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* [svn-r11573] Purpose:James Laird2005-10-1737-47/+96
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Changed configure.in to use an environment variable TR to set the path to the tr utility. Solution: There are two kind of tr on Solaris with slightly different syntax. HDF5's configure relies on the "standard" tr. Traditionally, HDF5ers have needed to make sure that the "right" tr was found before the wrong one in their path; now they can use an environment variable. Platforms tested: mir, shanti, sol Misc. update: Forgot to update release notes. Off to do that now.
* [svn-r11572] Purpose:MuQun Yang2005-10-172-208/+294
| | | | | | | | | | | | | | | Code clean-up for collective regular chunk IO tests. Description: Add descriptions for each tests for future maintenance. Solution: Platforms tested: Mostly comments, No need to use h5committest. heping(linux 2.4) Misc. update:
* [svn-r11569] Purpose:Albert Cheng2005-10-161-1/+4
| | | | | | | | | | | | | | Improvement. Description: The df command sometimes hangs because of file system problem. Solution: Run the df command as background process and wait for it 10 seconds to finish, then just continues. Platforms tested: Should work. Daily test will test it.
* [svn-r11567] Purpose:James Laird2005-10-142-1/+1
| | | | | | | | | | | | | | Bug fix Description: Changed the name of a file from the last fix. createnoenc.c is not gen_noencoder.c Solution: This is just a more standard name for the file. Platforms tested: tested in previous check-in; forgot to commit to cvs.
* [svn-r11566] Purpose:James Laird2005-10-1439-62/+352
| | | | | | | | | | | | | | | | | | | | | | | | | | Makefile bug fix Description: Previously, automake didn't output rules to build perform/mpi-perf or the test/gen_* programs. Now these can be built by typing 'make mpi-perf' (or 'make foo') or by configuring with --enable-build-all. Solution: Automake doesn't like having rules for programs it doesn't build. Tricked it by having these programs built "sometimes"--whenever the user enables --build-all. This should be used mostly for testing and to ensure that these helper programs compile. ***IMPORTANT*** These programs do *not* currently compile. When --enable-build-all is used (not the default), gen_new_fill fails because it uses an old API. This is an existing "bug" that has simply been exposed by this checkin. Platforms tested: sleipnir, modi4, sol Misc. update:
* [svn-r11563] Purpose:Albert Cheng2005-10-141-0/+6
| | | | | | | Added commands to show host status such as uptime and disk usages. Platforms tested: Eyeballed. Will check the output of daily test.
* [svn-r11562] Purpose:MuQun Yang2005-10-141-0/+1
| | | | | | | | | | | | | | | | | Avoid bug for family file driver backward compatibility with 1.6. Description: Because there is no srcdir on windows, string pathname should be initialized as NULL before using strcat. Solution: Changed the code as above. Platforms tested: too minor to test. Misc. update:
* [svn-r11558] Purpose:Quincey Koziol2005-10-134-15/+746
| | | | | | | | | | | | | | | | Bug fix Description: Check in Kent's fixes to hyperslab rebuilding code that should correctly detect situation when different sub-hyperslabs exist in a higher dimension. Solution: Remember previous sub-hyperslab information and compare that with newly generated sub-hyperslab to make certain they are the same. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11557] Purpose:Quincey Koziol2005-10-131-241/+97
| | | | | | | | | | | | | | | Bug fix Description: Mark continuation message & chunk as dirty for case where chunk is extended. Also refactored code to reduce duplication. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 Too minor to require h5committest
* [svn-r11555] Purpose: Code cleanupBinh-Minh Ribler2005-10-127-30/+9
| | | | | | | | | | Description: Removed obsolete function CompType::getMemberDims. Fixed some typos. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol)
* [svn-r11551] Purpose:Albert Cheng2005-10-111-0/+12
| | | | UPdated Copyright notice.
* [svn-r11550] Purpose:Albert Cheng2005-10-111-1/+14
| | | | Updated Copyright notice.
* [svn-r11548] Purpose:Albert Cheng2005-10-111-16/+24
| | | | | | | | Added another case of shell-like style file--if lines leading by #'s are found, treat it like a shell-like style file. Platforms tested: hand tested in heping.
* [svn-r11544] Purpose:Albert Cheng2005-10-111-1/+26
| | | | | | | | | New feature. Description: Added code that try to guess what type of file it is by inspecting the first 5 lines. Then it tries to find the Copyright notice according to the guess.
* [svn-r11543] Purpose:James Laird2005-10-112-1/+32
| | | | | | | | | | | | Copyright fix Description: Added copyright notice to fortran/src/H5match_types.c and fortran/src/H5test_kind.f90 Platforms tested: heping
* [svn-r11542] Purpose:Albert Cheng2005-10-113-0/+42
| | | | | | | Inserted Copyright notice. Platforms tested: tested in heping.
* [svn-r11539] Purpose:Albert Cheng2005-10-111-0/+14
| | | | | | | Added Copyright notice. Platforms tested: Tested in heping.
