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* [svn-r19036] Added executable Linker Flag for MSVC static builds: ↵Allen Byrne2010-06-2925-44/+573
| | | | | | | | /NODEFAULTLIB:MSVCRT Added VERSION vars for inclusion into auto snapshot version update script Tested windows
* [svn-r19035] Purpose:Jonathan Kim2010-06-282-1/+36
| | | | | | | | | | | Change h5ls not to manipulate special characters in object name or attribute name for smart display. Description: Merged from hdf5 trunk r19034. Related to "But1784 h5ls has input and output issues with links that have '\' characters in them." Tested: jam, amani
* [svn-r19033] Snapshot version 1.8 release 5 (snap1)HDF Tester2010-06-287-22/+22
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* [svn-r19029] added new cmake files for testingAllen Byrne2010-06-222-2/+4
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* [svn-r19026] Add testing files to cmake resources.Allen Byrne2010-06-223-0/+47
| | | | | | Added code coverage option to cmake. Tested: local linux
* [svn-r19024] Correct defines for zlib and szipAllen Byrne2010-06-211-9/+9
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* [svn-r19023] Snapshot version 1.8 release 5 (snap0)HDF Tester2010-06-217-22/+22
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* [svn-r19020] Enhancements:Albert Cheng2010-06-181-12/+9
| | | | | | | | | | | | | | | | | Cleaned up the code a bit by: 1. It used to that -xxx options must be at the beginning such that "buildhdf5 --disable-shared -config" was an error. Now -xxx options can appear anywhere in the command options. 2. Eliminate the need of variables $CONFIG_CXX, $CONFIG_FORTRAN, $CONFIG_PARALLEL by appending their values to $CONFIG_OP directly. 3. Also append $WITH_SZLIB to $CONFIG_OP when it is defined, not later. 4. Call CONFIG directly instead of setting up $CONFIGURE. 5. Removed the last TIMESTAMP since "trap 0" will call QUIT which calls TIMESTAMP already. This eliminated the extra timestamp when it finishes normal. tested: Tested by hand since h5committest does not really test this command.
* [svn-r19016] Description:Quincey Koziol2010-06-172-16/+15
| | | | | | | | | | | | Bring r19015 from trunk to 1.8 branch: Remove unused 'ATYPE' parameter from H5T_CONV() macro Remove unused 'result' variable from H5AC_set() Tested on: Mac OS X/32 10.6.4 (amazon) w/debug & production (too minor to require h5committest)
* [svn-r19014] Copy the final RELEASE.txt from hdf5_1_8_5 release branch into Mike McGreevy2010-06-171-1/+545
| | | | the HISTORY-1_8.txt file of the 1.8 branch.
* [svn-r19007] Purpose: Improve performance of the the chunk cacheNeil Fortner2010-06-154-226/+185
| | | | | | | | | | Description: Previously, the chunk cache would, when looking for a chunk, alwaylook for the chunk in the b-tree before checking the cache. Reworked the functions that look up chunks to always check the cache first and avoid the b-tree lookup if the chunk is in cache. Tested: jam, linew, amani (h5committest)
* [svn-r19002] Corrected large file optionAllen Byrne2010-06-141-1/+3
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* [svn-r19000] Removed and added files in CMake Resources folderAllen Byrne2010-06-141-1/+3
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* [svn-r18997] Updated config files and install commands per external ↵Allen Byrne2010-06-147-68/+193
| | | | | | developers recommendations. (r18996) Tested: local linux
* [svn-r18991] Bug Fix: (ID 1921)Albert Cheng2010-06-113-36/+38
| | | | | | | | | | | | PHDF5 changed to use "mpiexec", instead of mpirun, as the default MPI applications startup command as defined in the MPI-2 definition, section 4.1. Note that only mpich related (using mpicc command) definitions are changed to mpiexec. Other favors like hcc, AIX, champion, are not changed since I don't have a way to verify them yet. Tested: jam and amani, using both current and new mpich. Did not h5committested since this affects PHDF5 configure only.
