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* | Merge pull request #1545 in HDFFV/hdf5 from ~JHENDERSON/hdf5:hdf5_1_10 to ↵Larry Knox2019-02-1457-16024/+18439
|\ \ | |/ |/| | | | | | | | | hdf5_1_10 * commit '35f48aac5b2e10d6c3e2b3176bbde6aad209c758': Re-write of Java JNI error handling
| * Re-write of Java JNI error handlingJordan Henderson2019-02-1457-16024/+18439
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* Merge pull request #1541 in HDFFV/hdf5 from ↵Ray Lu2019-02-131-4/+4
|\ | | | | | | | | | | | | ~SONGYULU/hdf5_ray:1_10/HDFFV-10601-issues-with-chunk-cache-hash to hdf5_1_10 * commit 'dfedd864335fab2a676357c6647bd09aeb26575d': Changing functions H5Dcreate and H5Dopen to H5Dcreate2 and H5Dopen2 for backward compatibility.
| * Changing functions H5Dcreate and H5Dopen to H5Dcreate2 and H5Dopen2 for ↵Songyu Lu2019-02-131-4/+4
| | | | | | | | backward compatibility.
* | Merge pull request #1536 in HDFFV/hdf5 from ~JHENDERSON/hdf5:hdf5_1_10 to ↵Jordan Henderson2019-02-1211-87/+381
|\ \ | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '2e44998a70924b77f186f6cb60924035fd24441d': Add RELEASE.txt note for collective metadata read fixes Fix some collective metadata read issues
| * | Add RELEASE.txt note for collective metadata read fixesJordan Henderson2019-02-121-0/+16
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| * | Fix some collective metadata read issuesJordan Henderson2019-02-1210-87/+365
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* | | Merge pull request #1535 in HDFFV/hdf5 from ↵Ray Lu2019-02-127-18/+133
|\ \ \ | |/ / |/| / | |/ | | | | | | ~SONGYULU/hdf5_ray:1_10/HDFFV-10601-issues-with-chunk-cache-hash to hdf5_1_10 * commit '4e31361dad4add06792b652dbe5b97e501f9031d': I'm bringing the fixes for the following Jira issues from the develop branch to 1.10 branch: HDFFV-10571: Divided by Zero vulnerability. HDFFV-10601: Issues with chunk cache hash value calcuation. HDFFV-10607: Patches for warnings in the core libraries. HDFFV-10635: HDF5 library segmentation fault with H5Sselect_element.
| * I'm bringing the fixes for the following Jira issues from the develop branch ↵Songyu Lu2019-02-127-18/+133
|/ | | | | | | | | to 1.10 branch: HDFFV-10571: Divided by Zero vulnerability. HDFFV-10601: Issues with chunk cache hash value calcuation. HDFFV-10607: Patches for warnings in the core libraries. HDFFV-10635: HDF5 library segmentation fault with H5Sselect_element.
* Merge pull request #1529 in HDFFV/hdf5 from ~JHENDERSON/hdf5_merge:hdf5_1_10 ↵Jordan Henderson2019-02-072-0/+7
|\ | | | | | | | | | | | | to hdf5_1_10 * commit '530fab929b1a77490574cb7114b4b3a1b445ed6f': Fix test issue in testpar/t_dset.c with MPI-2 implementations
| * Fix test issue in testpar/t_dset.c with MPI-2 implementationsJordan Henderson2019-02-072-0/+7
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* Merge pull request #1526 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-02-0719-408/+281
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '50138c3153a0cd923b298aca99f6a353681637db': Add missing assignments Refactor TIMEOUT values Correct name of variable Cleanup F2003 option for CMake Remove obsolete reference Remove obsolete file Update Examples version and references HDFFV-10697 Disable compression option if source unavailable
| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-02-076-2/+61
| |\ | |/ |/| | | | | * commit 'e594811caf10c66c12cad7c554854deea262d9cb': Merge pull request #1522 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* | Merge pull request #1525 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to ↵Vailin Choi2019-02-066-2/+61
|\ \ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '29fc6bcd77b0e975d807ecedf16b998493f88bb0': Merge pull request #1522 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
| * | Merge pull request #1522 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2019-02-066-2/+61
|/ / | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '7f5741825db0737db5ac46c43009681508a73002': Add release notes information. Modification based on feedback from pull request. Modification based on feedback from pull request. There is performance issue when closing an object. The slow down is due to the search of the "tag_list" to find out the "corked" status of an object. The fix: (1) Add a counter "num_objs_corked" in the cache structure to track the number of "corked" objects. (2) Skip the search of "tag_list" if the counter is zero i.e. no "corked" objects. Conflicts: release_docs/RELEASE.txt
| * Add missing assignmentsAllen Byrne2019-02-061-0/+5
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| * Refactor TIMEOUT valuesAllen Byrne2019-02-064-18/+18
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| * Correct name of variableAllen Byrne2019-02-061-1/+1
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| * Cleanup F2003 option for CMakeAllen Byrne2019-02-067-164/+122
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| * Remove obsolete referenceAllen Byrne2019-02-061-1/+1
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| * Remove obsolete fileAllen Byrne2019-02-061-1/+0
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| * Update Examples version and referencesAllen Byrne2019-02-063-219/+113
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| * HDFFV-10697 Disable compression option if source unavailableAllen Byrne2019-02-054-5/+22
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* Merge pull request #1521 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to ↵Dana Robinson2019-02-041-0/+1
|\ | | | | | | | | | | | | hdf5_1_10 * commit 'f8c838726150d953fb06fc93029139b32a20291f': Added a line for the CMake pread/write option to INSTALL_CMake.txt.
| * Added a line for the CMake pread/write option to INSTALL_CMake.txt.Dana Robinson2019-02-041-0/+1
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* Merge pull request #1519 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to ↵Dana Robinson2019-02-0415-44/+193
|\ | | | | | | | | | | | | hdf5_1_10 * commit '12fc6bf95507244b2f18a56f8ff76cc0ea922fea': Merge of changes from develop for 1.10.5. Added RELEASE.txt entries for new features.
| * Merge of changes from develop for 1.10.5.Dana Robinson2019-02-0415-44/+193
|/ | | | Added RELEASE.txt entries for new features.
