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* [svn-r28959] merge from trunk.Mohamad Chaarawi2016-01-2272-730/+1225
|\ | | | | | | renaming metadata dxpl properties.
| * [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-2149-534/+536
| | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
| * [svn-r28949] HDFFV-9660: add an option to enable threadsafe feature in cmakehdf5Albert Cheng2016-01-211-0/+10
| | | | | | | | | | | | | | Tested: platypus. There are still something strange messages during the configure step. Waiting for Allen to response.
| * [svn-r28936] spelling correctionScot Breitenfeld2016-01-201-2/+2
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| * [svn-r28918] Description:Quincey Koziol2016-01-152-2/+2
| | | | | | | | | | | | | | | | | | I missed changes to a couple of expected error output files with the last checkin. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r28916] Description:Quincey Koziol2016-01-1513-251/+346
| | | | | | | | | | | | | | | | Normalize against incoming changes from the phdf5_metadata_opt branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r28906] Description:Binh-Minh Ribler2016-01-152-0/+2
| | | | | | | | Added c++/test/tarray.cpp.
| * [svn-r28905] Purpose: Fix user reported problemBinh-Minh Ribler2016-01-159-57/+407
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: User Adam Rosenberger reported a failure when using the member function AbstractDs::getArrayType(). This problem was caused by missing initialization of the ArrayType's members in some cases. Solution: - Added ArrayType::setArrayInfo() to retrieve rank and dimensions of an array and store them in memory for easy access. - Re-factored a few functions to use the new function. - We'll give him 1.8.16 patch Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
| * [svn-r28902] Remove 3 files in autom4te.cache from MANIFEST. They are ↵Larry Knox2016-01-141-3/+0
| | | | | | | | generated by autogen.sh and were inadvertently added along with configure and Makefile.in files but are not checked in and should not be installed. Furthermore they are not generated on all systems by autogen.sh and cause chkmanifest to fail when run be release scripts.
| * [svn-r28894] Description:Quincey Koziol2016-01-1414-219/+214
| | | | | | | | | | | | | | | | Normalize against changes on phdf5_metadata_opt branch to trunk Tested on: MacoSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r28885] Change TOOLTEST5 to TOOLTEST3, which does not post-process the ↵Allen Byrne2016-01-131-1/+1
| | | | | | | | files.
| * [svn-r28881] Merged r28880 from revise_chunks. Adds a script to flip maint mode.Dana Robinson2016-01-132-0/+84
| | | | | | | | Tested on: linux VM
| * [svn-r28878] Removed some duplicated comment lines from configure.ac.Dana Robinson2016-01-131-3/+0
| | | | | | | | Tested on: N/A
| * [svn-r28868] HDFFV-9639: autotools script updateAllen Byrne2016-01-121-30/+35
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| * [svn-r28866] HDFFV-9639: new filesAllen Byrne2016-01-121-0/+2
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| * [svn-r28865] HDFFV-9639: Fix double-free error by setting freed var to NULL.Allen Byrne2016-01-124-44/+91
| | | | | | | | | | Verified issue with "h5dump tgroup.h5 non_existing.h5" Applied patch and retested.
| * [svn-r28861] Minor warning format string fix (HDFFV-9640).Dana Robinson2016-01-122-3/+3
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools parallel only (MPICH 3.1.4)
| * [svn-r28853] HDFFV-9649: cmakehdf5 needs a proper implementation to verify ↵Albert Cheng2016-01-111-2/+11
| | | | | | | | | | | | | | | | | | the installation images created for Mac OSX. The current implementation for Mac OSX platform is a kludge that sometimes left behind mounted volumes. Temporary screen out the checking of installtion_check step (so that daily test may pass). Tested: by hand running cmakehdf5 in platypus and osx1010test.
* | [svn-r28919] Description:Quincey Koziol2016-01-152-2/+2
| | | | | | | | | | | | | | | | | | I missed changes to a couple of expected error output files with the last checkin. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* | [svn-r28915] Description:Quincey Koziol2016-01-1515-224/+278
| | | | | | | | | | | | | | | | Review revisions on the way to the trunk. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* | [svn-r28895] Description:Quincey Koziol2016-01-148-185/+94
| | | | | | | | | | | | | | | | Minor code tweaks and cleanups during review. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5comittest not required on this branch)
* | [svn-r28851] merge from trunk.Mohamad Chaarawi2016-01-1197-1666/+5399
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| * [svn-r28843] Description:Quincey Koziol2016-01-081-1/+1
| | | | | | | | | | | | | | | | Bump number of records for random update test again. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r28841] indentations were messed up by some previous commit.Albert Cheng2016-01-071-111/+111
| | | | | | | | | | | | Restored them to more readable spacing. No code change. Test: visual inspection.
