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* HDFFV-10760 Skipping external_env.c and vds_env.c for CMake to do VOL check ↵Songyu Lu2019-04-252-0/+4
| | | | and VFD check. Temporarily skipping external_env.c and vds_env.c for VFD check and VOL check in CMake following the example of links_env. Leave them for future work.
* Merge pull request #1672 in HDFFV/hdf5 from ↵Ray Lu2019-04-242-3/+8
|\ | | | | | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/HDFFV-10658-performance-drop-between-1.8-fix4 to develop * commit '562e8ec915c18f14390558399186aba7e3ead9c1': Changing file names and directory names to avoid possible conflict during parallel 'make check'.
| * Changing file names and directory names to avoid possible conflict during ↵Songyu Lu2019-04-232-3/+8
| | | | | | | | parallel 'make check'.
* | Merge pull request #1670 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2019-04-241-0/+2
|\ \ | |/ |/| | | | | * commit '4a4c0bc3972cde177c0a6e2a191b1fa187846c08': Fix issue with H5Iiterate always stopping with an error after the first iteration
| * Fix issue with H5Iiterate always stopping with an error after the first ↵Jordan Henderson2019-04-231-0/+2
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* Merge pull request #1666 in HDFFV/hdf5 from ~KOZIOL/hdf5:unwrap_vol_callback ↵Quincey Koziol2019-04-2310-70/+229
|\ | | | | | | | | | | | | to develop * commit '62198c2436ac3787afb49fa990d1ba8204264dba': Add an 'unwrap' VOL callback, so that connectors can unwrap an underlying object without closing it. (Especially needed for pass-through connectors)
| * Add an 'unwrap' VOL callback, so that connectors can unwrap an underlyingQuincey Koziol2019-04-2110-70/+229
| | | | | | | | object without closing it. (Especially needed for pass-through connectors)
* | Merge pull request #1668 in HDFFV/hdf5 from ↵Ray Lu2019-04-224-23/+27
|\ \ | |/ |/| | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/HDFFV-10658-performance-drop-between-1.8-fix3 to develop * commit '2c47094d4004c916d16667a23efe018db2c0558d': Changing file names to avoid possible conflicts during parallel test.
| * Changing file names to avoid possible conflicts during parallel test.Songyu Lu2019-04-224-23/+27
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* Merge pull request #1665 in HDFFV/hdf5 from ↵Ray Lu2019-04-191-6/+4
|\ | | | | | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/HDFFV-10658-performance-drop-between-1.8-fix2 to develop * commit 'f42b6ace1899bd1e720bbdf4873e6f6e61bee39b': Changing output file names to avoid possible conflict during parallel build and test, especially on jelly.
| * Changing output file names to avoid possible conflict during parallel build ↵Songyu Lu2019-04-191-6/+4
|/ | | | and test, especially on jelly.
* Merge pull request #1663 in HDFFV/hdf5 from ↵Ray Lu2019-04-181-1/+1
|\ | | | | | | | | | | | | ~SONGYULU/hdf5_ray:bugfix/HDFFV-10658-performance-drop-between-1.8_fix to develop * commit 'cd9e9a1b5a20617f885ca6dc686625abb8a79a58': Minor fix: marking an internal function of the test for export.
| * Minor fix: marking an internal function of the test for export.Songyu Lu2019-04-181-1/+1
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* Merge pull request #1654 in HDFFV/hdf5 from ↵Vailin Choi2019-04-182-46/+93
|\ | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-10579-h5arename-function-fails-when to develop * commit '53a5c3be903ce7c24d02a6bd3a8d9b07a3f82404': Change the checking to H5I_INVALID_HID in test_attr_dense_rename(). Fix for HDFFV-10579 H5Arename fails when creation order of attributes is tracked. The attribute needs to be removed from the creation order index v2 B-tree before re-inserting the renamed attribute via H5A__dense_insert().
| * Change the checking to H5I_INVALID_HID in test_attr_dense_rename().Vailin Choi2019-04-161-10/+10
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| * Fix for HDFFV-10579 H5Arename fails when creation order of attributes is ↵Vailin Choi2019-04-122-38/+85
| | | | | | | | | | | | | | tracked. The attribute needs to be removed from the creation order index v2 B-tree before re-inserting the renamed attribute via H5A__dense_insert().
| * Merge pull request #3 in ~VCHOI/my_third_fork from develop to ↵Vailin Choi2019-04-1229-775/+2701
| |\ | | | | | | | | | | | | | | | | | | | | | | | | bugfix/HDFFV-10579-h5arename-function-fails-when * commit '52276f3713eec584044bc72d4724507848cfeba0': Modifications based on PR feedback: (1) Add H5Sdeprec.c to src/CMakeLists.txt (2) Add test for H5Sencode1. Modification for num_elem based on PR feedback. HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change. This also addresses HDFFV-10255: H5Sencode/decode performance issue.
