v_level2.h5 # ############################################################################## # 8. all dataset datatypes # ############################################################################## -TOOLTEST h5diff_80.txt -v h5diff_dset1.h5 h5diff_dset2.h5 +TOOLTEST h5diff_80.txt -v h5diff_dset1.h5 h5diff_dset2.h5 # 9. compare a file with itself TOOLTEST h5diff_90.txt -v h5diff_basic2.h5 h5diff_basic2.h5 # 10. read by hyperslab, print indexes -TOOLTEST h5diff_100.txt -v h5diff_hyper1.h5 h5diff_hyper2.h5 +TOOLTEST h5diff_100.txt -v h5diff_hyper1.h5 h5diff_hyper2.h5 # 11. floating point comparison # double value -TOOLTEST h5diff_101.txt -v h5diff_basic1.h5 h5diff_basic1.h5 g1/d1 g1/d2 +TOOLTEST h5diff_101.txt -v h5diff_basic1.h5 h5diff_basic1.h5 g1/d1 g1/d2 # float value -TOOLTEST h5diff_102.txt -v h5diff_basic1.h5 h5diff_basic1.h5 g1/fp1 g1/fp2 +TOOLTEST h5diff_102.txt -v h5diff_basic1.h5 h5diff_basic1.h5 g1/fp1 g1/fp2 -# with --use-system-epsilon for double value -TOOLTEST h5diff_103.txt -v --use-system-epsilon h5diff_basic1.h5 h5diff_basic1.h5 g1/d1 g1/d2 +# with --use-system-epsilon for double value +TOOLTEST h5diff_103.txt -v --use-system-epsilon h5diff_basic1.h5 h5diff_basic1.h5 g1/d1 g1/d2 # with --use-system-epsilon for float value -TOOLTEST h5diff_104.txt -v --use-system-epsilon h5diff_basic1.h5 h5diff_basic1.h5 g1/fp1 g1/fp2 +TOOLTEST h5diff_104.txt -v --use-system-epsilon h5diff_basic1.h5 h5diff_basic1.h5 g1/fp1 g1/fp2 # not comparable -c flag -TOOLTEST h5diff_200.txt h5diff_basic2.h5 h5diff_basic2.h5 g2/dset1 g2/dset2 +TOOLTEST h5diff_200.txt h5diff_basic2.h5 h5diff_basic2.h5 g2/dset1 g2/dset2 -TOOLTEST h5diff_201.txt -c h5diff_basic2.h5 h5diff_basic2.h5 g2/dset1 g2/dset2 +TOOLTEST h5diff_201.txt -c h5diff_basic2.h5 h5diff_basic2.h5 g2/dset1 g2/dset2 TOOLTEST h5diff_202.txt -c h5diff_basic2.h5 h5diff_basic2.h5 g2/dset2 g2/dset3 @@ -842,9 +842,9 @@ TOOLTEST h5diff_206.txt -c h5diff_basic2.h5 h5diff_basic2.h5 g2/dset7 g2/dset8 TOOLTEST h5diff_207.txt -c h5diff_basic2.h5 h5diff_basic2.h5 g2/dset8 g2/dset9 # not comparable in dataspace of zero dimension size -TOOLTEST h5diff_208.txt -c h5diff_dset_zero_dim_size1.h5 h5diff_dset_zero_dim_size2.h5 +TOOLTEST h5diff_208.txt -c h5diff_dset_zero_dim_size1.h5 h5diff_dset_zero_dim_size2.h5 -# non-comparable dataset with comparable attribute, and other comparable datasets. +# non-comparable dataset with comparable attribute, and other comparable datasets. # Also test non-compatible attributes with different type, dimention, rank. # All the comparables should display differences. TOOLTEST h5diff_220.txt -c non_comparables1.h5 non_comparables2.h5 /g1 @@ -862,7 +862,7 @@ TOOLTEST h5diff_222.txt -c non_comparables1.h5 non_comparables2.h5 TOOLTEST h5diff_223.txt -c non_comparables1.h5 non_comparables2.h5 /diffobjtypes # swap files TOOLTEST h5diff_224.txt -c non_comparables2.h5 non_comparables1.h5 /diffobjtypes - + # ############################################################################## # # Links compare without --follow-symlinks nor --no-dangling-links # ############################################################################## @@ -958,28 +958,28 @@ TOOLTEST h5diff_425.txt --follow-symlinks -v h5diff_ext2softlink_src.h5 h5diff_e TOOLTEST h5diff_450.txt --follow-symlinks -v h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 # dangling links --follow-symlinks and --no-dangling-links (FILE to FILE) -TOOLTEST h5diff_451.txt --follow-symlinks -v --no-dangling-links h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 +TOOLTEST h5diff_451.txt --follow-symlinks -v --no-dangling-links h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 # try --no-dangling-links without --follow-symlinks options TOOLTEST h5diff_452.txt --no-dangling-links h5diff_softlinks.h5 h5diff_softlinks.h5 # dangling link found for soft links (FILE to FILE) -TOOLTEST h5diff_453.txt --follow-symlinks -v --no-dangling-links h5diff_softlinks.h5 h5diff_softlinks.h5 +TOOLTEST h5diff_453.txt --follow-symlinks -v --no-dangling-links h5diff_softlinks.h5 h5diff_softlinks.h5 # dangling link found for soft links (obj to obj) -TOOLTEST h5diff_454.txt --follow-symlinks -v --no-dangling-links h5diff_softlinks.h5 h5diff_softlinks.h5 /softlink_dset2 /softlink_noexist +TOOLTEST h5diff_454.txt --follow-symlinks -v --no-dangling-links h5diff_softlinks.h5 h5diff_softlinks.h5 /softlink_dset2 /softlink_noexist # dangling link found for soft links (obj to obj) Both dangle links -TOOLTEST h5diff_455.txt --follow-symlinks -v --no-dangling-links h5diff_softlinks.h5 h5diff_softlinks.h5 /softlink_noexist /softlink_noexist +TOOLTEST h5diff_455.txt --follow-symlinks -v --no-dangling-links h5diff_softlinks.h5 h5diff_softlinks.h5 /softlink_noexist /softlink_noexist # dangling link found for ext links (FILE to FILE) -TOOLTEST h5diff_456.txt --follow-symlinks -v --no-dangling-links h5diff_extlink_src.h5 h5diff_extlink_src.h5 +TOOLTEST h5diff_456.txt --follow-symlinks -v --no-dangling-links h5diff_extlink_src.h5 h5diff_extlink_src.h5 # dangling link found for ext links (obj to obj). target file exist -TOOLTEST h5diff_457.txt --follow-symlinks -v --no-dangling-links h5diff_extlink_src.h5 h5diff_extlink_src.h5 /ext_link_dset1 /ext_link_noexist1 +TOOLTEST h5diff_457.txt --follow-symlinks -v --no-dangling-links h5diff_extlink_src.h5 h5diff_extlink_src.h5 /ext_link_dset1 /ext_link_noexist1 # dangling link found for ext links (obj to obj). target file NOT exist -TOOLTEST h5diff_458.txt --follow-symlinks -v --no-dangling-links h5diff_extlink_src.h5 h5diff_extlink_src.h5 /ext_link_dset1 /ext_link_noexist2 +TOOLTEST h5diff_458.txt --follow-symlinks -v --no-dangling-links h5diff_extlink_src.h5 h5diff_extlink_src.h5 /ext_link_dset1 /ext_link_noexist2 # dangling link found for ext links (obj to obj). Both dangle links TOOLTEST h5diff_459.txt --follow-symlinks -v --no-dangling-links h5diff_extlink_src.h5 h5diff_extlink_src.h5 /ext_link_noexist1 /ext_link_noexist2 @@ -993,14 +993,14 @@ TOOLTEST h5diff_466.txt -v --follow-symlinks h5diff_danglelinks1.h5 h5diff_dangl # soft link vs. soft dangling TOOLTEST h5diff_467.txt -v --follow-symlinks h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /soft_link2 # ext dangling vs. ext dangling -TOOLTEST h5diff_468.txt -v --follow-symlinks h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /ext_link4 +TOOLTEST h5diff_468.txt -v --follow-symlinks h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /ext_link4 # ext link vs. ext dangling TOOLTEST h5diff_469.txt -v --follow-symlinks h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /ext_link2 #---------------------------------------- -# dangling links without follow symlink +# dangling links without follow symlink # (HDFFV-7998) -# test - soft dangle links (same and different paths), +# test - soft dangle links (same and different paths), # - external dangle links (same and different paths) TOOLTEST h5diff_471.txt -v h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 TOOLTEST h5diff_472.txt -v h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /soft_link1 @@ -1011,7 +1011,7 @@ TOOLTEST h5diff_475.txt -v h5diff_danglelinks1.h5 h5diff_danglelinks2.h5 /ext_li # ############################################################################## # # test for group diff recursivly # ############################################################################## -# root +# root TOOLTEST h5diff_500.txt -v h5diff_grp_recurse1.h5 h5diff_grp_recurse2.h5 / / TOOLTEST h5diff_501.txt -v --follow-symlinks h5diff_grp_recurse1.h5 h5diff_grp_recurse2.h5 / / @@ -1045,7 +1045,7 @@ TOOLTEST h5diff_513.txt -v h5diff_grp_recurse1.h5 h5diff_grp_recurse2.h5 /slink_ TOOLTEST h5diff_514.txt -v --follow-symlinks h5diff_grp_recurse1.h5 h5diff_grp_recurse2.h5 /slink_grp10 /slink_grp11 ############################################################################### -# Test for group recursive diff via multi-linked external links +# Test for group recursive diff via multi-linked external links # With follow-symlinks, file h5diff_grp_recurse_ext1.h5 and h5diff_grp_recurse_ext2-1.h5 should # be same with the external links. ############################################################################### @@ -1068,7 +1068,7 @@ TOOLTEST h5diff_480.txt -v --exclude-path /group1/dset3 h5diff_exclude1-1.h5 h5d TOOLTEST h5diff_481.txt -v h5diff_exclude1-1.h5 h5diff_exclude1-2.h5 # -# Different structure, different names. +# Different structure, different names. # # Exclude all the different objects. Expect return - same TOOLTEST h5diff_482.txt -v --exclude-path "/group1" --exclude-path "/dset1" h5diff_exclude2-1.h5 h5diff_exclude2-2.h5 @@ -1099,9 +1099,9 @@ TOOLTEST h5diff_530.txt -v h5diff_comp_vl_strs.h5 h5diff_comp_vl_strs.h5 /group TOOLTEST h5diff_540.txt -v compounds_array_vlen1.h5 compounds_array_vlen2.h5 # ############################################################################## -# # Test mutually exclusive options +# # Test mutually exclusive options # ############################################################################## -# Test with -d , -p and --use-system-epsilon. +# Test with -d , -p and --use-system-epsilon. TOOLTEST h5diff_640.txt -v -d 5 -p 0.05 --use-system-epsilon h5diff_basic1.h5 h5diff_basic2.h5 /g1/dset3 /g1/dset4 TOOLTEST h5diff_641.txt -v -d 5 -p 0.05 h5diff_basic1.h5 h5diff_basic2.h5 /g1/dset3 /g1/dset4 TOOLTEST h5diff_642.txt -v -p 0.05 -d 5 h5diff_basic1.h5 h5diff_basic2.h5 /g1/dset3 /g1/dset4 diff --git a/tools/h5dump/Makefile.in b/tools/h5dump/Makefile.in deleted file mode 100644 index cfb268c..0000000 --- a/tools/h5dump/Makefile.in +++ /dev/null @@ -1,1454 +0,0 @@ -# Makefile.in generated by automake 1.14.1 from Makefile.am. -# @configure_input@ - -# Copyright (C) 1994-2013 Free Software Foundation, Inc. - -# This Makefile.in is free software; the Free Software Foundation -# gives unlimited permission to copy and/or distribute it, -# with or without modifications, as long as this notice is preserved. - -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY, to the extent permitted by law; without -# even the implied warranty of MERCHANTABILITY or FITNESS FOR A -# PARTICULAR PURPOSE. - -@SET_MAKE@ - -# -# Copyright by The HDF Group. -# Copyright by the Board of Trustees of the University of Illinois. -# All rights reserved. -# -# This file is part of HDF5. 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fi; \ - done - -# Tell versions [3.59,3.63) of GNU make to not export all variables. -# Otherwise a system limit (for SysV at least) may be exceeded. -.NOEXPORT: diff --git a/tools/h5dump/errfiles/tall-1.err b/tools/h5dump/errfiles/tall-1.err index ba691d0..ab9dbe3 100644 --- a/tools/h5dump/errfiles/tall-1.err +++ b/tools/h5dump/errfiles/tall-1.err @@ -1,9 +1,9 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object - major: Symbol table + major: Object header minor: Can't open object #001: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #002: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table diff --git a/tools/h5dump/errfiles/tall-2A.err b/tools/h5dump/errfiles/tall-2A.err index ba691d0..ab9dbe3 100644 --- a/tools/h5dump/errfiles/tall-2A.err +++ b/tools/h5dump/errfiles/tall-2A.err @@ -1,9 +1,9 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object - major: Symbol table + major: Object header minor: Can't open object #001: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #002: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table diff --git a/tools/h5dump/errfiles/tall-2A0.err b/tools/h5dump/errfiles/tall-2A0.err index ba691d0..ab9dbe3 100644 --- a/tools/h5dump/errfiles/tall-2A0.err +++ b/tools/h5dump/errfiles/tall-2A0.err @@ -1,9 +1,9 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object - major: Symbol table + major: Object header minor: Can't open object #001: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #002: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table diff --git a/tools/h5dump/errfiles/tall-2B.err b/tools/h5dump/errfiles/tall-2B.err index ba691d0..ab9dbe3 100644 --- a/tools/h5dump/errfiles/tall-2B.err +++ b/tools/h5dump/errfiles/tall-2B.err @@ -1,9 +1,9 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object - major: Symbol table + major: Object header minor: Can't open object #001: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #002: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table diff --git a/tools/h5dump/errfiles/tdset-2.err b/tools/h5dump/errfiles/tdset-2.err index d9b92f3..775351e 100644 --- a/tools/h5dump/errfiles/tdset-2.err +++ b/tools/h5dump/errfiles/tdset-2.err @@ -1,17 +1,20 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): - #000: (file name) line (number) in H5Dopen2(): not found + #000: (file name) line (number) in H5Dopen2(): unable to open dataset + major: Dataset + minor: Can't open object + #001: (file name) line (number) in H5D__open_name(): not found major: Dataset minor: Object not found - #001: (file name) line (number) in H5G_loc_find(): can't find object + #002: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #002: (file name) line (number) in H5G_traverse(): internal path traversal failed + #003: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse_real(): traversal operator failed + #004: (file name) line (number) in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed - #004: (file name) line (number) in H5G_loc_find_cb(): object 'dset3' doesn't exist + #005: (file name) line (number) in H5G_loc_find_cb(): object 'dset3' doesn't exist major: Symbol table minor: Object not found HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): diff --git a/tools/h5dump/errfiles/textlink.err b/tools/h5dump/errfiles/textlink.err index 03c0550..95556db 100644 --- a/tools/h5dump/errfiles/textlink.err +++ b/tools/h5dump/errfiles/textlink.err @@ -1,9 +1,9 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object - major: Symbol table + major: Object header minor: Can't open object #001: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #002: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -25,10 +25,10 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): minor: Unable to open file HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object - major: Symbol table + major: Object header minor: Can't open object #001: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #002: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table diff --git a/tools/h5dump/errfiles/textlinkfar.err b/tools/h5dump/errfiles/textlinkfar.err index 969e17c..5aa7f87 100644 --- a/tools/h5dump/errfiles/textlinkfar.err +++ b/tools/h5dump/errfiles/textlinkfar.err @@ -1,9 +1,9 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object - major: Symbol table + major: Object header minor: Can't open object #001: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #002: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -24,7 +24,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #008: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #009: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -67,7 +67,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #006: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #007: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -88,7 +88,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #013: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #014: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -109,7 +109,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #020: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #021: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -130,7 +130,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #027: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #028: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -164,7 +164,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #006: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #007: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -185,7 +185,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #013: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #014: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -206,7 +206,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #020: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #021: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -227,7 +227,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #027: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #028: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table diff --git a/tools/h5dump/errfiles/textlinksrc.err b/tools/h5dump/errfiles/textlinksrc.err index 969e17c..5aa7f87 100644 --- a/tools/h5dump/errfiles/textlinksrc.err +++ b/tools/h5dump/errfiles/textlinksrc.err @@ -1,9 +1,9 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object - major: Symbol table + major: Object header minor: Can't open object #001: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #002: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -24,7 +24,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #008: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #009: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -67,7 +67,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #006: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #007: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -88,7 +88,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #013: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #014: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -109,7 +109,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #020: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #021: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -130,7 +130,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #027: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #028: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -164,7 +164,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #006: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #007: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -185,7 +185,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #013: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #014: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -206,7 +206,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #020: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #021: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table @@ -227,7 +227,7 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): major: Symbol table minor: Can't open object #027: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #028: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table diff --git a/tools/h5dump/errfiles/torderlinks1.err b/tools/h5dump/errfiles/torderlinks1.err index 780c7e6..e665f03 100644 --- a/tools/h5dump/errfiles/torderlinks1.err +++ b/tools/h5dump/errfiles/torderlinks1.err @@ -1,9 +1,9 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object - major: Symbol table + major: Object header minor: Can't open object #001: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #002: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table diff --git a/tools/h5dump/errfiles/torderlinks2.err b/tools/h5dump/errfiles/torderlinks2.err index 780c7e6..e665f03 100644 --- a/tools/h5dump/errfiles/torderlinks2.err +++ b/tools/h5dump/errfiles/torderlinks2.err @@ -1,9 +1,9 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): #000: (file name) line (number) in H5Oopen(): unable to open object - major: Symbol table + major: Object header minor: Can't open object #001: (file name) line (number) in H5O_open_name(): object not found - major: Symbol table + major: Object header minor: Object not found #002: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table diff --git a/tools/h5dump/errfiles/tperror.err b/tools/h5dump/errfiles/tperror.err index 19a7a73..29f9e7f 100644 --- a/tools/h5dump/errfiles/tperror.err +++ b/tools/h5dump/errfiles/tperror.err @@ -1,17 +1,20 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): - #000: (file name) line (number) in H5Dopen2(): not found + #000: (file name) line (number) in H5Dopen2(): unable to open dataset + major: Dataset + minor: Can't open object + #001: (file name) line (number) in H5D__open_name(): not found major: Dataset minor: Object not found - #001: (file name) line (number) in H5G_loc_find(): can't find object + #002: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #002: (file name) line (number) in H5G_traverse(): internal path traversal failed + #003: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse_real(): traversal operator failed + #004: (file name) line (number) in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed - #004: (file name) line (number) in H5G_loc_find_cb(): object 'bogus' doesn't exist + #005: (file name) line (number) in H5G_loc_find_cb(): object 'bogus' doesn't exist major: Symbol table minor: Object not found HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): diff --git a/tools/h5dump/errfiles/tslink-D.err b/tools/h5dump/errfiles/tslink-D.err index b98e324..924e9cf 100644 --- a/tools/h5dump/errfiles/tslink-D.err +++ b/tools/h5dump/errfiles/tslink-D.err @@ -1,25 +1,28 @@ HDF5-DIAG: Error detected in HDF5 (version (number)) thread (IDs): - #000: (file name) line (number) in H5Dopen2(): not found + #000: (file name) line (number) in H5Dopen2(): unable to open dataset + major: Dataset + minor: Can't open object + #001: (file name) line (number) in H5D__open_name(): not found major: Dataset minor: Object not found - #001: (file name) line (number) in H5G_loc_find(): can't find object + #002: (file name) line (number) in H5G_loc_find(): can't find object major: Symbol table minor: Object not found - #002: (file name) line (number) in H5G_traverse(): internal path traversal failed + #003: (file name) line (number) in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found - #003: (file name) line (number) in H5G_traverse_real(): special link traversal failed + #004: (file name) line (number) in H5G_traverse_real(): special link traversal failed major: Links minor: Link traversal failure - #004: (file name) line (number) in H5G__traverse_special(): symbolic link traversal failed + #005: (file name) line (number) in H5G__traverse_special(): symbolic link traversal failed major: Links minor: Link traversal failure - #005: (file name) line (number) in H5G_traverse_slink(): unable to follow symbolic link + #006: (file name) line (number) in H5G_traverse_slink(): unable to follow symbolic link major: Symbol table minor: Object not found - #006: (file name) line (number) in H5G_traverse_real(): traversal operator failed + #007: (file name) line (number) in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed - #007: (file name) line (number) in H5G_traverse_slink_cb(): component not found + #008: (file name) line (number) in H5G_traverse_slink_cb(): component not found major: Symbol table minor: Object not found diff --git a/tools/h5dump/h5dump.c b/tools/h5dump/h5dump.c index 3c60bb0..68889c9 100644 --- a/tools/h5dump/h5dump.c +++ b/tools/h5dump/h5dump.c @@ -389,10 +389,10 @@ table_list_add(hid_t oid, unsigned long file_no) /* Allocate space if necessary */ if(table_list.nused == table_list.nalloc) { - void *tmp_ptr; + h5dump_table_items_t *tmp_ptr; table_list.nalloc = MAX(1, table_list.nalloc * 2); - if(NULL == (tmp_ptr = HDrealloc(table_list.tables, table_list.nalloc * sizeof(table_list.tables[0])))) + if(NULL == (tmp_ptr = (h5dump_table_items_t *)HDrealloc(table_list.tables, table_list.nalloc * sizeof(table_list.tables[0])))) return -1; table_list.tables = tmp_ptr; } /* end if */ diff --git a/tools/h5dump/h5dump.h b/tools/h5dump/h5dump.h index 7bfead7..2b1fb04 100644 --- a/tools/h5dump/h5dump.h +++ b/tools/h5dump/h5dump.h @@ -38,16 +38,17 @@ typedef struct dump_functions_t { } dump_functions; /* List of table structures. There is one table structure for each file */ +typedef struct h5dump_table_items_t { + unsigned long fileno; /* File number that these tables refer to */ + hid_t oid; /* ID of an object in this file, held open so fileno is consistent */ + table_t *group_table; /* Table of groups */ + table_t *dset_table; /* Table of datasets */ + table_t *type_table; /* Table of datatypes */ +} h5dump_table_items_t; typedef struct h5dump_table_list_t { - size_t nalloc; - size_t nused; - struct { - unsigned long fileno; /* File number that these tables refer to */ - hid_t oid; /* ID of an object in this file, held open so fileno is consistent */ - table_t *group_table; /* Table of groups */ - table_t *dset_table; /* Table of datasets */ - table_t *type_table; /* Table of datatypes */ - } *tables; + size_t nalloc; + size_t nused; + h5dump_table_items_t *tables; } h5dump_table_list_t; h5dump_table_list_t table_list = {0, 0, NULL}; diff --git a/tools/h5dump/h5dump_ddl.c b/tools/h5dump/h5dump_ddl.c index 3822251..fd50710 100644 --- a/tools/h5dump/h5dump_ddl.c +++ b/tools/h5dump/h5dump_ddl.c @@ -377,6 +377,8 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR } break; + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: default: error_msg("unknown object \"%s\"\n", name); h5tools_setstatus(EXIT_FAILURE); @@ -509,6 +511,11 @@ dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ATTR HDfree(targbuf); break; + case H5L_TYPE_ERROR: + case H5L_TYPE_MAX: + HDassert(0); + /* fall through */ + case H5L_TYPE_HARD: default: ctx.need_prefix = TRUE; h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); @@ -1054,7 +1061,10 @@ dump_dataset(hid_t did, const char *name, struct subset_t *sset) } break; + case H5T_NO_CLASS: + case H5T_NCLASSES: default: + HDassert(0); break; } /* end switch */ } /* for(i=0;i<data_loop;i++) */ @@ -1508,10 +1518,10 @@ handle_paths(hid_t fid, const char *path_name, void H5_ATTR_UNUSED * data, int H void handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H5_ATTR_UNUSED pe, const char H5_ATTR_UNUSED *display_name) { - hid_t oid = -1; - hid_t attr_id = -1; - char *obj_name; - char *attr_name; + hid_t oid = -1; + hid_t attr_id = -1; + char *obj_name = NULL; + char *attr_name = NULL; int j; h5tools_str_t buffer; /* string into which to render */ h5tools_context_t ctx; /* print context */ @@ -1888,8 +1898,9 @@ handle_links(hid_t fid, const char *links, void H5_ATTR_UNUSED * data, int H5_AT begin_obj(h5tools_dump_header_format->softlinkbegin, links, h5tools_dump_header_format->softlinkblockbegin); PRINTVALSTREAM(rawoutstream, "\n"); indentation(COL); - if(H5Lget_val(fid, links, buf, linfo.u.val_size, H5P_DEFAULT) >= 0) + if(H5Lget_val(fid, links, buf, linfo.u.val_size, H5P_DEFAULT) >= 0) { PRINTSTREAM(rawoutstream, "LINKTARGET \"%s\"\n", buf); + } else { error_msg("h5dump error: unable to get link value for \"%s\"\n", links); h5tools_setstatus(EXIT_FAILURE); @@ -1927,6 +1938,11 @@ handle_links(hid_t fid, const char *links, void H5_ATTR_UNUSED * data, int H5_AT end_obj(h5tools_dump_header_format->extlinkend, h5tools_dump_header_format->extlinkblockend); break; + case H5L_TYPE_ERROR: + case H5L_TYPE_MAX: + HDassert(0); + /* fall through */ + case H5L_TYPE_HARD: default: begin_obj(h5tools_dump_header_format->udlinkbegin, links, h5tools_dump_header_format->udlinkblockbegin); PRINTVALSTREAM(rawoutstream, "\n"); @@ -2094,6 +2110,8 @@ dump_extlink(hid_t group, const char *linkname, const char *objname) case H5O_TYPE_NAMED_DATATYPE: handle_datatypes(group, linkname, NULL, 0, objname); break; + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: default: h5tools_setstatus(EXIT_FAILURE); } diff --git a/tools/h5dump/h5dump_ddl.h b/tools/h5dump/h5dump_ddl.h index 6cd9181..2b3f61e 100644 --- a/tools/h5dump/h5dump_ddl.h +++ b/tools/h5dump/h5dump_ddl.h @@ -34,6 +34,10 @@ void dump_fcontents(hid_t fid); /* callback function used by H5Aiterate2() */ herr_t dump_attr_cb(hid_t loc_id, const char *attr_name, const H5A_info_t *info, void *_op_data); +/* other iteration functions */ +void link_iteration(hid_t gid, unsigned crt_order_flags); +void attr_iteration(hid_t gid, unsigned attr_crt_order_flags); + void handle_paths(hid_t fid, const char *path_name, void *data, int pe, const char *display_name); void handle_datasets(hid_t fid, const char *dset, void *data, int pe, const char *display_name); void handle_attributes(hid_t fid, const char *attr, void H5_ATTR_UNUSED * data, int H5_ATTR_UNUSED pe, const char H5_ATTR_UNUSED *display_name); diff --git a/tools/h5dump/h5dump_defines.h b/tools/h5dump/h5dump_defines.h index 5f2df43..2be2dcc 100644 --- a/tools/h5dump/h5dump_defines.h +++ b/tools/h5dump/h5dump_defines.h @@ -23,23 +23,25 @@ #define COL 3 /* Macros for displaying objects */ -#define begin_obj(obj,name,begin) \ - do { \ - if ((name)) \ +#define begin_obj(obj,name,begin) \ + do { \ + if ((name)) { \ PRINTSTREAM(rawoutstream, "%s \"%s\" %s", (obj), (name), (begin)); \ - else \ - PRINTSTREAM(rawoutstream, "%s %s", (obj), (begin)); \ + } \ + else { \ + PRINTSTREAM(rawoutstream, "%s %s", (obj), (begin)); \ + } \ } while(0); -#define end_obj(obj,end) \ - do { \ - if(HDstrlen(end)) { \ - PRINTSTREAM(rawoutstream, "%s", end); \ - if(HDstrlen(obj)) \ - PRINTVALSTREAM(rawoutstream, " "); \ - } \ - if(HDstrlen(obj)) \ - PRINTSTREAM(rawoutstream, "%s", obj); \ +#define end_obj(obj,end) \ + do { \ + if(HDstrlen(end)) { \ + PRINTSTREAM(rawoutstream, "%s", end); \ + if(HDstrlen(obj)) \ + PRINTVALSTREAM(rawoutstream, " "); \ + } \ + if(HDstrlen(obj)) \ + PRINTSTREAM(rawoutstream, "%s", obj); \ } while(0); diff --git a/tools/h5dump/h5dump_xml.c b/tools/h5dump/h5dump_xml.c index 4f8d250..5bc43eb 100644 --- a/tools/h5dump/h5dump_xml.c +++ b/tools/h5dump/h5dump_xml.c @@ -359,6 +359,8 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ } break; + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: default: error_msg("unknown object \"%s\"\n", name); h5tools_setstatus(EXIT_FAILURE); @@ -521,42 +523,48 @@ xml_dump_all_cb(hid_t group, const char *name, const H5L_info_t *linfo, void H5_ HDfree(targbuf); break; + case H5L_TYPE_ERROR: + case H5L_TYPE_MAX: + HDassert(0); + /* fall through */ + case H5L_TYPE_HARD: default: - { - char linkxid[100]; - char parentxid[100]; - char *t_name = xml_escape_the_name(name); - char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/"); - char *t_obj_path = xml_escape_the_name(obj_path); + { + char linkxid[100]; + char parentxid[100]; + char *t_name = xml_escape_the_name(name); + char *t_prefix = xml_escape_the_name(HDstrcmp(prefix,"") ? prefix : "/"); + char *t_obj_path = xml_escape_the_name(obj_path); - /* Create OBJ-XIDs for the parent and object */ - xml_name_to_XID(t_obj_path, linkxid, (int)sizeof(linkxid), 1); - xml_name_to_XID(prefix, parentxid, (int)sizeof(parentxid), 1); + /* Create OBJ-XIDs for the parent and object */ + xml_name_to_XID(t_obj_path, linkxid, (int)sizeof(linkxid), 1); + xml_name_to_XID(prefix, parentxid, (int)sizeof(parentxid), 1); - ctx.need_prefix = TRUE; - h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); + ctx.need_prefix = TRUE; + h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); - /* Render the element */ - h5tools_str_reset(&buffer); - h5tools_str_append(&buffer, "<%sUserDefined LinkName=\"%s\" " - "OBJ-XID=\"%s\" " - "H5SourcePath=\"%s\" " - "LinkClass=\"%d\" " - "Parents=\"%s\" H5ParentPaths=\"%s\" />", - xmlnsprefix, - t_name, /* LinkName */ - linkxid, /* OBJ-XID */ - t_obj_path, /* H5SourcePath */ - linfo->type, /* LinkClass */ - parentxid, /* Parents */ - t_prefix); /* H5ParentPaths */ - h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); - - HDfree(t_prefix); - HDfree(t_name); - HDfree(t_obj_path); - } + /* Render the element */ + h5tools_str_reset(&buffer); + h5tools_str_append(&buffer, "<%sUserDefined LinkName=\"%s\" " + "OBJ-XID=\"%s\" " + "H5SourcePath=\"%s\" " + "LinkClass=\"%d\" " + "Parents=\"%s\" H5ParentPaths=\"%s\" />", + xmlnsprefix, + t_name, /* LinkName */ + linkxid, /* OBJ-XID */ + t_obj_path, /* H5SourcePath */ + linfo->type, /* LinkClass */ + parentxid, /* Parents */ + t_prefix); /* H5ParentPaths */ + h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); + + HDfree(t_prefix); + HDfree(t_name); + HDfree(t_obj_path); + } break; + } /* end switch */ } /* end else */ @@ -969,29 +977,36 @@ xml_print_datatype(hid_t type, unsigned in_group) h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "<%sIntegerType ByteOrder=\"",xmlnsprefix); switch (ord) { - case H5T_ORDER_LE: - h5tools_str_append(&buffer, "LE"); - break; - case H5T_ORDER_BE: - h5tools_str_append(&buffer, "BE"); - break; - case H5T_ORDER_VAX: - default: - h5tools_str_append(&buffer, "ERROR_UNKNOWN"); - } + case H5T_ORDER_LE: + h5tools_str_append(&buffer, "LE"); + break; + case H5T_ORDER_BE: + h5tools_str_append(&buffer, "BE"); + break; + case H5T_ORDER_VAX: + case H5T_ORDER_MIXED: + case H5T_ORDER_NONE: + case H5T_ORDER_ERROR: + default: + h5tools_str_append(&buffer, "ERROR_UNKNOWN"); + break; + } /* end switch */ h5tools_str_append(&buffer, "\" Sign=\""); switch (sgn) { - case H5T_SGN_NONE: - h5tools_str_append(&buffer, "false"); - break; - case H5T_SGN_2: - h5tools_str_append(&buffer, "true"); - break; - default: - h5tools_str_append(&buffer, "ERROR_UNKNOWN"); - } + case H5T_SGN_NONE: + h5tools_str_append(&buffer, "false"); + break; + case H5T_SGN_2: + h5tools_str_append(&buffer, "true"); + break; + case H5T_SGN_ERROR: + case H5T_NSGN: + default: + h5tools_str_append(&buffer, "ERROR_UNKNOWN"); + break; + } /* end switch */ h5tools_str_append(&buffer, "\" Size=\""); sz = H5Tget_size(type); @@ -1033,18 +1048,21 @@ xml_print_datatype(hid_t type, unsigned in_group) h5tools_str_append(&buffer, "<%sFloatType ByteOrder=\"",xmlnsprefix); switch (ord) { - case H5T_ORDER_LE: - h5tools_str_append(&buffer, "LE"); - break; - case H5T_ORDER_BE: - h5tools_str_append(&buffer, "BE"); - break; - case H5T_ORDER_VAX: - h5tools_str_append(&buffer, "VAX"); - break; - default: - h5tools_str_append(&buffer, "ERROR_UNKNOWN"); - } + case H5T_ORDER_LE: + h5tools_str_append(&buffer, "LE"); + break; + case H5T_ORDER_BE: + h5tools_str_append(&buffer, "BE"); + break; + case H5T_ORDER_VAX: + h5tools_str_append(&buffer, "VAX"); + break; + case H5T_ORDER_MIXED: + case H5T_ORDER_NONE: + case H5T_ORDER_ERROR: + default: + h5tools_str_append(&buffer, "ERROR_UNKNOWN"); + } /* end switch */ h5tools_str_append(&buffer, "\" Size=\""); sz = H5Tget_size(type); @@ -1172,16 +1190,19 @@ xml_print_datatype(hid_t type, unsigned in_group) h5tools_str_append(&buffer, "<%sBitfieldType ByteOrder=\"",xmlnsprefix); switch (ord) { - case H5T_ORDER_LE: - h5tools_str_append(&buffer, "LE"); - break; - case H5T_ORDER_BE: - h5tools_str_append(&buffer, "BE"); - break; - case H5T_ORDER_VAX: - default: - h5tools_str_append(&buffer, "ERROR_UNKNOWN"); - } + case H5T_ORDER_LE: + h5tools_str_append(&buffer, "LE"); + break; + case H5T_ORDER_BE: + h5tools_str_append(&buffer, "BE"); + break; + case H5T_ORDER_VAX: + case H5T_ORDER_MIXED: + case H5T_ORDER_NONE: + case H5T_ORDER_ERROR: + default: + h5tools_str_append(&buffer, "ERROR_UNKNOWN"); + } /* end switch */ size = H5Tget_size(type); h5tools_str_append(&buffer, "\" Size=\"%lu\"/>", (unsigned long)size); @@ -1516,6 +1537,10 @@ xml_print_datatype(hid_t type, unsigned in_group) H5Tclose(super); break; + case H5T_NO_CLASS: + case H5T_NCLASSES: + HDassert(0); + /* fall through */ default: ctx.need_prefix = TRUE; h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); @@ -1813,6 +1838,7 @@ xml_dump_dataspace(hid_t space) break; #endif /* TMP */ + case H5S_NULL: case H5S_NO_CLASS: default: ctx.need_prefix = TRUE; @@ -2246,6 +2272,10 @@ xml_dump_attr(hid_t attr, const char *attr_name, const H5A_info_t H5_ATTR_UNUSED dump_function_table->dump_data_function(attr_id, ATTRIBUTE_DATA, NULL, 0); break; + case H5T_NO_CLASS: + case H5T_NCLASSES: + HDassert(0); + /* fall through */ default: ctx.need_prefix = TRUE; h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); @@ -2938,9 +2968,9 @@ static int xml_print_refs(hid_t did, int source) { herr_t e; - hid_t type; - hid_t space; - hssize_t ssiz; + hid_t type = -1; + hid_t space = -1; + hssize_t ssiz = -1; hsize_t i; size_t tsiz; hobj_ref_t *refbuf = NULL; @@ -3095,11 +3125,11 @@ static int xml_print_strs(hid_t did, int source) { herr_t e; - hid_t type; - hid_t space; - hssize_t ssiz; + hid_t type = -1; + hid_t space = -1; + hssize_t ssiz = -1; htri_t is_vlstr = FALSE; - size_t tsiz; + size_t tsiz = 0; size_t i; size_t str_size = 0; char *bp = NULL; @@ -3701,6 +3731,12 @@ xml_dump_fill_value(hid_t dcpl, hid_t type) h5tools_str_append(&buffer, "<%sNoData />", xmlnsprefix); h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); break; + case H5T_NO_CLASS: + case H5T_NCLASSES: + HDassert(0); + /* fall through */ + case H5T_STRING: + case H5T_REFERENCE: default: ctx.need_prefix = TRUE; h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); @@ -4004,37 +4040,43 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s H5Pget_fill_time(dcpl, &ft); h5tools_str_append(&buffer, "FillTime=\""); switch (ft) { - case H5D_FILL_TIME_ALLOC: - h5tools_str_append(&buffer, "FillOnAlloc"); - break; - case H5D_FILL_TIME_NEVER: - h5tools_str_append(&buffer, "FillNever"); - break; - case H5D_FILL_TIME_IFSET: - h5tools_str_append(&buffer, "FillIfSet"); - break; - default: - h5tools_str_append(&buffer, "?"); - break; - } + case H5D_FILL_TIME_ALLOC: + h5tools_str_append(&buffer, "FillOnAlloc"); + break; + case H5D_FILL_TIME_NEVER: + h5tools_str_append(&buffer, "FillNever"); + break; + case H5D_FILL_TIME_IFSET: + h5tools_str_append(&buffer, "FillIfSet"); + break; + case H5D_FILL_TIME_ERROR: + HDassert(0); + /* fall through */ + default: + h5tools_str_append(&buffer, "?"); + break; + } /* end switch */ h5tools_str_append(&buffer, "\" "); H5Pget_alloc_time(dcpl, &at); h5tools_str_append(&buffer, "AllocationTime=\""); switch (at) { - case H5D_ALLOC_TIME_EARLY: - h5tools_str_append(&buffer, "Early"); - break; - case H5D_ALLOC_TIME_INCR: - h5tools_str_append(&buffer, "Incremental"); - break; - case H5D_ALLOC_TIME_LATE: - h5tools_str_append(&buffer, "Late"); - break; - case H5D_ALLOC_TIME_DEFAULT: - default: - h5tools_str_append(&buffer, "?"); - break; - } + case H5D_ALLOC_TIME_EARLY: + h5tools_str_append(&buffer, "Early"); + break; + case H5D_ALLOC_TIME_INCR: + h5tools_str_append(&buffer, "Incremental"); + break; + case H5D_ALLOC_TIME_LATE: + h5tools_str_append(&buffer, "Late"); + break; + case H5D_ALLOC_TIME_DEFAULT: + case H5D_ALLOC_TIME_ERROR: + HDassert(0); + /* fall through */ + default: + h5tools_str_append(&buffer, "?"); + break; + } /* end switch */ h5tools_str_append(&buffer, "\""); h5tools_str_append(&buffer, ">"); h5tools_render_element(rawoutstream, outputformat, &ctx, &buffer, &curr_pos, (size_t)outputformat->line_ncols, (hsize_t)0, (hsize_t)0); @@ -4255,6 +4297,11 @@ xml_dump_dataset(hid_t did, const char *name, struct subset_t H5_ATTR_UNUSED * s ctx.indent_level--; dump_indent -= COL; break; + case H5T_NO_CLASS: + case H5T_NCLASSES: + HDassert(0); + /* fall through */ + default: ctx.need_prefix = TRUE; h5tools_simple_prefix(rawoutstream, outputformat, &ctx, (hsize_t)0, 0); diff --git a/tools/h5import/Makefile.in b/tools/h5import/Makefile.in deleted file mode 100644 index 3185d72..0000000 --- a/tools/h5import/Makefile.in +++ /dev/null @@ -1,1431 +0,0 @@ -# Makefile.in generated by automake 1.14.1 from Makefile.am. -# @configure_input@ - -# Copyright (C) 1994-2013 Free Software Foundation, Inc. - -# This Makefile.in is free software; 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Also build EXTRA_LIB and EXTRA_PROG since -# Automake won't build them automatically, either. -all-local: $(EXTRA_LIB) $(EXTRA_PROG) $(chk_TESTS) - -# make install-doc doesn't do anything outside of doc directory, but -# Makefiles should recognize it. -# UPDATE: docs no longer reside in this build tree, so this target -# is depreciated. -install-doc uninstall-doc: - @echo "Nothing to be done." - -# clean up files generated by tests so they can be re-run. -build-check-clean: - $(RM) -rf $(CHECK_CLEANFILES) - -# run check-clean whenever mostlyclean is run -mostlyclean-local: build-check-clean - -# check-install is just a synonym for installcheck -check-install: installcheck - -# Run each test in order, passing $(TEST_FLAGS) to the program. -# Since tests are done in a shell loop, "make -i" does apply inside it. -# Set HDF5_Make_Ignore to a non-blank string to ignore errors inside the loop. -# The timestamps give a rough idea how much time the tests use. -# -# Note that targets in chk_TESTS (defined above) will be built when the user -# types 'make tests' or 'make check', but only programs in TEST_PROG, -# TEST_PROG_PARA, or TEST_SCRIPT will actually be executed. -check-TESTS: test - -test _test: - @$(MAKE) build-check-s - @$(MAKE) build-check-p - -# Actual execution of check-s. -build-check-s: $(LIB) $(PROGS) $(chk_TESTS) - @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ - echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ - fi - @$(MAKE) $(AM_MAKEFLAGS) _exec_check-s - @if test -n "$(TEST_PROG)$(TEST_SCRIPT)"; then \ - echo "===Serial tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\ - fi - -_exec_check-s: $(TEST_PROG_CHKEXE) $(TEST_SCRIPT_CHKSH) - -# The dummy.chkexe here prevents the target from being -# empty if there are no tests in the current directory. -# $${log} is the log file. -# $${tname} is the name of test. -$(TEST_PROG_CHKEXE) $(TEST_PROG_PARA_CHKEXE) dummy.chkexe_: - @if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummy.chkexe_"; then \ - tname=$(@:.chkexe_=)$(EXEEXT);\ - log=$(@:.chkexe_=.chklog); \ - echo "============================"; \ - if $(top_srcdir)/bin/newer $(@:.chkexe_=.chkexe) $${tname}; then \ - echo "No need to test $${tname} again."; \ - else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log};\ - else \ - echo "Testing $(HDF5_DRIVER) $${tname} $(TEST_FLAGS)"; \ - echo "$(HDF5_DRIVER) $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - srcdir="$(srcdir)" \ - $(TIME) $(RUNEXEC) ./$${tname} $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $(@:.chkexe_=.chkexe) || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ - echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ - fi; \ - fi - -# The dummysh.chkexe here prevents the target from being -# empty if there are no tests in the current directory. -# $${log} is the log file. -# $${tname} is the name of test. -$(TEST_SCRIPT_CHKSH) $(TEST_SCRIPT_PARA_CHKSH) dummysh.chkexe_: - @if test "X$@" != "X.chkexe_" && test "X$@" != "Xdummysh.chkexe_"; then \ - cmd=$(@:.chkexe_=);\ - tname=`basename $$cmd`;\ - chkname=`basename $(@:.chkexe_=.chkexe)`;\ - log=`basename $(@:.chkexe_=.chklog)`; \ - echo "============================"; \ - if $(top_srcdir)/bin/newer $${chkname} $$cmd $(SCRIPT_DEPEND); then \ - echo "No need to test $${tname} again."; \ - else \ - echo "============================" > $${log}; \ - if test "X$(FORTRAN_API)" = "Xyes"; then \ - echo "Fortran API: Testing $${tname} $(TEST_FLAGS)"; \ - echo "Fortran API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - elif test "X$(CXX_API)" = "Xyes"; then \ - echo "C++ API: Testing $${tname} $(TEST_FLAGS)"; \ - echo "C++ API: $${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - else \ - echo "Testing $${tname} $(TEST_FLAGS)"; \ - echo "$${tname} $(TEST_FLAGS) Test Log" >> $${log}; \ - fi; \ - echo "============================" >> $${log}; \ - RUNSERIAL="$(RUNSERIAL)" RUNPARALLEL="$(RUNPARALLEL)" \ - srcdir="$(srcdir)" \ - $(TIME) $(SHELL) $$cmd $(TEST_FLAGS) >> $${log} 2>&1 \ - && touch $${chkname} || \ - (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ - (cat $${log} && false) || exit 1; \ - echo "" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ - echo "============================" >> $${log}; \ - echo "Finished testing $${tname} $(TEST_FLAGS)"; \ - cat $${log}; \ - fi; \ - echo "============================"; \ - fi - -# Actual execution of check-p. -build-check-p: $(LIB) $(PROGS) $(chk_TESTS) - @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ - echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ - fi - @if test -n "$(TEST_PROG_PARA)"; then \ - echo "**** Hint ****"; \ - echo "Parallel test files reside in the current directory" \ - "by default."; \ - echo "Set HDF5_PARAPREFIX to use another directory. E.g.,"; \ - echo " HDF5_PARAPREFIX=/PFS/user/me"; \ - echo " export HDF5_PARAPREFIX"; \ - echo " make check"; \ - echo "**** end of Hint ****"; \ - fi - @for test in $(TEST_PROG_PARA) dummy; do \ - if test $$test != dummy; then \ - $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \ - RUNEXEC="$(RUNPARALLEL)" || exit 1; \ - fi; \ - done - @for test in $(TEST_SCRIPT_PARA) dummy; do \ - if test $$test != dummy; then \ - $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \ - fi; \ - done - @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ - echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\ - fi - -# Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(chk_TESTS) - @for vfd in $(VFD_LIST) dummy; do \ - if test $$vfd != dummy; then \ - echo "============================"; \ - echo "Testing Virtual File Driver $$vfd"; \ - echo "============================"; \ - $(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1; \ - HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ - fi; \ - done - -# Tell versions [3.59,3.63) of GNU make to not export all variables. -# Otherwise a system limit (for SysV at least) may be exceeded. -.NOEXPORT: diff --git a/tools/h5repack/h5repack.sh.in b/tools/h5repack/h5repack.sh.in index 4a32491..1796151 100644 --- a/tools/h5repack/h5repack.sh.in +++ b/tools/h5repack/h5repack.sh.in @@ -18,7 +18,7 @@ # Modification: # Pedro Vicente Nunes, 11/15/2006 # Added $FILEN variables for file names -# +# srcdir=@srcdir@ @@ -32,7 +32,7 @@ EXIT_FAILURE=1 H5REPACK=h5repack # The tool name H5REPACK_BIN=`pwd`/$H5REPACK # The path of the tool binary -H5DIFF=../h5diff/h5diff # The h5diff tool name +H5DIFF=../h5diff/h5diff # The h5diff tool name H5DIFF_BIN=`pwd`/$H5DIFF # The path of the h5diff tool binary H5DUMP=../h5dump/h5dump # The h5dump tool name @@ -45,8 +45,8 @@ DIRNAME='dirname' LS='ls' AWK='awk' -H5DETECTSZIP=testh5repack_detect_szip -H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP +H5DETECTSZIP=testh5repack_detect_szip +H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP nerrors=0 @@ -151,7 +151,7 @@ COPY_TESTFILES_TO_TESTDIR() $CP -f $tstfile $TESTDIR if [ $? -ne 0 ]; then echo "Error: FAILED to copy $tstfile ." - + # Comment out this to CREATE expected file exit $EXIT_FAILURE fi @@ -203,12 +203,12 @@ SKIP() { # Call the h5diff tool # -DIFFTEST() +DIFFTEST() { VERIFY h5diff output $@ ( cd $TESTDIR - $RUNSERIAL $H5DIFF_BIN -q "$@" + $RUNSERIAL $H5DIFF_BIN -q "$@" ) RET=$? if [ $RET != 0 ] ; then @@ -217,7 +217,7 @@ DIFFTEST() else echo " PASSED" fi - + } # Call h5repack @@ -225,7 +225,7 @@ DIFFTEST() # call TOOLTEST_MAIN and delete $output file -TOOLTEST() +TOOLTEST() { echo $@ infile=$2 @@ -251,7 +251,7 @@ TOOLTEST() } #------------------------------------------ -# Verifying layouts of a dataset +# Verifying layouts of a dataset VERIFY_LAYOUT_DSET() { layoutfile=layout-$1.$2 @@ -263,9 +263,9 @@ VERIFY_LAYOUT_DSET() shift shift shift - + TESTING $H5REPACK $@ - ( + ( cd $TESTDIR $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile ) @@ -277,7 +277,7 @@ VERIFY_LAYOUT_DSET() echo " PASSED" DIFFTEST $infile $outfile fi - + #--------------------------------- # check the layout from a dataset VERIFY "a dataset layout" @@ -309,9 +309,9 @@ VERIFY_LAYOUT_ALL() shift shift shift - + TESTING $H5REPACK $@ - ( + ( cd $TESTDIR $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile ) @@ -323,8 +323,8 @@ VERIFY_LAYOUT_ALL() echo " PASSED" DIFFTEST $infile $outfile fi - - + + #--------------------------------- # check the layout from a dataset # check if the other layouts still exsit @@ -351,7 +351,7 @@ VERIFY_LAYOUT_ALL() echo " PASSED" fi fi - else + else # if COMPACT if [ $expectlayout = "COMPACT" ]; then TESTING $H5DUMP_BIN -pH $outfile @@ -403,7 +403,7 @@ VERIFY_LAYOUT_ALL() # same as TOOLTEST, but it uses the old syntax -i input_file -o output_file # -TOOLTEST0() +TOOLTEST0() { infile=$2 outfile=out-$1.$2 @@ -431,7 +431,7 @@ TOOLTEST0() # same as TOOLTEST, but it uses without -i -o options # used to test the family driver, where these files reside # -TOOLTEST1() +TOOLTEST1() { infile=$2 outfile=out-$1.$2 @@ -454,11 +454,11 @@ TOOLTEST1() fi rm -f $outfile } - + # This is same as TOOLTEST() with comparing display output # from -v option # -TOOLTESTV() +TOOLTESTV() { expect="$TESTDIR/$2.tst" actual="$TESTDIR/`basename $2 .ddl`.out" @@ -468,7 +468,7 @@ TOOLTESTV() outfile=out-$1.$2 shift shift - + # Run test. TESTING $H5REPACK $@ ( @@ -497,15 +497,15 @@ TOOLTESTV() nerrors="`expr $nerrors + 1`" test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /' fi - + rm -f $actual $actual_err rm -f $outfile } - + # This is same as TOOLTESTV() with comparing h5dump output # from -pH option # -TOOLTEST_DUMP() +TOOLTEST_DUMP() { infile=$2 outfile=out-$1.