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* [svn-r15757] Bug #1312Pedro Vicente Nunes2008-10-022-148/+339
| | | | | | | Solution: Check for the existence of chunks before pruning them (an assertion was triggered when attempting to do so) Tested: windows , linux, solaris
* [svn-r15755] Description:Quincey Koziol2008-10-024-17/+117
| | | | | | | | | | | | | | | | | | | | | | Fix some minor problems w/extensible array super blocks and extend tests. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15749] Description:Scot Breitenfeld2008-10-012-4/+3
| | | | Removed blank lines
* [svn-r15748] Fixed spelling errorsScot Breitenfeld2008-10-011-3/+2
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* [svn-r15746] Description:Quincey Koziol2008-10-0118-33/+935
| | | | | | | | | | | | | | | | | | | | | Add support for extensible array "super block". Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15744] Description:Scot Breitenfeld2008-10-012-15/+0
| | | | Removed extraneous comments and unused code.
* [svn-r15741] Description:Quincey Koziol2008-09-301-0/+5
| | | | | | | | | | | | | | | | | | | | | Extend testing for data block reachable from the index block. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15738] Description:Quincey Koziol2008-09-302-4/+11
| | | | | | | | | | | | | | | | | | | | | | Correct a couple of minor bugs for handling data blocks from index block and extend tests further. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15737] Description:Scot Breitenfeld2008-09-308-19/+123
| | | | | Changed the tests so that the *.h5 test files are removed depending on the HDF5_NOCLEANUP environment variable. bug 696
* [svn-r15733] #1307Pedro Vicente Nunes2008-09-301-0/+3
| | | | | | A space id was not closed in H5PTopen Tested: windows, linux
* [svn-r15723] Purpose: Add h5import test to WindowsScott Wegner2008-09-292-1/+6
| | | | | | | | Description: Add a new test for h5import to check for alignment. Also fix the failing h5repack test, now that ublock has been added to svn. Tested VS2005 on WinXP
* [svn-r15721] Added a file with user block data to be used by the h5repack ↵Pedro Vicente Nunes2008-09-292-1/+2
| | | | windows shell script only Note: for the unix shell script this file is not used
* [svn-r15713] Snapshot version 1.9 release 19HDF Tester2008-09-289-61/+61
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* [svn-r15711] Purpose:Albert Cheng2008-09-271-7/+31
| | | | | | | | | | features. Description: Added -shlib tests and verbosity control. Tested Platform: Kagiso.
* [svn-r15705] bug fixPedro Vicente Nunes2008-09-262-0/+1
| | | | | | make a test generate a LE output for test portability tested: linux, solaris
* [svn-r15704] I changed the return values of H5Fget_obj_ids and ↵Raymond Lu2008-09-2612-75/+132
| | | | | | | | H5Fget_obj_count to ssize_t and modified C++ and Fortran API functions. This is for bug #1245. Tested on smirom, linew, and kagiso.
* [svn-r15703] Description:Quincey Koziol2008-09-259-617/+215
| | | | | | | | | | | | | | | | | | | | | | Further progress on extensible array implementation - add support for more data blocks from index block. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15701] Description:Quincey Koziol2008-09-251-12/+4
| | | | | | | | | | | | | | | | | | | | | Remove some unused variables. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15699] Bug fix #1281Pedro Vicente Nunes2008-09-256-31/+47
| | | | | | | | | | The TEXTFPE was described in the usage (read floats in scientific notation) but was not implemeneted. Solution: remove TEXTFPE from the help system and have the TEXTFPE input type do the same thing as TEXTPF currently does to support backwards compatibility (the format read for both TEXTFPE and TEXTPF is %f) added a test tested: windows, linux
* [svn-r15696] Description:Scot Breitenfeld2008-09-251-5/+7
| | | | Fix for test of H5Tget_native_type_f
* [svn-r15693] Description:Scot Breitenfeld2008-09-242-30/+58
| | | | Added test for h5tget_native_type_f
* [svn-r15692] Description:Scot Breitenfeld2008-09-241-16/+20
| | | | Added the optional 'mounted' variable to H5Gget_info_by_idx_f/H5Gget_info_f/H5Gget_info_by_name_f to see that it passes the correct values.