* [svn-r18990] Put in the same fix for windows manifested from test/mf.c ↵Vailin Choi2010-06-111-0/+6
| | | | | | failures in the trunk. H5FD_stdio_truncate() windows code: need to do a rewind
* [svn-r18988] Description:Frank Baker2010-06-081-0/+6
| | | | Add acknowledgment of LBNL contractual support.
* [svn-r18986] Test feature: (bugs 1919)Albert Cheng2010-06-084-5/+37
| | | | | | | | | | | | | | | | | Problem: some launching command like yod (and sometimes mpirun), do not pass back the exit code of the executables back to the shell. It always returns 0 if it can launch the executable. This cause tests that expect non-zero exit code to fail incorrectly. Short term Solution: Added the feature that if $RUNSERIAL_NOEXITCODE is defined, do not test conditions that rely on non-zero exit code. Tests: dove-linux using RUNSERIAL=thgyod to see the failures and using $RUNSERIAL_NOEXITCODE=yes to bypass the errors. Also h5committested.
* [svn-r18979] Added comments regarding the -D_POSIX_SOURCE flag including a ↵Larry Knox2010-06-041-1/+12
| | | | | | | | | | reference to a dis cussion of the _POSIX_SOURCE, BSD_SOURCE, and _POSIX_C_SOURCE Macros and their i ntersaction at http://www.gnu.org/s/libc/manual/html_node/Feature-Test-Macros.ht ml. Comment text only - not tested.
* [svn-r18971] Updated with SNL Glory information.Albert Cheng2010-06-041-11/+1
| | | | Removed the retired thunderbird and NCSA Teragrid.
* [svn-r18969] Updated with Red Storm information.Albert Cheng2010-06-041-5/+5
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* [svn-r18967] updated with AIX support information.Albert Cheng2010-06-031-8/+10
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* [svn-r18964] Windows use of VC_EXTRALEAN no longer did anything. It has been ↵Allen Byrne2010-06-035-11/+8
| | | | | | | | replaced by WIN32_LEAN_AND_MEAN macro. This was the cause of a define conflict causing the use of grp1 and grp2 to be replaced with constants in the h5dumpgentest.c file. This also affected the use of the #include <winsock.h> needed by gethostname. The new include: winsock2.h has been added to h5private.h and either removed or updated in the other files. Tested: Windows
* [svn-r18962] Purpose:Mike McGreevy2010-06-032-0/+16
| | | | Add Acknowledgments file to 1.8 branch
* [svn-r18961] Purpose:Jonathan Kim2010-06-031-12/+12
| | | | | | | | | | Fixed Windows compile error. Renamed to use 'gid1' and 'gid2' instead of 'grp1' and 'grp2'. Description: This is related SVN r18946. There is variable name confliction with 'grp1' ~ 'grp9' in Windows system. It occurs if H5private.h is included in the code.
* [svn-r18957] Corrected name of external librariesAllen Byrne2010-06-031-3/+3
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* [svn-r18951] Recorded the change of configure default setting to ↵Albert Cheng2010-06-021-1/+4
| | | | --disable-production.
* [svn-r18949] Corrected where the static *.mod files are installed toAllen Byrne2010-06-021-5/+5
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* [svn-r18948] Purpose:Jonathan Kim2010-06-021-6/+22
| | | | | | | | Update Windows testing for h5ls according to the updates for Support follow symbolic links. Description: Sync with hdf5 1.8 branch SVN r18946
* [svn-r18946] Purpose:Jonathan Kim2010-06-0226-216/+838
| | | | | | | | | | | | | Support follow symbolic links. Description: Merged from hdf5 trunk r18943. Add '--follow-symlinks' option to follow symbolic links (soft and external). Update help page according to RM. Remove some warning messages from compiler. Tested: jam
* [svn-r18945] Added gcc version to cygwin lineAllen Byrne2010-06-021-1/+1
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* [svn-r18939] Removed support for MinGW.Allen Byrne2010-06-012-1/+8
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* [svn-r18937] Update Cygwin and Windows referencesAllen Byrne2010-06-011-11/+13
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* [svn-r18936] Purpose:Mike McGreevy2010-06-011-2/+10
| | | | | Update RELEASE.txt with compiler information and known issues for NCSA Cobalt.
