diff options
Diffstat (limited to 'utils')
-rwxr-xr-x | utils/subfiling_vfd/h5fuse.sh | 89 |
1 files changed, 0 insertions, 89 deletions
diff --git a/utils/subfiling_vfd/h5fuse.sh b/utils/subfiling_vfd/h5fuse.sh deleted file mode 100755 index 8170586..0000000 --- a/utils/subfiling_vfd/h5fuse.sh +++ /dev/null @@ -1,89 +0,0 @@ -#!/bin/bash -# -# Copyright by The HDF Group. -# All rights reserved. -# -# This file is part of HDF5. The full HDF5 copyright notice, including -# terms governing use, modification, and redistribution, is contained in -# the COPYING file, which can be found at the root of the source code -# distribution tree, or in https://www.hdfgroup.org/licenses. -# If you do not have access to either file, you may request a copy from -# help@hdfgroup.org. -# - -# Purpose: Combine subfiles into a single HDF5 file. Requires the subfiling -# configuration file either as a command-line argument, or the script will -# search for the *.config file in the current directory. - -GRN='\033[0;32m' -RED='\033[0;31m' -PUR='\033[0;35m' -NC='\033[0m' # No Color - -## CONFIG FILE CHECKS ## - -if [ $# -eq 0 ]; then - nfiles=$(find . -maxdepth 1 -type f -iname "*.config" -printf '.' | wc -m) - if [[ "$nfiles" != "1" ]]; then - echo -e "$RED More than one .config file found in current directory. $NC" - exit 1 - fi - file_config=$(find . -maxdepth 1 -type f -iname "*.config") -else - file_config=$1 -fi - -if [ ! -f "$file_config" ]; then - echo -e "$RED $file_config does not exist. $NC" - exit 1 -fi - -stripe_size=$(grep "stripe_size=" $file_config | cut -d "=" -f2) -if test -z "$stripe_size"; then - echo -e "$RED failed to find stripe_size in $file_config $NC" - exit 1 -fi - -subfiles=( $( sed -e '1,/hdf5_file=/d' $file_config ) ) -#for i in "${subfiles[@]}"; do -# echo "$i" -#done -if test -z "$subfiles"; then - echo -e "$RED failed to find subfiles list in $file_config $NC" - exit 1 -fi - -hdf5_file=$(grep "hdf5_file=" $file_config | cut -d "=" -f2) -if test -z "$hdf5_file"; then - echo -e "$RED failed to find hdf5 output file in $file_config $NC" - exit 1 -fi - -rm -f $hdf5_file - -## COMBINE SUBFILES INTO AN HDF5 FILE ## - -skip=0 -status=$nfiles -START="$(date +%s%N)" -while [ $status -gt 0 ]; do - icnt=0 - for i in "${subfiles[@]}"; do - fsize=$(wc -c $i | awk '{print $1}') - if [ $(($skip*$stripe_size)) -le $fsize ]; then - EXEC="dd count=1 bs=$stripe_size if=$i of=$hdf5_file skip=$skip oflag=append conv=notrunc" - echo -e "$GRN $EXEC $NC" - err="$( $EXEC 2>&1 > /dev/null &)" - icnt=$(($icnt+1)) - else - subfiles=("${subfiles[@]:0:$icnt}" "${subfiles[@]:$(($icnt+1))}") - status=${#subfiles[@]} - fi - done; wait - skip=$(($skip+1)) -done -END=$[ $(date +%s%N) - ${START} ] -DURATION_SEC=$(awk -vp=$END -vq=0.000000001 'BEGIN{printf "%.4f" ,p * q}') -echo -e "$PUR COMPLETION TIME = $DURATION_SEC s $NC" - - |