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* [svn-r14123] Description:Quincey Koziol2007-08-286-50/+43
| | | | | | | | | | | | | Move H5Gmove2() to deprecated code section, replacing it with H5Lmove() in the source code. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14122] Description:Quincey Koziol2007-08-2811-207/+207
| | | | | | | | | | | | | Move H5Gmove() to deprecated code section, replacing with H5Lmove() in source files. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14121] Description:Quincey Koziol2007-08-282-5/+5
| | | | | | | Correct a couple of swapped parameters for creating soft links. Tested on: FreeBSD/64 6.2 (liberty)
* [svn-r14120] Description:Quincey Koziol2007-08-2811-221/+224
| | | | | | | | | | | | Move H5Glink2 to deprecated routines section. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14119] Description:Quincey Koziol2007-08-281-1/+1
| | | | | | | Fix typo in FORTRAN wrapper for H5Glink. Tested on: FreeBSD/64 6.2 (liberty) w/FORTRAN
* [svn-r14118] Description:Quincey Koziol2007-08-281-2/+2
| | | | | | | | | Fix inverted link parameters in setup() routine. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Solaris/32 5.10 (linew)
* [svn-r14117] Description:Quincey Koziol2007-08-2819-482/+503
| | | | | | | | | | Move H5Glink() into "deprecated routines" section, replacing internal usage with H5Lcreate_hard/H5Lcreate_soft. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Solaris/32 5.10 (linew)
* [svn-r14116] Description:Quincey Koziol2007-08-281-7/+9
| | | | | | | | Fix error in end_obj() macro to make it safer in situations without enclosing braces. Tested on: Mac OS X/32 10.4.10 (amazon)
* [svn-r14115] Description:Quincey Koziol2007-08-2853-2968/+2863
| | | | | | | | | | | | | | | | | Remove all plain calls to H5Gopen() from source, replacing them with either H5Gopen2(). Add test for H5Gopen1(). Reformatted several pieces of code, to clean them up. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14114] Purpose: Fix a subtle Windows bug in h5unjamScott Wegner2007-08-271-1/+1
| | | | | | | | | Description: In h5unjam.c, there was a call to "open", rather than "HDopen". This isn't a problem on most platforms, as the are equivalent. However, on Windows, we use the HDopen macro to unconditionally set the O_BINARY flag. This is needed to safely seek within a file. Tested: VS2005 on WinXP h5committest (kagiso linew smirom)
* [svn-r14112] Description:Quincey Koziol2007-08-241-11/+18
| | | | | | | Avoid file size queries/comparisons when using core VFD. Tested on: FreeBSD/32 6.2 (duty) w/core VFD
* [svn-r14110] Document MPI-IO compiler problem on tungsten.MuQun Yang2007-08-241-0/+20
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* [svn-r14109] Description:Quincey Koziol2007-08-233-5/+35
| | | | | | | | | Make certain to define the API function and typedef version macros in all situations. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.10 (amazon)
* [svn-r14108] Description:Quincey Koziol2007-08-232-12/+12
| | | | | | | | | | | | Make version macro for typedefs closer to version macro for API functions. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r14104] Description:Quincey Koziol2007-08-2354-1665/+1735
| | | | | | | | | | | | | Pursue calls to H5Gcreate() relentlessly and ruthlessly exterminate them, leaving only a few tame specimens in text files and comments. ;-) Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r14103] A user reported that the files generated from Lex and Yacc in ↵Raymond Lu2007-08-235-230/+257
| | | | | | | the library conflict with his application with Lex and Yacc. To solve the problem of multiple definitions of Lex or Yacc functions or variables, use the -P or -p command option to change the prefix of these functions and variables from yy to H5LTyy. Tested on kagiso, linew, smirom.
* [svn-r14101] Description:Quincey Koziol2007-08-232-4/+3
| | | | | | | | | Change definition of H5E_walk1_t compatibility type to match the H5E_walk_t type in the 1.6.x library. Tested on: Mac OS X/32 10.4.10 (amazon) Too minor to require commit test
* [svn-r14099] Purpose: Fix Windows libtest_cstubdll output directoryScott Wegner2007-08-221-4/+4
| | | | | | | | Description: Previously, the libtest_cstubdll project was creating the DLL in the project directory, rather than the Output directory. This was a simple typo, and not caught previously because past builds had the DLL installed. Cleaning up our batch files will make this easier to catch in the future. Tested: VS2005 on WinXP x64
* [svn-r14098] Description:Quincey Koziol2007-08-213-14/+14
| | | | | | | | Clean up a few remaining API compatibility issues in the H5E API for parallel configurations Tested on: FreeBSD/64 6.2 (liberty) w/parallel
* [svn-r14097] Description:Quincey Koziol2007-08-2121-372/+686
| | | | | | | | | | | | | First real use of API versioning code, H5E routines switched to use new API versioning scheme. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r14096] There're 3 changes in this checkin as below:Raymond Lu2007-08-208-42/+392
| | | | | | | | | | | | | | | | | | 1. In H5Dwrite and H5Dread, let the data buffer point to a fake address if the application passes in an empty buffer. This is mainly for MPIO programs that some processes may not have any data to write or read but still participate the I/O. This solution solves some MPI's problem like the ChaMPIon on tungsten which doesn't support empty buffer. 2. The ChaMPIon on tungsten doesn't support complex derived MPI data type correctly and collective I/O when some processes don't have any data to write or read correctly. Detect the compiler "cmpicc" in the system-specific config file and set the variables for these two cases to false. The PHDF5 library already has set up a way to switch collective chunked I/O to independent under these two cases. 3. A bug fix - During the work of the optimization for compound data I/O, the case for switching collective chunked I/O to independent I/O was leftout. Fixed it by adding I/O caching to it in H5D_multi_chunk_collective_io in H5Dmpio.c. Tested on tungsten, cobalt, and kagiso for parallel; on linew and smirom for serial.
