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* [svn-r9988] Purpose:James Laird2005-02-1156-724/+367
| | | | | | | | | | | | | | | | | | | | Bug fix Description: pmake (on modi4, for instance) complains about undefined variables if it is run without the -V flag, which turns those errors to warnings. Solution: Added test to configure.in to see if $MAKE will allow Makefiles with undefined variables. If not, sets -V flag in AM_MAKEFLAGS. Ensured that all custom make targets use AM_MAKEFLAGS. Also defined all variables that caused errors in top-level Makefile.am. This means that pmake can be used to build hdf5 *from the top level only*. To run make from a subdirectory, still need to use -V flag (or use make or gmake). Platforms tested: modi4, heping, copper, sleipnir
* [svn-r9987] Purpose: bug fixRaymond Lu2005-02-111-6/+10
| | | | | | | | | | | Description: For hardware conversion from integers to "long double" on AMD machine, the test failed because the size of "long double"(can be 16 bytes) is bigger than the precision(80 bits). There can be some garbage in the unused bytes in "long double". That caused failure during byte comparison. Solution: Clean these unused bytes before comparison. Platforms tested: mir and fuss; simple change
* [svn-r9986] Purpose:Quincey Koziol2005-02-116-82/+619
| | | | | | | | | | | | | | | | | | | New feature & code cleanup Description: Change some references from 'keys' to 'records', which is more correct for this implementation. Added feature to allow preemptive 3 node record redistributions (for leaves only currently) Added feature to perform preemptive 3->4 node splits (for leaves only currently) Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Solaris 2.9 (shanti) w/purify Too minor to require h5committest
* [svn-r9985] Purpose:Quincey Koziol2005-02-112-22/+333
| | | | | | | | | | | | | | | | | New feature & bug fixes Description: Checkpoint v2 B-tree code after getting preemptive 2->3 node splitting working (for leaf nodes only at the moment, however). Also, correct a problem with redistributing records that was probably causing the failures on mir in yesterday's daily tests. Ran code through purify on shanti and cleared up some warnings. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Solaris 2.9 (shanti) w/purify
* [svn-r9984] Purpose: New feature and testRaymond Lu2005-02-106-83/+863
| | | | | | | | | | Description: Added support of hardware conversion between "long double" and integers(mainly in H5Tconv.c) and some test cases(mainly in test/dtypes.c). Platforms tested: h5committest and fuss. Misc. update: RELEASE.txt
* [svn-r9983] Purpose: New FeatureRaymond Lu2005-02-101-0/+2
| | | | | | | | | | Description: Support of hardware conversion between "long double" and integers(mainly in H5Tconv.c) and test cases for it(mainly in dtypes.c) Platforms tested: h5committest and fuss Misc. update: RELEASE.txt
* [svn-r9982] Purpose:Xiaowen Wu2005-02-101-136/+152
| | | | | | | | | | | | | | | | bug fix plus minor modifications Description: The nbit filter makes a wrong assumption that function H5Z_set_local_nbit and H5Z_filter_nbit will be called together. It uses 2 local variables outside these functions to pass information from H5Z_set_local_nbit to H5Z_filter_nbit. Solution: Store the two variables in cd_values[], which can be retrieved when H5Z_filter_nbit is called independently. Platforms tested: heping, copper Misc. update:
