summaryrefslogtreecommitdiffstats
Commit message (Collapse)AuthorAgeFilesLines
* When flushing, the metadata cache attempts to flush entries in increasingmainzer2020-08-0515-1857/+3651
| | | | | | | | | | | | | | | | address order. To facilitate this, the metadata cache needs a list of of dirty entries in increasing address order. This is implemented via a skip list of all dirty entries in the cache. To date this skip list has been maintained at all times. However, profiling indicates that we can avoid significant overhead by constructing the skip list of dirty entries just before a flush, taking it down afterwareds, and not maintaining it during normal operation. This commit implements this optimization for both serial and parallel. Tested serial and parallel, debug and production on charis and jelly.
* Merge pull request #2720 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-07-3111-312/+220
|\ | | | | | | | | | | | | to develop * commit 'c8ba30d965f0342e5725a11cb562dfb22c8a8d24': Minor normalization with 1.10 branch
| * Merge branch 'develop' into develop_minorDana Robinson2020-07-3071-4714/+4091
| |\ | |/ |/|
* | Merge pull request #2718 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-07-3010-134/+126
|\ \ | | | | | | | | | | | | * commit 'ff4a9d0ec2e85cf15f769006e92e756a79869ab8': Warnings reduction in tools
| * | Warnings reduction in toolsAllen Byrne2020-07-3010-134/+126
|/ /
* | Merge pull request #2716 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-07-299-27/+27
|\ \ | | | | | | | | | | | | | | | * commit '6a1cf090c6a2f970084c714a2f75a31d68a0a6a8': Correct reference file Correct h5diff filenames
| * | Correct reference fileAllen Byrne2020-07-291-2/+2
| | |
| * | Correct h5diff filenamesAllen Byrne2020-07-299-29/+29
|/ /
* | Merge pull request #2711 in HDFFV/hdf5 from bmr-HDFFV-11120 to developBinh-Minh Ribler2020-07-292-1/+29
|\ \ | | | | | | | | | | | | | | | | | | | | | Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869) * commit '707e30c6be1954c0027374124207e46caae68cbc': Fixed typos in error messages. Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)
| * | Fixed typos in error messages.Binh-Minh Ribler2020-07-281-3/+3
| | |
| * | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Binh-Minh Ribler2020-07-2223-236/+162
| |\ \ | | | | | | | | | | | | bmr-HDFFV-11120
| * | | Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)Binh-Minh Ribler2020-07-222-1/+29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: When a buffer overflow occurred because a name length was corrupted and became very large, h5dump produced a segfault on one file and a memcpy parameter overlap on another file. This commit added checks that detect a read pass the end of the buffer to prevent these error conditions. Platforms tested: Linux/64 (jelly) SunOS 5.11 (emu)
* | | | Merge pull request #2714 in HDFFV/hdf5 from ↵Dana Robinson2020-07-284-5/+99
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5s_set_extent_none to develop * commit 'e4603ff8a171e82de6373ba6eddcf59d5eeab5aa': Updated the Java tests to deal with H5Sset_extent_none changes Fixed additional typos in tselect.c comments. Fixes typo in tselect.c Updates H5Sset_extent_none() to set H5S_NULL
| * | | | Updated the Java tests to deal with H5Sset_extent_none changesDana Robinson2020-07-281-1/+1
| | | | |
| * | | | Fixed additional typos in tselect.c comments.Dana Robinson2020-07-281-2/+2
| | | | |
| * | | | Fixes typo in tselect.cDana Robinson2020-07-281-1/+1
| | | | |
| * | | | Updates H5Sset_extent_none() to set H5S_NULLDana Robinson2020-07-283-4/+98
| | |/ / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | The API call used to set the internal H5S_NO_CLASS value which produced errors when such a dataspace was passed to many other API calls. Fixes HDFFV-11027
* | | | Merge pull request #2697 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-07-2864-4679/+3942
|\ \ \ \ | |/ / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '5857bb817019b8513f796c9564de3f1845f9a44a': Only one line needed to compare Revert err file revert error-stack enable Add release notes for tools add test file ext Correct file name in test Tools refactor
| * | | Only one line needed to compareAllen Byrne2020-07-271-0/+1
| | | |
| * | | Revert err fileAllen Byrne2020-07-271-8/+0
| | | |
| * | | revert error-stack enableAllen Byrne2020-07-201-1/+1
| | | |
| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-2023-236/+162
| |\ \ \ | |/ / / |/| | | | | | | | | | | * commit '74e09473c825610d203565e5ed9deb156256d6ea': Minor normalization with 1.10.
| * | | Add release notes for toolsAllen Byrne2020-07-201-2/+38
| | | |
| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-178-1/+200
| |\ \ \ | | |/ / | | | | | | | | | | | | | | | | * commit '9d3ea366d4bf3278e8260f4d5cdcc88cb4b61c56': Update MANIFEST. Add new test to Cmake. Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
| * | | add test file extAllen Byrne2020-07-172-4/+4
| | | |
| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-174-31/+30
| |\ \ \ | | | | | | | | | | | | | | | | | | | | * commit 'e36047b9b9839d1fd0b4009b7066b8b50b95bc6d': Minor normalization with 1.10
| * \ \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-164-25/+336
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit '58d37c2295044ad1a201d6671cdd67ae380b84f8': H5R: fix type conversion of references within vlen type
| * | | | | Correct file name in testAllen Byrne2020-07-161-1/+1
| | | | | |
| * | | | | Tools refactorAllen Byrne2020-07-1560-4667/+3901
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Move error_stack setup to tools library Add structure for h5dump properties Eliminate duplicated h5diff functions Use properties structure in place of argument lists.
| * | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-142-29/+8
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '806f5b5b2a280072f62f58c48e93acdc84f2b3ae': Removed POSIX #defines from configure on Solaris. Fallback to older time functions in new timer code.
| * \ \ \ \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-117-5/+94
| |\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'b480d0a38b1e265c55c74262bf384d255a33e07b': Remove path to szip header file from AM_CPPFLAGS when configure check of libsz fails. Fix for HDFFV-10830. HDFFV-11116 Add option for install location of Fortran MOD files
| * \ \ \ \ \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-0921-1074/+1055
| |\ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'f5da9b1befeb81aa9f4d97df3ec606f801807420': Minor changes from normalization with 1.10
| | | | | | | | * Minor normalization with 1.10 branchDana Robinson2020-07-2711-312/+220
| |_|_|_|_|_|_|/ |/| | | | | | |
* | | | | | | | Merge pull request #2703 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-07-2023-236/+162
|\ \ \ \ \ \ \ \ | |_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '242459231b40a88741cbc85df4272914b5d8bed3': Minor normalization with 1.10.
| * | | | | | | Minor normalization with 1.10.Dana Robinson2020-07-2023-236/+162
| | | | | | | |
* | | | | | | | Merge pull request #2693 in HDFFV/hdf5 from ↵Vailin Choi2020-07-178-1/+200
|\ \ \ \ \ \ \ \ | |_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop * commit '3023b34272cc6ada84aebfa7441a6a55afa3621c': Update MANIFEST. Add new test to Cmake. Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
| * | | | | | | Update MANIFEST.vchoi2020-07-162-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add new test to Cmake.
| * | | | | | | Fix for jira issue HDFFV-11080:vchoi2020-07-146-1/+198
| | |_|_|/ / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
* | | | | | | Merge pull request #2700 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-07-174-31/+30
|\ \ \ \ \ \ \ | | |/ / / / / | |/| | | | / | |_|_|_|_|/ |/| | | | | | | | | | | | | | | | | to develop * commit '6388a6750ff1dc476b8631d26cd1742730df9fe8': Minor normalization with 1.10
| * | | | | Minor normalization with 1.10Dana Robinson2020-07-174-31/+30
|/ / / / /
* | | | | Merge pull request #2694 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:fix_vlen_ref to ↵Jerome Soumagne2020-07-164-25/+336
|\ \ \ \ \ | |_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | develop * commit 'aa9d2bd9bcce7a1a53c9d9cf519df5401041bb74': H5R: fix type conversion of references within vlen type
| * | | | H5R: fix type conversion of references within vlen typeJerome Soumagne2020-07-164-25/+336
|/ / / / | | | | | | | | | | | | Update trefer.c with vlen test case
* | | | Merge pull request #2692 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-07-142-29/+8
|\ \ \ \ | |/ / / |/| | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'b8013380792a3503003f0a2bd60d7541656b03c7': Removed POSIX #defines from configure on Solaris. Fallback to older time functions in new timer code.
| * | | Removed POSIX #defines from configure on Solaris.Dana Robinson2020-07-141-6/+0
| | | |
| * | | Fallback to older time functions in new timer code.Dana Robinson2020-07-141-23/+8
|/ / /
* | | Merge pull request #2686 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-07-111-1/+4
|\ \ \ | | | | | | | | | | | | | | | | * commit '800f93f7c994f88dfa716746153ded4b1e690e3a': Remove path to szip header file from AM_CPPFLAGS when configure check of libsz fails. Fix for HDFFV-10830.
| * \ \ Merge branch 'develop' of ↵Larry Knox2020-07-1023-1079/+1078
| |\ \ \ | | | |/ | | |/| | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop
| * | | Remove path to szip header file from AM_CPPFLAGS when configure check of ↵Larry Knox2020-07-101-1/+4
| | | | | | | | | | | | | | | | | | | | | | | | libsz fails. Fix for HDFFV-10830.
* | | | Merge pull request #2684 in HDFFV/hdf5 from ↵Allen Byrne2020-07-116-4/+90
|\ \ \ \ | |_|/ / |/| | | | | | | | | | | | | | | | | | | ~BYRN/hdf5_adb:feature/HDFFV-11116-trilabs-mod-location to develop * commit '07a52ecb2ffa1d8d32f06db23470833899db3deb': HDFFV-11116 Add option for install location of Fortran MOD files
| * | | HDFFV-11116 Add option for install location of Fortran MOD filesAllen Byrne2020-07-096-4/+90
| | |/ | |/|
generated by cgit v0.12 at 2024-08-29 18:46:18 (GMT)