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* [svn-r16357] Description:Quincey Koziol2009-01-2744-262/+873
| | | | | | | | Bring r16307:16347 back from trunk into revise_chunks branch Tested on: FreeBSD/32 6.3 (duty) (h5committest not required on this branch)
* [svn-r16353] Description:Quincey Koziol2009-01-2717-248/+523
| | | | | | | | | | | | | | | | | | | | | | Refactor internal layout information, making it easier to add another type of chunk index. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16311] Description:Quincey Koziol2009-01-1446-350/+3187
| | | | | | | | | | | | | | | | | | | Bring revisions 16280:16307 back from trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16305] Description:Quincey Koziol2009-01-1411-19/+189
| | | | | | | | | | | | | | | | | | | | | | | Add detection of C99 "designated initializers" to configure script and use new H5_HAVE_C99_DESIGNATED_INITIALIZER macro to conditionally compile default layout variables in src/H5Pdcpl.c Also, minor code cleanups, etc. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16283] Description:Quincey Koziol2009-01-0814-284/+1885
| | | | | | | | | | | | | | | | | | | | | Bring revisions 16218:16280 back from trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16278] Description:Quincey Koziol2009-01-0831-494/+582
| | | | | | | | | | | | | | | | | | | | | | | | | Update layout information in DCPL to unify all information in one underlying property and switch to using H5O_layout_t for storing it, which simplifies things considerably. Also, fix many compiler warnings. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16219] Description:Quincey Koziol2008-12-2315-2067/+2319
| | | | | | | Bring revisions 16206:16218 back from trunk Tested on: Mac OS X/32 10.5.6 (amazon)
* [svn-r16206] Creating a branch of hdf5/trunk for working on using new data ↵Quincey Koziol2008-12-181889-147102/+255736
|\ | | | | | | structures for indexing chunks
| * [svn-r16204] Description:Quincey Koziol2008-12-186-258/+302
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Moved v1 B-tree debugging routines into separate module and thinned out header files a bit. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
| * [svn-r16202] Added HDlseek in front of the truncate function in ↵Raymond Lu2008-12-151-1/+7
| | | | | | | | | | | | | | | | | | H5FD_sec2_truncate for VMS only. On Open VMS, if the last read or write put the file pointer beyond the current file size (it happens when an object is deleted), the file can be extended when it's truncated. Tested v1.8 on VMS.
| * [svn-r16196] Description:Scot Breitenfeld2008-12-157-6/+32
| | | | | | | | | | | | | | | | added: !DEC$ATTRIBUTES reference :: for character strings being passed in to C to fix bug in VMS.
| * [svn-r16194] Purpose:Mike McGreevy2008-12-154-31/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix Description: Resolved issues with broken sanity checks that were failing when the 'b2' debugging package was enabled (v2 b-tree debugging): - Fixed outdated assertions that would not compile. They now compile and function correctly. - Removed too far outdated assertions that would require too much unnecessary refactoring of code in order to satisfy their initial purpose. - Re-enabled b2 debugging package when "--enable-debug=all" is specified on the configure line. Tested: jam, smirom, linew
| * [svn-r16189] Changed references of H5Distore to H5Dbtree in project files. ↵Allen Byrne2008-12-124-4/+4
| | | | | | | | (Related to revision 16180)
| * [svn-r16187] Description:Quincey Koziol2008-12-113-4/+4
| | | | | | | | | | | | | | Change a few more "istore" references in comments to "chunk" or "btree". Tested on: None, just comments
| * [svn-r16182] Description:Quincey Koziol2008-12-1115-401/+396
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Rename internal routines, variables, macros, typedefs, etc. for chunked dataset storage from "istore" to some variant of "chunk" or "btree". Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
| * [svn-r16180] Description:Quincey Koziol2008-12-114-6/+6
| | | | | | | | | | | | | | | | | | | | Rename the current chunk indexing routines module for B-tree indices to better reflect their purpose, and to make the upcoming extensible array index module fit in better. Tested: FreeBSD/32 6.3 Too minor to require h5committest
| * [svn-r16179] Description:Quincey Koziol2008-12-111-2/+2
| | | | | | | | | | | | | | | | Use the H5F_KVALUE macro in a couple more places, to make the code easier to read. Tested on: Mac OS X only (very minor)
| * [svn-r16176] Remove terminal whitespace in links.c, H5Lexternal.c, H5Pfapl.cNeil Fortner2008-12-093-29/+29
| | | | | | | | Tested: jam
| * [svn-r16173] Updated fix of the missing argument of open() in zip_perf.c.Albert Cheng2008-12-091-0/+2
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| * [svn-r16170] Code clean up.Albert Cheng2008-12-091-13/+12
| | | | | | | | | | | | | | Function get_unique_name() had potential string overflow problem. Fixed. Also removed some unused macros. Tested by h5committest.
| * [svn-r16167] Bug fix: 1089Albert Cheng2008-12-091-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | Description: One open() call with O_CREAT flag did not have the third required argument. Solution: Added the right third argument. Also changed all open() calls to HDopen macros for more portable coding. Tested: h5committested.
| * [svn-r16166] Description:Frank Baker2008-12-081-6/+6
| | | | | | | | Change all occurrences of 'THG' to 'The HDF Group'.