* [svn-r9981] Purpose:Quincey Koziol2005-02-102-0/+7
| | | | | | | | | | | Code cleanup Description: Clean up some test files. Platforms tested: FreeBSD 4.11 (sleipnir) w/FORTRAN Too minor to require h5committest
* [svn-r9980] Purpose:Albert Cheng2005-02-101-6/+2
| | | | | | | | | | | | | | | | bug fix. Description: Need eval before the RUNCMD command because some machines like AIX, has RUNPARALLEL in the style as MP_PROCS=3 MP_TASKS_PER_NODE=3 poe ./a.out that throws the shell script off. Platforms tested: Tested in copper (pp) where it failed before. Tested in heping pp too. Misc. update:
* [svn-r9979] Purpose:Albert Cheng2005-02-101-1/+0
| | | | | | | | | | | | | | | | Bug fixed. Description: Heping used to have a network limit that if too many rsh connections occurred in a second, it stopped accepting connections for 30 seconds. That caused testph5diff to fail when too many mpi jobs are executed repidly. A sleep 2 was in to go around this problem. Heping's limit has been raised, thus no more need for this hack. Sleep 2 is removed. Platforms tested: Tested in heping (pp). Misc. update:
* [svn-r9978] Purpose:Xuan Bai2005-02-101-16/+16
| | | | | | | | | | | | | | | | | | | Bug fix. Description: Quincey changed "entern H5_DLL" to "H5_DLLVAR" in hdf5/src/H5FLprivate.h which caused some symbols can not be exported correctly by HDF5 DLL. Solution: Change "H5_DLLVAR" back to "extern H5_DLL". Platforms tested: Visual C++ 6.0 on Windows XP. .NET 2003 on Windows XP. Heping (Linux 2.4). (Note: I talked with Elena and Quincey about this failure. Quincey asked me to check in this fix.) Misc. update:
* [svn-r9977] Purpose:Quincey Koziol2005-02-102-34/+93
| | | | | | | | | | | | | | Update port Description: Allow FreeBSD builds to use Intel C & F90 compilers (C++ is not working yet on FreeBSD, so that'll come along later) Platforms tested: FreeBSD 4.11 (sleipnir) w/Intel C & F90 compilers Does not affect other platforms... Misc. update:
* [svn-r9976] Purpose:Xuan Bai2005-02-101-0/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | New feature and update. Description: 1. New feature: link HDF5 with Zlib 1.2.2 and Szip 2.0 DLL libraries. 2. Update: catch up HDF5 update during past weeks. Solution: 1. New feature: As now HDF5 only links with Zlib and Szip DLL libraries, only 2 environment variables are needed: Environment Variables for HDF5 on Windows Previously Now HDF5_EXT_ZLIB zlib.lib zdll.lib HDF5_EXT_SZIP szlib.lib szlibdll.lib HDF5_EXT_ZLIB_DLL c:\zlib114\dll\zlib.lib N/A HDF5_EXT_SZIP_DLL szlibdll.lib N/A Due to the above change, the following changes are made: a. hdf_dll and dsets_dll were linked with HDF5_EXT_ZLIB_DLL and HDF5_EXT_SZIP_DLL before this update. Now they are linked with HDF5_EXT_ZLIB and HDF5_EXT_SZIP. b. In hdf5/tools/dumptest.bat and repacktest.bat, HDF5_EXT_ZLIB was compared with zlib.lib and HDF5_EXT_SZIP was compared with szlib.lib to find out whether ZLIB or SZIP libraries were presented. Now HDF5_EXT_ZLIB is compared with zdll.lib and HDF5_EXT_SZIP with szlibdll.lib. 2. Update (due to change in source codes) a. Add hdf5/src/H5B2.c, H5B2cache.c, H5B2dbg.c, H5B2test.c, H5b2pkg.h, H5B2private.h, and H5B2public.h to projects hdf5 and hdf5dll. b. Replace H5TA.c and H5TA.h with H5TB.c and H5TB.h in hdf5_hl project. Platforms tested: Visual C++ 6.0/DEC Fortran 6.6c on Windows XP. .NET on Windows XP. Misc. update: installation file was updated also.