* [svn-r14093] Purpose: Convert Windows projects to VS2005 format and support ↵Scott Wegner2007-08-16277-18741/+93331
| | | | | | | | | | | 64-bit Fortran Description: This checkin is another Windows project cleanup, and also extends our Windows support for 64-bit Fortran. Project files are now in VS2005 format, rather than VS.NET. A couple projects have been renamed to be more descriptive (*cstub rather than *_lib), and project settings make better use of build macros. This will make them much easier to update in the future. Tested: VS2005 on WinXP 32-bit VS2005 on WinXP x64
* [svn-r14086] Description:Quincey Koziol2007-08-142-5/+19
| | | | | | | | | | | | | | Correct error in metadata cache entry logic for free space objects, where a free space header could unpin its entry in the cache, even when the sections for that free space manager were still in the cache and technically holding the header pinned. Fix problem by checking for the section info in the cache before allowing the header to unpin its cache entry. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r14085] Description:Quincey Koziol2007-08-146-34/+66
| | | | | | | | | Refactor H5HF_size() size statistics code for fractal heap to conform to how the rest of the fractal heap routines work. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.10 (amazon)
* [svn-r14084] Description:Quincey Koziol2007-08-141-1/+1
| | | | | | | | | | Change metadata cache protect access from "write" to "read" for the free space header, which follows the same pattern as the fractal heap's use of the metadata cache. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.10 (amazon)
* [svn-r14083] Description:Quincey Koziol2007-08-147-27/+191
| | | | | | | | | | Correct problem with fractal heap's free space size usage gathering routine, which was "poisoning the cache" by loading an incorrectly initialized piece of metadata from the file. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 6.2 (amazon)
* [svn-r14082] Description:Quincey Koziol2007-08-142-2/+161
| | | | | | | | | Fix bug with moving object header messages forward into null messages of exactly the same size and located in an object header chunk with a gap. (Exposed by netCDF-4 test) Tested on: FreeBSD/32 6.2 (duty)
* [svn-r14081] revised it.Albert Cheng2007-08-131-161/+101
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* [svn-r14073] Description:Quincey Koziol2007-08-101-29/+29
| | | | | | | | Re-order several switch statements to match the ordinal numbering of enumerated types. Tested on: None - too simple to require
* [svn-r14071] Pedro Vicente Nunes2007-08-101-1/+1
| | | | | | typo fix in usage message tested: linux
* [svn-r14069] typo fix in usage messagePedro Vicente Nunes2007-08-101-1/+1
| | | | tested: linux
* [svn-r14068] typo fix in usage messagePedro Vicente Nunes2007-08-101-1/+1
| | | | tested: linux
* [svn-r14067] Purpose: Revise usage of H5_HAVE_SIGLONGJMPScott Wegner2007-08-101-1/+3
| | | | | | | | Description: The way I had integrated H5_HAVE_SIGLONGJMP previously, we conditionally removed far more functionality than we needed. As a result, Windows type alignment was lost. This commit localizes the ifdef so it only surrounds the actual call to siglongjmp. This is equivalent to what we've done in the past-- simply comment out the line. Tested: VNET on WinXP
* [svn-r14066] Purpose: Streamline Windows typegen projectsScott Wegner2007-08-1012-150/+134
| | | | | | | Description: Previously the process of generating h5tinit.c, as well as the Fortran type files, was very manual on Windows. For Fortran, the process included opening 4 different solutions, and running 4 different commands from the prompt. I've made things very much more automated, and now only requires only building one project for either C or C/Fortran. Running the commands to generate the file is done automatically. Tested: VS.NET
* [svn-r14065] Second try at checking in the "cork the cache" modification.John Mainzer2007-08-104-34/+14
| | | | | | | | First attempt contained slightly dated versions of the files listed below. Must also note that the mods were tested with h5committest, and two other linux builds.
