| Commit message (Collapse) | Author | Age | Files | Lines |
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declared this function is not included in this file. Windows compiler issued a bad warning that"H5L_link" is not defined but is called.
So add header file "H5Lprivate.h" in H5O.c. Hopefully this is the right way.
Tested on windows and tested the compiling on Linux.
H5L_link is called inside H5O.c but the header file that declared this function is not included in this file. Windows compiler issued a bad warning that"H5L_link" is not defined but is called.
So add header file "H5Lprivate.h" in H5O.c. Hopefully this is the right way.
Tested on windows and tested the compiling on Linux.
H5L_link is called inside H5O.c but the header file that declared this function is not included in this file. Windows compiler issued a bad warning that"H5L_link" is not defined but is called.
So add header file "H5Lprivate.h" in H5O.c. Hopefully this is the right way.
Tested on windows and tested the compiling on Linux.
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Added new refreg_name.c file to test H5Rget_name and H5Iget_name for region references.
H5Rget_name tests are skipped for now since they do not work (at least for me :-)
Platforms tested:
heping and copper
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The version of libtool used by HDF5 isn't directly affected by the reconfigure
script; instead, libtoolize --force must be used by hand. Libtool was the
source of the problem, so rolling its version back to 1.5.14 should solve the
issue (at least temporarily).
Reconfigure should still work on both heping and kagiso.
Tested on heping, kagiso, and tg-login3.
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Fixed formatting issue for the Copyright comment in the file
Platforms tested:
Minor edit; not needed
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Didn't add new example to the list of the C source files; fixed
Platforms tested:
VMS server
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Catching up with more changes from UNIX side.
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Failed to add test program source to the VMS make file; fixed
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Add support for "delete by index" to "old-style" groups, finishing
implmentation of H5Ldelete_by_idx() routine.
Tested on:
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
Aix/32 5.? (copper)
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Finish adding more tests to "delete by index" for compact/dense groups.
Tested on:
Mac OS X/32 10.4.8 (amazon)
FreeBSD/32 4.11 (sleipnir)
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Modified VMS files to reflect recent changes in the code
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More progress toward getting H5Ldelete_by_idx() working - removals on
densely stored links should work now (still needs some more tests). Still
need to write code for removals on "old-style" groups.
Tested on:
FreeBSD/32 4.11 (sleipnir)
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removed whitespace
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h5repack revision:
1. added a new test due to the introduction of H5Ocopy in the copy of objects (compressed dataset with references, that still must go a second sweep of the file to be regenerated).
2. Moved all the source files from the h5repack test program to a new file h5repacktst.c and removed the old ones (testh5repack*.c).
3. Renamed the binary files from test*.h5 to h5repack*.h5 for easy reference.
4. Modified the shell script to use variables for file names instead of hard coded names
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Finish adding "delete by index" feature to v2 B-trees.
Tested on:
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
AIX/32 5.? (copper)
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Checkpoint partially working v2 B-tree delete by index code (ifdef'ed out)
for further work.
Tested on:
Linux/32 2.6 (chicago)
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Hopefully this will fix
issues on tg-login3.
bin/reconfigure should still work on both heping/mir and kagiso.
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More progress toward getting H5Ldelete_by_idx to work fully - can now
delete by index in compact group (but not dense groups or "old-style" groups
yet). Need to go write a v2 B-tree routine to delete from the B-tree by index
before the dense storage will work properly...
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Replace "//" style comment with "/* */" style comment to fix build on
FreeBSD 4.11 (sleipnir)
Tested on:
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
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Finish refactoring internal link deletion code, to make it possible to
wrap up the H5Ldelete_by_idx() coding.
Tested on:
Linxu/32 2.6 (chicago)
Linxu/64 2.6 (chicago2)
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Straighten out some convoluted code when links were being deleted, which
could cause the "delete" callback for user-defined links to not get called when
the group they were in was deleted.
Had to compromise on the "delete" callback though - only calls the callback
with the ID for the file the link is in, instead of the group, since the group
is being held open upstream in the calling sequence during a group deletion and
this prevents a group and its ID from being created. (This could possibly be
worked around, but would cause a fair bit of havoc in the code and I'm not
entirely certain it's worth it...)
Tested on:
Linux/32 2.6 (chicago)
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Oops!
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Clean up warnings from undefined macros...
