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* Convert main.yml CI into callable workflows (#3529)Allen Byrne2023-09-181-640/+6
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* Tidy the list of options in main.yml (#3181)Dana Robinson2023-06-271-4/+63
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* Update Linux workflows (#3173)develop-readmeDana Robinson2023-06-221-12/+13
| | | | * Consolidate environment setup * Turn on ros3 VFD in CMake (Linux only)
* Build the ros3 VFD in GitHub actions (#3090)Dana Robinson2023-06-101-4/+20
| | | | | * Build the ros3 VFD in GitHub actions * Add curl to list of packages to install * Disable CMake while we figure out the curl path issues
* Develop gh doxy (#3041)Allen Byrne2023-06-051-4/+19
| | | | | * Add doxygen generation to daily-build and main * Add doxygen option to matrix
* Cleans up Java JNI warnings and add java to -Werror checks (#2383)Dana Robinson2023-05-271-2/+4
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* Bump GitHub Autotools actions to gcc-12 (#3015)Dana Robinson2023-05-251-4/+4
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* Fix assert in Debug Windows Java JNI (#3012)Dana Robinson2023-05-251-2/+1
| | | | | | | | | Use of an uninitialized H5L_info2_t struct caused some JNI tests to raise asserts, causing a dialog box to be emitted, which would hang automated tests. Initializing the struct fixes the problem. This change also re-enables tests in the Windows Debug GitHub actions.
* Only run ttsafe in thread-safe GitHub actions (#2777)Dana Robinson2023-05-251-8/+24
| | | Also fixes broken thread-safety testing (due to a typo in the GitHub action checks)
* Update GitHub macOS actions to v13 (#2999)Dana Robinson2023-05-241-3/+3
| | | | | * Update macOS to 13 * Fix the DYLD_LIBRARY_PATH issue on macOS 12 & 13 + CMake that caused the accum test to fail
* Fix plugin cache variable name (#2988)Allen Byrne2023-05-221-1/+7
| | | | * Fix plugin cache variable name * Prefix plugin project local variables
* ci: set minimal permissions on GitHub Workflows (#2980)Diogo Teles Sant'Anna2023-05-181-0/+3
| | | Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>
* Change defaults of standard filters. (#2927)Allen Byrne2023-05-181-2/+2
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* Update concurrency group for main CI workflow (#2768)jhendersonHDF2023-04-171-1/+1
| | | Updates main CI workflow concurrency group so that the group should be a unique string formed as "workflow file-commit" or "workflow file-PR number". This should only cancel actions for a PR if the same PR is committed to while the actions are running.
* Use additional CPUs in GitHub actions (#2695)Dana Robinson2023-04-121-4/+4
| | | | | | * Build: 3 CPUs * Tests: 2 CPUs For both Autotools and CMake
* Add concurrency option to cancel in-progress jobs (#2539)Scot Breitenfeld2023-03-131-1/+6
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* Add fetchcontent for compression libs and fix cmake config (#2487)Allen Byrne2023-02-261-1/+7
| | | | | | | | | | | | | * Add fetchcontent for compression libs and fix cmake config * MSDOS is a reserved define name * Add release note and update install doc for FetchContent * Add CI test for FetchContent * Use LINK_COMP_LIBS instead of STATIC_LIBRARY for depends * Use general link
* Develop toolchain lowercase names and updates (#2426)Allen Byrne2023-02-171-1/+1
| | | | | | | | | | | | | * lowercase the toolchain filenames * Change name of option define * Update CI with changed toolchain name * Correct Intel compiler names * Account for Intels name for compiler based on clang * Make icx default and rename classic to icc
* Add parallel Autotools -Werror checks (#2384)Dana Robinson2023-02-131-0/+46
| | | New actions added to GitHub CI to build parallel HDF5 w/ CFLAGS=-Werror. Since the GitHub runners are so underpowered, we just configure, build, and install but do not run tests. This covers Autotools only, both debug and release.
* Drop non-develop branches in main.yml (#2446)Dana Robinson2023-02-121-1/+1
| | | | | There's no reason to list 1.10, etc. in the list of branches where this flavor of main.yml applies. Those branches have their own main.yml files.
* Add szip/libaec to GitHub CI and fix warnings (#2438)Dana Robinson2023-02-091-2/+14
| | | | | | | | szip (or libaec) is currently not tested in CI. This adds szip to the the Autotools GitHub CI actions on Linux when building with the Autotools. This PR also cleans up a few warnings that remained in the szip- related code so the -Werror check will pass.
