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* Disable doxygen as errors for netcdf (#3900)Allen Byrne2023-12-201-1/+1
| | | * disable building doxygen for netcdf test
* Add intel binaries to daily-build/release workflows (#3895)Allen Byrne2023-12-182-12/+186
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* Add variable option syncing for examples (#3885)Allen Byrne2023-12-141-1/+1
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* Bump the github-actions group with 4 updates (#3894)dependabot[bot]2023-12-1324-46/+46
| | | | | | Bumps the github-actions group with 4 updates: [actions/checkout](https://github.com/actions/checkout), [ossf/scorecard-action](https://github.com/ossf/scorecard-action), [github/codeql-action](https://github.com/github/codeql-action) and [actions/setup-python](https://github.com/actions/setup-python). Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Feat: Hashpin sensitive dependencies on GitHub Actions and enable Dependabot ↵Diogo Teles Sant'Anna2023-12-133-14/+24
| | | | | | | | | | | | | | | to update them monthly (#3892) * feat: hashpin sensitive dependencies on GHAs Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com> * feat: enable dependabot for monthly updates on GHA Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com> --------- Signed-off-by: Diogo Teles Sant'Anna <diogoteles@google.com>
* Updated URL in funding.yml (#3882)Lori Cooper2023-12-041-1/+1
| | | Using new shortened URL, might look better.
* Develop merge examples (#3851)Allen Byrne2023-11-271-1/+1
| | | | | | | | | * Merge examples repo into library * Change grepTest to be more fault-tolerant * Update examples macro file * Exclude all Fortran examples from doxygen
* Change dest for doxygen (#3856)Allen Byrne2023-11-151-0/+1
| | | * Switch doxygen refs to hdf5/develop
* Fixes for CI and presets (#3853)Allen Byrne2023-11-152-2/+2
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* Add GitHub actions for testing VOL connectors (#3849)jhendersonHDF2023-11-157-0/+773
| | | | | | | | | | | | | | | | * Fix issue with HDF5_VOL_ALLOW_EXTERNAL CMake variable * Add initial API test workflow * Initialize parallel testing with MPI_THREAD_MULTIPLE when testing API * Add CMake variable to allow specifying a VOL connector's package name * Remove call to MPI_Init in serial API tests While previously necessary, it now interferes with VOL connectors that may need to be initialized with MPI_THREAD_MULTIPLE
* Add intel oneapi windows build to CI CMake (#3836)Allen Byrne2023-11-102-36/+138
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* Update NVHPC version from 23.7 to 23.9. (#3736)H. Joe Lee2023-11-022-18/+18
| | | Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Set NVHPC maximum optimization level to -O1 for now (#3800)jhendersonHDF2023-11-012-11/+11
| | | | | | | | | | | | | | * Set NVHPC maximum optimization level to -O1 for now Compiling HDF5 with NVHPC 23.5 - 23.9 results in test failures in 4 different test files that need to be resolved. Since those tests pass with an optimization level of -O1 (and -O0) and it is currently unclear whether the test failures are due to issues in HDF5 or issues in the 'nvc' compiler, set the maximum optimization level for NVHPC to -O1 until the test failures are resolved. * Disable nvhpc Java testing in CMake and amend known issues * Re-enable testing of Autotools nvhpc
* Add processing of NVHPC flags in linux-gnulibc1 file (#3804)jhendersonHDF2023-11-011-5/+5
| | | * Disable testing as tests are failing the same as in CMake
* Fix h5py CI failure. (#3805)H. Joe Lee2023-10-311-4/+5
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* Cancel running GitHub workflows on push to same PR (#3772)jhendersonHDF2023-10-265-5/+5
| | | | | * Cancel running GitHub workflows on push to same PR * Remove github.sha from workflow concurrency groups
* Cache installation of OpenMPI for AOCC action (#3774)jhendersonHDF2023-10-251-9/+16
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* Update fortran action step (#3748)Allen Byrne2023-10-231-2/+6
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* Add NVidia compiler support and CI (#3686)Allen Byrne2023-10-188-123/+186
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* Add AOCC GitHub Action (#3504) (#3657)H. Joe Lee2023-10-141-0/+66
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* Remove old EXTERNALPROJECT_ADD in favor of FETCH_CONTENT (#3624)Allen Byrne2023-10-042-6/+0
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* Adds link to h5fuse.sh in testpar for autotools (#3557)Scot Breitenfeld2023-09-222-1/+3
| | | | * Make the h5fuse.sh utility available to parallel subfiling tests so h5fuse testing is not skipped.