Tested on:
Linux/64 2.6 (chicago2)
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Missed another reference to h5repack_refs.c file; fixed
Platforms tested
VMS server
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This feature is still in progress; Shared Object Header Messages are not
complete as a feature and are not thoroughly tested. There are still
"TODO" comments in the code (comments with the word "JAMES" in them,
so as not to be confused with other TODO comments).
Hopefully this checkin will reduce the liklihood of conflicts as I finish
implementing this feature.
All current tests pass on juniper, copper (parallel), heping, kagiso, and mir.
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Modified command file to refelect recent UNIX changes.
Platforms treted:
VMS server
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Maintenance for VMS: added new example file to the command files
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Added new file h5_ref2reg.c to MANIFEST
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Added new example for datasets regions; it uses two new functions
H5Iget_name and H5Rget_name to get name of the dataset the region refernce points to.
Platforms tested:
heping
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VMS maintenance: added new source files to the command line
Platforms tested:
Not yet; will do it after this check-in
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Move compact storage routines into separate file, to make room for internal
routines that operate on links within group operations.
Tested on:
Linux/32 2.6 (chicago)
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Add new H5Lget_val_by_idx() routine & tests.
Also includes most of changes for H5Ldelete_by_idx() routine.
Tested on:
Mac OS X/32 10.4.8 (amazon)
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
AIX/32 5.? (copper)
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Add H5Lget_name_by_idx routine & tests
Move more H5G routines to deprecated API file
Tested on:
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) C++ & FORTRAN
Linux/64 2.4 (mir) w/build-all & enable_compat1.6
AIX/32 5.? (copper) w/parallel & FORTRAN
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Fix error with retrieving names of object references on big-endian
platforms.
Tested on:
AIX/32 5.? (copper)
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Add H5Rget_name routine and tests...
Tested on:
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
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Correct typo in a few function name macros.
Tested on:
FreeBSD/32 4.11 (sleipnir)
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Finished implementation of H5Lget_info_by_idx for all cases: old vs. new
group formats, compact vs. dense new link storage, increasing vs. decreasing
vs. native iteration order.
Also, refactor symbol table "foo by index" routines to be more generic
and share more code by using a single B-tree iteration callback which makes
callbacks to a specific "get <foo>" callback.
Tested on:
Mac OS X/32 10.4.8 (amazon)
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
AIX/32 5.? (copper)
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Introduced the second sweep of the file for a case a reference is present and H5Ocopy was not used.
Moved the code from file h5repack_refs.c to h5repack_copy.c and removed the first file
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Should disable linking against shared libraries in Fortran for compilers that
don't support shared libraries.
Should also fix problem when the wrong Fortran file extension was specified.
If these changes don't solve the Daily Test issues, I'll look at backing out
the autotool version change until I have time to fix them.
Tested on heping, kagiso, juniper.
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It seems that the latest version of libtool is linking against shared versions
of the szip libraries in Fortran, rather than the static versions. ifort
doesn't support shared libraries at all.
To solve the problem, we avoid shared libraries entirely unless we're
building shared Fortran libraries ourselves.
If libtool always behaves like this now, it may cause similar problems on
other machines. If you notice that a machine is breaking when it links against
a shared library, let me know.
Tested on kagiso; nothing new is broken. If Albert has time this afternoon
I'll ask him to test on tg-login3 as well.
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condition for H5_HAVE_DIRECT_ALIGN
not defined simply repeated the code above. Merged this part into the code above. No other
significant change.
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h5repack support for H5Ocopy in the copy of objects. The old method
for recreating references was dropped (references recreated in a second
traversal of the file)
The logic for using H5Ocopy or not is
if the input DCPL has filters or non default layout OR these are
requested by the user THEN
use the old h5repack read / write
ELSE
use H5Ocopy
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h5dump bug 701. Symptom: The creation of a hardlink pointing to the root group "/" causes h5dump to display it as a link pointing to itself.
Cure: the root group was not being inserted in the table that keeps track of object names and links.
Added a test for this in the test generation program, the creation of a hardlink to the root
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Linux machines.
Updated to the latest versions of autotools.
Tested on kagiso, heping, and juniper. Let me know if you have any problems.
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of ref.
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Description: Fix some memory-related bugs in the data transform code
Tested:
kagiso w/ valgrind 3.2.1
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Description: Fix a few memory-related bugs in the data transform code.
Tested:
kagiso (for real this time) w/ valgrind 3.2.1
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Flesh out support for looking up link info by index, some cases for using
dense storage are working now.
Tested on:
Linux/32 2.6 (chicago)
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