* Merge pull request #1514 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-02-019-28/+163
|\ | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_1_10_bmr:hdf5_1_10 to hdf5_1_10 HDFFV-10586, HDFFV-10588, HDFFV-10684 * commit '7fb50a9700cddfb4aba6d69127590c8460031413': Renamed data file Fixed HDFFV-10586, HDFFV-10588, and HDFFV-10684
| * Renamed data fileBinh-Minh Ribler2019-02-015-5/+5
| | | | | | | | | | | | | | | | | | Description: Renamed data file with long name to a shorter name. Revised an entry in RELEASE.txt Platforms tested: Linux/64 (jelly) Darwin (osx1010test)
| * Merge branch 'hdf5_1_10' of ↵Binh-Minh Ribler2019-01-3132-969/+1162
| |\ | |/ |/| | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_1_10_bmr into hdf5_1_10
* | Merge pull request #1512 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:hdf5_1_10 to ↵Neil Fortner2019-01-291-0/+6
|\ \ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'ec42c4e3e141ba4df343be8e519cb704676a5424': Add RELEASE.txt note for unknown message fix (pull request 1448)
| * | Add RELEASE.txt note for unknown message fix (pull request 1448)Neil Fortner2019-01-291-0/+6
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* | Merge pull request #1510 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to ↵Dana Robinson2019-01-291-9/+9
|\ \ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'a09bcbcb07609ee38a1ccbcfafd4fd5a9dbe27f5': Fixed a bug identified by valgrind in the cork test.
| * | Fixed a bug identified by valgrind in the cork test.Dana Robinson2019-01-291-9/+9
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* | Merge pull request #1505 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-01-283-50/+45
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'cfebcaa2a307192ae02d2afe859e8aa42ce76e1a': HDFFV-10686 Remove version 1 reference names Remove Not_yet_versioned files Revert CMake and fix H5Oget_info - H5Ovisit versions
| * | HDFFV-10686 Remove version 1 reference namesAllen Byrne2019-01-281-44/+44
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-01-283-3/+19
| |\ \ | |/ / |/| | | | | | | | * commit '611ecb5db4051cbf762cc24944ee75ea5284c5d2': Fixed HDFFV-10578
* | | Merge pull request #1480 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-283-3/+19
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_1_10_bmr:hdf5_1_10 to hdf5_1_10 * commit '2880ef43eb03526e7d75551720547b85e66a3086': Fixed HDFFV-10578
| | * | Remove Not_yet_versioned filesAllen Byrne2019-01-281-5/+0
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| | * | Revert CMake and fix H5Oget_info - H5Ovisit versionsAllen Byrne2019-01-271-1/+1
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* | | Merge pull request #1501 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-01-263-93/+93
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'd0abe6502af9846f77a647fddb0fda1da11a0a75': CMake fix, makefile fix, direct_chunk valgrind fix
| * | | CMake fix, makefile fix, direct_chunk valgrind fixAllen Byrne2019-01-253-93/+93
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* | | Merge pull request #1493 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-01-2411-580/+532
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '217d57d30d2d62f987affcc8859df982dc86d2b3': CMake fix Java html fix and cmake update HDFFV-10686 add note HDFFV-10686 revert H5Oget_info1 to H5Oget_info(H5Ovisit)
| * | | CMake fixAllen Byrne2019-01-241-1/+1
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| * | | Java html fix and cmake updateAllen Byrne2019-01-243-66/+74
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| * | | HDFFV-10686 add noteAllen Byrne2019-01-241-0/+15
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| * | | HDFFV-10686 revert H5Oget_info1 to H5Oget_info(H5Ovisit)Allen Byrne2019-01-247-515/+444
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* | | | Merge pull request #1490 in HDFFV/hdf5 from ~JHENDERSON/hdf5:hdf5_1_10 to ↵Jordan Henderson2019-01-242-139/+227
|\ \ \ \ | |/ / / |/| | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'e90d59a69f2750ac55ef5da20df5e8cba7693134': Add RELEASE.txt note for parallel filters test fix Updates to t_filters_parallel for missing filters
| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Jordan Henderson2019-01-244-17/+37
| |\ \ \ | |/ / / |/| | | | | | | | | | | | | | | | | | | | | | | * commit 'd26963b180a052ac063907f95596a7ecad08ef8e': Add clear objects to ignore tests Add new clear tests to ignore list Cleanup variable names HDFFV-10685 Always set version flags on OSX
* | | | Merge pull request #1492 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-01-224-17/+37
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '7367fc0c1b916cffe50d1b8d729ccccfd6a9ec77': Add clear objects to ignore tests Add new clear tests to ignore list Cleanup variable names HDFFV-10685 Always set version flags on OSX