| Commit message (Collapse) | Author | Age | Files | Lines |
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* Add comments to C++ and Fortran API calls that use off_t
* Remove noise casts for small integers
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The H5B (version 1 B-tree) package would add some computationally
expensive integrity checks when H5B_DEBUG was defined. Due to their
negative effects on performance, this option was rarely turned on,
making the H5B__assert() check function stale, if not dead, code.
This change:
* Builds H5B__assert() when NDEBUG is not defined (the function
relies on assert()) so it gets compiled more often.
* Removes some printf debugging statements in the B-tree code
* Removes all H5B "extra debug" checks that are leftover from
past debugging sessions. Maintainers can add H5B__assert()
selectively to perform integrity checks when debugging.
* Removes the HDF5_ENABLE_DEBUG_H5B CMake option
H5B_DEBUG now has no effect
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conversion paths (#4085)
When clearing out datatype conversion paths involving variable-length or reference datatypes
on file close, also check for these datatypes inside compound or array datatypes
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operator (#3306)
Example warning was:
warning: definition of implicit copy assignment operator for 'Group' is deprecated because it has a user-declared destructor [-Wdeprecated-copy-dtor]
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Update long double test with correct values
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* Fixed asserts due to H5Pset_est_link_info() values
If large values for est_num_entries and/or est_name_len were passed
to H5Pset_est_link_info(), the library would attempt to create an
object header NIL message to reserve enough space to hold the links in
compact form (i.e., concatenated), which could exceed allowable object
header message size limits and trip asserts in the library.
This bug only occurred when using the HDF5 1.8 file format or later and
required the product of the two values to be ~64k more than the size
of any links written to the group, which would cause the library to
write out a too-large NIL spacer message to reserve the space for the
unwritten links.
The library now inspects the phase change values to see if the dataset
is likely to be compact and checks the size to ensure any NIL spacer
messages won't be larger than the library allows.
Fixes GitHub #1632
* Fix copy-paste comments
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Fixes issues when VDS examples are tested on BE systems
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The bin/trace script adds TRACE macros to public API calls in the main
C library. This script had a parsing bug that caused functions that
were annotated with /*out*/, etc. to be labeled as void pointers
instead of typed pointers.
This is mainly a developer feature and not visible to consumers
of the public API.
The bin/trace script now annotates public API calls properly.
Fixes GH #3733
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- Close/reopen file and file objects to prevent cache from being used instead of actual I/O.
- Moved vlen io test datasets under the dset container group instead of the root group
- Moved the PASSED() invocation to after individual test cleanup in case an error occurs during H5Treclaim
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secret tokens (#4064)
ros3: increased H5FD_ROS3_MAX_SECRET_TOK_LEN to 4096; stratified the debugging statements so there is more control over the output
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Microsoft has added a new, standards-conformant preprocessor
to MSVC, which can be enabled with /Zc:preprocessor. This
preprocessor trips over our HDopen() function-like variadic
macro since it uses a hack that only works with the legacy
MSVC preprocessor.
This fix adds ifdefs to use the correct HDopen() macro
depending on the MSVC preprocessor selected.
Fixes #2515
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Added Fortran H5E APIs:
h5eregister_class_f, h5eunregister_class_f, h5ecreate_msg_f, h5eclose_msg_f
h5eget_msg_f, h5epush_f, h5eget_num_f, h5ewalk_f, h5eget_class_name_f,
h5eappend_stack_f, h5eget_current_stack_f, h5eset_current_stack_f, h5ecreate_stack_f,
h5eclose_stack_f, h5epop_f, h5eprint_f (C h5eprint v2 signature)
Addresses Issue #3987
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This was due to a complex type fill value being set to -1 instead
of a proper complex value. This was a test problem and not a core
library issue.
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Compound fill values were set to the integer -1, causing valgrind
to flag 'uninitialized bytes' errors.
This is just a problem with the cmpd_dset test and not a core
library problem.
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This was due to not freeing a test buffer. It was not a core
library memory leak.
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* Rename incorrectly named option
* Restore the correct uses of USING_MEMCHECKER
* Update release note
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* Remove user presets file
* Only use C compiler for sanitzers
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H5Tset_fields did not account for any offset in a floating-point datatype,
causing it to fail when a datatype's precision is correctly set such that
it doesn't include the offset bits.
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* Offset of a floating-point type also needs to be accounted for
* Clarify ordering of H5Tset_precision and H5Tset_fields
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VFDs. (#4047)
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Fix link API tests with incorrect filename
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Bumps the github-actions group with 2 updates: [actions/download-artifact](https://github.com/actions/download-artifact) and [github/codeql-action](https://github.com/github/codeql-action).
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Fixes an issue where the HDF5_USE_FILE_LOCKING environment variable being
set can interfere with the file locking setting that the test expects to
be returned.
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This is not used in the library
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There are many architecture-specific linux files in the config
directory, all of which simply redirect to linux-gnulibc1.
This change renames linux-gnulibc1 to linux-gnu and deletes the more
specific files.
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The ibm-aix Autotools config file had some unmaintained and unnecessary
Autoconf cache overrides. These have been removed.
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The Autools Classic Intel compiler configuration attempts to load a file
named `general-19` from the intel-warnings/classic directory, which does
not exist.
This removes the attempted load of the file.
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is used (#4021)
When the H5LT_FILE_IMAGE_DONT_COPY flag is passed to H5LTopen_file_image, the internally-allocated
udata structure gets leaked as the core file driver doesn't have a way to determine when or if it
needs to call the 'udata_free' callback. This has been fixed by freeing the udata structure when
the 'image_free' callback gets made during file close, where the file is holding the last reference
to the udata structure.
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Improve performance of flushing a single object, and remove metadata
cache flush markers
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