* Adds 'make install' and 'make check-install' to the CI (Autotools only) (#2381)Dana Robinson2023-01-031-0/+14
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* Restore line 264 of main.yml: "thread_safety:" (#2374)Larry Knox2022-12-281-0/+1
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* Fix for Autotools --disable-deprecated-symbols (#2363)Dana Robinson2022-12-241-7/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | * Fix for Autotools --disable-deprecated-symbols When we added v116 as a valid option, we left the default as v114 so using --disable-deprecated-symbols leads configure to complain that you can't set a default API that was deprecated. The GitHub action didn't catch this because it explicitly specifies v116 This only affects develop w/ the Autotools when --disable-deprecated-symbols is requested. * Added v116 & default to the --with-default-api-version help string The Autotools --with-default-api-version help string was missing v116. This has been added, as well as a "default" target so the CI can catch version problems when we forget to update the defaults upon creating a new major version. The GitHub CI also now uses "default" as the target for the deprecated symbols build. * Fixes the 1.14 API GitHub CI threadsafe/build_mode This action still had the bug we fixed where we set the build mode and threadsafety using an array of size one instead of an object.
* H5F_LIBVER_LATEST changes for move to 1.15 (#2288)Allen Byrne2022-12-211-1/+23
| | | | | | | | | | | | | | | * H5F_LIBVER_LATEST changes for move to 1.15 * Add new default api check * Format fixes * Fix default configure * fix lib version tests * Fix another version variable * Add 1.14 doc link
* Removes duplicated build mode from -Werror GitHub actions (#2314)Dana Robinson2022-12-161-2/+2
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* Converts the YAML build mode arrays to objects in special runs (#2308)Dana Robinson2022-12-161-37/+41
| | | | | | | | | | | | | * Converts the YAML build mode arrays to objects in special runs * Adds a dump of the matrix context for each test This would have made it a LOT easier to debug the build_mode issues... * Disable the mirror VFD in the -Werror checks We can re-enable this after we fix the warnings, but I don't want to conflate code and GitHub changes, so this is a better way to get the CI to pass for now.
* Fixes broken CI matrix actions involving -Werror and API versions (#2302)Dana Robinson2022-12-151-7/+7
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* Update windows worker compilers (#2286)Allen Byrne2022-12-141-1/+1
| | | | | | | * Update windows worker compilers * Update bin and test issues * Update script and revert java test
* Develop fix ubuntu 22.04 openmpi install on github (#2268)Larry Knox2022-11-281-1/+1
| | | | | * Update install openmpi-bin to also install mpi-default-dev instead of libopenmpi-dev. This according to https://bugs.launchpad.net/ubuntu/+source/openmpi/+bug/1870780.
* Develop ubuntu 20.04 (#2267)Larry Knox2022-11-231-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | * Use ubuntu-20.04 for github autotools parallel tests until parallel configure is fixed on ubuntu 22.04. * Remove inactive developers from CODEOWNERS. * Temporarily cat config.log for autotools build in github actions. * Try ubuntu-latest. * Attempt to cat config.log even when configure fails. * Fix syntax. * Try again * Try again * Try again. * Back to original temporary fix. * Install libopenmpi-dev with openmpi-bin, which was installed as a dependency prior to ubuntu-22.04.
* Use ubuntu-20.04 for github autotools parallel tests until parallel (#2264)Larry Knox2022-11-181-1/+1
| | | | | | * Use ubuntu-20.04 for github autotools parallel tests until parallel configure is fixed on ubuntu 22.04.
* Remove hard-coded version text (#2260)Allen Byrne2022-11-161-2/+2
| | | | | * Remove hard-coded version text * Use macOS 11 until accum test is fixed see #2261
* running on node-16 insteas of Node.js 12 (#2190)Scot Breitenfeld2022-10-261-1/+1
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* Cleans final production mode warnings from H5Shyper.c (#2163)Dana Robinson2022-10-141-1/+23
| | | | | | | | | | | | | | | | | | | * H5S__hyper_free_span_info() returns herr_t (not checked) * Set up H5S__hyper_free_span_info() error handling * Set up H5S__hyper_free_span() error handling * Added error handling to H5S_HYPER_ADVANCE_SPAN * Handled errors in H5S__hyper_iter_get_seq_list_gen() * Added a production mode build target for -Werror * Committing clang-format changes * Updated names for -Werror checks Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* GitHub workflow cleanup (#2047)Dana Robinson2022-08-221-192/+332
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Cleans up main GitHub workflow(s) * Combines main.yml and pr-check.yml, which differed trivially * Reduces config redundancy via proper use of the matrix scheme * Adds build-only configs for: - Version 1.6 default API - No deprecated symbols - Parallel HDF5 * The -Werror config was converted to build-only * Makes the naming scheme more uniform * Spaces out the code and adds comments * Typo fix * Fix mirror VFD CMake configure typo * Debugging hack * Undo debug hack and fix CMake build mode * Set CC=mpicc for parallel builds * Another attempt to fix parallel builds * Updates comments in main.yml * Fixes a v16 API bug in the mirror VFD test code * Committing clang-format changes * Added checks for v1.8 - 1.12 APIs * Manually specify Windows configs Java debug builds time out when running tests on Windows. We'll disable them in debub mode while we investigate. * Revert "Manually specify Windows configs" This reverts commit d710d8d21990a57084841e82bd9f7e7d9f53a244. * Skip Debug Windows configs while we investigate Java H5L timeouts Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Adds the mirror and direct VFDs to GitHub actions (#1871)Dana Robinson2022-07-111-3/+27
| | | Both Autotools and CMake
* Adds a -Werror debug Autotools test and updates build modes (#1833)Dana Robinson2022-06-301-2/+27
| | | | | | | | | | * Adds a -Werror debug Autotools test and updates build modes * Un-excludes the workflow files * Strip out -Werror from CFLAGS when running configure tests This causes spurious test failures when the configuration test programs raise warnings.