$2 @@ -515,7 +515,7 @@ TOOLTEST_DUMP() shift shift - + # Run test. TESTING $H5REPACK $@ ( @@ -531,12 +531,12 @@ TOOLTEST_DUMP() VERIFY h5dump output $@ ( cd $TESTDIR - $RUNSERIAL $H5DUMP_BIN -pH $outfile + $RUNSERIAL $H5DUMP_BIN -pH $outfile ) >$actual 2>$actual_err cat $actual_err >> $actual RET=$? - + fi if cmp -s $expect $actual; then @@ -547,7 +547,7 @@ TOOLTEST_DUMP() nerrors="`expr $nerrors + 1`" test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /' fi - + rm -f $actual $actual_err rm -f $outfile } @@ -618,7 +618,7 @@ TOOLTEST_META() echo "*FAILED*" nerrors="`expr $nerrors + 1`" fi - + rm -f $outfile } # ADD_HELP_TEST @@ -648,7 +648,7 @@ TOOLTEST_HELP() { echo " Expected output (*.txt) differs from actual output (*.out)" nerrors="`expr $nerrors + 1`" fi - + # Clean up output file if test -z "$HDF5_NOCLEANUP"; then rm -f $actual $actual_err @@ -674,28 +674,28 @@ STDOUT_FILTER() { # Each run generates "<file>.out.h5" and the tool h5diff is used to # compare the input and output files # -# the tests are the same as the program h5repacktst, but run from the CLI +# the tests are the same as the program h5repacktst, but run from the CLI # # See which filters are usable (and skip tests for filters we # don't have). Do this by searching H5pubconf.h to see which # filters are defined. -# detect whether the encoder is present. +# detect whether the encoder is present. USE_FILTER_SZIP_ENCODER="no"; if test $USE_FILTER_SZIP = "yes"; then USE_FILTER_SZIP_ENCODER=`$RUNSERIAL $H5DETECTSZIP_BIN` fi ############################################################################## -### T H E T E S T S +### T H E T E S T S ############################################################################## # prepare for test COPY_TESTFILES_TO_TESTDIR TOOLTEST_HELP h5repack-help.txt -h -# copy files (these files have no filters) +# copy files (these files have no filters) TOOLTEST fill h5repack_fill.h5 TOOLTEST objs h5repack_objs.h5 TOOLTEST attr h5repack_attr.h5 @@ -719,8 +719,8 @@ if test $USE_FILTER_DEFLATE != "yes" ; then else TOOLTEST gzip_individual $arg fi - -# gzip for all + +# gzip for all arg="h5repack_layout.h5 -f GZIP=1" if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg @@ -733,7 +733,7 @@ arg="h5repack_layout.h5 -f dset2:SZIP=8,EC -l dset2:CHUNK=20x10" if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then SKIP $arg else - TOOLTEST szip_individual $arg + TOOLTEST szip_individual $arg fi # szip for all @@ -741,18 +741,18 @@ arg="h5repack_layout.h5 -f SZIP=8,NN" if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then SKIP $arg else - TOOLTEST szip_all $arg + TOOLTEST szip_all $arg fi # shuffle with individual object arg="h5repack_layout.h5 -f dset2:SHUF -l dset2:CHUNK=20x10" -TOOLTEST shuffle_individual $arg - +TOOLTEST shuffle_individual $arg + # shuffle for all arg="h5repack_layout.h5 -f SHUF" TOOLTEST shuffle_all $arg - + # fletcher32 with individual object arg="h5repack_layout.h5 -f dset2:FLET -l dset2:CHUNK=20x10" TOOLTEST fletcher_individual $arg @@ -777,7 +777,7 @@ else # compare output TOOLTESTV gzip_verbose_filters $arg fi - + ########################################################### # the following tests assume the input files have filters ########################################################### @@ -789,7 +789,7 @@ if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then else TOOLTEST szip_copy $arg fi - + # szip remove arg="h5repack_szip.h5 --filter=dset_szip:NONE" if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then @@ -797,7 +797,7 @@ if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then else TOOLTEST szip_remove $arg fi - + # deflate copy arg="h5repack_deflate.h5" if test $USE_FILTER_DEFLATE != "yes" ; then @@ -813,7 +813,7 @@ if test $USE_FILTER_DEFLATE != "yes" ; then else TOOLTEST deflate_remove $arg fi - + # shuffle copy arg="h5repack_shuffle.h5" TOOLTEST shuffle_copy $arg @@ -868,14 +868,14 @@ arg="h5repack_deflate.h5 -f dset_deflate:SZIP=8,NN" if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST deflate_convert $arg + TOOLTEST deflate_convert $arg fi arg="h5repack_szip.h5 -f dset_szip:GZIP=1" if test $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else - TOOLTEST szip_convert $arg + TOOLTEST szip_convert $arg fi @@ -890,9 +890,9 @@ fi #file arg="h5repack_layout.h5 -e h5repack.info" if test $USE_FILTER_DEFLATE != "yes" ; then - SKIP $arg + SKIP $arg else - TOOLTEST deflate_file $arg + TOOLTEST deflate_file $arg fi ######################################################### @@ -937,18 +937,18 @@ VERIFY_LAYOUT_DSET contig_small_compa h5repack_layout2.h5 contig_small COMPACT - VERIFY_LAYOUT_DSET contig_small_fixed_compa h5repack_layout2.h5 chunked_small_fixed COMPACT -l chunked_small_fixed:COMPA -#--------------------------------------------------------------------------- -# Test file contains chunked datasets (need multiple dsets) with +#--------------------------------------------------------------------------- +# Test file contains chunked datasets (need multiple dsets) with # unlimited max dims. (HDFFV-7933) # Use first dset to test. #--------------------------------------------------------------------------- # chunk to chunk - specify chunk dim bigger than any current dim VERIFY_LAYOUT_DSET chunk2chunk h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:CHUNK=100x300 -# chunk to contiguous +# chunk to contiguous VERIFY_LAYOUT_DSET chunk2conti h5repack_layout3.h5 chunk_unlimit1 CONTI -l chunk_unlimit1:CONTI -# chunk to compact - convert big dataset (should be > 64k) for this purpose, +# chunk to compact - convert big dataset (should be > 64k) for this purpose, # should remain as original layout (chunk) VERIFY_LAYOUT_DSET chunk2compa h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:COMPA @@ -956,7 +956,7 @@ VERIFY_LAYOUT_DSET chunk2compa h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk # Test -f for some specific cases. Chunked dataset with unlimited max dims. # (HDFFV-8012) #-------------------------------------------------------------------------- -# - should not fail +# - should not fail # - should not change max dims from unlimit # chunk dim is bigger than dataset dim. ( dset size < 64k ) @@ -972,14 +972,14 @@ VERIFY_LAYOUT_DSET error3 h5repack_layout3.h5 chunk_unlimit3 H5S_UNLIMITED -f ch TOOLTEST error4 h5repack_layout3.h5 -f NONE #-------------------------------------------------------------------------- -# Test base: Convert CHUNK to CONTI for a chunked dataset with small dataset +# Test base: Convert CHUNK to CONTI for a chunked dataset with small dataset # (dset size < 64K) and with unlimited max dims on a condition as follow. # (HDFFV-8214) #-------------------------------------------------------------------------- # chunk dim is bigger than dataset dim. should succeed. VERIFY_LAYOUT_DSET ckdim_biger h5repack_layout3.h5 chunk_unlimit2 CONTI -l chunk_unlimit2:CONTI -# chunk dim is smaller than dataset dim. should succeed. +# chunk dim is smaller than dataset dim. should succeed. VERIFY_LAYOUT_DSET ckdim_smaller h5repack_layout3.h5 chunk_unlimit3 CONTI -l chunk_unlimit3:CONTI @@ -1022,7 +1022,7 @@ if test $USE_FILTER_DEFLATE != "yes" ; then SKIP $arg else TOOLTEST0 old_style_layout_short_switches $arg -fi +fi # add a userblock to file arg="h5repack_objs.h5 -u ublock.bin -b 2048" @@ -1049,17 +1049,17 @@ TOOLTEST1 family tfamily%05d.h5 TOOLTEST bug1814 h5repack_refs.h5 # test attribute with various references (bug1797 / HDFFV-5932) -# the references in attribute of compund or vlen datatype -TOOLTEST HDFFV-5932 h5repack_attr_refs.h5 +# the references in attribute of compund or vlen datatype +TOOLTEST HDFFV-5932 h5repack_attr_refs.h5 -# Add test for memory leak in attirbute. This test is verified by CTEST. -# 1. leak from vlen string +# Add test for memory leak in attirbute. This test is verified by CTEST. +# 1. leak from vlen string # 2. leak from compound type without reference member # (HDFFV-7840, ) # Note: this test is experimental for sharing test file among tools TOOLTEST HDFFV-7840 h5diff_attr1.h5 -# tests for metadata block size option +# tests for metadata block size option TOOLTEST_META meta_short h5repack_layout.h5 -M 8192 TOOLTEST_META meta_long h5repack_layout.h5 --metadata_block_size=8192 diff --git a/tools/h5repack/h5repack_parse.c b/tools/h5repack/h5repack_parse.c index 8a297a7..1d71c13 100644 --- a/tools/h5repack/h5repack_parse.c +++ b/tools/h5repack/h5repack_parse.c @@ -47,473 +47,473 @@ obj_list_t* parse_filter(const char *str, - int *n_objs, - filter_info_t *filt, - pack_opt_t *options, - int *is_glb) + int *n_objs, + filter_info_t *filt, + pack_opt_t *options, + int *is_glb) { - unsigned i, u; - char c; - size_t len=HDstrlen(str); - int j, m, n, k, l, p, r, q, end_obj=-1, no_param=0; - char sobj[MAX_NC_NAME]; - char scomp[10]; - char stype[5]; - char smask[3]; - obj_list_t* obj_list=NULL; - unsigned pixels_per_block; - - - /* initialize compression info */ - HDmemset(filt,0,sizeof(filter_info_t)); - *is_glb = 0; - - /* check for the end of object list and number of objects */ - for ( i = 0, n = 0; i < len; i++) - { - c = str[i]; - if ( c==':' ) - { - end_obj=i; - } - if ( c==',' ) - { - n++; - } - } - - if (end_obj==-1) /* missing : */ - { - /* apply to all objects */ - options->all_filter=1; - *is_glb = 1; - } - - n++; - obj_list = (obj_list_t*) HDmalloc(n*sizeof(obj_list_t)); - if (obj_list==NULL) - { - error_msg("could not allocate object list\n"); - return NULL; - } - *n_objs=n; - - /* get object list */ - for ( j = 0, k = 0, n = 0; j < end_obj; j++, k++) - { - c = str[j]; - sobj[k] = c; - if ( c==',' || j==end_obj-1) - { - if ( c==',') sobj[k]='\0'; else sobj[k+1]='\0'; - HDstrcpy(obj_list[n].obj,sobj); - HDmemset(sobj,0,sizeof(sobj)); - n++; - k=-1; - } - } - /* nothing after : */ - if (end_obj+1==(int)len) - { - if (obj_list) HDfree(obj_list); - error_msg("input Error: Invalid compression type in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - - - /* get filter additional parameters */ - m=0; - for ( i=end_obj+1, k=0, j=0; i<len; i++,k++) - { - c = str[i]; - scomp[k]=c; - if ( c=='=' || i==len-1) - { - if ( c=='=') /*one more parameter */ - { - scomp[k]='\0'; /*cut space */ - - /*------------------------------------------------------------------------- - * H5Z_FILTER_SZIP - * szip has the format SZIP=<pixels per block,coding> - * pixels per block is a even number in 2-32 and coding method is 'EC' or 'NN' - * example SZIP=8,NN - *------------------------------------------------------------------------- - */ - if (HDstrcmp(scomp,"SZIP")==0) - { - l=-1; /* mask index check */ - for ( m=0,u=i+1; u<len; u++,m++) - { - if (str[u]==',') - { - stype[m]='\0'; /* end digit of szip */ - l=0; /* start EC or NN search */ - u++; /* skip ',' */ - } - c = str[u]; - if (!isdigit(c) && l==-1) - { - if (obj_list) HDfree(obj_list); - error_msg("compression parameter not digit in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - if (l==-1) - stype[m]=c; - else - { - smask[l]=c; - l++; - if (l==2) - { - smask[l]='\0'; - i=len-1; /* end */ - (*n_objs)--; /* we counted an extra ',' */ - if (HDstrcmp(smask,"NN")==0) - filt->cd_values[j++]=H5_SZIP_NN_OPTION_MASK; - else if (HDstrcmp(smask,"EC")==0) - filt->cd_values[j++]=H5_SZIP_EC_OPTION_MASK; - else - { - error_msg("szip mask must be 'NN' or 'EC' \n"); - HDexit(EXIT_FAILURE); - } - - - } - } - - } /* u */ - } /*if */ - - /*------------------------------------------------------------------------- - * H5Z_FILTER_SCALEOFFSET - * scaleoffset has the format SOFF=<scale_factor,scale_type> - * scale_type can be - * integer datatype, H5Z_SO_INT (IN) - * float datatype using D-scaling method, H5Z_SO_FLOAT_DSCALE (DS) - * float datatype using E-scaling method, H5Z_SO_FLOAT_ESCALE (ES) , not yet implemented - * for integer datatypes, scale_factor denotes Minimum Bits - * for float datatypes, scale_factor denotes decimal scale factor - * examples - * SOFF=31,IN - * SOFF=3,DF - *------------------------------------------------------------------------- - */ - - else if (HDstrcmp(scomp,"SOFF")==0) - { - l=-1; /* mask index check */ - for ( m=0,u=i+1; u<len; u++,m++) - { - if (str[u]==',') - { - stype[m]='\0'; /* end digit */ - l=0; /* start 'IN' , 'DS', or 'ES' search */ - u++; /* skip ',' */ - } - c = str[u]; - if (!isdigit(c) && l==-1) - { - if (obj_list) HDfree(obj_list); - error_msg("compression parameter is not a digit in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - if (l==-1) - stype[m]=c; - else - { - smask[l]=c; - l++; - if (l==2) - { - smask[l]='\0'; - i=len-1; /* end */ - (*n_objs)--; /* we counted an extra ',' */ - if (HDstrcmp(smask,"IN")==0) - filt->cd_values[j++]=H5Z_SO_INT; - else if (HDstrcmp(smask,"DS")==H5Z_SO_FLOAT_DSCALE) - filt->cd_values[j++]=H5Z_SO_FLOAT_DSCALE; - else - { - error_msg("scale type must be 'IN' or 'DS' \n"); - HDexit(EXIT_FAILURE); - } - - } - } - - } /* u */ - } /*if */ - /*------------------------------------------------------------------------- - * User Defined - * has the format UD=<filter_number,cd_value_count,value_1[,value_2,...,value_N]> - * BZIP2 example - * UD=307,1,9 - *------------------------------------------------------------------------- - */ - - else if (HDstrcmp(scomp,"UD")==0) - { - l=-1; /* filter number index check */ - p=-1; /* CD_VAL count check */ - r=-1; /* CD_VAL check */ - for ( m=0,q=0,u=i+1; u<len; u++,m++,q++) - { - if (str[u]==',') - { - stype[q]='\0'; /* end digit */ - if (l==-1) - { - filt->filtn=atoi(stype); - l=0; - } - else if (p==-1) - { - filt->cd_nelmts=atoi(stype); - p=0; - } - else - r=0; - q=0; - u++; /* skip ',' */ - } - c = str[u]; - if (!isdigit(c) && l==-1) - { - if (obj_list) HDfree(obj_list); - error_msg("filter number parameter is not a digit in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - stype[q]=c; - if (l==0 && p==0) - { - if (r==0) - filt->cd_values[j++]=atoi(stype); - } - - } /* u */ - - stype[q]='\0'; - } /*if */ - - - /*------------------------------------------------------------------------- - * all other filters - *------------------------------------------------------------------------- - */ - - else - { - /* here we could have 1 or 2 digits */ - for ( m=0,u=i+1; u<len; u++,m++) - { - c = str[u]; - if (!isdigit(c)){ - if (obj_list) HDfree(obj_list); - error_msg("compression parameter is not a digit in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - stype[m]=c; - } /* u */ - - stype[m]='\0'; - } /*if */ - - - - filt->cd_values[j++]=atoi(stype); - i+=m; /* jump */ - } - else if (i==len-1) - { /*no more parameters */ - scomp[k+1]='\0'; - no_param=1; - } - - /*------------------------------------------------------------------------- - * translate from string to filter symbol - *------------------------------------------------------------------------- - */ - - /*------------------------------------------------------------------------- - * H5Z_FILTER_NONE - *------------------------------------------------------------------------- - */ - if (HDstrcmp(scomp,"NONE")==0) - { - filt->filtn=H5Z_FILTER_NONE; - filt->cd_nelmts = 0; - } - - /*------------------------------------------------------------------------- - * H5Z_FILTER_DEFLATE - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"GZIP")==0) - { - filt->filtn=H5Z_FILTER_DEFLATE; - filt->cd_nelmts = 1; - if (no_param) - { /*no more parameters, GZIP must have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("missing compression parameter in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - } - - /*------------------------------------------------------------------------- - * H5Z_FILTER_SZIP - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"SZIP")==0) - { - filt->filtn=H5Z_FILTER_SZIP; - filt->cd_nelmts = 2; - if (no_param) - { /*no more parameters, SZIP must have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("missing compression parameter in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - } - - /*------------------------------------------------------------------------- - * H5Z_FILTER_SHUFFLE - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"SHUF")==0) - { - filt->filtn=H5Z_FILTER_SHUFFLE; - filt->cd_nelmts = 0; - if (m>0) - { /*shuffle does not have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("extra parameter in SHUF <%s>\n",str); - HDexit(EXIT_FAILURE); - } - } - /*------------------------------------------------------------------------- - * H5Z_FILTER_FLETCHER32 - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"FLET")==0) - { - filt->filtn=H5Z_FILTER_FLETCHER32; - filt->cd_nelmts = 0; - if (m>0) - { /*shuffle does not have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("extra parameter in FLET <%s>\n",str); - HDexit(EXIT_FAILURE); - } - } - /*------------------------------------------------------------------------- - * H5Z_FILTER_NBIT - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"NBIT")==0) - { - filt->filtn=H5Z_FILTER_NBIT; - filt->cd_nelmts = 0; - if (m>0) - { /*nbit does not have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("extra parameter in NBIT <%s>\n",str); - HDexit(EXIT_FAILURE); - } - } - /*------------------------------------------------------------------------- - * H5Z_FILTER_SCALEOFFSET - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"SOFF")==0) - { - filt->filtn=H5Z_FILTER_SCALEOFFSET; - filt->cd_nelmts = 2; - if (no_param) - { /*no more parameters, SOFF must have parameter */ - if (obj_list) HDfree(obj_list); - error_msg("missing compression parameter in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - } - /*------------------------------------------------------------------------- - * User Defined Filter - *------------------------------------------------------------------------- - */ - else if (HDstrcmp(scomp,"UD")==0) - { - if (filt->cd_nelmts != j) - { /* parameters does not match count */ - if (obj_list) HDfree(obj_list); - error_msg("incorrect number of compression parameters in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - } - else { - if (obj_list) HDfree(obj_list); - error_msg("invalid filter type in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - } - } /*i*/ - - /*------------------------------------------------------------------------- - * check valid parameters - *------------------------------------------------------------------------- - */ - - switch (filt->filtn) - { - - /*------------------------------------------------------------------------- - * H5Z_FILTER_DEFLATE - *------------------------------------------------------------------------- - */ - - case H5Z_FILTER_DEFLATE: - if (filt->cd_values[0]>9 ) - { - if (obj_list) HDfree(obj_list); - error_msg("invalid compression parameter in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - break; - - /*------------------------------------------------------------------------- - * H5Z_FILTER_SZIP - *------------------------------------------------------------------------- - */ - - case H5Z_FILTER_SZIP: - pixels_per_block=filt->cd_values[0]; - if ((pixels_per_block%2)==1) - { - if (obj_list) HDfree(obj_list); - error_msg("pixels_per_block is not even in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - if (pixels_per_block>H5_SZIP_MAX_PIXELS_PER_BLOCK) - { - if (obj_list) HDfree(obj_list); - error_msg("pixels_per_block is too large in <%s>\n",str); - HDexit(EXIT_FAILURE); - } - if ( (HDstrcmp(smask,"NN")!