* [svn-r9974] Purpose:Xuan Bai2005-02-091-147/+53
| | | | | | | | | | | | | Update. Description: Update installation file on how to link HDF5 with Zlib 1.2.2 and Szip 2.0 DLL libraries. Solution: Platforms tested: Misc. update:
* [svn-r9971] Purpose:Quincey Koziol2005-02-098-806/+900
| | | | | | | | | | | | New feature Description: Checkpoint v2 B-tree code after getting 2 leaf record redistribution working and tested. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9970] Purpose:Quincey Koziol2005-02-091-4/+4
| | | | | | | | | | | | | | | Bug fix Description: Correct formatting error which would run some macros together if the length of the error got too large. Solution: Throw in some extra whitespace Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9969] Purpose:Leon Arber2005-02-094-5/+12
| | | | | | | | | | | | | | | | | | | Correction to previous print_manager_output bugfix Description: Although the previous bugfix did fix all the errors, it was not the correct way to fix the problem. Since the manager will only buffer output when run in parallel mode, in serial mode this function should not even be called. Solution: Wrapped print_manager_output in #define's to prevent it from being included in serial builds. Platforms tested: heping (serial + parallel) Misc. update:
* [svn-r9968] Pedro Vicente Nunes2005-02-091-7/+7
| | | | | | | | | | | | | | | | | | | | | | Purpose: bug fix Description: a string with 2 characters was declared as having size 2. changed to size 3 (+ null character) this was causing compiler warnings with g++ Solution: Platforms tested: linux free bsd (g++) Misc. update:
* [svn-r9966] Purpose: Bug fixRaymond Lu2005-02-094-28/+97
| | | | | | | | | | | | | Description: H5Tget_member_value didn't return correct value if called after H5Tenum_valueof. It's because there's a sorting on the members of enum type in H5Tenum_valueof which changed the order of members. Solution: Made a copy of original type and do sorting on it to protect the original order. Platforms tested: fuss; tested v1.6 with h5committest Misc. update: RELEASE.txt
* [svn-r9964] Purpose:Albert Cheng2005-02-091-0/+4
| | | | | | | | | | | | | | bug fix Description: g++ was not happy with missing protocols of external functions. Added print_manager_output(void) and phdiff_dismiss_workers(void) to the public declarations. Platforms tested: Tested in sleipnir (g++) and heping (serial, pp) Misc. update:
* [svn-r9962] Purpose:Quincey Koziol2005-02-083-2/+289
| | | | | | | | | | | | | | | Bug fix & code update Description: Fix error in new free-list factory routines that was causing errors on tungsten, et al. Also, checkpoint v2 B-tree code. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Linux 2.4 (tungsten) Otherwise too minor to require h5committest
* [svn-r9961] Pedro Vicente Nunes2005-02-089-9/+198
| | | | | | | | | | | | | | | | | | | | | | | Purpose: bug fix, new test file Description: h5dump was not properly displaying array indices > 3D Solution: added the same algorythm and data structure that h5diff uses to calculate the array index from a element number position Platforms tested: linux solaris Misc. update:
* [svn-r9959] Purpose: Bug fixRaymond Lu2005-02-087-34/+152
| | | | | | | | | | | | Description: For variable-length string, H5Tget_class returned H5T_STRING as its class. But H5Tdetect_class and H5Tget_member_class considered it as H5T_VLEN. This is fixed to let all these 3 functions treat it as H5T_STRING. Some test cases have been added to dtypes.c Platforms tested: heping - already tested for v1.6 with h5committest Misc. update: RELEASE.txt
* [svn-r9957] Purpose:Albert Cheng2005-02-081-2/+2
| | | | | | | | | | | | | | | | | | Bug fix. Description: print_manager_output was missing because it was compiled in only parallel mode. Solution: Made it available all the times. Platforms tested: h5committested. (testph5diff.sh failed in copper but that is a different error.) Also tested in heping, serial and pp. Misc. update:
* [svn-r9956] Purpose:Leon Arber2005-02-087-471/+533
