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* Remove more author/date lines from RELEASE.txt (#2767)Dana Robinson2023-04-171-6/+0
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* Sanitize B-tree k ohdr message decode call (#2754)Dana Robinson2023-04-171-13/+20
| | | | * Check buffer bounds * Clean up memory on errors
* Update hdfeos5 workflow concurrency group (#2766)jhendersonHDF2023-04-171-1/+1
| | | Changes concurrency group for hdfeos5 workflow so that it is separate from the concurrency group for the CI workflow
* Sanitize the attribute info message decode fxn (#2748)Dana Robinson2023-04-171-13/+24
| | | | Adds bounds checking on the buffer in the attribute info message's decode function (H5O__ainfo_decode).
* H5Spoint.c: Fix mistake in comment (#2750)Dave Allured2023-04-161-1/+1
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* Remove dates and initials from RELEASE.txt entries (#2746)Dana Robinson2023-04-161-19/+13
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* Run parallel clang-format tasks (#2740)Dana Robinson2023-04-151-1/+1
| | | Adds xargs arguments to enable running clang-format in parallel
* Fix memory leaks when processing OH cont messages (#2723)Dana Robinson2023-04-143-13/+30
| | | | | | | | | | | Malformed object header continuation messages can result in a too-small buffer being passed to the decode function, which could lead to reading past the end of the buffer. Additionally, errors in processing these malformed messages can lead to allocated memory not being cleaned up. This fix adds bounds checking and cleanup code to the object header continuation message processing. Fixes #2604
* Add Elena to the list of Fortran developers in CODEOWNERS (#2741)Dana Robinson2023-04-141-1/+1
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* Cache macro parameter name consistency (#2738)Quincey Koziol2023-04-141-9/+9
| | | * More cache macro parameter consistency
* Cache macro error consistency (#2739)Quincey Koziol2023-04-142-86/+70
| | | * Pass failure value consistently to all macro errors
* Move cache image macros (#2732)Quincey Koziol2023-04-142-33/+42
| | | | | | * Move cache image stats macros to cache image source file * Disable formatting on the macros
* Cache macro tidy (#2731)Quincey Koziol2023-04-141-98/+98
| | | * Make cache macro parameter names more consistent
* Fix out of bounds in `hdf5/src/H5Fint.c:2859` (#2691)Kobrin Eli2023-04-134-7/+84
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* Fixed GH-2603, heap-buffer-overflow in H5O__linfo_decode (#2697)bmribler2023-04-132-8/+32
| | | | | | * Fixed GH-2603, heap-buffer-overflow in H5O__linfo_decode Verified with valgrind -v --tool=memcheck --leak-check=full h5dump POV-GH-2603 The several invalid reads shown originally are now gone.
* Add a RELEASE.txt note for GH #2605 (#2724)Dana Robinson2023-04-131-0/+10
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* Remove unused macros (#2722)Quincey Koziol2023-04-131-147/+0
| | | * Remove unused macros
* Fix java depends and pdb lib install (#2720)Allen Byrne2023-04-135-2/+24
| | | | | | | * Fix java depends and pdb lib install * Correct end of for loop depends * fix location of set last_test
* Remove dead code for H5C__SLIST_OPT_ENABLED (#2721)Quincey Koziol2023-04-132-15/+1
| | | * Remove dead code for H5C__SLIST_OPT_ENABLED
* Refactor H5C_entry_in_skip_list (#2719)Quincey Koziol2023-04-133-13/+21
| | | * Refactor H5C__entry_in_skip_list to package scope
* Identify some options as advanced (#2717)Allen Byrne2023-04-136-0/+12
| | | | | | | * Identify some options as advanced Add explicit option statement to set default for CMake option * Revert advanced setting for file locks
* Update HDF-EOS5 workflow to mirror main.yml (#2710)Dana Robinson2023-04-131-1/+18
| | | Adds paths to ignore, concurrency, etc.
* Fix cache validate (#2718)Quincey Koziol2023-04-131-2/+2
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* Refactor cache mark flush dep (#2711)Quincey Koziol2023-04-132-4/+4
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* Refactor cache validation (#2699)Quincey Koziol2023-04-134-65/+62
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Correct concurrency bugs when running tests, along with a bugfix & small warning cleanup. * Committing clang-format changes * Allow spaces (and tabs) in VOL connector info string from environment variable. * Parse connector name from HDF5_PLUGIN_PATH environment variable better * Correct H5VLquery_optional to use H5VL routine instead of H5I. Also add an error message to the failure return value from not finding a plugin. * Play nice with existing plugin paths * Use API routine to determine if native connector is terminal. * Committing clang-format changes * Make string size larger, to allow for connectors with longer names. * Be more flexible about testing external pass through connectors, especially if they have registered new optional operations. * Make cache validation routines package local --------- Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: AWS ParallelCluster user <ec2-user@ip-10-0-0-65.us-east-2.compute.internal> Co-authored-by: Koziol <qkoziol@88665a374c70.ant.amazon.com>
* Remove duplicated H5_IS_BUFFER_OVERFLOW macro (#2700)jhendersonHDF2023-04-121-5/+0
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* Change name of test file to avoid conflict (#2701)Allen Byrne2023-04-121-2/+2
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* Revert "Added tables of CVE issues (#2685)" (#2696)Dana Robinson2023-04-122-174/+0
| | | This reverts commit b749a4ef09a6fa2bdb02cf49eddda364dcb9a0cc.