=0) && (HDstrcmp(smask,"EC")!=0) ) - { - if (obj_list) HDfree(obj_list); - error_msg("szip mask must be 'NN' or 'EC' \n"); - HDexit(EXIT_FAILURE); - } - break; - default: - break; - - - }; - - return obj_list; + unsigned i, u; + char c; + size_t len=HDstrlen(str); + int j, m, n, k, l, p, r, q, end_obj=-1, no_param=0; + char sobj[MAX_NC_NAME]; + char scomp[10]; + char stype[6]; + char smask[3]; + obj_list_t* obj_list=NULL; + unsigned pixels_per_block; + + + /* initialize compression info */ + HDmemset(filt,0,sizeof(filter_info_t)); + *is_glb = 0; + + /* check for the end of object list and number of objects */ + for ( i = 0, n = 0; i < len; i++) + { + c = str[i]; + if ( c==':' ) + { + end_obj=i; + } + if ( c==',' ) + { + n++; + } + } + + if (end_obj==-1) /* missing : */ + { + /* apply to all objects */ + options->all_filter=1; + *is_glb = 1; + } + + n++; + obj_list = (obj_list_t*) HDmalloc(n*sizeof(obj_list_t)); + if (obj_list==NULL) + { + error_msg("could not allocate object list\n"); + return NULL; + } + *n_objs=n; + + /* get object list */ + for ( j = 0, k = 0, n = 0; j < end_obj; j++, k++) + { + c = str[j]; + sobj[k] = c; + if ( c==',' || j==end_obj-1) + { + if ( c==',') sobj[k]='\0'; else sobj[k+1]='\0'; + HDstrcpy(obj_list[n].obj,sobj); + HDmemset(sobj,0,sizeof(sobj)); + n++; + k=-1; + } + } + /* nothing after : */ + if (end_obj+1==(int)len) + { + if (obj_list) HDfree(obj_list); + error_msg("input Error: Invalid compression type in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + + + /* get filter additional parameters */ + m=0; + for ( i=end_obj+1, k=0, j=0; i<len; i++,k++) + { + c = str[i]; + scomp[k]=c; + if ( c=='=' || i==len-1) + { + if ( c=='=') /*one more parameter */ + { + scomp[k]='\0'; /*cut space */ + + /*------------------------------------------------------------------------- + * H5Z_FILTER_SZIP + * szip has the format SZIP=<pixels per block,coding> + * pixels per block is a even number in 2-32 and coding method is 'EC' or 'NN' + * example SZIP=8,NN + *------------------------------------------------------------------------- + */ + if (HDstrcmp(scomp,"SZIP")==0) + { + l=-1; /* mask index check */ + for ( m=0,u=i+1; u<len; u++,m++) + { + if (str[u]==',') + { + stype[m]='\0'; /* end digit of szip */ + l=0; /* start EC or NN search */ + u++; /* skip ',' */ + } + c = str[u]; + if (!isdigit(c) && l==-1) + { + if (obj_list) HDfree(obj_list); + error_msg("compression parameter not digit in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + if (l==-1) + stype[m]=c; + else + { + smask[l]=c; + l++; + if (l==2) + { + smask[l]='\0'; + i=len-1; /* end */ + (*n_objs)--; /* we counted an extra ',' */ + if (HDstrcmp(smask,"NN")==0) + filt->cd_values[j++]=H5_SZIP_NN_OPTION_MASK; + else if (HDstrcmp(smask,"EC")==0) + filt->cd_values[j++]=H5_SZIP_EC_OPTION_MASK; + else + { + error_msg("szip mask must be 'NN' or 'EC' \n"); + HDexit(EXIT_FAILURE); + } + + + } + } + + } /* u */ + } /*if */ + + /*------------------------------------------------------------------------- + * H5Z_FILTER_SCALEOFFSET + * scaleoffset has the format SOFF=<scale_factor,scale_type> + * scale_type can be + * integer datatype, H5Z_SO_INT (IN) + * float datatype using D-scaling method, H5Z_SO_FLOAT_DSCALE (DS) + * float datatype using E-scaling method, H5Z_SO_FLOAT_ESCALE (ES) , not yet implemented + * for integer datatypes, scale_factor denotes Minimum Bits + * for float datatypes, scale_factor denotes decimal scale factor + * examples + * SOFF=31,IN + * SOFF=3,DF + *------------------------------------------------------------------------- + */ + + else if (HDstrcmp(scomp,"SOFF")==0) + { + l=-1; /* mask index check */ + for ( m=0,u=i+1; u<len; u++,m++) + { + if (str[u]==',') + { + stype[m]='\0'; /* end digit */ + l=0; /* start 'IN' , 'DS', or 'ES' search */ + u++; /* skip ',' */ + } + c = str[u]; + if (!isdigit(c) && l==-1) + { + if (obj_list) HDfree(obj_list); + error_msg("compression parameter is not a digit in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + if (l==-1) + stype[m]=c; + else + { + smask[l]=c; + l++; + if (l==2) + { + smask[l]='\0'; + i=len-1; /* end */ + (*n_objs)--; /* we counted an extra ',' */ + if (HDstrcmp(smask,"IN")==0) + filt->cd_values[j++]=H5Z_SO_INT; + else if (HDstrcmp(smask,"DS")==H5Z_SO_FLOAT_DSCALE) + filt->cd_values[j++]=H5Z_SO_FLOAT_DSCALE; + else + { + error_msg("scale type must be 'IN' or 'DS' \n"); + HDexit(EXIT_FAILURE); + } + + } + } + + } /* u */ + } /*if */ + /*------------------------------------------------------------------------- + * User Defined + * has the format UD=<filter_number,cd_value_count,value_1[,value_2,...,value_N]> + * BZIP2 example + * UD=307,1,9 + *------------------------------------------------------------------------- + */ + + else if (HDstrcmp(scomp,"UD")==0) + { + l=-1; /* filter number index check */ + p=-1; /* CD_VAL count check */ + r=-1; /* CD_VAL check */ + for ( m=0,q=0,u=i+1; u<len; u++,m++,q++) + { + if (str[u]==',') + { + stype[q]='\0'; /* end digit */ + if (l==-1) + { + filt->filtn=atoi(stype); + l=0; + } + else if (p==-1) + { + filt->cd_nelmts=atoi(stype); + p=0; + } + else + r=0; + q=0; + u++; /* skip ',' */ + } + c = str[u]; + if (!isdigit(c) && l==-1) + { + if (obj_list) HDfree(obj_list); + error_msg("filter number parameter is not a digit in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + stype[q]=c; + if (l==0 && p==0) + { + if (r==0) + filt->cd_values[j++]=atoi(stype); + } + + } /* u */ + + stype[q]='\0'; + } /*if */ + + + /*------------------------------------------------------------------------- + * all other filters + *------------------------------------------------------------------------- + */ + + else + { + /* here we could have 1 or 2 digits */ + for ( m=0,u=i+1; u<len; u++,m++) + { + c = str[u]; + if (!isdigit(c)){ + if (obj_list) HDfree(obj_list); + error_msg("compression parameter is not a digit in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + stype[m]=c; + } /* u */ + + stype[m]='\0'; + } /*if */ + + + + filt->cd_values[j++]=atoi(stype); + i+=m; /* jump */ + } + else if (i==len-1) + { /*no more parameters */ + scomp[k+1]='\0'; + no_param=1; + } + + /*------------------------------------------------------------------------- + * translate from string to filter symbol + *------------------------------------------------------------------------- + */ + + /*------------------------------------------------------------------------- + * H5Z_FILTER_NONE + *------------------------------------------------------------------------- + */ + if (HDstrcmp(scomp,"NONE")==0) + { + filt->filtn=H5Z_FILTER_NONE; + filt->cd_nelmts = 0; + } + + /*------------------------------------------------------------------------- + * H5Z_FILTER_DEFLATE + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp,"GZIP")==0) + { + filt->filtn=H5Z_FILTER_DEFLATE; + filt->cd_nelmts = 1; + if (no_param) + { /*no more parameters, GZIP must have parameter */ + if (obj_list) HDfree(obj_list); + error_msg("missing compression parameter in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + + /*------------------------------------------------------------------------- + * H5Z_FILTER_SZIP + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp,"SZIP")==0) + { + filt->filtn=H5Z_FILTER_SZIP; + filt->cd_nelmts = 2; + if (no_param) + { /*no more parameters, SZIP must have parameter */ + if (obj_list) HDfree(obj_list); + error_msg("missing compression parameter in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + + /*------------------------------------------------------------------------- + * H5Z_FILTER_SHUFFLE + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp,"SHUF")==0) + { + filt->filtn=H5Z_FILTER_SHUFFLE; + filt->cd_nelmts = 0; + if (m>0) + { /*shuffle does not have parameter */ + if (obj_list) HDfree(obj_list); + error_msg("extra parameter in SHUF <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + /*------------------------------------------------------------------------- + * H5Z_FILTER_FLETCHER32 + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp,"FLET")==0) + { + filt->filtn=H5Z_FILTER_FLETCHER32; + filt->cd_nelmts = 0; + if (m>0) + { /*shuffle does not have parameter */ + if (obj_list) HDfree(obj_list); + error_msg("extra parameter in FLET <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + /*------------------------------------------------------------------------- + * H5Z_FILTER_NBIT + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp,"NBIT")==0) + { + filt->filtn=H5Z_FILTER_NBIT; + filt->cd_nelmts = 0; + if (m>0) + { /*nbit does not have parameter */ + if (obj_list) HDfree(obj_list); + error_msg("extra parameter in NBIT <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + /*------------------------------------------------------------------------- + * H5Z_FILTER_SCALEOFFSET + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp,"SOFF")==0) + { + filt->filtn=H5Z_FILTER_SCALEOFFSET; + filt->cd_nelmts = 2; + if (no_param) + { /*no more parameters, SOFF must have parameter */ + if (obj_list) HDfree(obj_list); + error_msg("missing compression parameter in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + /*------------------------------------------------------------------------- + * User Defined Filter + *------------------------------------------------------------------------- + */ + else if (HDstrcmp(scomp,"UD")==0) + { + if (filt->cd_nelmts != j) + { /* parameters does not match count */ + if (obj_list) HDfree(obj_list); + error_msg("incorrect number of compression parameters in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + else { + if (obj_list) HDfree(obj_list); + error_msg("invalid filter type in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + } + } /*i*/ + + /*------------------------------------------------------------------------- + * check valid parameters + *------------------------------------------------------------------------- + */ + + switch (filt->filtn) + { + + /*------------------------------------------------------------------------- + * H5Z_FILTER_DEFLATE + *------------------------------------------------------------------------- + */ + + case H5Z_FILTER_DEFLATE: + if (filt->cd_values[0]>9 ) + { + if (obj_list) HDfree(obj_list); + error_msg("invalid compression parameter in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + break; + + /*------------------------------------------------------------------------- + * H5Z_FILTER_SZIP + *------------------------------------------------------------------------- + */ + + case H5Z_FILTER_SZIP: + pixels_per_block=filt->cd_values[0]; + if ((pixels_per_block%2)==1) + { + if (obj_list) HDfree(obj_list); + error_msg("pixels_per_block is not even in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + if (pixels_per_block>H5_SZIP_MAX_PIXELS_PER_BLOCK) + { + if (obj_list) HDfree(obj_list); + error_msg("pixels_per_block is too large in <%s>\n",str); + HDexit(EXIT_FAILURE); + } + if ( (HDstrcmp(smask,"NN")!=0) && (HDstrcmp(smask,"EC")!=0) ) + { + if (obj_list) HDfree(obj_list); + error_msg("szip mask must be 'NN' or 'EC' \n"); + HDexit(EXIT_FAILURE); + } + break; + default: + break; + + + }; + + return obj_list; } @@ -540,9 +540,9 @@ obj_list_t* parse_filter(const char *str, *------------------------------------------------------------------------- */ obj_list_t* parse_layout(const char *str, - int *n_objs, - pack_info_t *pack, /* info about layout needed */ - pack_opt_t *options) + int *n_objs, + pack_info_t *pack, /* info about layout needed */ + pack_opt_t *options) { obj_list_t* obj_list=NULL; unsigned i; @@ -636,10 +636,10 @@ obj_list_t* parse_layout(const char *str, if ( pack->layout==H5D_CHUNKED ) { - /*------------------------------------------------------------------------- - * get chunk info - *------------------------------------------------------------------------- - */ + /*------------------------------------------------------------------------- + * get chunk info + *------------------------------------------------------------------------- + */ k=0; if (j>(int)len) @@ -656,11 +656,11 @@ obj_list_t* parse_layout(const char *str, k++; /*increment sdim index */ if (!isdigit(c) && c!='x' - && c!='N' && c!='O' && c!='N' && c!='E' - ){ + && c!='N' && c!='O' && c!='N' && c!='E' + ){ if (obj_list) HDfree(obj_list); error_msg("in parse layout, <%s> Not a valid character in <%s>\n", - sdim,str); + sdim,str); HDexit(EXIT_FAILURE); } @@ -673,7 +673,7 @@ obj_list_t* parse_layout(const char *str, if (pack->chunk.chunk_lengths[c_index]==0) { if (obj_list) HDfree(obj_list); error_msg("in parse layout, <%s> conversion to number in <%s>\n", - sdim,str); + sdim,str); HDexit(EXIT_FAILURE); } c_index++; @@ -691,7 +691,7 @@ obj_list_t* parse_layout(const char *str, if (pack->chunk.chunk_lengths[c_index]==0){ if (obj_list) HDfree(obj_list); error_msg("in parse layout, <%s> conversion to number in <%s>\n", - sdim,str); + sdim,str); HDexit(EXIT_FAILURE); } pack->chunk.rank=c_index+1; diff --git a/tools/h5repack/h5repack_verify.c b/tools/h5repack/h5repack_verify.c index 42799f9..52423f1 100644 --- a/tools/h5repack/h5repack_verify.c +++ b/tools/h5repack/h5repack_verify.c @@ -51,17 +51,17 @@ static int verify_filters(hid_t pid, hid_t tid, int nfilters, filter_info_t *fil int h5repack_verify(const char *in_fname, const char *out_fname, pack_opt_t *options) { - hid_t fidin; /* file ID for input file*/ - hid_t fidout; /* file ID for output file*/ - hid_t did; /* dataset ID */ - hid_t pid; /* dataset creation property list ID */ - hid_t sid; /* space ID */ - hid_t tid; /* type ID */ + hid_t fidin = -1; /* file ID for input file*/ + hid_t fidout = -1; /* file ID for output file*/ + hid_t did = -1; /* dataset ID */ + hid_t pid = -1; /* dataset creation property list ID */ + hid_t sid = -1; /* space ID */ + hid_t tid = -1; /* type ID */ unsigned int i; trav_table_t *travt = NULL; int ok = 1; - hid_t fcpl_in; /* file creation property for input file */ - hid_t fcpl_out; /* file creation property for output file */ + hid_t fcpl_in = -1; /* file creation property for input file */ + hid_t fcpl_out = -1; /* file creation property for output file */ H5F_file_space_type_t in_strat, out_strat; /* file space handling strategy for in/output file */ hsize_t in_thresh, out_thresh; /* free space section threshold for in/output file */ diff --git a/tools/h5repack/h5repacktst.c b/tools/h5repack/h5repacktst.c index 46d895c..3959300 100644 --- a/tools/h5repack/h5repacktst.c +++ b/tools/h5repack/h5repacktst.c @@ -1547,10 +1547,8 @@ int main (void) { hid_t fapl; - /* setup */ - h5_reset(); fapl = h5_fileaccess(); - h5_cleanup(H5REPACK_FILENAMES, fapl); 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\ - fi; \ - done - -# Tell versions [3.59,3.63) of GNU make to not export all variables. -# Otherwise a system limit (for SysV at least) may be exceeded. -.NOEXPORT: diff --git a/tools/lib/h5diff.c b/tools/lib/h5diff.c index