* [svn-r14064] Implemented function allowing the user to cork the metadata cache.John Mainzer2007-08-109-100/+1868
| | | | Also implemented associated test code.
* [svn-r14061] Purpose: Removing --disable-hsizet flag from configure.Mike McGreevy2007-08-092-71/+30
| | | | | | | Description: This flag causes problems for users and is difficult to support in the library. It has been removed. (see Bug 708). Tested: kagiso, linew
* [svn-r14060] Corrected verifiy to verify.H. Joe Lee2007-08-091-9/+9
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* [svn-r14058] Purpose: Bring Windows h5diff test script up to dateScott Wegner2007-08-091-1/+1
| | | | | | | | Description: One of the h5diff tests changed to check for NaN values-- this checkin updates our Windows script for these changes. Tested: Windows XP
* [svn-r14057] Purpose: Fixes for 64-bit Windows Intel Fortran 9.1Scott Wegner2007-08-09131-17171/+770
| | | | | | | | | | | | Description: We are porting Fortran to 64-bit Windows, and need to make many syntactical changes to bring the code up to date. We now go back to using "!DEC$" rather than "!MS$" in our "ATTRIBUTE" code. Also, the naming conventions for mixed language is inconsistent from 32- to 64- bit Windows. To make up with this, we use the "decorate" flag. We also needed to change the "calling convention" in project settings from "CVF" to "default". Also other minor cleanups on project files. Tested: 32-bit: VS.NET and VS2005 64-bit: VS2005
* [svn-r14056] Purpose: Take advantage of new H5_HAVE_SIGLONGJMP flag in ↵Scott Wegner2007-08-082-14/+4
| | | | | | | | | | | H5detect.c Description: Visual Studio does not have the function siglongjmp. Therefore, we have created a new configure flag H5_HAVE_SIGLONGJMP that tests for this. We use this within H5detect.c. Tested: VS.NET h5committest
* [svn-r14051] Pedro Vicente Nunes2007-08-072-6/+2
| | | | | | Make the compare to itself file test be another due to the recently introduced file with Nans Tested: linux, solaris
* [svn-r14048] Pedro Vicente Nunes2007-08-074-160/+221
| | | | | | Added a dataset with NaN values to the h5diff file generator program and new binary file Tested: linux
* [svn-r14047] Purpose: Adding H5_HAVE_SIGLONGJMP macro to configure.Mike McGreevy2007-08-073-3/+7
| | | | | | | Description: Configure will now detect the presence of the 'siglongjmp' function. If present, the macro H5_HAVE_SIGLONGJMP will be defined in src/H5pubconf.h. Tested: kagiso, smirom, linew
* [svn-r14044] Pedro Vicente Nunes2007-08-071-1/+1
| | | | | | updated the usage message to say the STR option is implemented tested: windows, linux
* [svn-r14043] Purpose: Add new testScott Wegner2007-08-071-0/+6
| | | | | | | | Description: Add new h5import test "teststr" which was added to other platforms this morning. Tested: VS.NET on WinXP
* [svn-r14040] Pedro Vicente Nunes2007-08-071-0/+5
| | | | new files added for h5import str test
* [svn-r14039] Pedro Vicente Nunes2007-08-076-3/+209
| | | | | | | | | | | | | New feature: implementation of h5import conversion of an ASCII plain-text file containing text data The string type H5T_C_S1 is used to define the data (the datum is defined here as one line of text in the text file). The size is set to variable length (H5T_VARIABLE) The space used is a 1D array with as many elements as there are lines in the ASCII file (a line is defined by the inclusion of an end of line character, ASCII number 10). A first traversal of the input text file must be made to determine the number of lines in the file and thus the dimensionality of the dataset. New test to the test script added text input files and teststr.h5 for h5dump to compare added Tested: windows, linux, solaris
* [svn-r14036] Purpose: Fix Windows debug DLL naming schemeScott Wegner2007-08-0327-50/+50
| | | | | | | | Description: At a previous seminar, it was brought up that the naming scheme for Windows debug DLL is inconsistent. Specifically, some use *ddll, while others use *dlld. *dlld is more widely-used, so we decided this is "correct". This changes others to use this scheme, and adapts other projects / install scripts / documentation. Tested: Visual Studio .NET on WinXP
* [svn-r14034] Purpose: Remove forced symbol "gethostname@8" from Windows projectsScott Wegner2007-08-0273-930/+38
| | | | | | | | | | | | Description: Previously, we needed to force symbol definition "gethostname@8" for compatibility with old versions of Visual Studio. It appears that Visual Studio no longer requires this, so we remove it. This makes the build process on 64-bit much smoother. Also minor updates to main documentation, command-line documentation, and removed codewarrior and INTEL docs. Tested: VS.NET VS2005 chkmanifest
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