* | \ Merge pull request #1662 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-04-182-21/+33
|\ \ \ | | | | | | | | | | | | | | | | * commit 'cc5f91d1d2b1373fae57afc4e79a530b19343949': Fix CMake errors
| * | | Fix CMake errorsAllen Byrne2019-04-182-21/+33
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* | | Merge pull request #1600 in HDFFV/hdf5 from ↵Ray Lu2019-04-1821-480/+1220
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:HDFFV-10658-performance-drop-from-1-8 to develop * commit 'b5ef82a1786605ae86502bc82086047720b7d4ca': (21 commits) Moving the handling of null prefix into H5_combine_path. Changing the prefix of external file and VDS from empty string to null for performance improvement. Improving the condition checking of empty string. Replacing string operation strdup with assignment for empty string. Adding back links_env.out which I accidentally removed in my previous commit. Taking out two unnecessary diff output files. Taking out unnecessary diff files for output. Adding some comments. Some coding style changes. Adding the standard output files for the external_env.c and vds_env.c tests. Small correction for my previous commit. Forgot to add external_common.c and external_common.h. Updated CMake for the splitting of external.c and vds.c. Minor fix: removal of unnecessary enum values. Minor fixes: updating the test vds_env.c according to the set up of vds.c. Left out this file in previous commit. HDFFV-10658 - setting and getting properties in API context: 1. switched to use the existing H5F_prefix_open_t for enum type; 2. put the common private function used by external.c and external_env.c into external_common.c This commit basically has the following changes: 1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties. 2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables. 3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get. HDFFV-10658: I left out this file in my previous commit. HDFFV-10658: 1. moving HDgetenv to dataset initialization stage to reduce the overhead; 2. restoring the retrieval of three vol properties to H5P_get instead of using API context to prepare for Quincey's upcoming refactoring work. ...
| * | | Moving the handling of null prefix into H5_combine_path.Songyu Lu2019-04-172-17/+7
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| * | | Changing the prefix of external file and VDS from empty string to null for ↵Songyu Lu2019-04-172-25/+30
| | | | | | | | | | | | | | | | performance improvement.
| * | | Improving the condition checking of empty string.Songyu Lu2019-04-171-8/+8
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| * | | Replacing string operation strdup with assignment for empty string.Songyu Lu2019-04-171-11/+18
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| * | | Adding back links_env.out which I accidentally removed in my previous commit.Songyu Lu2019-04-151-0/+3
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| * | | Merge branch 'develop' of ↵Songyu Lu2019-04-1518-1/+471
| |\ \ \ | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| * \ \ \ Merge branch 'HDFFV-10658-performance-drop-from-1-8' of ↵Songyu Lu2019-04-111-8/+0
| |\ \ \ \ | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| | * | | | Taking out two unnecessary diff output files.songyulu2019-04-113-131/+1
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| * | | | | Taking out unnecessary diff files for output.Songyu Lu2019-04-113-126/+1
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| * | | | Adding some comments.Songyu Lu2019-04-111-6/+6
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| * | | | Some coding style changes.Songyu Lu2019-04-116-13/+12
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| * | | | Adding the standard output files for the external_env.c and vds_env.c tests.Songyu Lu2019-04-113-2/+154
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| * | | | Small correction for my previous commit.Songyu Lu2019-04-111-2/+2
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| * | | | Forgot to add external_common.c and external_common.h.Songyu Lu2019-04-101-0/+2
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| * | | | Updated CMake for the splitting of external.c and vds.c.Songyu Lu2019-04-102-0/+108
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| * | | | Minor fix: removal of unnecessary enum values.Songyu Lu2019-04-101-3/+1
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| * | | | Minor fixes: updating the test vds_env.c according to the set up of vds.c.Songyu Lu2019-04-102-8/+48
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| * | | | Merge branch 'develop' of ↵Songyu Lu2019-04-0929-775/+2701
| |\ \ \ \ | | | |_|/ | | |/| | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| * | | | Left out this file in previous commit.Songyu Lu2019-04-091-11/+10
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| * | | | HDFFV-10658 - setting and getting properties in API context:Songyu Lu2019-04-098-52/+75
| | | | | | | | | | | | | | | | | | | | | | | | | 1. switched to use the existing H5F_prefix_open_t for enum type; 2. put the common private function used by external.c and external_env.c into external_common.c
| * | | | Merge branch 'develop' of ↵Songyu Lu2019-04-0847-473/+707
| |\ \ \ \ | | | |_|/ | | |/| | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| * | | | Merge branch 'develop' of ↵Songyu Lu2019-04-04193-1486/+2414
| |\ \ \ \ | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| * | | | | This commit basically has the following changes:Songyu Lu2019-04-0411-438/+848
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties. 2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables. 3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get.
| * | | | | HDFFV-10658: I left out this file in my previous commit.Songyu Lu2019-03-221-5/+6
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| * | | | | HDFFV-10658: 1. moving HDgetenv to dataset initialization stage to reduce ↵Songyu Lu2019-03-225-253/+42
| | | | | | | | | | | | | | | | | | | | | | | | the overhead; 2. restoring the retrieval of three vol properties to H5P_get instead of using API context to prepare for Quincey's upcoming refactoring work.
| * | | | | HDFFV-10658: setting and getting properties in API context:Songyu Lu2019-03-136-42/+391
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1. external file prefix and VDS prefix. 2. the datatype, dataspace, and LCPL of the dataset for VOL connector.
* | | | | | Merge pull request #1659 in HDFFV/hdf5 from ~KOZIOL/hdf5:vds_set_extent_fix ↵Quincey Koziol2019-04-171-1/+1
|\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '659e212e119b4920d2bd41b397cfb0e958817eba': Correct set extent operation on VDS to iterate over # of used sub-datasets instead of # of allocated sub-datasets.
| * | | | | | Correct set extent operation on VDS to iterate over # of used sub-datasetsQuincey Koziol2019-04-161-1/+1
|/ / / / / / | | | | | | | | | | | | | | | | | | instead of # of allocated sub-datasets.
* | | | | | Merge pull request #1658 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-04-1514-308/+322
|\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '2420ea11ad510121cc7553378a6bfa6fd8fdcd05': Remove conflict symbols HDFFV-10741 - remove SKIP_ERRSTK_TESTS option
| * | | | | | Remove conflict symbolsAllen Byrne2019-04-151-4/+0
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