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* [svn-r26857] Bugs:Albert Cheng2015-04-211-3/+5
| | | | | | | | | | The configure summary (libhdf5.settings) was missing from the configure output. Solution: Append the configure summary to the configure logfile if configure succeeds. Tested: hand ran cmakehdf5 in jam and inspected the logfile.
* [svn-r26852] Correct component matchingAllen Byrne2015-04-201-11/+9
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* [svn-r26848] Fix warnings in H5TJerome Soumagne2015-04-201-31/+115
| | | | Tested: local linux
* [svn-r26843] Description:Quincey Koziol2015-04-194-6/+30
| | | | | | | | Minor code & warning cleanups. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel Linux/32 2.6.18 (jam) w/serial & parallel
* [svn-r26842] Description:Quincey Koziol2015-04-1810-123/+131
| | | | | | | | | | Cache the dataset's rank & dimension sizes, instead of querying them frequently, to speed up various checks & algorithms. Also, a few minor cleanups. Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel Linux/32 2.6.18 (jam) w/serial & parallel
* [svn-r26841] Description:Quincey Koziol2015-04-184-7/+5
| | | | | | | | Minor formatting cleanups and remove unused field from callback struct. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r26840] configureLarry Knox2015-04-178-78/+174
| | | | | | | | | | | | | | | | | | configure.ac hl/src/H5LTparse.c hl/src/H5LTparse.h Address HDFFV-9010: configure issue with gcc 4.9.2 "-l ". Change default to disable_shared on CYGWIN. release_docs/INSTALL_Cygwin.txt release_docs/RELEASE.txt Update for changed default and no CYGWIN szip binary. c++/src/cpp_doc_config bin/h5vers AddressHDFFV-9010: Add cpp_doc_config to h5vers Tested with h5committest, on CYGWIN.
* [svn-r26837] Description:Quincey Koziol2015-04-176-341/+490
| | | | | | | | | | Separate allocating chunk on disk from inserting the chunk record into the index. This allows a "SWMR-safe" insert/update of chunks (the chunk is always allocated -> written -> inserted/updated in the index). Tested on: Mac OSX/64 10.10.2 (amazon) w/parallel & serial Linux/32 2.6.18 (jam) w/serial & parallel
* [svn-r26823] Update instruction that changes in this releaes that " ↵Albert Cheng2015-04-161-5/+4
| | | | | | | --enable-parallel has to be used explicitly to build parallel HDF5 regardless of the compiler type being used. (MSC - 2015/02/19 HDFFV-9068)"
* [svn-r26815] Update cmake configuration checksAllen Byrne2015-04-153-75/+1
| | | | Tested: local linux
* [svn-r26812] Removed printf debugging statements.Scot Breitenfeld2015-04-151-2/+0
| | | | Tested: trival.
* [svn-r26803] Fixed a minor typo in H5R code comment.Dana Robinson2015-04-141-1/+1
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* [svn-r26786] In libhdf5.settings.in, changed the C++ shared library setting ↵Dana Robinson2015-04-131-1/+1
| | | | | | | | variable from H5_CXX_SHARED (which no longer exists) to enable_static. Tested on: jam (configure only - minor change)
* [svn-r26785] Snapshot version 1.9 release 216HDF Tester2015-04-1212-23/+23
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* [svn-r26782] Remove md5 from METHODS arguments for calling bin/release ↵Larry Knox2015-04-121-2/+2
| | | | script from snapshot script. md5 method was removed and md5 checksums are always produced for all compression methods.
* [svn-r26778] fix path to configAllen Byrne2015-04-101-2/+2
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* [svn-r26777] - Fix usage of the internal AC global dxplsMohamad Chaarawi2015-04-1018-250/+259
| | | | | | - allocate sieve buffer with calloc instead of malloc tested with h5committest
* [svn-r26776] Add missing quote char.Allen Byrne2015-04-101-1/+1
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* [svn-r26772] Fixed wrong fapl for H5Fopen when testing H5Iget_name with ↵Scot Breitenfeld2015-04-091-1/+1
| | | | | | anonymously created datatype. Tested: jam (using split virtual driver)
* [svn-r26771] - remove unused internal dxpl properties and property lists ↵Mohamad Chaarawi2015-04-082-111/+30
| | | | | | | | from the AC layer - fix warnings in H5AC.c tested with h5committest
* [svn-r26767] Added test to address HDFFV-3065:Scot Breitenfeld2015-04-081-2/+57
| | | | | | H5Iget_name on datatype that is not named returns no error Tested: h5committest
* [svn-r26757] Description:Quincey Koziol2015-04-077-79/+64
| | | | | | | | Minor typos & code cleanups Tested on: MacOSX/64 10.10.2 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r26751] Updated.Albert Cheng2015-04-071-1/+0
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* [svn-r26750] HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in ↵Albert Cheng2015-04-078-25759/+14
| | | | | | | | | compound type. Added the testing to h5repack where it belongs. Undo the tests added to h5dump. Tested: h5committested plus tested in jam by hand.
* [svn-r26746] install_parallel updates.Mohamad Chaarawi2015-04-071-118/+1
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* [svn-r26737] Purpose: Fix daily test failureBinh-Minh Ribler2015-04-063-8/+14
| | | | | | | | | | | | | | Description: - In DataType::DataType(const PredType& pred_type), using DataType::copy will invoke DataType::close() unnecessarily, which will produce undefined behavior. Changed to call H5Tcopy directly, code reuse is not useful in this case. - Also, fixed CommonFG::childObjVersion to return expected value outside of an if/else block. Platforms tested: Linux/ppc64 (ostrich) Linux/64 (platypus) Linux/32 2.6 (jam)
* [svn-r26721] Disable failing testAllen Byrne2015-04-031-1/+1
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* [svn-r26719] Add HL to default componentsAllen Byrne2015-04-031-1/+1
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* [svn-r26712] Bug fix: cmakehdf5 broken because zlib is no longer configure ↵Albert Cheng2015-04-021-0/+11
| | | | | | | | | | | | | | in by default. That broke the testings as some testfiles have zlib compressed datasets. Added options control to enable the linking of zlib external libarary by default and turn off the szip library linking as szip library may not be avaiable. This matches the established settings. Tested: run cmakehdf5 by hand in jam and platypus. Also tested in wren but it failed in the testing stage. Also tried "cmakehdf5 --script" in jam. It failed.