* Added tables of CVE issues (#2685)bmribler2023-04-122-0/+174
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* Fix for github issue #2599: (#2665)vchoi-hdfgroup2023-04-122-1/+21
| | | | | | | | | | | | | | | * Fix for github issue #2599: As indicated in the description, memory leak is detected when running "./h5dump pov". The problem is: when calling H5O__add_cont_msg() from H5O__chunk_deserialize(), memory is allocated for cont_msg_info->msgs. Eventually, when the library tries to load the continuation message via H5AC_protect() in H5O_protect(), error is encountered due to illegal info in the continuation message. Due to the error, H5O_protect() exits but the memory allocated for cont_msg_info->msgs is not freed. When we figure out how to handle fuzzed files that we didn't generate, a test needs to be added to run h5dump with the provided "pov" file. * Add message to release notes for the fix to github issue #2599.
* Use additional CPUs in GitHub actions (#2695)Dana Robinson2023-04-121-4/+4
| | | | | | * Build: 3 CPUs * Tests: 2 CPUs For both Autotools and CMake
* Cache tidy (#2693)Quincey Koziol2023-04-127-1189/+524
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Correct concurrency bugs when running tests, along with a bugfix & small warning cleanup. * Committing clang-format changes * Allow spaces (and tabs) in VOL connector info string from environment variable. * Parse connector name from HDF5_PLUGIN_PATH environment variable better * Correct H5VLquery_optional to use H5VL routine instead of H5I. Also add an error message to the failure return value from not finding a plugin. * Play nice with existing plugin paths * Use API routine to determine if native connector is terminal. * Committing clang-format changes * Make string size larger, to allow for connectors with longer names. * Be more flexible about testing external pass through connectors, especially if they have registered new optional operations. * Bring style closer to library's agreed coding style * Committing clang-format changes --------- Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: AWS ParallelCluster user <ec2-user@ip-10-0-0-65.us-east-2.compute.internal> Co-authored-by: Koziol <qkoziol@88665a374c70.ant.amazon.com>
* Clean up memory allocated when reading messages in H5Dlayout on error ↵glennsong092023-04-112-5/+25
| | | | (#2602) (#2687)
* Fix invalid memory access in H5O__ginfo_decode (#2663)mattjala2023-04-113-1/+29
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* Add buffer overrun checks to H5O__layout_decode and H5O__sdspace_decode (#2679)jhendersonHDF2023-04-114-55/+276
| | | Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Perlmutter was fixed (#2677)Scot Breitenfeld2023-04-111-20/+0
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* Fix improper include of build directory (#2422, #2621) (#2667)jhendersonHDF2023-04-112-4/+20
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* CMake: Let runtime checks through stdout only (#2666)Julien Schueller2023-04-113-23/+33
| | | | This avoids mixing emulators errors on stderr to configure results while cross-compiling with wine.
* ci: add HDF-EOS5 test action (#2415) (#2625)H. Joe Lee2023-04-111-0/+30
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* Fix a heap buffer overflow during H5D__compact_readvv (GitHub #2606) (#2664)jhendersonHDF2023-04-112-0/+46
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* Remove -Wunused-but-set-variable warnings in tests (#2661)Allen Byrne2023-04-113-31/+6
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* Update release schedule (#2692)Dana Robinson2023-04-113-9/+12
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* Dead code removal (#2690)Quincey Koziol2023-04-112-254/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Correct concurrency bugs when running tests, along with a bugfix & small warning cleanup. * Committing clang-format changes * Allow spaces (and tabs) in VOL connector info string from environment variable. * Parse connector name from HDF5_PLUGIN_PATH environment variable better * Correct H5VLquery_optional to use H5VL routine instead of H5I. Also add an error message to the failure return value from not finding a plugin. * Play nice with existing plugin paths * Use API routine to determine if native connector is terminal. * Committing clang-format changes * Make string size larger, to allow for connectors with longer names. * Be more flexible about testing external pass through connectors, especially if they have registered new optional operations. * Dead code removal * Committing clang-format changes --------- Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: AWS ParallelCluster user <ec2-user@ip-10-0-0-65.us-east-2.compute.internal> Co-authored-by: Koziol <qkoziol@88665a374c70.ant.amazon.com>
* Comment cleanup (#2689)Quincey Koziol2023-04-11126-2959/+154
| | | * Clean up content and redundant logging in comments.
* Remove dead code hidden behind #ifdef LATER (#2686)Dana Robinson2023-04-1012-300/+4
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* Fix #2598 sanitize leak (#2660)Allen Byrne2023-04-072-5/+10
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* Minor fixes for CMake code and install docs (#2623)Allen Byrne2023-04-0313-73/+90
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* Update java logger version (#2643)Allen Byrne2023-04-0321-30/+33
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* Minor fixes for Subfiling VFD tests (#2633)jhendersonHDF2023-04-032-26/+109
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* Synchronize HDF5 tests with VOL tests (#2628)jhendersonHDF2023-04-0318-236/+799
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