* Set Autotools build mode correctly in GitHub workflows (#1834)Dana Robinson2022-06-301-15/+27
| | | | | * Sets build mode correctly w/ Autotools * Updates GitHub gcc and installs OpenMPI
* Adds additional files/paths to ignore for github actions (#1585)Dana Robinson2022-04-051-0/+3
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* Removes the MANIFEST file and unused release files (#1497)Dana Robinson2022-03-151-1/+0
| | | | | * Removes the MANIFEST file and unused release files * Updated tar command
* change windows os from 2016 to latest (#1241)Allen Byrne2021-12-011-4/+4
| | | | | | | * change windows os from 2016 to latest * Upgrade the VS version used. * specify windows VS version
* Java and fortran cmake changes (#694)Allen Byrne2021-05-291-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace * GH #359 implement and fix tools 1.6 API usage * remove excessive comments * Flip inits to correct ifdef section * rework ifdef to be simpler * format issue * Reformat ifdef inits * remove static attribute * format compliance * Update names * Revert because logic relies on float not being int * Changes noticed from creating merge of #412 * Double underscore change * Correct compiler version variable used * Remove header guard underscores * Whitespace cleanup * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * correct window os name * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * HDFFV-11113 long double in tools * HDFFV-11113 add note * Disable long double tests for now * HDFFV-11228 remove arbitrary CMake warning groups. * Make each flag a string * Some Javadoc warning fixes * Updated javadoc fixes * # WARNING: head commit changed in the meantime HDFFV-11229 Fix long double usage in tools and java Changed h5dump and h5ls to just print 128-bit for long double type. Added test and file for dataset and attributes with all three float types. * Committing clang-format changes * HDFFV-11229 Add release note * HDFFV-11229 windows testfile needed * fix typo * Remove non supported message text * HDFFV-11229 - change ldouble test to check both native and general * HDFFV-11229 add second file compare * HDFFV-11229 fix reference file * HDFFV-11229 autotools check two refs * HDFFV-11229 revert back to removal of NATIVE_LDOUBLE in tools output * Committing clang-format changes * Update release note * Update attribute type of ref file * Change source of ninja for macs * try port instead of brew * Recommended is to use brew. * Undo non long double changes * remove unneeded file * Fix perl and doxygen CMake code * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument * Add stamp files to BYPRODUCTS * Only one copy of file exists * Fix custom cmmand depends targets * Fix fortran custom command DEPENDS * Add LD_LIBRARY_PATH to tests * Add custom target for DEPENDS * Add h5detect conditionaly to generated target DEPENDS * Correct DEPENDS targets * Parallel builds need the mpi compiler for pkgconfig scripts. * install only if MPI build * Fortran target depends * Remove incorrect source attribute * doxygen adjustments * doxygen build updates * Correct version * Correct function version - function has been merged to 1.12 * Correct version string for map functions * Cleanup warnings for tools debug builds * TRILAB-227 - fix indexing for h5diff selections * Correct location of pos to index function call * TRILAB-227 Enable test * Quote subset args * Use MATCHES because of AppleClang * if blocks needed for build modes * Update list of DT platforms * VS2019 correctly displays float values * revert VS2019 change * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Java reference functions updated enabled fortran in cmake gcc action yaml file java reference test changed to correctly test refs jni reference functions that create ids changed to use jni id logging * Correct BYPRODUCTS argument * Correct more genereated files BYPRODUCTS * BYPRODUCTS must have unique locations * Fix typo Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* clang format push commit for develop (#453)Allen Byrne2021-03-111-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace * GH #359 implement and fix tools 1.6 API usage * remove excessive comments * Flip inits to correct ifdef section * rework ifdef to be simpler * format issue * Reformat ifdef inits * remove static attribute * format compliance * Update names * Revert because logic relies on float not being int * Changes noticed from creating merge of #412 * Double underscore change * Correct compiler version variable used * Remove header guard underscores * Whitespace cleanup * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * correct window os name
* Java replace switch on string (#273)Allen Byrne2021-01-271-4/+82
| | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit
* chkmanifest will run autogen (#102)Allen Byrne2020-11-201-0/+1
| | | | | | | * chkmanifest will run autogen * remove extension on command * run autogen first
* github environment variable changeAllen Byrne2020-10-061-2/+2
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* Actions updatesAllen Byrne2020-10-021-1/+7
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* Update actions - split push/pull-request commitsAllen Byrne2020-09-241-2/+0
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* CMake and script changes for clang-formatAllen Byrne2020-09-041-2/+58
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