* Convert main.yml CI into callable workflows (#3529)Allen Byrne2023-09-1822-774/+1380
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* Add NVHPC 23.7 GitHub Actions (#3509)H. Joe Lee2023-09-142-0/+114
| | | | | * Add NVHPC 27.3 GitHub Actions * Address @derobins review
* Create scorecard.yml (#3508)Dana Robinson2023-09-051-0/+72
| | | Bring in OSSF Scorecard code scanner as a GitHub action
* Disable SZIP for Intel oneAPI Action (#3449)H. Joe Lee2023-08-312-5/+6
| | | | | * Disable SZIP for Intel oneAPI Action * Disable Fortran and parallel
* Add a CVE regression test action (#3445)Dana Robinson2023-08-301-0/+51
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* Add Intel oneAPI actions (#2949) (#2977)H. Joe Lee2023-08-232-0/+120
| | | | | | | | | * ci: add Intel oneAPI actions (#2949) * ci: fix CMake installation * ci: use absolute paths for libtool installation * ci(oneAPI): update compiler versions and use cron
* restore CI tarball name prefix to match bin/release (#3385)Allen Byrne2023-08-161-2/+2
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* Correct CI settings (#3384)Allen Byrne2023-08-161-2/+2
| | | | | * Correct CI settings * Correct plugin file name
* Update files to skip list and ignore_words_list (#3321)Larry Knox2023-08-021-2/+2
| | | | | * Update files to skip list and ignore_words_list for codespell to not check files generated by autotools. Autotools generate misspellings that can't be fixed in HDF5 code.
* Remove py-pip from h5py action (#3265)H. Joe Lee2023-07-271-4/+2
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* Disable h5py until fixed properly without spack (#3243)Allen Byrne2023-07-141-2/+2
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* Switch CI to use release script (#3242)Allen Byrne2023-07-133-32/+42
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* merge bbrelease to release (#3232)Allen Byrne2023-07-121-22/+63
| | | | | * merge bbrelease to release * Fix pre-req workflow
* fix gh action if statements (#3213)Allen Byrne2023-06-301-4/+4
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* Update actions for release option, fix branch for daily build (#3185)Allen Byrne2023-06-295-131/+245
| | | | | | | * Update actions for release option, fix branch for daily build * Scheduled workflows run on latest commit on the develop * Add snapshots location
* Tidy the list of options in main.yml (#3181)Dana Robinson2023-06-271-4/+63
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* Fix the doxygen to gh pages and artifact creation (#3176)Allen Byrne2023-06-261-7/+2
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* Update Linux workflows (#3173)develop-readmeDana Robinson2023-06-221-12/+13
| | | | * Consolidate environment setup * Turn on ros3 VFD in CMake (Linux only)
* Add missing space in zip command (#3167)Allen Byrne2023-06-221-1/+1
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* speed-up building HDF5 (#3087)Scot Breitenfeld2023-06-202-2/+2
| | | Disables building the tests when building the netCDF, etc.
* Correct the zip usage (#3153)Allen Byrne2023-06-191-1/+1
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* Fix the snapshots workflow (#3148)Allen Byrne2023-06-163-6/+19
| | | | | | * Add upload url as artifact * Change doxygen path and comment log-url upload * zip doxygen files for upload * add workspace var
* Define minimal permissions for new GitHub workflows (#3147)Diogo Teles Sant'Anna2023-06-164-0/+15
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* Fix gh pages so that the doxygen files are uploaded (#3102)Allen Byrne2023-06-131-20/+16
| | | | | | * Add workspace path * add debug * Make one job so workspace files are available * Put doxygen docs under docs folder in gh-pages
* Add Mark Kittisopikul to CODEOWNERS (#3111)Dana Robinson2023-06-131-1/+1
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* Build the ros3 VFD in GitHub actions (#3090)Dana Robinson2023-06-101-4/+20
| | | | | * Build the ros3 VFD in GitHub actions * Add curl to list of packages to install * Disable CMake while we figure out the curl path issues
* Remove template title text ([BUG], etc.) (#3093)Dana Robinson2023-06-102-4/+4
| | | We use labels for this now
* ci: add h5py action (#2986) (#3028)H. Joe Lee2023-06-081-0/+36
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