badaf3c..46dcf6f 100644 --- a/tools/lib/h5diff.c +++ b/tools/lib/h5diff.c @@ -594,8 +594,8 @@ hsize_t h5diff(const char *fname1, trav_info_t *info1_grp = NULL; trav_info_t *info2_grp = NULL; /* local pointer */ - trav_info_t *info1_lp; - trav_info_t *info2_lp; + trav_info_t *info1_lp = NULL; + trav_info_t *info2_lp = NULL; /* link info from specified object */ H5L_info_t src_linfo1; H5L_info_t src_linfo2; diff --git a/tools/lib/h5diff_array.c b/tools/lib/h5diff_array.c index 71ada53..d592528 100644 --- a/tools/lib/h5diff_array.c +++ b/tools/lib/h5diff_array.c @@ -102,29 +102,29 @@ static hbool_t not_comparable; -#define PER(A,B) { \ - per = -1; \ - not_comparable = FALSE; \ - both_zero = FALSE; \ - if(0 == (A) && 0 == (B)) \ - both_zero = TRUE; \ - if(0 != (A)) \ - per = (double)ABS((double)((B) - (A)) / (double)(A)); \ - else \ - not_comparable = TRUE; \ +#define PER(A,B) { \ + per = -1; \ + not_comparable = FALSE; \ + both_zero = FALSE; \ + if(H5_DBL_ABS_EQUAL(0,A) && H5_DBL_ABS_EQUAL(0,B)) \ + both_zero = TRUE; \ + if(!H5_DBL_ABS_EQUAL(0,A)) \ + per = (double)ABS((double)((B) - (A)) / (double)(A)); \ + else \ + not_comparable = TRUE; \ } -#define PER_UNSIGN(TYPE,A,B) { \ - per = -1; \ - not_comparable = FALSE; \ - both_zero = FALSE; \ - if((A) == 0 && (B) == 0) \ - both_zero = TRUE; \ - if((A) != 0) \ - per = ABS((double)((TYPE)((B) - (A))) / (double)(A)) ; \ - else \ - not_comparable = TRUE; \ +#define PER_UNSIGN(TYPE,A,B) { \ + per = -1; \ + not_comparable = FALSE; \ + both_zero = FALSE; \ + if(H5_DBL_ABS_EQUAL(0,A) && H5_DBL_ABS_EQUAL(0,B)) \ + both_zero = TRUE; \ + if(!H5_DBL_ABS_EQUAL(0,A)) \ + per = ABS((double)((TYPE)((B) - (A))) / (double)(A)) ; \ + else \ + not_comparable = TRUE; \ } diff --git a/tools/lib/h5diff_dset.c b/tools/lib/h5diff_dset.c index d7c5639..b8dd0e8 100644 --- a/tools/lib/h5diff_dset.c +++ b/tools/lib/h5diff_dset.c @@ -687,31 +687,30 @@ int diff_can_type( hid_t f_tid1, /* file data type */ HDassert(tclass1==tclass2); switch (tclass1) { - case H5T_INTEGER: - case H5T_FLOAT: - case H5T_COMPOUND: - case H5T_STRING: - case H5T_ARRAY: - case H5T_BITFIELD: - case H5T_OPAQUE: - case H5T_ENUM: - case H5T_VLEN: - case H5T_REFERENCE: - - break; - - default: /*H5T_TIME */ - + case H5T_TIME: + if ( (options->m_verbose||options->m_list_not_cmp) && obj1_name && obj2_name) { + parallel_print("Not comparable: <%s> and <%s> are of class %s\n", + obj1_name,obj2_name,get_class(tclass2) ); + } /* end if */ + can_compare = 0; + options->not_cmp = 1; + return can_compare; - if ( (options->m_verbose||options->m_list_not_cmp) && obj1_name && obj2_name) - { - parallel_print("Not comparable: <%s> and <%s> are of class %s\n", - obj1_name,obj2_name,get_class(tclass2) ); - } - can_compare = 0; - options->not_cmp = 1; - return can_compare; - } + case H5T_INTEGER: + case H5T_FLOAT: + case H5T_COMPOUND: + case H5T_STRING: + case H5T_ARRAY: + case H5T_BITFIELD: + case H5T_OPAQUE: + case H5T_ENUM: + case H5T_VLEN: + case H5T_REFERENCE: + case H5T_NO_CLASS: + case H5T_NCLASSES: + default: + break; + } /* end switch */ /*------------------------------------------------------------------------- * check for equal file datatype; warning only diff --git a/tools/lib/h5diff_util.c b/tools/lib/h5diff_util.c index aefd641..14fbcaa 100644 --- a/tools/lib/h5diff_util.c +++ b/tools/lib/h5diff_util.c @@ -78,8 +78,6 @@ void print_type(hid_t type) { switch (H5Tget_class(type)) { - default: - return; case H5T_INTEGER: if (H5Tequal(type, H5T_STD_I8BE)) { parallel_print("H5T_STD_I8BE"); @@ -160,7 +158,21 @@ void print_type(hid_t type) } break; - }/*switch*/ + case H5T_TIME: + case H5T_STRING: + case H5T_BITFIELD: + case H5T_OPAQUE: + case H5T_COMPOUND: + case H5T_REFERENCE: + case H5T_ENUM: + case H5T_VLEN: + case H5T_ARRAY: + case H5T_NO_CLASS: + case H5T_NCLASSES: + default: + return; + + } /* end switch */ } /*------------------------------------------------------------------------- @@ -219,6 +231,7 @@ get_type(h5trav_type_t type) return("H5G_LINK"); case H5TRAV_TYPE_UDLINK: return("H5G_UDLINK"); + case H5TRAV_TYPE_UNKNOWN: default: return("unknown type"); } @@ -242,13 +255,18 @@ get_sign(H5T_sign_t sign) { switch (sign) { - default: - return("H5T_SGN_ERROR"); - case H5T_SGN_NONE: - return("H5T_SGN_NONE"); - case H5T_SGN_2: - return("H5T_SGN_2"); - } + case H5T_SGN_NONE: + return "H5T_SGN_NONE"; + case H5T_SGN_2: + return "H5T_SGN_2"; + case H5T_SGN_ERROR: + return "H5T_SGN_ERROR"; + case H5T_NSGN: + return "H5T_NSGN"; + default: + HDassert(0); + return "unknown sign value"; + } /* end switch */ } @@ -268,8 +286,6 @@ get_class(H5T_class_t tclass) { switch (tclass) { - default: - return("Invalid class"); case H5T_TIME: return("H5T_TIME"); case H5T_INTEGER: @@ -292,8 +308,13 @@ get_class(H5T_class_t tclass) return("H5T_VLEN"); case H5T_ARRAY: return("H5T_ARRAY"); - } -} + case H5T_NO_CLASS: + case H5T_NCLASSES: + default: + HDassert(0); + return("Invalid class"); + } /* end switch */ +} /* end get_class() */ /*------------------------------------------------------------------------- * Function: print_found diff --git a/tools/lib/h5tools.c b/tools/lib/h5tools.c index c820aff..19d71bb 100644 --- a/tools/lib/h5tools.c +++ b/tools/lib/h5tools.c @@ -1498,14 +1498,24 @@ render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t } } break; - default: + + case H5T_TIME: + case H5T_BITFIELD: + case H5T_OPAQUE: for (block_index = 0; block_index < block_nelmts; block_index++) { mem = ((unsigned char*)_mem) + block_index * size; if (size != HDfwrite(mem, sizeof(char), size, stream)) H5E_THROW(FAIL, H5E_tools_min_id_g, "fwrite failed"); - } + } /* end for */ break; - } + + case H5T_NO_CLASS: + case H5T_NCLASSES: + default: + /* Badness */ + H5E_THROW(FAIL, H5E_tools_min_id_g, "bad type class"); + break; + } /* end switch */ CATCH return ret_value; @@ -1631,8 +1641,8 @@ render_bin_output_region_blocks(hid_t region_space, hid_t region_id, hsize_t alloc_size; hsize_t *ptdata; int ndims; - hid_t dtype; - hid_t type_id; + hid_t dtype = -1; + hid_t type_id = -1; if((snblocks = H5Sget_select_hyper_nblocks(region_space)) <= 0) H5E_THROW(FALSE, H5E_tools_min_id_g, "H5Sget_select_hyper_nblocks failed"); @@ -1662,10 +1672,10 @@ render_bin_output_region_blocks(hid_t region_space, hid_t region_id, done: HDfree(ptdata); - if(H5Tclose(type_id) < 0) + if(type_id > 0 && H5Tclose(type_id) < 0) HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); - if(H5Tclose(dtype) < 0) + if(dtype > 0 && H5Tclose(dtype) < 0) HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); H5_LEAVE(TRUE) @@ -1755,8 +1765,8 @@ render_bin_output_region_points(hid_t region_space, hid_t region_id, HERR_INIT(hbool_t, TRUE) hssize_t npoints; int ndims; - hid_t dtype; - hid_t type_id; + hid_t dtype = -1; + hid_t type_id = -1; if((npoints = H5Sget_select_elem_npoints(region_space)) <= 0) H5E_THROW(FALSE, H5E_tools_min_id_g, "H5Sget_select_elem_npoints failed"); @@ -1775,10 +1785,10 @@ render_bin_output_region_points(hid_t region_space, hid_t region_id, stream, container, ndims, type_id, npoints); done: - if(H5Tclose(type_id) < 0) + if(type_id > 0 && H5Tclose(type_id) < 0) HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); - if(H5Tclose(dtype) < 0) + if(dtype > 0 && H5Tclose(dtype) < 0) HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); H5_LEAVE(ret_value) diff --git a/tools/lib/h5tools.h b/tools/lib/h5tools.h index d6c3720..ff7cf12 100644 --- a/tools/lib/h5tools.h +++ b/tools/lib/h5tools.h @@ -81,7 +81,7 @@ #define FLETCHER32 "CHECKSUM FLETCHER32" #define SZIP "COMPRESSION SZIP" #define NBIT "COMPRESSION NBIT" -#define SCALEOFFSET "COMPRESSION SCALEOFFSET" +#define SCALEOFFSET "COMPRESSION SCALEOFFSET" #define SCALEOFFSET_MINBIT "MIN BITS" #define STORAGE_LAYOUT "STORAGE_LAYOUT" #define CONTIGUOUS "CONTIGUOUS" @@ -574,8 +574,12 @@ H5TOOLS_DLL void h5tools_region_simple_prefix(FILE *stream, const h5tool_form h5tools_context_t *ctx, hsize_t elmtno, hsize_t *ptdata, int secnum); H5TOOLS_DLL int render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t nelmts); +H5TOOLS_DLL int render_bin_output_region_data_blocks(hid_t region_id, FILE *stream, + hid_t container, int ndims, hid_t type_id, hssize_t nblocks, hsize_t *ptdata); H5TOOLS_DLL hbool_t render_bin_output_region_blocks(hid_t region_space, hid_t region_id, FILE *stream, hid_t container); +H5TOOLS_DLL int render_bin_output_region_data_points(hid_t region_space, hid_t region_id, + FILE* stream, hid_t container, int ndims, hid_t type_id, hssize_t npoints); H5TOOLS_DLL hbool_t render_bin_output_region_points(hid_t region_space, hid_t region_id, FILE *stream, hid_t container); diff --git a/tools/lib/h5tools_dump.c b/tools/lib/h5tools_dump.c index 26cac47..1e6e9d6 100644 --- a/tools/lib/h5tools_dump.c +++ b/tools/lib/h5tools_dump.c @@ -368,7 +368,7 @@ h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t contai } ctx->need_prefix = TRUE; - + if(FALSE == dimension_break) elmt_counter = 0; } /* end for (i = 0; i < nelmts... */ @@ -803,14 +803,15 @@ h5tools_print_region_data_points(hid_t region_space, hid_t region_id, HDassert(cur_ctx); HDassert(buffer); HDassert(ptdata); + HDassert(ndims > 0); HDmemset(&ctx, 0, sizeof(ctx)); /* Allocate space for the dimension array */ - if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) == NULL) + if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims)) == NULL) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for dims"); dims1[0] = npoints; - + /* Create dataspace for reading buffer */ if((mem_space = H5Screate_simple(1, dims1, NULL)) < 0) HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Screate_simple failed"); @@ -926,8 +927,8 @@ h5tools_dump_region_data_points(hid_t region_space, hid_t region_id, hsize_t *ptdata; int ndims; hssize_t indx; - hid_t dtype; - hid_t type_id; + hid_t dtype = -1; + hid_t type_id = -1; HDassert(info); HDassert(ctx); @@ -1048,10 +1049,10 @@ h5tools_dump_region_data_points(hid_t region_space, hid_t region_id, done: HDfree(ptdata); - if(H5Tclose(type_id) < 0) + if(type_id > 0 && H5Tclose(type_id) < 0) HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); - if(H5Tclose(dtype) < 0) + if(dtype > 0 && H5Tclose(dtype) < 0) HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); ctx->need_prefix = TRUE; @@ -1457,7 +1458,7 @@ h5tools_dump_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_co if((f_space = H5Dget_space(dset)) < 0) H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Dget_space failed"); - + if((sndims = H5Sget_simple_extent_ndims(f_space)) < 0) H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed"); ctx->ndims = (unsigned)sndims; @@ -1743,7 +1744,7 @@ CATCH *------------------------------------------------------------------------- */ int -h5tools_dump_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, +h5tools_dump_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t dset, struct subset_t *sset) { hid_t f_space = -1; @@ -1819,7 +1820,7 @@ done: *------------------------------------------------------------------------- */ int -h5tools_dump_mem(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, +h5tools_dump_mem(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t obj_id, hid_t type, hid_t space, void *mem) { HERR_INIT(int, SUCCEED) @@ -1898,18 +1899,18 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ } else h5tools_str_append(buffer, "\"%s\"", obj->objname); - } + } else { error_msg("unknown committed type.\n"); h5tools_setstatus(EXIT_FAILURE); } return ret_value; - } - + } + if (info->line_ncols > 0) ncols = info->line_ncols; - + switch (type_class) { case H5T_INTEGER: if (H5Tequal(type, H5T_STD_I8BE) == TRUE) { @@ -2231,7 +2232,7 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed"); } /* end if */ else if(order == H5T_ORDER_BE) { - if(H5Tset_order(str_type, H5T_ORDER_BE) < 0) + if(H5Tset_order(str_type, H5T_ORDER_BE) < 0) HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed"); } /* end if */ @@ -2262,7 +2263,7 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed"); } /* end if */ else if(order == H5T_ORDER_BE) { - if(H5Tset_order(str_type, H5T_ORDER_BE) < 0) + if(H5Tset_order(str_type, H5T_ORDER_BE) < 0) HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tset_order failed"); } /* end if */ @@ -2336,9 +2337,9 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ h5tools_str_reset(buffer); h5tools_str_append(buffer, "OPAQUE_TAG \"%s\";", ttag); h5tools_render_element(stream, info, ctx, buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - + H5free_memory(ttag); - } + } ctx->indent_level--; ctx->need_prefix = TRUE; @@ -2352,7 +2353,7 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ if((snmembers = H5Tget_nmembers(type)) < 0) H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers failed"); nmembers = (unsigned)snmembers; - + h5tools_str_append(buffer, "H5T_COMPOUND %s", h5tools_dump_header_format->structblockbegin); h5tools_render_element(stream, info, ctx, buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -2407,7 +2408,7 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ h5tools_str_reset(buffer); h5tools_print_datatype(stream, buffer, info, ctx, super, TRUE); - + if(H5Tclose(super) < 0) HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed"); @@ -2476,6 +2477,8 @@ h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_ break; + case H5T_NO_CLASS: + case H5T_NCLASSES: default: h5tools_str_append(buffer, "unknown datatype"); break; @@ -2595,7 +2598,7 @@ h5tools_print_enum(FILE *stream, h5tools_str_t *buffer, const h5tool_format_t *i if (info->line_ncols > 0) ncols = info->line_ncols; - + if((snmembs = H5Tget_nmembers(type)) < 0) H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers failed"); nmembs = (unsigned)snmembs; @@ -2735,7 +2738,7 @@ h5tools_dump_datatype(FILE *stream, const h5tool_format_t *info, ncols = info->line_ncols; ctx->need_prefix = TRUE; - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->datatypebegin, @@ -2757,7 +2760,7 @@ h5tools_dump_datatype(FILE *stream, const h5tool_format_t *info, /*------------------------------------------------------------------------- * Function: dump_dataspace * - * Purpose: Dump the dataspace. + * Purpose: Dump the dataspace. * * Return: void * @@ -2783,7 +2786,7 @@ h5tools_dump_dataspace(FILE *stream, const h5tool_format_t *info, ncols = info->line_ncols; ctx->need_prefix = TRUE; - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s ", h5tools_dump_header_format->dataspacebegin); @@ -2833,7 +2836,7 @@ h5tools_dump_oid(FILE *stream, const h5tool_format_t *info, ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s %d %s", OBJID, BEGIN, oid, END); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -2903,7 +2906,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, off_t offset; /* offset of external file */ char f_name[256]; /* filter name */ char name[256]; /* external or virtual file name */ - char dsetname[256]; /* virtual datset name */ hsize_t chsize[64]; /* chunk size in elements */ hsize_t size; /* size of external file */ hsize_t storage_size; @@ -2925,7 +2927,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, */ ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s", STORAGE_LAYOUT, BEGIN); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -3080,6 +3082,8 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, } } break; + case H5D_LAYOUT_ERROR: + case H5D_NLAYOUTS: default: h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", "Unknown layout"); @@ -3102,7 +3106,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s", FILTERS, BEGIN); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -3114,13 +3118,13 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, cd_nelmts = NELMTS(cd_values); filtn = H5Pget_filter2(dcpl_id, (unsigned)i, &filt_flags, &cd_nelmts, cd_values, sizeof(f_name), f_name, NULL); - - if (filtn < 0) - continue; /* nothing to print for invalid filter */ + + if(filtn < 0) + continue; /* nothing to print for invalid filter */ ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); switch(filtn) { case H5Z_FILTER_DEFLATE: @@ -3184,7 +3188,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, if(szip_options_mask & H5_SZIP_RAW_OPTION_MASK) { ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "HEADER %s", "RAW"); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -3208,12 +3212,6 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); break; default: - /* filters do not have to be available for showing registered filter info. - see HDFFV-8346 for details. --xcao@hdfgroup.org - if(H5Zfilter_avail(filtn)) - h5tools_str_append(&buffer, "%s %s", "USER_REGISTERED_FILTER", BEGIN); - else - */ h5tools_str_append(&buffer, "%s %s", "USER_DEFINED_FILTER", BEGIN); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -3221,15 +3219,15 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "FILTER_ID %d", filtn); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - + if(f_name[0] != '\0') { ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "COMMENT %s", f_name); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -3237,7 +3235,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, if (cd_nelmts) { ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ","PARAMS", BEGIN); for (j=0; j<cd_nelmts; j++) @@ -3249,7 +3247,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s",END); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -3261,7 +3259,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "NONE"); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -3270,7 +3268,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s",END); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -3281,7 +3279,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, */ ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s", FILLVALUE, BEGIN); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -3290,10 +3288,10 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "FILL_TIME "); - + H5Pget_fill_time(dcpl_id, &ft); switch(ft) { case H5D_FILL_TIME_ALLOC: @@ -3305,6 +3303,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, case H5D_FILL_TIME_IFSET: h5tools_str_append(&buffer, "%s", "H5D_FILL_TIME_IFSET"); break; + case H5D_FILL_TIME_ERROR: default: HDassert(0); break; @@ -3313,7 +3312,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s ", "VALUE "); H5Pfill_value_defined(dcpl_id, &fvstatus); @@ -3329,7 +3328,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -3340,7 +3339,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, */ ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "ALLOCATION_TIME %s", BEGIN); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -3349,7 +3348,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); H5Pget_alloc_time(dcpl_id, &at); switch(at) { @@ -3362,6 +3361,8 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, case H5D_ALLOC_TIME_LATE: h5tools_str_append(&buffer, "%s", "H5D_ALLOC_TIME_LATE"); break; + case H5D_ALLOC_TIME_ERROR: + case H5D_ALLOC_TIME_DEFAULT: default: HDassert(0); break; @@ -3372,7 +3373,7 @@ h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info, ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s", END); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -3422,7 +3423,7 @@ h5tools_dump_comment(FILE *stream, const h5tool_format_t *info, comment[cmt_bufsize] = '\0'; /* necessary because null char is not returned */ ctx->need_prefix = TRUE; - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "COMMENT \"%s\"", comment); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); @@ -3437,7 +3438,7 @@ h5tools_dump_comment(FILE *stream, const h5tool_format_t *info, /*------------------------------------------------------------------------- * Function: dump_attribute * - * Purpose: Dump the attribute. + * Purpose: Dump the attribute. * * Return: void * @@ -3446,7 +3447,7 @@ h5tools_dump_comment(FILE *stream, const h5tool_format_t *info, */ void h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, const char *attr_name, hid_t attr_id, + h5tools_context_t *ctx, const char *attr_name, hid_t attr_id, int display_index, int display_char) { h5tools_str_t buffer; /* string into which to render */ @@ -3465,7 +3466,7 @@ h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, curr_pos, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s \"%s\" %s", h5tools_dump_header_format->attributebegin, attr_name, @@ -3474,7 +3475,7 @@ h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, if(attr_id < 0) { error_msg("unable to open attribute \"%s\"\n", attr_name); - } + } else { hid_t type, space; @@ -3501,7 +3502,7 @@ h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info, ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); - + h5tools_str_reset(&buffer); if (HDstrlen(h5tools_dump_header_format->attributeblockend)) { @@ -3557,36 +3558,36 @@ void h5tools_print_packed_bits(h5tools_str_t *buffer, hid_t type) { int packed_bits_size = 0; - + hid_t n_type = h5tools_get_native_type(type); if(H5Tget_class(n_type)==H5T_INTEGER) { if(H5Tequal(n_type, H5T_NATIVE_SCHAR) == TRUE) { packed_bits_size = 8 * sizeof(char); - } + } else if(H5Tequal(n_type, H5T_NATIVE_UCHAR) == TRUE) { packed_bits_size = 8 * sizeof(unsigned char); - } + } else if(H5Tequal(n_type, H5T_NATIVE_SHORT) == TRUE) { packed_bits_size = 8 * sizeof(short); - } + } else if(H5Tequal(n_type, H5T_NATIVE_USHORT) == TRUE) { packed_bits_size = 8 * sizeof(unsigned short); - } + } else if(H5Tequal(n_type, H5T_NATIVE_INT) == TRUE) { packed_bits_size = 8 * sizeof(int); - } + } else if(H5Tequal(n_type, H5T_NATIVE_UINT) == TRUE) { packed_bits_size = 8 * sizeof(unsigned int); - } + } else if(H5Tequal(n_type, H5T_NATIVE_LONG) == TRUE) { packed_bits_size = 8 * sizeof(long); - } + } else if(H5Tequal(n_type, H5T_NATIVE_ULONG) == TRUE) { packed_bits_size = 8 * sizeof(unsigned long); - } + } else if(H5Tequal(n_type, H5T_NATIVE_LLONG) == TRUE) { packed_bits_size = 8 * sizeof(long long); - } + } else if(H5Tequal(n_type, H5T_NATIVE_ULLONG) == TRUE) { packed_bits_size = 8 * sizeof(unsigned long long); } @@ -3627,25 +3628,25 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, HDmemset(&buffer, 0, sizeof(h5tools_str_t)); if (info->line_ncols > 0) ncols = info->line_ncols; - + ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->subsettingbegin, h5tools_dump_header_format->subsettingblockbegin); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); ctx->indent_level++; - + ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); - + h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->startbegin, h5tools_dump_header_format->startblockbegin); h5tools_print_dims(&buffer, sset->start.data, dims); h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->startend, h5tools_dump_header_format->startblockend); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - + ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); @@ -3654,7 +3655,7 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tools_print_dims(&buffer, sset->stride.data, dims); h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->strideend, h5tools_dump_header_format->strideblockend); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - + ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); @@ -3668,7 +3669,7 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->countend, h5tools_dump_header_format->countblockend); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - + ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, info, ctx, (hsize_t)0, 0); @@ -3682,7 +3683,7 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->blockend, h5tools_dump_header_format->blockblockend); h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, (size_t)ncols, (hsize_t)0, (hsize_t)0); - + ctx->indent_level--; h5tools_str_close(&buffer); @@ -3699,7 +3700,7 @@ h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info, */ void h5tools_dump_data(FILE *stream, const h5tool_format_t *info, - h5tools_context_t *ctx, hid_t obj_id, int obj_data, struct subset_t *sset, + h5tools_context_t *ctx, hid_t obj_id, int obj_data, struct subset_t *sset, int display_index, int display_char) { H5S_class_t space_type; @@ -3762,10 +3763,10 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, h5tools_dump_subsetting_header(stream, &outputformat, ctx, sset, H5Sget_simple_extent_ndims(f_space)); H5Sclose(f_space); - + ctx->indent_level++; } - + ctx->need_prefix = TRUE; h5tools_str_reset(&buffer); h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->databegin, h5tools_dump_header_format->datablockbegin); @@ -3791,7 +3792,7 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, datactx.indent_level++; datactx.need_prefix = TRUE; h5tools_simple_prefix(stream, info, &datactx, (hsize_t)0, 0); - + string_dataformat = *info; string_dataformat.idx_fmt = "\""; string_dataformat.line_multi_new = 1; @@ -3859,7 +3860,7 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, datactx.indent_level++; datactx.need_prefix = TRUE; h5tools_simple_prefix(stream, info, &datactx, (hsize_t)0, 0); - + string_dataformat = *info; string_dataformat.idx_fmt = "\""; string_dataformat.line_multi_new = 1; @@ -3886,7 +3887,7 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, H5Dvlen_reclaim(p_type, space, H5P_DEFAULT, buf); HDfree(buf); - } + } else status = SUCCEED; @@ -3916,10 +3917,10 @@ h5tools_dump_data(FILE *stream, const h5tool_format_t *info, if (sset && obj_data) { ctx->indent_level--; - + ctx->need_prefix = TRUE; h5tools_simple_prefix(stream, &outputformat, ctx, (hsize_t)0, 0); - + h5tools_str_reset(&buffer); if(HDstrlen(h5tools_dump_header_format->subsettingblockend)) { h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->subsettingblockend); diff --git a/tools/lib/h5tools_error.h b/tools/lib/h5tools_error.h index ae549fd..749157e 100644 --- a/tools/lib/h5tools_error.h +++ b/tools/lib/h5tools_error.h @@ -98,7 +98,7 @@ H5TOOLS_DLLVAR hid_t H5E_tools_min_id_g; * to the `catch_except' label, if we're not already past it. */ #define H5E_THROW(fail_value, min_id, str) { \ - HERROR(H5E_tools_g, min_id, str); \ + H5Epush2(H5tools_ERR_STACK_g, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, H5E_tools_g, min_id, str); \ H5_LEAVE(fail_value) \ } diff --git a/tools/lib/h5tools_ref.c b/tools/lib/h5tools_ref.c index 0bb7d77..60666f1 100644 --- a/tools/lib/h5tools_ref.c +++ b/tools/lib/h5tools_ref.c @@ -218,7 +218,7 @@ ref_path_table_put(const char *path, haddr_t objno) HDassert(ref_path_table); HDassert(path); - if((new_node = HDmalloc(sizeof(ref_path_node_t))) == NULL) + if((new_node = (ref_path_node_t *)HDmalloc(sizeof(ref_path_node_t))) == NULL) return(-1); new_node->objno = objno; @@ -300,7 +300,7 @@ lookup_ref_path(haddr_t ref) if(ref_path_table == NULL) init_ref_path_table(); - node = H5SL_search(ref_path_table, &ref); + node = (ref_path_node_t *)H5SL_search(ref_path_table, &ref); return(node ? node->path : NULL); } diff --git a/tools/lib/h5tools_str.c b/tools/lib/h5tools_str.c index b61ed34..9d151d0 100644 --- a/tools/lib/h5tools_str.c +++ b/tools/lib/h5tools_str.c @@ -454,8 +454,7 @@ h5tools_str_dump_region_blocks(h5tools_str_t *str, hid_t region, for (i = 0; i < nblocks; i++) { int j; - h5tools_str_append(str, info->dset_blockformat_pre, i ? "," OPTIONAL_LINE_BREAK " " : "", - (unsigned long)i); + h5tools_str_append(str, info->dset_blockformat_pre, i ? "," OPTIONAL_LINE_BREAK " " : "", (unsigned long)i); /* Start coordinates and opposite corner */ for (j = 0; j < ndims; j++) @@ -1058,6 +1057,8 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai h5tools_str_append(str, H5_TOOLS_DATATYPE); break; + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: default: h5tools_str_append(str, "%u-", (unsigned) oi.type); break; @@ -1187,7 +1188,9 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai } break; - default: + case H5T_TIME: + case H5T_BITFIELD: + case H5T_OPAQUE: { /* All other types get printed as hexadecimal */ size_t i; @@ -1200,6 +1203,12 @@ h5tools_str_sprint(h5tools_str_t *str, const h5tool_format_t *info, hid_t contai } } break; + + case H5T_NO_CLASS: + case H5T_NCLASSES: + default: + h5tools_str_append(str, "invalid datatype"); + break; } /* end switch */ } return h5tools_str_fmt(str, start, OPT(info->elmt_fmt, "%s")); @@ -1388,17 +1397,16 @@ h5tools_str_replace ( const char *string, const char *substr, const char *replac char *head = NULL; if ( substr == NULL || replacement == NULL ) - return HDstrdup (string); - + return HDstrdup (string); newstr = HDstrdup (string); head = newstr; while ( (tok = HDstrstr ( head, substr ))){ oldstr = newstr; - newstr = HDmalloc ( HDstrlen ( oldstr ) - HDstrlen ( substr ) + HDstrlen ( replacement ) + 1 ); + newstr = (char *)HDmalloc( HDstrlen( oldstr ) - HDstrlen( substr ) + HDstrlen( replacement ) + 1 ); if ( newstr == NULL ){ - HDfree (oldstr); - return NULL; + HDfree (oldstr); + return NULL; } HDmemcpy ( newstr, oldstr, tok - oldstr ); HDmemcpy ( newstr + (tok - oldstr), replacement, HDstrlen ( replacement ) ); diff --git a/tools/lib/h5tools_type.c b/tools/lib/h5tools_type.c index d68d3c5..8a56d29 100644 --- a/tools/lib/h5tools_type.c +++ b/tools/lib/h5tools_type.c @@ -13,6 +13,7 @@ * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ +#include "H5private.h" #include "h5tools.h" /*------------------------------------------------------------------------- @@ -75,54 +76,54 @@ h5tools_get_little_endian_type(hid_t tid) size = H5Tget_size(tid); sign = H5Tget_sign(tid); - switch( type_class ) - { - case H5T_INTEGER: - { - if ( size == 1 && sign == H5T_SGN_2) - p_type=H5Tcopy(H5T_STD_I8LE); - else if ( size == 2 && sign == H5T_SGN_2) - p_type=H5Tcopy(H5T_STD_I16LE); - else if ( size == 4 && sign == H5T_SGN_2) - p_type=H5Tcopy(H5T_STD_I32LE); - else if ( size == 8 && sign == H5T_SGN_2) - p_type=H5Tcopy(H5T_STD_I64LE); - else if ( size == 1 && sign == H5T_SGN_NONE) - p_type=H5Tcopy(H5T_STD_U8LE); - else if ( size == 2 && sign == H5T_SGN_NONE) - p_type=H5Tcopy(H5T_STD_U16LE); - else if ( size == 4 && sign == H5T_SGN_NONE) - p_type=H5Tcopy(H5T_STD_U32LE); - else if ( size == 8 && sign == H5T_SGN_NONE) - p_type=H5Tcopy(H5T_STD_U64LE); - } - break; - - case H5T_FLOAT: - if ( size == 4) - p_type=H5Tcopy(H5T_IEEE_F32LE); - else if ( size == 8) - p_type=H5Tcopy(H5T_IEEE_F64LE); - break; - - case H5T_TIME: - case H5T_BITFIELD: - case H5T_OPAQUE: - case H5T_STRING: - case H5T_COMPOUND: - case H5T_REFERENCE: - case H5T_ENUM: - case H5T_VLEN: - case H5T_ARRAY: - break; - - default: - break; - - } - - return(p_type); -} + switch(type_class) { + case H5T_INTEGER: + if ( size == 1 && sign == H5T_SGN_2) + p_type=H5Tcopy(H5T_STD_I8LE); + else if ( size == 2 && sign == H5T_SGN_2) + p_type=H5Tcopy(H5T_STD_I16LE); + else if ( size == 4 && sign == H5T_SGN_2) + p_type=H5Tcopy(H5T_STD_I32LE); + else if ( size == 8 && sign == H5T_SGN_2) + p_type=H5Tcopy(H5T_STD_I64LE); + else if ( size == 1 && sign == H5T_SGN_NONE) + p_type=H5Tcopy(H5T_STD_U8LE); + else if ( size == 2 && sign == H5T_SGN_NONE) + p_type=H5Tcopy(H5T_STD_U16LE); + else if ( size == 4 && sign == H5T_SGN_NONE) + p_type=H5Tcopy(H5T_STD_U32LE); + else if ( size == 8 && sign == H5T_SGN_NONE) + p_type=H5Tcopy(H5T_STD_U64LE); + break; + + case H5T_FLOAT: + if ( size == 4) + p_type=H5Tcopy(H5T_IEEE_F32LE); + else if ( size == 8) + p_type=H5Tcopy(H5T_IEEE_F64LE); + break; + + case H5T_TIME: + case H5T_BITFIELD: + case H5T_OPAQUE: + case H5T_STRING: + case H5T_COMPOUND: + case H5T_REFERENCE: + case H5T_ENUM: + case H5T_VLEN: + case H5T_ARRAY: + break; + + case H5T_NO_CLASS: + case H5T_NCLASSES: + default: + HDassert(0); + break; + + } /* end switch */ + + return p_type; +} /* end h5tools_get_little_endian_type() */ /*------------------------------------------------------------------------- @@ -152,53 +153,51 @@ h5tools_get_big_endian_type(hid_t tid) size = H5Tget_size(tid); sign = H5Tget_sign(tid); - switch( type_class ) - { - case H5T_INTEGER: - { - if ( size == 1 && sign == H5T_SGN_2) - p_type=H5Tcopy(H5T_STD_I8BE); - else if ( size == 2 && sign == H5T_SGN_2) - p_type=H5Tcopy(H5T_STD_I16BE); - else if ( size == 4 && sign == H5T_SGN_2) - p_type=H5Tcopy(H5T_STD_I32BE); - else if ( size == 8 && sign == H5T_SGN_2) - p_type=H5Tcopy(H5T_STD_I64BE); - else if ( size == 1 && sign == H5T_SGN_NONE) - p_type=H5Tcopy(H5T_STD_U8BE); - else if ( size == 2 && sign == H5T_SGN_NONE) - p_type=H5Tcopy(H5T_STD_U16BE); - else if ( size == 4 && sign == H5T_SGN_NONE) - p_type=H5Tcopy(H5T_STD_U32BE); - else if ( size == 8 && sign == H5T_SGN_NONE) - p_type=H5Tcopy(H5T_STD_U64BE); - } - break; - - case H5T_FLOAT: - if ( size == 4) - p_type=H5Tcopy(H5T_IEEE_F32BE); - else if ( size == 8) - p_type=H5Tcopy(H5T_IEEE_F64BE); - break; - - case H5T_TIME: - case H5T_BITFIELD: - case H5T_OPAQUE: - case H5T_STRING: - case H5T_COMPOUND: - case H5T_REFERENCE: - case H5T_ENUM: - case H5T_VLEN: - case H5T_ARRAY: - break; - - default: - break; - - } - - - return(p_type); -} + switch(type_class) { + case H5T_INTEGER: + if ( size == 1 && sign == H5T_SGN_2) + p_type=H5Tcopy(H5T_STD_I8BE); + else if ( size == 2 && sign == H5T_SGN_2) + p_type=H5Tcopy(H5T_STD_I16BE); + else if ( size == 4 && sign == H5T_SGN_2) + p_type=H5Tcopy(H5T_STD_I32BE); + else if ( size == 8 && sign == H5T_SGN_2) + p_type=H5Tcopy(H5T_STD_I64BE); + else if ( size == 1 && sign == H5T_SGN_NONE) + p_type=H5Tcopy(H5T_STD_U8BE); + else if ( size == 2 && sign == H5T_SGN_NONE) + p_type=H5Tcopy(H5T_STD_U16BE); + else if ( size == 4 && sign == H5T_SGN_NONE) + p_type=H5Tcopy(H5T_STD_U32BE); + else if ( size == 8 && sign == H5T_SGN_NONE) + p_type=H5Tcopy(H5T_STD_U64BE); + break; + + case H5T_FLOAT: + if ( size == 4) + p_type=H5Tcopy(H5T_IEEE_F32BE); + else if ( size == 8) + p_type=H5Tcopy(H5T_IEEE_F64BE); + break; + + case H5T_TIME: + case H5T_BITFIELD: + case H5T_OPAQUE: + case H5T_STRING: + case H5T_COMPOUND: + case H5T_REFERENCE: + case H5T_ENUM: + case H5T_VLEN: + case H5T_ARRAY: + break; + + case H5T_NO_CLASS: + case H5T_NCLASSES: + default: + HDassert(0); + break; + } /* end switch */ + + return p_type; +} /* end h5tools_get_big_endian_type() */ diff --git a/tools/lib/h5tools_utils.c b/tools/lib/h5tools_utils.c index fc8cf1d..a09a003 100644 --- a/tools/lib/h5tools_utils.c +++ b/tools/lib/h5tools_utils.c @@ -612,7 +612,10 @@ find_objs_cb(const char *name, const H5O_info_t *oinfo, const char *already_seen } /* end if */ break; + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: default: + HDassert(0); break; } /* end switch */ diff --git a/tools/lib/io_timer.c b/tools/lib/io_timer.c index b8d44de..b85133d 100644 --- a/tools/lib/io_timer.c +++ b/tools/lib/io_timer.c @@ -169,6 +169,10 @@ set_time(io_time_t *pt, timer_type t, int start_stop) pt->total_time[HDF5_FILE_READ_CLOSE] += pt->mpi_timer[t] - pt->mpi_timer[HDF5_FINE_READ_FIXED_DIMS]; } break; +#else + case MPI_CLOCK: + HDfprintf(stderr, "MPI clock set in serial library\n"); + return NULL; #endif /* H5_HAVE_PARALLEL */ case SYS_CLOCK: if (start_stop == TSTART) { @@ -197,11 +201,11 @@ set_time(io_time_t *pt, timer_type t, int start_stop) } break; + default: - HDfprintf(stderr, "Unknown time clock type (%d)\n", pt->type); - return (NULL); - break; - } + HDfprintf(stderr, "Unknown time clock type (%d)\n", pt->type); + return NULL; + } /* end switch */ #if 0 /* this does not belong here. 