* [svn-r15691] Cosmetic changes.Scot Breitenfeld2008-09-241-3/+2
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* [svn-r15690] Description:Scot Breitenfeld2008-09-242-71/+70
| | | | In nH5Sget_select_bounds_c swapped array bounds to account for C and Fortran reversed array notation.
* [svn-r15689] Description:Scot Breitenfeld2008-09-242-6/+224
| | | | Added additional tests for h5sget_select_bounds_f
* [svn-r15688] Description:Scot Breitenfeld2008-09-232-1/+756
| | | | | Added additional tests for h5sget_select_hyper_blocklist_f and 5sget_select_elem_pointlist_f
* [svn-r15687] Description:Scot Breitenfeld2008-09-232-27/+64
| | | | | | | | Fixed nh5sget_select_hyper_blocklist_c nh5sget_select_elem_pointlist_ for bug 1319. by transposing arrays for C-FORTRAN convention.
* [svn-r15684] New feature (h5diff -c)Pedro Vicente Nunes2008-09-231-0/+2
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* [svn-r15682] Purpose: fix bug 1298Neil Fortner2008-09-229-47/+228
| | | | | | | | | | | Description: The optimized "subset" compound conversion function would improperly copy the "blank" space at the end of compound types. Modified H5T_conv_struct_init to detect when the subset type has extra space at the end, and calculate the size of the data that should be copied into the conversion buffer for each element. Changes to the functions that implement these conversions. Tested: kagiso, linew, smirom (h5committest)
* [svn-r15681] Description:Quincey Koziol2008-09-222-3/+255
| | | | | | | | | | | | | | | | | | | | | | Correct small error in allocating data block elements and add some more tests. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15678] formatted codePedro Vicente Nunes2008-09-221-4/+8
| | | | tested: windows, linux
* [svn-r15676] Description:Quincey Koziol2008-09-2229-182/+164
| | | | | | | | | | | | | | | | | | | | | | | Centralize all macros for declaring "magic numbers"/signatures for objects in the file into src/H5Fprivate.h, so it's easier to know what values have already been defined, etc. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15675] Purpose: Add new source file H5EAdblock.c to Windows.Scott Wegner2008-09-224-0/+14
| | | | | | | | Description: New source file H5EAdblock.c was added to the library. This checkin adds the file to our Windows projects, hdf5 and hdf5dll (VS2005 and VS.NET project files) Tested: Build only, VS2005 on WinXP
* [svn-r15674] Description:Quincey Koziol2008-09-2220-178/+1854
| | | | | | | | | | | | | | | | | | | | | | Add base support for extensible array "data blocks" to code, tests and h5debug. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15673] Description:Scot Breitenfeld2008-09-221-1/+1
| | | | Changed the error check string to match the function being called, changed the string H5Sselect_all to H5Sselect_none
* [svn-r15668] Purpose: Add feature requested in bug #1282Neil Fortner2008-09-2115-60/+328
| | | | | | | | | | Description: Adds capability to h5ls to traverse external links when the -r (recursive) option is given. Changes to the way absolute path names are patched in h5trav.c. Changes to the way recursive traversal starting from a non-root group is handled (which also fixes some preexisting issues). Tests added for these cases. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15667] Snapshot version 1.9 release 18HDF Tester2008-09-218-21/+21
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* [svn-r15665] Bug fix: (ID 1157)Albert Cheng2008-09-191-2/+4
| | | | | | | | | | | | | | | | | | | Description: Program would crash, complaining MPI calls were invoked after MPI_Finalize() has occurred. Previously, H5close() before MPI_Finalize() would remove the crash. Solution: It turned out that two H5 property objects (mpio_pl and acc_tpl) were not closed before MPI_Finalize(). In the at_exit code, HDF5 library attempted to close them by releasing the MPI Communicators in them too. That was the error. Adding code to close them properly before MPI_Finalize() took care things. Tested: Only in kagiso parallel. Did not run h5committest since kagiso would have been the one running parallel test. This part of code would not be compiled at all in non-phdf5 mode.