| * [svn-r28837] Merged r28836 from revise_chunks (tarray.c fix).Dana Robinson2016-01-071-4/+4
| | | | | | | | Tested on ostrich w/ gcc
| * [svn-r28832] Description:Quincey Koziol2016-01-061-1/+3
| | | | | | | | | | | | | | | | | | Reset driver info message when superblock load fails. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial Linux/64 2.6.x (mayll) w/serial
| * [svn-r28828] Description:Quincey Koziol2016-01-061-2/+2
| | | | | | | | | | | | | | | | | | | | Switch filter plugin to use H5allocate_memory and H5free_memory instead of malloc and free. Tested on: Linux/32 2.6.x (jam) w/serial Linux/64 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
| * [svn-r28824] Description:Quincey Koziol2016-01-061-3/+0
| | | | | | | | | | | | | | Reduce asserts on buffer alignment. Tested on: Linux/32 & Linux/64 2.6.x (jam & myall) w/serial
| * [svn-r28821] Merge of r28816 from revise_chunks (tarray.c cleanup).Dana Robinson2016-01-061-84/+84
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * [svn-r28819] Description:Quincey Koziol2016-01-061-14/+22
| | | | | | | | | | | | | | | | | | Align internal memory sanity checking buffer, to avoid problems when optimization is enabled. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial
| * [svn-r28815] Description:Quincey Koziol2016-01-062-0/+26
| | | | | | | | | | | | | | | | | | | | Add internal routine to sanity check all blocks allocated through H5MM interface. Tested on: Linux/32 2.6.x (jam) w/serial Linux/64 2.6.x (mayll) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
| * [svn-r28811] Description:Quincey Koziol2016-01-063-10/+10
| | | | | | | | | | | | | | | | | | Switch v2 B-tree min & max records to be void*'s to be cleaner and generate less warnings. Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
| * [svn-r28802] Description:Quincey Koziol2016-01-051-3/+3
| | | | | | | | | | | | | | Correct another H5MM_free => H5MM_xfree Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel
| * [svn-r28800] Description:Quincey Koziol2016-01-052-6/+6
| | | | | | | | | | | | | | Correct H5MM_free => H5MM_xfree Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel
| * [svn-r28798] Description:Quincey Koziol2016-01-053-2/+5
| | | | | | | | | | | | | | | | Add missing H5MMprivate.h header file Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
| * [svn-r28797] Description:Quincey Koziol2016-01-059-64/+54
| | | | | | | | | | | | | | | | Clean up another round of memory allocation mis-matches. Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
| * [svn-r28795] Description:Quincey Koziol2016-01-052-3/+8
| | | | | | | | | | | | | | | | Clean up more memory allocation mis-matches. Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
| * [svn-r28792] Added cleanup for new test files to tfile.c.Dana Robinson2016-01-041-0/+2
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * [svn-r28790] Description:Quincey Koziol2016-01-041-2/+2
| | | | | | | | | | | | | | | | Correct non-portable 'SIZE_T_MAX' to 'SIZET_MAX'. Tested on: Linux/32 2.6.x (jam) w/default compilers (h5committest forthcoming)
| * [svn-r28788] Added extern C block to H5Epubgen.h (via bin/make_err).Dana Robinson2016-01-041-0/+12
| | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
| * [svn-r28777] Description:Quincey Koziol2016-01-0312-48/+397
| | | | | | | | | | | | | | | | | | | | Add --enable-memory-alloc-sanity-check option to configure, to track and sanity check memory allocations within the library. This is orthogonal to the --enable-using-memchecker option and can be used with/without it. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r28773] Description:Quincey Koziol2016-01-031-1/+13
| | | | | | | | | | | | | | | | | | Clear memory for shared message info when "deferring" and using memory checker, so valgrind doesn't whine. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r28769] Description:Quincey Koziol2016-01-033-4/+8
| | | | | | | | | | | | | | | | More memory cleanups and leak elimination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r28765] Description:Quincey Koziol2016-01-021-1/+1
| | | | | | | | | | | | | | | | | | Bump the nunmber of v2 B-tree records for the random 4-level B-tree update test by another 25,000 records. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (Too minor to require h5committest)
| * [svn-r28761] Description:Quincey Koziol2016-01-0117-122/+482
| | | | | | | | | | | | | | | | | | | | | | | | Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree in the library and tests (and use of H5free_memory and H5Dvlen_reclaim). Also make H5Ocopy use a private version of H5Lexists, which doesn't internally throw (and suppress) errors when an object (or the path to it) isn't found in the destination. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r28759] Description:Quincey Koziol2015-12-311-1/+1
| | | | | | | | | | | | | | | | Bump number of records for level 4 update test, to cut down on number of random failures. Tested on: None - trivial
| * [svn-r28756] Description:Quincey Koziol2015-12-302-21/+29
| | | | | | | | | | | | | | | | Minor code neatening and cleanups (same as r28755) on revise_chunks branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (Too minor for h5committest)
| * [svn-r28748] Description:Quincey Koziol2015-12-301-1/+1
| | | | | | | | | | | | | | | | | | Bump number of records for level 4 B-tree test, so that it's more likely to always get to level 4. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r28742] Description:Quincey Koziol2015-12-2912-377/+3089
| | | | | | | | | | | | | | | | | | Add 'update' operation to v2 B-trees, which will insert a new record, or modify an existing one, depending on if the record exists or not. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r28730] Snapshot version 1.9 release 233HDF Tester2015-12-286-7/+7
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