* [svn-r18932] Update Cygwin install instructionsAllen Byrne2010-06-011-21/+14
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* [svn-r18928] New feature:Albert Cheng2010-06-013-12/+79
| | | | | | | | | | Added ibm-flags to display the IBM XL compilers version information so that configure can report them in the configure summary and the libhdf5.settings file. For now, only the C compiler (xlc) versions are displayed. Also moved the C compiler options setting from ibm-aix to ibm-flags. Tested: NCSA Blue-print, both 32 and 64 bit modes.
* [svn-r18927] Description:Quincey Koziol2010-05-314-127/+126
| | | | | | | | Get down to just one "resize_configs_are_equal" comparison routine. Tested on: Mac OS X/32 10.6.3 (amazon) (too minor to require h5committest)
* [svn-r18924] Updated install of fortran mod filesAllen Byrne2010-05-282-8/+30
| | | | Tested: local linux
* [svn-r18923] Changed v1.8 default setting to --disable-production.Albert Cheng2010-05-282-5/+5
| | | | Tested: h5committest plus jam (serial) tested.
* [svn-r18920] Description:Quincey Koziol2010-05-2732-1400/+1120
| | | | | | | | | | | | | | | | | | Bring r18917 from trunk to 1.8 branch: Bring r18911 (plus some adaptions to match the code on the trunk) from the metadata journaling "merging" branch to the trunk: More general changes to align trunk with eventual changes from metadata journaling branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode
* [svn-r18916] Description:Quincey Koziol2010-05-272-24/+28
| | | | | | | | | | Bring r18915 from trunk to 1.8 branch: Clean up a couple of compiler warnings (in Windows). Tested on: Mac OS X/32 10.6.3 (amazon) w/debug (too minor to require h5committest)
* [svn-r18913] Added missing fortran library in list of libraries.Allen Byrne2010-05-271-9/+9
| | | | Tested: Windows, local linux
* [svn-r18907] Corrected name of cstub libraries (needed to be lowercase)Allen Byrne2010-05-261-5/+5
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* [svn-r18905] Updated with new name of CMake.txtAllen Byrne2010-05-261-1/+1
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* [svn-r18902] Renamed Cmake specific document, making more general for all ↵Allen Byrne2010-05-264-93/+113
| | | | platforms. Updated references in other files.
* [svn-r18897] Added fortran /dbglibs option to fortran compile flags for ↵Allen Byrne2010-05-252-1/+11
| | | | | | | | windows intel fortran case. Duplicated windows intel fortran flag block for hl/fortran Tested: windows
* [svn-r18895] Purpose: Improve allocation performance of filtered datasets ↵Neil Fortner2010-05-258-74/+95
| | | | | | | | | | | | | with non-default VL fill values. Description: Previously, H5D_chunk_allocate would, if a dataset were filtered and had a non-default VL fill value, allocate a new buffer for every chunk. Changed H5D_chunk_allocate to reuse the existing buffer if possible. Also other miscellaneous cleanup. Tested: jam, linew, amani (h5committest)
* [svn-r18892] Improvment:Albert Cheng2010-05-258-34/+84
| | | | | | | Revised the online help page of h5dump to explain the packed bits feature and added an example too. Tested: h5committest plus jam tested with --disable-h5dump-packedbits.
* [svn-r18889] Update CMake fortran configure/build with changes from community.Allen Byrne2010-05-255-14/+32
| | | | | | | | - Add an install rule to copy compiled fortran module files - Only build the xlatefile utility if testing and tools are enabled - Don't do MPI HAVE_XXX checks until MPI_FOUND is true - Install needs H5version.h & H5overflow.h to be copied - Add debug information flags to debug compile and link lines for win32 Intel compiler
* [svn-r18886] Add -C {Debug | Release} to ctest command lineAllen Byrne2010-05-241-1/+1
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