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fixed numerous ph5diff bugs. Description: Fixed manager output printing Fixed out of order output printing Fixed test script execution problem Temporary fix for large amounts of output overflowing buffer. Solution: The manager task buffers its output. However, since the manager task never gets a print token, this output was lost. Solution: new function called print_manager_output that prints buffered output is called in places where the manager buffers its output. printf was apparently buffering output. This means that a task would sometimes print even after it had given up its print token. Added fflush() call after printf() calls, which seems to have fixed the problem. calling rsh multiple times in succession seems to overwhelm something in Linux, as it begins to refuse new connections until the old ones reset. Since each call to mpirun in the test script starts up 4 rsh sessions, the test script eventually is unable to run any further tests. Solution: Added a short delay in the testscript between successive calls to mpirun to allow old connections to reset. The 10k output buffer was of insufficient size to hold the large amounts of output generated by some of the tests. Since code to buffer to a file has not been implemented yet, a temporary fix was to increase the size of the output buffer to 50k. Platforms tested: heping Misc. update:
* [svn-r9955] Purpose:Quincey Koziol2005-02-0813-222/+610
| | | | | | | | | | | | | | New feature & bug fix Description: Allow h5debug tool to dump "test" v2 B-trees correctly. Also, fix incorrect parameter passing that was causing failures on various platforms. Platforms tested: FreeBSD 4.11 (sleipnir) AIX 5.2 (copper)
* [svn-r9952] Purpose:James Laird2005-02-072-2/+2
| | | | | | | | | | | | | | | | | Bug fix Description: Typo in /hl/fortran/src Makefile.am caused obtuse compiler complaints from some compilers (but not others). Errors were of the form: gcc: cannot specify -o with -c or -S and multiple compilations Solution: In AM_CLFAGS, missed -I before ../../hl/src. This made gcc think that we also wanted to compile /hl/src directory. Fixed error by adding -I. Platforms tested: verbena, eirene.
* [svn-r9951] Purpose: Minor bug fix.Raymond Lu2005-02-074-21/+68
| | | | | | | | | | | | | Description: The byte order for all 1-byte integer types was fixed as little-endian even on a big-endian machine. This's corrected in h5detect.c. When types are only 1 byte long, a native int is used substitute the type to detect byte order. Some tools like h5dump and h5repack are also corrected in this case. Platforms tested: fuss, copper, sol.(There're some failures from the recent configure change). Misc. update: Information in the RELEASE.txt.
* [svn-r9950] James Laird2005-02-072-4/+2
| | | | | | | | | | | | | | Purpose: Bug fix Description: Make uninstall in /fortran/testpar was trying to remove install/bin directory. Solution: Remove the extra line that was copy-pasted into Makefile.am by mistake. Oops. Platforms tested: Copper.
* [svn-r9949] Purpose:Albert Cheng2005-02-071-63/+122
| | | | | | | | | | | | | | | | | Bug fix Description: h5diff sometimes will 'exit(status)' but if it is in parallel mode, it needs to close up the workers and the MPI environment before exit(..). Solution: Created h5diff_exit() that will just exit in serial mode but does all the shutdown properly if in parallel mode. Platforms tested: tested in heping, serial and parallel. Misc. update:
* [svn-r9947] Purpose:Albert Cheng2005-02-061-0/+24
| | | | | | | | | | | | | Feature Description: Added a new function, phdiff_dismiss_workers, which tells the phdiff worker processes to end. Platforms tested: Tested in heping, serial and parallel. Misc. update:
* [svn-r9946] Purpose:James Laird2005-02-062-0/+2
| | | | | | | | | | | | | | Bug fix Description: Parallel make was having trouble in fortran/testpar directory on sol. Solution: Added a dependency to ensure that things are built in the correct order. Platforms tested: sol
* [svn-r9945] Purpose:Albert Cheng2005-02-062-48/+67
| | | | | | | | | | | | | | | Bug fix Description: h5diff_main.c contained some debug printf statment that produced unexpected output. Commented them out. testh5diff.sh: implemented code to test ph5diff tests but ph5diff has some errors that generated unexpected output. Temporary hacked to skip tests if run by daily test account. Platforms tested: Tested in heping, serial and parallel.