* [svn-r26711] Recommitting revisions 26669 and 26670, removing VPATH and ↵Larry Knox2015-04-0247-204/+6
| | | | | | | | redundant /usr/include and lib in fcompile and link flags checks, now that I have run reconfigure. Also changed paths to h5cc, etc. in scripts to run installed examples from relative paths to absolute paths. Tested with h5committest.
* [svn-r26702] HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in ↵Albert Cheng2015-04-011-3/+16
| | | | | | | | | | | | | compound type. Description: The test added failed in some machines because the data file contains infinity values that different machines print them differently as "inf", "INF", "Inf", ... Solution: Added a "ignorecase" option to TOOLTEST() to do caseless matching between generated output vs expected output. This solved most machines problem for now. Tested: h5committest, emu by hand for both development and production modes. But cmake built h5dump failed to read the data file. Using the same source to build h5dump by autotools produced a h5dump that can read the test data file. Don't know why cmake could not produce a correct binary.
* [svn-r26699] Generators are only built staticAllen Byrne2015-04-0110-21/+21
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* [svn-r26695] Purpose: Fixed HDFFV-7947 (cont.)Binh-Minh Ribler2015-04-018-29/+9
| | | | | | | | | | | | Description: - Put back the UNUSED parameters in dsets test because the change to remove the warning last time caused failure in setting filter, in turn, caused failure in the test with such obscure/unrelated errors! - Added incRefCount() to other constructors that missed from last time. Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r26693] Remove use of obsolete HDF5_USE_FILTER_{internal}Allen Byrne2015-04-013-98/+22
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* [svn-r26691] Move attribute define out of dynamic block.Allen Byrne2015-04-011-3/+3
| | | | Tested: windows
* [svn-r26690] Fix error in H5Sextent_copyNeil Fortner2015-04-012-0/+34
| | | | | | | | When the selection is set to all, H5Sextent_copy did not update the number of elements in the selection in the destination space. Fixed H5Sextent_copy to do this. Added tests for this functionality. Tested: jam, koala, ostrich (h5committest)
* [svn-r26685] Add new test from test scriptAllen Byrne2015-03-311-1/+19
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* [svn-r26683] Remove internal filter checksAllen Byrne2015-03-312-33/+17
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* [svn-r26682] Add new test from test scriptAllen Byrne2015-03-311-0/+3
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* [svn-r26678] add ifdef checks and setting for __attribute__ in a public ↵Mohamad Chaarawi2015-03-313-6/+10
| | | | | | place to allow usage in public routines.
* [svn-r26677] HDFFV-8957: h52gif crashes when run against one of our own ↵Albert Cheng2015-03-316-1/+25760
| | | | | | | | | | | | | | | | examples The tool claimed it could handle 24bit images but there was no code to handle it. (or might be there were but was removed by previous revisions.) Also discovered that it does not accept multiple images nor -p for palette as its user document and online help message indicated. Solution: Added code to verify dimension sizes are within 8 bit raster images limit and added tests to verify the tools correctness. Need to update user document tool. Tested: h5committested.
* [svn-r26675] HDFFV-9201: Create md5s for bzip, gzip and zip filesAlbert Cheng2015-03-311-11/+15
| | | | | | An md5 checksum is produced for each archive created and stored in the md5 file Tested: jam by hand.
* [svn-r26671] Since cmake always redoes everything from start, I change the ↵Albert Cheng2015-03-311-1/+1
| | | | | | | | logfiles to start fresh everytime. Tested: platypus
* [svn-r26670] Remove VPATH and LONE_COLONLarry Knox2015-03-313-120/+1
| | | | Tested with h5committest
* [svn-r26669] Remove code to prevent duplicate includes of /usr/include and ↵Larry Knox2015-03-301-45/+0
| | | | | | /usr/lib. Tested h5committest
* [svn-r26667] Purpose: Fixed HDFFV-8766Binh-Minh Ribler2015-03-303-0/+56
| | | | | | | | | | | | Description: Per user Jason Newton request, the following constructor is added: H5File(hid_t existing_id); Also, fixed H5File::openFile to close current file first before re-using the object. Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam gnu and Intel 15.0) SunOS 5.11 (emu)
* [svn-r26665] Description:Frank Baker2015-03-301-1/+1
| | | | Update HDF Group copyright dates to include 2015.
* [svn-r26662] added option to configure support for fortran2003 API.Albert Cheng2015-03-301-1/+12
| | | | | | | --enable-fortran2003 | --disable-fortran2003: enable or disable fortran2003 API. Default is off. Tested: by hand in platypus.
* [svn-r26660] HDFFV-9131: autotols reworkAllen Byrne2015-03-3046-643/+58
| | | | | | | Remove CXX_CONDITIONAL remove unneeded/obsolete sections. h5commtitest
* [svn-r26657] Fix for HDFFV09202.Scot Breitenfeld2015-03-302-6/+21
| | | | | | | HDFFV-9202 subroutine VERIFY() fails when checking 8 byte integers in fortran tests Tested: jam( --enable-fortran2003, gnu) koala (--enable-fortran2003, intel)
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