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\ - fi; \ - done - -# Tell versions [3.59,3.63) of GNU make to not export all variables. -# Otherwise a system limit (for SysV at least) may be exceeded. -.NOEXPORT: diff --git a/tools/misc/h5debug.c b/tools/misc/h5debug.c index be6d089..480450d 100644 --- a/tools/misc/h5debug.c +++ b/tools/misc/h5debug.c @@ -23,19 +23,19 @@ * *------------------------------------------------------------------------- */ -#define H5A_PACKAGE /*suppress error about including H5Apkg */ -#define H5B2_PACKAGE /*suppress error about including H5B2pkg */ -#define H5B2_TESTING /*suppress warning about H5B2 testing funcs*/ -#define H5D_PACKAGE /*suppress error about including H5Dpkg */ -#define H5EA_PACKAGE /*suppress error about including H5EApkg */ -#define H5EA_TESTING /*suppress warning about H5EA testing funcs*/ -#define H5FA_PACKAGE /*suppress error about including H5FApkg */ -#define H5FA_TESTING /*suppress warning about H5FA testing funcs*/ -#define H5F_PACKAGE /*suppress error about including H5Fpkg */ -#define H5G_PACKAGE /*suppress error about including H5Gpkg */ -#define H5HF_PACKAGE /*suppress error about including H5HFpkg */ -#define H5O_PACKAGE /*suppress error about including H5Opkg */ -#define H5SM_PACKAGE /*suppress error about including H5SMpkg */ +#define H5A_FRIEND /*suppress error about including H5Apkg */ +#define H5B2_FRIEND /*suppress error about including H5B2pkg */ +#define H5B2_TESTING /*suppress warning about H5B2 testing funcs*/ +#define H5D_FRIEND /*suppress error about including H5Dpkg */ +#define H5EA_FRIEND /*suppress error about including H5EApkg */ +#define H5EA_TESTING /*suppress warning about H5EA testing funcs*/ +#define H5FA_FRIEND /*suppress error about including H5FApkg */ +#define H5FA_TESTING /*suppress warning about H5FA testing funcs*/ +#define H5F_FRIEND /*suppress error about including H5Fpkg */ +#define H5G_FRIEND /*suppress error about including H5Gpkg */ +#define H5HF_FRIEND /*suppress error about including H5HFpkg */ +#define H5O_FRIEND /*suppress error about including H5Opkg */ +#define H5SM_FRIEND /*suppress error about including H5SMpkg */ #include "H5private.h" /* Generic Functions */ #include "H5Apkg.h" /* Attributes */ @@ -121,8 +121,9 @@ get_H5B2_class(const uint8_t *sig) cls = H5A_BT2_CORDER; break; + case H5B2_NUM_BTREE_ID: default: - HDfprintf(stderr, "Unknown B-tree subtype %u\n", (unsigned)(subtype)); + HDfprintf(stderr, "Unknown v2 B-tree subtype %u\n", (unsigned)(subtype)); HDexit(4); } /* end switch */ @@ -156,8 +157,9 @@ get_H5EA_class(const uint8_t *sig) cls = H5EA_CLS_TEST; break; + case H5EA_NUM_CLS_ID: default: - HDfprintf(stderr, "Unknown array class %u\n", (unsigned)(clsid)); + HDfprintf(stderr, "Unknown extensible array class %u\n", (unsigned)(clsid)); HDexit(4); } /* end switch */ @@ -191,8 +193,9 @@ get_H5FA_class(const uint8_t *sig) cls = H5FA_CLS_TEST; break; + case H5FA_NUM_CLS_ID: default: - HDfprintf(stderr, "Unknown array class %u\n", (unsigned)(clsid)); + HDfprintf(stderr, "Unknown fixed array class %u\n", (unsigned)(clsid)); HDexit(4); } /* end switch */ @@ -382,8 +385,9 @@ main(int argc, char *argv[]) status = H5D_btree_debug(f, H5P_DATASET_XFER_DEFAULT, addr, stdout, 0, VCOL, ndims, dim); break; + case H5B_NUM_BTREE_ID: default: - HDfprintf(stderr, "Unknown B-tree subtype %u\n", (unsigned)(subtype)); + HDfprintf(stderr, "Unknown v1 B-tree subtype %u\n", (unsigned)(subtype)); HDexit(4); } diff --git a/tools/misc/h5mkgrp.c b/tools/misc/h5mkgrp.c index 8dee706..1c1bba1 100644 --- a/tools/misc/h5mkgrp.c +++ b/tools/misc/h5mkgrp.c @@ -181,7 +181,7 @@ parse_command_line(int argc, const char *argv[], param_t *parms) /* Allocate space for the group name pointers */ parms->ngroups = (argc - opt_ind); - parms->groups = HDmalloc(parms->ngroups * sizeof(char *)); + parms->groups = (char **)HDmalloc(parms->ngroups * sizeof(char *)); /* Retrieve the group names */ curr_group = 0; diff --git a/tools/misc/h5repart.c b/tools/misc/h5repart.c index ffd52e8..f58af3a 100644 --- a/tools/misc/h5repart.c +++ b/tools/misc/h5repart.c @@ -261,13 +261,13 @@ main (int argc, char *argv[]) src_is_family = strcmp (src_name, src_gen_name); if ((src=HDopen(src_name, O_RDONLY,0))<0) { - perror (src_name); - exit (EXIT_FAILURE); + perror (src_name); + exit (EXIT_FAILURE); } if (HDfstat(src, &sb)<0) { - perror ("fstat"); - exit (EXIT_FAILURE); + perror ("fstat"); + exit (EXIT_FAILURE); } src_size = src_act_size = sb.st_size; if (verbose) fprintf (stderr, "< %s\n", src_name); @@ -290,7 +290,7 @@ main (int argc, char *argv[]) if (argno<argc) usage (prog_name); /* Now the real work, split the file */ - buf = HDmalloc (blk_size); + buf = (char *)HDmalloc(blk_size); while (src_offset<src_size) { /* Read a block. The amount to read is the minimum of: diff --git a/tools/misc/talign.c b/tools/misc/talign.c index 2d0a9d1..7eb4c50 100644 --- a/tools/misc/talign.c +++ b/tools/misc/talign.c @@ -37,11 +37,11 @@ const char *setname = "align"; int main(void) { - hid_t fil,spc,set; - hid_t cs6, cmp, fix; - hid_t cmp1, cmp2, cmp3; - hid_t plist; - hid_t array_dt; + hid_t fil=-1, spc=-1, set=-1; + hid_t cs6=-1, cmp=-1, fix=-1; + hid_t cmp1=-1, cmp2=-1, cmp3=-1; + hid_t plist=-1; + hid_t array_dt=-1; hsize_t dim[2]; hsize_t cdim[4]; @@ -137,6 +137,7 @@ int main(void) H5Dread(set, fix, spc, H5S_ALL, H5P_DEFAULT, data); fptr = (float *)(data + H5Tget_member_offset(fix, 1)); + H5Dclose(set); out: if(error < 0) { @@ -194,7 +195,9 @@ out: if(data) HDfree(data); H5Sclose(spc); + H5Tclose(cs6); H5Tclose(cmp); + H5Tclose(fix); H5Tclose(cmp1); H5Tclose(cmp2); H5Tclose(cmp3); diff --git a/tools/perform/Makefile.in b/tools/perform/Makefile.in deleted file mode 100644 index 292a65b..0000000 --- a/tools/perform/Makefile.in +++ /dev/null @@ -1,1548 +0,0 @@ -# Makefile.in generated by automake 1.14.1 from Makefile.am. -# @configure_input@ - -# Copyright (C) 1994-2013 Free Software Foundation, Inc. - -# This Makefile.in is free software; the Free Software Foundation -# gives unlimited permission to copy and/or distribute it, -# with or without modifications, as long as this notice is preserved. - -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY, to the extent permitted by law; without -# even the implied warranty of MERCHANTABILITY or FITNESS FOR A -# PARTICULAR PURPOSE. - -@SET_MAKE@ - -# -# Copyright by The HDF Group. -# Copyright by the Board of Trustees of the University of Illinois. -# All rights reserved. -# -# This file is part of HDF5. 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E.g.,"; \ - echo " HDF5_PARAPREFIX=/PFS/user/me"; \ - echo " export HDF5_PARAPREFIX"; \ - echo " make check"; \ - echo "**** end of Hint ****"; \ - fi - @for test in $(TEST_PROG_PARA) dummy; do \ - if test $$test != dummy; then \ - $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \ - RUNEXEC="$(RUNPARALLEL)" || exit 1; \ - fi; \ - done - @for test in $(TEST_SCRIPT_PARA) dummy; do \ - if test $$test != dummy; then \ - $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \ - fi; \ - done - @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ - echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\ - fi - -# Run test with different Virtual File Driver -check-vfd: $(LIB) $(PROGS) $(chk_TESTS) - @for vfd in $(VFD_LIST) dummy; do \ - if test $$vfd != dummy; then \ - echo "============================"; \ - echo "Testing Virtual File Driver $$vfd"; \ - echo "============================"; \ - $(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1; \ - HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ - fi; \ - done - -# Tell versions [3.59,3.63) of GNU make to not export all variables. -# Otherwise a system limit (for SysV at least) may be exceeded. -.NOEXPORT: diff --git a/tools/perform/chunk.c b/tools/perform/chunk.c index 74bcc46..0ea16e8 100644 --- a/tools/perform/chunk.c +++ b/tools/perform/chunk.c @@ -163,7 +163,7 @@ create_dataset (void) assert(dset>=0); /* The data */ - buf = calloc(1, SQUARE (DS_SIZE*CH_SIZE)); + buf = (signed char *)calloc(1, SQUARE (DS_SIZE*CH_SIZE)); H5Dwrite(dset, H5T_NATIVE_SCHAR, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf); free(buf); @@ -194,7 +194,7 @@ static double test_rowmaj (int op, size_t cache_size, size_t io_size) { hid_t file, dset, mem_space, file_space; - signed char *buf = calloc (1, (size_t)(SQUARE(io_size))); + signed char *buf = (signed char *)calloc (1, (size_t)(SQUARE(io_size))); hsize_t i, j, hs_size[2]; hsize_t hs_offset[2]; int mdc_nelmts; @@ -273,7 +273,7 @@ test_diag (int op, size_t cache_size, size_t io_size, size_t offset) hsize_t i, hs_size[2]; hsize_t nio = 0; hsize_t hs_offset[2]; - signed char *buf = calloc (1, (size_t)(SQUARE (io_size))); + signed char *buf = (signed char *)calloc(1, (size_t)(SQUARE (io_size))); int mdc_nelmts; size_t rdcc_nelmts; double w0; diff --git a/tools/perform/overhead.c b/tools/perform/overhead.c index 0288ffa..feabd3a 100644 --- a/tools/perform/overhead.c +++ b/tools/perform/overhead.c @@ -224,7 +224,7 @@ test(fill_t fill_style, const double splits[], if ((fd=HDopen(FILE_NAME_1, O_RDONLY, 0666)) < 0) goto error; if(FILL_RANDOM==fill_style) - had = calloc((size_t)cur_size[0], sizeof(int)); + had = (int *)calloc((size_t)cur_size[0], sizeof(int)); for (i=1; i<=cur_size[0]; i++) { diff --git a/tools/perform/perf_meta.c b/tools/perform/perf_meta.c index b52871e..2c3a19c 100644 --- a/tools/perform/perf_meta.c +++ b/tools/perform/perf_meta.c @@ -821,7 +821,7 @@ main(int argc, char **argv) if (H5Sclose(space) < 0) goto error; if (H5Sclose(small_space) < 0) goto error; - h5_cleanup(FILENAME, fapl); + h5_clean_files(FILENAME, fapl); #ifdef H5_HAVE_PARALLEL if(facc_type == FACC_MPIO) diff --git a/tools/perform/pio_perf.c b/tools/perform/pio_perf.c index 4db2249..509513b 100644 --- a/tools/perform/pio_perf.c +++ b/tools/perform/pio_perf.c @@ -1673,60 +1673,8 @@ usage(const char *prog) printf(" HDF5_MPI_INFO MPI INFO object key=value separated by ;\n"); printf(" HDF5_PARAPREFIX Paralllel data files prefix\n"); fflush(stdout); - } -} - -void debug_start_stop_time(io_time_t *pt, timer_type t, int start_stop) -{ -#if 1 - if (pio_debug_level >= 4) { - const char *msg; - int myrank; - - MPI_Comm_rank(pio_comm_g, &myrank); - - switch (t) { - case HDF5_FILE_OPENCLOSE: - msg = "File Open/Close"; - break; - case HDF5_DATASET_CREATE: - msg = "Dataset Create"; - break; - case HDF5_MPI_WRITE: - msg = "MPI Write"; - break; - case HDF5_MPI_READ: - msg = "MPI Read"; - break; - case HDF5_FINE_WRITE_FIXED_DIMS: - msg = "Fine Write"; - break; - case HDF5_FINE_READ_FIXED_DIMS: - msg = "Fine Read"; - break; - case HDF5_GROSS_WRITE_FIXED_DIMS: - msg = "Gross Write"; - break; - case HDF5_GROSS_READ_FIXED_DIMS: - msg = "Gross Read"; - break; - case HDF5_RAW_WRITE_FIXED_DIMS: - msg = "Raw Write"; - break; - case HDF5_RAW_READ_FIXED_DIMS: - msg = "Raw Read"; - break; - default: - msg = "Unknown Timer"; - break; - } - - fprintf(output, " Proc %d: %s %s: %.2f\n", myrank, msg, - (start_stop == TSTART ? "Start" : "Stop"), - pt->total_time[t]); - } -#endif -} /* debug_start_stop_time */ + } /* end if */ +} /* end usage() */ #else /* H5_HAVE_PARALLEL */ @@ -1736,13 +1684,12 @@ void debug_start_stop_time(io_time_t *pt, timer_type t, int start_stop) * parallel stuff. * Return: EXIT_SUCCESS * Programmer: Bill Wendling, 14. November 2001 - * Modifications: */ int main(void) { printf("No parallel IO performance because parallel is not configured\n"); return EXIT_SUCCESS; -} +} /* end main */ #endif /* !H5_HAVE_PARALLEL */ diff --git a/tools/perform/sio_engine.c b/tools/perform/sio_engine.c index 3b28ea7..5622810 100644 --- a/tools/perform/sio_engine.c +++ b/tools/perform/sio_engine.c @@ -181,7 +181,7 @@ do_sio(parameters param) } /* Allocate transfer buffer */ - if ((buffer = malloc(linear_buf_size)) == NULL){ + if ((buffer = (char *)malloc(linear_buf_size)) == NULL){ HDfprintf(stderr, "malloc for transfer buffer size (%zu) failed\n", linear_buf_size); GOTOERROR(FAIL); } diff --git a/tools/perform/sio_perf.c b/tools/perform/sio_perf.c index 7d75a2d..a69e929 100644 --- a/tools/perform/sio_perf.c +++ b/tools/perform/sio_perf.c @@ -481,16 +481,16 @@ run_test(iotype iot, parameters parms, struct options *opts) /* allocate space for tables minmax and that it is sufficient */ /* to initialize all elements to zeros by calloc. */ - write_sys_mm_table = calloc((size_t)parms.num_iters , sizeof(minmax)); - write_mm_table = calloc((size_t)parms.num_iters , sizeof(minmax)); - write_gross_mm_table = calloc((size_t)parms.num_iters , sizeof(minmax)); - write_raw_mm_table = calloc((size_t)parms.num_iters , sizeof(minmax)); + write_sys_mm_table = (minmax *)calloc((size_t)parms.num_iters , sizeof(minmax)); + write_mm_table = (minmax *)calloc((size_t)parms.num_iters , sizeof(minmax)); + write_gross_mm_table = (minmax *)calloc((size_t)parms.num_iters , sizeof(minmax)); + write_raw_mm_table = (minmax *)calloc((size_t)parms.num_iters , sizeof(minmax)); if (!parms.h5_write_only) { - read_sys_mm_table = calloc((size_t)parms.num_iters , sizeof(minmax)); - read_mm_table = calloc((size_t)parms.num_iters , sizeof(minmax)); - read_gross_mm_table = calloc((size_t)parms.num_iters , sizeof(minmax)); - read_raw_mm_table = calloc((size_t)parms.num_iters , sizeof(minmax)); + read_sys_mm_table = (minmax *)calloc((size_t)parms.num_iters , sizeof(minmax)); + read_mm_table = (minmax *)calloc((size_t)parms.num_iters , sizeof(minmax)); + read_gross_mm_table = (minmax *)calloc((size_t)parms.num_iters , sizeof(minmax)); + read_raw_mm_table = (minmax *)calloc((size_t)parms.num_iters , sizeof(minmax)); } /* Do IO iteration times, collecting statistics each time */ @@ -1405,52 +1405,5 @@ usage(const char *prog) printf(" HDF5_PREFIX Data file prefix\n"); printf("\n"); fflush(stdout); -} - -void debug_start_stop_time(io_time_t *pt, timer_type t, int start_stop) -{ - if (sio_debug_level >= 4) { - const char *msg; - - switch (t) { - case HDF5_FILE_OPENCLOSE: - msg = "File Open/Close"; - break; - case HDF5_DATASET_CREATE: - msg = "Dataset Create"; - break; - case HDF5_MPI_WRITE: - msg = "MPI Write"; - break; - case HDF5_MPI_READ: - msg = "MPI Read"; - break; - case HDF5_FINE_WRITE_FIXED_DIMS: - msg = "Fine Write"; - break; - case HDF5_FINE_READ_FIXED_DIMS: - msg = "Fine Read"; - break; - case HDF5_GROSS_WRITE_FIXED_DIMS: - msg = "Gross Write"; - break; - case HDF5_GROSS_READ_FIXED_DIMS: - msg = "Gross Read"; - break; - case HDF5_RAW_WRITE_FIXED_DIMS: - msg = "Raw Write"; - break; - case HDF5_RAW_READ_FIXED_DIMS: - msg = "Raw Read"; - break; - default: - msg = "Unknown Timer"; - break; - } - - fprintf(output, " %s %s: %.2f\n", msg, - (start_stop == TSTART ? "Start" : "Stop"), - pt->total_time[t]); - } -} /* debug_start_stop_time */ +} /* end usage() */ |