| * [svn-r16161] Purpose: Add new source file to WindowsScott Wegner2008-12-052-0/+8
| | | | | | | | | | | | | | | | | | | | Description: Recently the new source file H5EAdbkpage.c was added to the main library source code. This checkin also adds it to the Windows project files. Note: Windows builds are still failing on the earray test, although for other reasons. I'm also looking into this. Tested: VS2005 on WinXP
| * [svn-r16158] Test the non deletion of a chunk for the case chunk_offset == ↵Pedro Vicente Nunes2008-12-041-2/+240
| | | | | | | | | | | | dimension by shrinking first, then expanding to original size and compare buffers of initialized values Tested: windows, linux
| * [svn-r16156] close & re-open the file for the test of non-default B-tree ↵Pedro Vicente Nunes2008-12-041-0/+29
| | | | | | | | | | | | | | internal 'K' value (There was a bug where a non-default B-tree internal 'K' value was not being stored in the file) this is a rewrite of the old set_extent.c test program tested: windows, linux
| * [svn-r16152] added comments and removed unnecessary codePedro Vicente Nunes2008-12-021-16/+63
| | | | | | | | tested: windows, linux
| * [svn-r16150] Change a call to H5FL_fac_free to H5FL_FAC_FREE so it works ↵Neil Fortner2008-12-021-1/+1
| | | | | | | | | | | | | | | | correctly when free lists are disabled. Tested: jam
| * [svn-r16148] reorganized the set_extent test to be more modularPedro Vicente Nunes2008-12-021-83/+116
| | | | | | | | tested: windows, linux
| * [svn-r16144] Removed the check of H5Dset_extent for the space to be ↵Pedro Vicente Nunes2008-12-012-4/+12
| | | | | | | | | | | | chunked, since external datasets can be extended Tested: windows, linux
| * [svn-r16143] add a test for recent fixes of H5Dset_extentPedro Vicente Nunes2008-12-011-625/+541
| | | | | | | | tested: windows, linux
| * [svn-r16142] Added a check to H5Dset_extent for the space to be chunked, ↵Pedro Vicente Nunes2008-12-012-19/+11
| | | | | | | | | | | | | | | | exit with error otherwise A call to H5Dset_extent in the external test was removed Tested: windows, linux
| * [svn-r16138] Snapshot version 1.9 release 25HDF Tester2008-11-309-24/+24
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| * [svn-r16137] Description:Quincey Koziol2008-11-2818-145/+1092
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add support for paging large data blocks to extensible arrays Clean up allocation/destroy code for extensible array index, super and data blocks Add a couple of routines to set/get bit values in memory buffers Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
| * [svn-r16133] H5TBdelete_record was not handlong correctly records at the end ↵Pedro Vicente Nunes2008-11-252-56/+90
| | | | | | | | | | | | | | | | of the table added a ckeck that avoids to read these records if they are not needed (for pushing down the table) tested: windows, linux
| * [svn-r16132] some chunks were not deleted for some cases, the comparison to ↵Pedro Vicente Nunes2008-11-251-1/+1
| | | | | | | | | | | | | | | | | | | | check for chunk offsets outside of the new dimensions was chunk_offset[ i ] > dimension [ i ] and it must be chunk_offset[ i ] >= dimension [ i ] tested: windows, linux
| * [svn-r16128] revised test tablePedro Vicente Nunes2008-11-241-1476/+1486
| | | | | | | | tested windows linux
| * [svn-r16125] add mention to Table changePedro Vicente Nunes2008-11-241-0/+2
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| * [svn-r16124] In version 3.0 of Table, "NROWS" was deprecatedPedro Vicente Nunes2008-11-243-2991/+2879
| | | | | | | | tested: windows, linux
| * [svn-r16121] Snapshot version 1.9 release 24HDF Tester2008-11-239-23/+23
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| * [svn-r16119] h5repack: Define a default chunk whose size is manageable. (PVN ↵Pedro Vicente Nunes2008-11-211-0/+2
| | | | | | | | - 2008/11/21)
| * [svn-r16114] remove commented codePedro Vicente Nunes2008-11-211-13/+0
| | | | | | | | tested: windows, linux
| * [svn-r16112] #1375. Define a default chunk whose size is manageable. Defined ↵Pedro Vicente Nunes2008-11-213-13/+55
| | | | | | | | | | | | currently as the same size of hyperslab (that compares the dimension sizes against a predefined constant size and chooses the minimum between the two) Tested : linux, windows
| * [svn-r16110] VMS maintenance: Brought command files up-to-dateElena Pourmal2008-11-192-2/+13
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| * [svn-r16107] Maintenance: Brought up command file up-to-date.Elena Pourmal2008-11-191-7/+7
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| * [svn-r16105] Bug fix: Elena Pourmal2008-11-191-3/+7
| | | | | | | | h5vers script overwrote the value for windows file; fixed
| * [svn-r16100] Maintenance: Library version number in vms/src/h5pubconf.hElena Pourmal2008-11-192-5/+10
| | | | | | | | | | | | | | | | | | was not updated automatically and therefore was always outdated. Modified h5vers script to update the version for the VMS configuration file as we do for the similar windows file. Platforms tested: kagiso with bin/h5vers
| * [svn-r16095] Purpose: Updating bin/reconfigure scriptMike McGreevy2008-11-182-7/+7
| | | | | | | | | | | | | | Updating bin/reconfigure script to point to autotools in /mnt/hdf/packages, since /home1/packages no longer exists. Tested: kagiso
| * [svn-r16094] Description:Quincey Koziol2008-11-186-47/+157
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add initial support for data block 'page init' bitmasks to super blocks. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
| * [svn-r16093] Description:Quincey Koziol2008-11-187-81/+88
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Initial changes to allow data blocks to be paged in, instead of loaded completely. Also, refactored test code to be smaller and more maintainable. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
| * [svn-r16091] Description:Quincey Koziol2008-11-171-9/+9
| | | | | | | | | | | | | | | | | | Switch H5Gcreate -> H5Gcreate2 and H5Gopen -> H5Gopen2, so that they aren't switched with the API compability flags are changed Tested on: Mac OS X/32 10.5.5 (amazon) Linux/64 2.4 (smirom) w/API compability
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