* [svn-r9944] Purpose:Quincey Koziol2005-02-052-47/+34
| | | | | | | | | | | Bug fix (sorta) Description: Disable btree2 testing until Monday, when I can look into the failures without a toddler on my lap. :-) Platforms tested: FreeBSD 4.11 (sleipnir)
* [svn-r9943] Purpose:James Laird2005-02-052-17/+68
| | | | | | | | | | | | | | | Bug fix Description: /fortran/testpar build breaks when making in parallel Solution: Massage depdendencies slightly to ensure that object files are built after module file. Also made sure that module file gets cleaned properly. Platforms tested: eirene
* [svn-r9941] Purpose:Quincey Koziol2005-02-052-0/+10
| | | | | | | | | | | Code cleanup Description: Clean up some testfiles that were left behind... Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r9940] Purpose:Quincey Koziol2005-02-041-7/+12
| | | | | | | | | | | Bug fix Description: Correct the record count for the newly split root node Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9939] Purpose:Quincey Koziol2005-02-0412-756/+1590
| | | | | | | | | | | | | New feature Description: Expand v2 B-tree code to support splitting the root node when enough records are inserted and move metadata cache callbacks into their own source file. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor for h5committest
* [svn-r9938] Purpose:Quincey Koziol2005-02-041-1/+1
| | | | | | | | | | | | Bug fix Description: Correct path to 'sh' and set executable, so this script can be run directly from the command line. Platforms tested: Linux 2.4 (heping) Too minor to require h5committest
* [svn-r9937] Purpose:Robert E. McGrath2005-02-041-1/+2
| | | | | | | | | | | | | | | Bug Description: Assertion failure Solution: don't call decrement when the object doesn't exist. Platforms tested: shanti,verbena Misc. update:
* [svn-r9934] Purpose:Robert E. McGrath2005-02-041-1/+17
| | | | | | | | | | | | | | | Bug Description: Refinement to bug fix #282 Solution: Altered argument handling to do a better default. Platforms tested: verbena, shanti Misc. update:
* [svn-r9933] Purpose:Quincey Koziol2005-02-041-1/+3
| | | | | | | | | | | Bug fix Description: Add names for new B-tree objects to metadata cache code. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor for h5committest
* [svn-r9932] Updated with the newly added testph5diff.sh file.Albert Cheng2005-02-041-0/+1
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* [svn-r9931] Purpose:Albert Cheng2005-02-042-2/+98
| | | | | | | | | | | new features Description: Added a parallel option to testh5diff.sh to do parallel h5diff tests. Added testph5diff.sh to invoke testh5diff.sh with parallel mode. Platforms tested: Tested in heping (serial and pp).
* [svn-r9930] James Laird2005-02-0349-104/+102
| | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: Parallel builds were breaking in tools/lib Solution: talign didn't realize it depended on libh5tools.la because its dependencies listed the full path (../../tools/lib/libh5tools.la). Changed this, and made similar changes in a couple of other directories. This checkin should also add the --foreign flag to every Makefile.in Platforms tested: sleipnir (minor change)
* [svn-r9929] Purpose:Albert Cheng2005-02-032-13/+62
| | | | | | | | | | | | | Features Description: Added the option to build ph5diff and run testphdf5.sh when parallel mode is enabled. Platforms tested: tested in heping, both serial and parallel. Misc. update:
* [svn-r9928] Purpose:Quincey Koziol2005-02-0359-114/+2247
| | | | | | | | | | | | | New feature Description: Add basic code for new B-tree implementation. They don't do much yet, aren't hooked up to anything yet and the format may change, but I'd like to start getting them into the daily tests. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9927] Purpose:Robert E. McGrath2005-02-031-0/+30
| | | | | | | | | | | | | | | Bug fix #282 Description: Problem with byte order Solution: Do it right. See 1.6 checkin Platforms tested: verbena, shanti Misc. update:
* [svn-r9925] Purpose:Leon Arber2005-02-025-512/+241
| | | | | | | | | | | | | | | | | | | Bug Fix Description: Permanent fix for the incompatibilities between h5diff and h5repack. Solution: h5diff now contains the code to run both parallel and serial diffs. Depending on how the binary is called, it will run either the serial or the parallel versions respectively. Platforms tested: heping(serial + parallel), copper. Misc. update:
* [svn-r9924] Purpose:Robert E. McGrath2005-02-024-6/+66
| | | | | | | | | | | | | | | Bug fix (#56) Description: h52gif creash for data > 1 byt Solution: check datatype and return with error message if not 1 byte int Platforms tested: shanti,verbena Misc. update:
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