* [svn-r15664] fix comments Pedro Vicente Nunes2008-09-191-8/+15
| | | | tested: linux
* [svn-r15661] Purpose: Add szip/zlib link dependencies to Windows earray[dll] ↵Scott Wegner2008-09-192-42/+42
| | | | | | | projects Description: earray[dll] builds were failing on Windows because of missing link dependencies to szip and zlib libraries (amongst other reasons). This checkin adds those dependencies.
* [svn-r15660] Purpose: Fix minor Windows issues in new H5EA interface.Scott Wegner2008-09-192-9/+9
| | | | | | | | | | | | | Description: We've run into a few Windows-specific problems with the new H5EA interface. In particular, this checkin makes the following changes: -- Change shutdown defined in earray.c to shutdown_ea, to avoid conflicting with another Windows-specific system call. -- Prefix H5EA_get in H5EAprivate.h with H5_DLL, so the function is properly exported in Windows DLL version. These changes shouldn't break any other platforms. Tested: VS2005 on WinXP h5committest (linew kagiso smirom)
* [svn-r15659] Purpose: Fix Windows Fortran DLL definitions fileScott Wegner2008-09-192-44/+45
| | | | | | | | Description: We recently moved the Windows-specific fortran source code into a separate file for specifying DLL exports. However there were a couple definitions missing in the port from 1.8 to the trunk branch. This checkin correctly includes the .def file into our Windows project, and adds the missing definitions to hdf5_fortrandll.def. Tested: VS2005 on WinXP
* [svn-r15658] Purpose: Replace __func__ usage with FUNC macroScott Wegner2008-09-191-16/+16
| | | | | | | | Description: Some compilers (i.e. Visual Studio on Windows) don't support the C99 keyword __func__. It does, however, have a similar keyword, __FUNCTION__. In H5EApkg.h we define a macro, FUNC, which will pick the right version and use it accordingly. This checkin changes H5EA.c to use FUNC instead of __func__. Tested: h5committest (linew smirom kagiso)
* [svn-r15656] Purpose: fix bug 1286Neil Fortner2008-09-188-53/+685
| | | | | | Description: Added configure test to see if pointer alignment restrictions are enforced (as in dereferencing an unaligned pointer causes an error). Added code in H5Tvlen.c to avoid dereferencing unaligned pointers, conditionally compiled based on the configure test. Added test case in dtypes.c which would previously cause such machines to fail. Tested: kagiso, smirom, linew (h5committest); linew64
* [svn-r15655] Changed the absolute path of the data file to a relative path.Christian Chilan2008-09-181-3/+7
| | | | Tested on kagiso, smirom, and linew.
* [svn-r15653] cleaned warningsPedro Vicente Nunes2008-09-183-74/+22
| | | | tested: windows, linux
* [svn-r15652] Cleaned compiler warnings Pedro Vicente Nunes2008-09-183-26/+64
| | | | | | Bug fix: do not print print compression ratio when the requested filter is NONE Tested: windows, linux
* [svn-r15650] Cleaned compiler warnings Pedro Vicente Nunes2008-09-181-4/+4
| | | | | | Bug fix: change the options block size variable from int to hsize_t, to match the H5Pset_userblock call Tested: windows, linux
* [svn-r15649] Included macros for portability of h5perf code among HDF5 versions.Christian Chilan2008-09-171-13/+35
| | | | Tested on kagiso, abe, and cobalt.
* [svn-r15643] add a failure condition of writing user blockPedro Vicente Nunes2008-09-171-161/+178
| | | | Tested: windows, linux
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