* [svn-r11537] Purpose:Albert Cheng2005-10-1137-253/+434
| | | | | | Fixed the copyright notice. Tested in heping.
* [svn-r11536] Purpose:Albert Cheng2005-10-112-4/+22
| | | | Fixed the copyright notice.
* [svn-r11535] Purpose:Albert Cheng2005-10-111-42/+54
| | | | | | | | | | | | Another revamp. Description: Now search the copyright notice within the beginning 60 lines only. (This applies to source code. For HTML files, it is still search all the way through the file.) Platforms tested: Hand tested.
* [svn-r11532] Purpose:Albert Cheng2005-10-112-0/+28
| | | | | | | Added copyright notice. Platforms tested: not tested as they are not even in Makefile.
* [svn-r11526] Description:Albert Cheng2005-10-111-127/+278
| | | | | | | | A near total rewrite, added initialization feature, more flexible where the copyright notice is. Platforms tested: Hand tested.
* [svn-r11525] Purpose:Albert Cheng2005-10-112-1/+21
| | | | | | | | | | Feature. Description: Initialization file for chkcopyright. Platforms tested: Hand tested.
* [svn-r11524] Purpose:Albert Cheng2005-10-111-0/+14
| | | | | | | Inserted copyright notice. Platforms tested: Tested in heping only since only a comment block was added.
* [svn-r11519] Purpose:James Laird2005-10-103-2/+217
| | | | | | | | | | | | | | | Bug fix Description: Some platforms complain that tcp.h is present but cannot be compiled. Solution: This is because tcp.h needs in.h to be included. Checked for netinet/in.h and included it when netinet/tcp.h is being checked. Platforms tested: mir, cu11
* [svn-r11517] Purpose: Fixed commentsBinh-Minh Ribler2005-10-101-4/+4
| | | | | | | | | Description: Fixed the description of two parameters that were swapped by mistake. Platforms tested: Linux 2.4 (heping) - very minor
* [svn-r11515] Purpose:Albert Cheng2005-10-101-1/+1
| | | | | | | | | | Fixed copyright notice. Description: A line is missing in the copyright notice. Fixed. Platforms tested: No test since it is only a fix in a comment block.
* [svn-r11514] Purpose:James Laird2005-10-071-2/+16
| | | | | | | | | | | | | | | | | | | Bug fix Description: Fixed config file for apple powerpcs. Should detect xlf more often (though not infallibly). Should disable shared libraries when xlf is being used. Solution: Since neither xlf nor f95 have "version" options (which could be used to identify which compiler is being used), the config file checks if the fortran compiler is named 'xlf' (or /path/xlf). If not, it assumes the compiler must be f95. xlf is still the default if no compiler is named at all. Platforms tested: pommier (change only to mac-specific config file)
* [svn-r11513] Purpose:Fang Guo2005-10-071-4/+4
| | | | | | | | | | | | Maintenance on Windows Description: hl fortran debug dll tests missed and hl fortran release dll tested twice before Add in hl fortran debug dll tests and remove one hl fortran release dll test Solution: Platforms tested: Windows XP Misc. update:
* [svn-r11512] Purpose:Fang Guo2005-10-071-1/+1
| | | | | | | | | | | Maintenance on Windows Description: Enable talign test on Windows. Solution: Platforms tested: Windows XP Misc. update:
* [svn-r11507] Purpose:James Laird2005-10-062-1/+2
| | | | | | | Mentioned support for Cray X1 in 1.7 release notes. Solution: Cray X1 has been working for a while, just never wrote it down before now.
* [svn-r11504] UPdated with the adding of mpich2 informal support.Albert Cheng2005-10-061-0/+1
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* [svn-r11500] Bug fix.Albert Cheng2005-10-051-1/+6
| | | | | | | | | SETUP Was using "cp" command which means file $2 will inherit the permission setting of file $1. If $1 is read-only, so will $2. That will cause failure when the test attempts to write it later on. Changed to use the "cat" command. Tested in LANL QSC and Flash.
* [svn-r11490] Purpose:Quincey Koziol2005-10-0311-17/+555
| | | | | | | | | | | | | | | Bug fix Description: Fix "double root open" bug and apply same fix to datasets & named datatypes. Also fix bug in symbol table entry lookup code that would "transfer" an object from one file handle to another file handle when the two file handles were opened on the same actual file. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11489] Snapshot version 1.7 release 51HDF Admin2005-10-027-17/+17
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* [svn-r11487] Purpose:Quincey Koziol2005-10-0172-852/+864
| | | | | | | | | | | Code cleanup Description: Tweak copyright on C++ source files to reduce whining by copyright checking script. Platforms tested: FreeBSD 4.11 (sleipnir) w/C++
* [svn-r11486] Purpose:Albert Cheng2005-09-301-1/+1
| | | | | | | | | | | | | Bug fix. Description: mpich2 using f95 did not support function 'unlink'. Removed the unlink call for now. Need a better solution. Platforms tested: heping using mpich and mpich2 versions of mpif90. Misc. update:
* [svn-r11485] Purpose:Quincey Koziol2005-09-302-170/+173
| | | | | | | | | | | | Code cleanup Description: Clean up & optimize (a little) the recent "hyperslab rebuilding" code w/Kent. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11483] Purpose:Leon Arber2005-09-291-7/+7
| | | | | | | | | | | | | | | | bug fix. Description: The complex derived datatype test assumed that the fill value would be 0. This is not the case on all systems. Solution: Modified the test to check against a known value in the outbuf array, instead of the fill value. Platforms tested: heping and MCR. Misc. update:
* [svn-r11481] Purpose:Leon Arber2005-09-291-1/+1
| | | | | | | | | | | | | | | bug fix. Description: Fixed typo in a comment. The word "file" was supposed to be "fill." The explanation of how the complex derived datatype test works is much clearer now. Solution: Platforms tested: minor change. Misc. update:
* [svn-r11480] Purpose:Fang Guo2005-09-292-2/+14
| | | | | | | | | | | Maintenance on Windows Description: No alarm function on Windows, opt out Solution: Platforms tested: MSVS 6.0 on Windows XP Misc. update:
* [svn-r11479] Purpose:Fang Guo2005-09-291-5/+0
| | | | | | | | | | | Maintenance on Windows Description: No Alarm function on Windows Solution: Platforms tested: MSVS 6.0 on Windows XP Misc. update:
* [svn-r11478] Purpose:Albert Cheng2005-09-2935-280/+245
| | | | | | | | | | | | | | | | bug fix. Description: When a parallel test script test fails, make would continue because the way it was setup inside a for loop. Fixed it by issuing an exit 1 inside the loop. There was also a typo error in the newer command comparision that it must be $${chkname} in order to be valid. Also, the test script itself was not checked in the newer lists. All fixed. Platforms tested: h5committested and also hand tested in heping pp mode.
* [svn-r11477] Purpose:Albert Cheng2005-09-292-0/+5
| | | | | | | | | | feature. Description: added the recognition of -lmpich as a form of MPI library. Platforms tested: Tested in heping. Real test will be in MCR.
* [svn-r11476] Purpose:Albert Cheng2005-09-292-3/+91
| | | | | | | | | | feature. Description: added the recognition of -lmpich as a form of MPI library. Platforms tested: Tested in heping. Real test will be in MCR.
* [svn-r11475] Purpose:John Mainzer2005-09-281-0/+1
| | | | | | | | | | | | | | | | | | | | | Bug fix Description: In production builds, H5MM_malloc was undefined in H5AC.c Solution: Include H5MMprivate.h in H5AC.c, which defines H5MM_malloc() in both debug and production modes. Platforms tested: h5committested, serial production build on Heping Misc. update:
* [svn-r11471] Purpose:Albert Cheng2005-09-271-17/+17
| | | | | | | | | | | | | | | | | | revision. Description: The copyright notice for Makefile(in) were fixed at the beginning of the files. But they are now generated by automake and autoconf such that Gnu jams its own copyright block at the beginning. Solution: Changed the rule such that the HDF5 copyright notice can be somewhere else in the file as long as they are together as one paragraph. Also added recognition of Makefile.am as a possible MAKEFILE type. Platforms tested: Tested by hand in heping.
* [svn-r11470] Purpose:John Mainzer2005-09-2721-410/+3992
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Repair synchronization bug in the metadata cache in PHDF5 Also repair numerous other bugs that surfaced in testing the bug fix. Description: While operations modifying metadata must be collective, we allow independant reads. This allows metadata caches on different processes to adjust to different sizes, and to place the entries on their dirty lists in different orders. Since only process 0 actually writes metadata to disk (all other processes thought they did, but the writes were discarded on the theory that they had to be collective), this made it possible for another process to modify metadata, flush it, and then read it back in in its original form (pre-modification) form. The possibilities for file corruption should be obvious. Solution: Make the policy that only process 0 can write to file explicit, and visible to the metadata caches. Thus only process 0 may flush dirty entries -- all other caches must retain dirty entries until they are informed by process 0 that the entries are clean. Synchronization is handled by counting the bytes of dirty cache entries created, and then synching up between the caches whenever the sum exceeds an (eventually user specified) limit. Dirty metadata creation is consistent across all processes because all operations modifying metadata must be collective. This change uncovered may bugs which are repaired in this checkin. It also required modification of H5HL and H5O to allocate file space on insertion rather than on flush from cache. Platforms tested: H5committest, heping(parallel & serial) Misc. update:
* [svn-r11467] Purpose:Albert Cheng2005-09-273-2/+6
| | | | | | | Add the detection of the alarm function. Platforms tested: Tested in heping.
* [svn-r11466] Purpose:MuQun Yang2005-09-271-179/+53
| | | | | | | | | | | | | | Code refinement Description: Make the re-build hyperslab selection code shorter to be maintained easily Solution: Platforms tested: Sol 2.9, linux 2.4, Aix 5.1 Misc. update:
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