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* TRILABS: Merge CMake changes from developAllen Byrne2018-11-079-110/+130
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2018-11-078-40/+1307
|\ | | | | | | | | | | | | * commit '91771bdf4d6c2ddcdbc127ee2f9d29525d490757': Updated new API functions Description: - Addressed additional review comments - Moved the test function test_get_chunk_info from dsets.c to chunk_info.c because chunk_info.c was created for the purpose of testing chunk information. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test) Updated new API functions Description: - Per Vailin's review, revised H5Dget_chunk_info_by_coord to handle non-existing chunk and H5Dget_num_chunks and H5Dget_chunk_info to handle dataset with no data. - Addressed other review comments - Note that additional tests will be added as we need to send users these functions asap for feedback. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test) New API functions Description: Added functions to query chunk information:
| * Merge pull request #1306 in HDFFV/hdf5 from ↵Binh-Minh Ribler2018-11-078-40/+1307
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_1_10_bmr:hdf5_1_10 to hdf5_1_10 Merged now to create tar ball today for user asap. * commit 'a1a79203b8027631061cb626a5efdd37268752c2': Updated new API functions Description: - Addressed additional review comments - Moved the test function test_get_chunk_info from dsets.c to chunk_info.c because chunk_info.c was created for the purpose of testing chunk information. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test) Updated new API functions Description: - Per Vailin's review, revised H5Dget_chunk_info_by_coord to handle non-existing chunk and H5Dget_num_chunks and H5Dget_chunk_info to handle dataset with no data. - Addressed other review comments - Note that additional tests will be added as we need to send users these functions asap for feedback. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test) New API functions Description: Added functions to query chunk information:
| | * Updated new API functionsBinh-Minh Ribler2018-11-064-64/+432
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Addressed additional review comments - Moved the test function test_get_chunk_info from dsets.c to chunk_info.c because chunk_info.c was created for the purpose of testing chunk information. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
| | * Updated new API functionsBinh-Minh Ribler2018-11-054-87/+239
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Per Vailin's review, revised H5Dget_chunk_info_by_coord to handle non-existing chunk and H5Dget_num_chunks and H5Dget_chunk_info to handle dataset with no data. - Addressed other review comments - Note that additional tests will be added as we need to send users these functions asap for feedback. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
| | * Merge branch 'hdf5_1_10' of ↵Binh-Minh Ribler2018-10-290-0/+0
| | |\ | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_1_10_bmr into hdf5_1_10
| | * | New API functionsBinh-Minh Ribler2018-10-295-1/+748
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Added functions to query chunk information: H5Dget_num_chunks(dset_id, fspace_id, *nchunks) Gets the number of written chunks that intersect with the given dataspace. However, in this version, the intersection is not yet completed. Thus, the number of all written chunks will be returned. H5Dget_chunk_info_by_coord(dset_id, *coord, *filter_mask, *addr, *size) Given a chunk's coordinates, returns the chunk's filter, address, and size. H5Dget_chunk_info(dset_id, fspace_id, index, *coord, *filter_mask, *addr, *size) Given a chunk's index, returns the chunk's coordinates, filter, address, and size. The chunk belongs to a set of chunks that have nonempty intersection with the specified dataspace. However, in this version, the intersection is not yet completed, and the index is of all the written chunks. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
* | | | Correct dependency of ext-libsAllen Byrne2018-11-061-6/+6
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* | | Merge pull request #1307 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2018-10-2915-49/+95
|\ \ \ | |_|/ |/| | | | | | | | | | | | | | | | | hdf5_1_10 * commit '81b2943b6fc01b52de2048d9503d524b2780112b': Fix typo in whitespace area Merge CMake changes from develop Improved cross-compiling and toolchains
| * | Fix typo in whitespace areaAllen Byrne2018-10-291-1/+1
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2018-10-291-40/+40
| |\ \ | |/ / |/| | | | | | | | * commit 'b81adf00bcf45f4bce1c6f1ef8ee6c703e40b945': Trial commit Description: Just committing some typo fix to see whether my changes can be merged successfully to this branch Platforms tested: Linux/64 (jelly)
* | | Merge pull request #1304 in HDFFV/hdf5 from ↵Binh-Minh Ribler2018-10-281-40/+40
|\ \ \ | | |/ | |/| | | | | | | | | | | | | ~BMRIBLER/hdf5_1_10_bmr:hdf5_1_10 to hdf5_1_10 * commit '202d7403282230e2071412237ac7ba86ccb7f3db': Trial commit Description: Just committing some typo fix to see whether my changes can be merged successfully to this branch Platforms tested: Linux/64 (jelly)
| * | Trial commitBinh-Minh Ribler2018-10-261-40/+40
|/ / | | | | | | | | | | | | | | Description: Just committing some typo fix to see whether my changes can be merged successfully to this branch Platforms tested: Linux/64 (jelly)
| * Merge CMake changes from developAllen Byrne2018-10-2314-48/+94
|/ | | Improved cross-compiling and toolchains
* Merge pull request #1279 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:hdf5_1_10 ↵Allen Byrne2018-10-0414-162/+263
|\ | | | | | | | | | | | | | | to hdf5_1_10 * commit 'a9e9cc29184b3b19d1161246264d722d731b5ec2': Fix typos and examples versions HDFFV-10575, 10332, 10531, 10594 and TRILAB-21
| * Fix typos and examples versionsAllen Byrne2018-10-043-3/+3
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| * HDFFV-10575, 10332, 10531, 10594 and TRILAB-21Allen Byrne2018-10-0412-160/+261
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* Merge pull request #1259 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2018-09-2719-842/+879
|\ | | | | | | | | | | | | hdf5_1_10 * commit '8f103a935be942a4240da9e57a0f67504588948a': HDFFV-10594, 10332, 10531
| * HDFFV-10594, 10332, 10531Allen Byrne2018-09-2619-842/+879
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* Merge pull request #1249 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2018-09-201-6/+6
|\ | | | | | | | | | | | | hdf5_1_10 * commit 'f5aafbc87a59313f07eb7611b259cb0d1f68c867': Fix URL
| * Fix URLAllen Byrne2018-09-181-6/+6
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* Merge pull request #1239 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2018-09-102-477/+680
|\ | | | | | | | | | | | | hdf5_1_10 * commit '3110fd53c0b072e6be250235061a6349921765e9': Add contents of HDF5 1.10.3 RELEASE.txt to HISTORY-1_10.txt and update RELEASE.txt for continuing development.
| * Add contents of HDF5 1.10.3 RELEASE.txt to HISTORY-1_10.txt and updateLarry Knox2018-09-102-477/+680
| | | | | | | | RELEASE.txt for continuing development.
* | Merge pull request #1238 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:hdf5_1_10 ↵Allen Byrne2018-09-104-52/+97
|\ \ | |/ |/| | | | | | | | | to hdf5_1_10 * commit '822f5f12d5548e8dcdda25e92c80e06755f6ad52': Add notes about unsupported options
| * Add notes about unsupported optionsAllen Byrne2018-09-104-52/+97
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* Merge pull request #1234 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2018-09-069-18/+18
|\ | | | | | | | | | | | | hdf5_1_10 * commit '20712bef862cec627e046b712ebe5777b804c97c': Update version
| * Update versionLarry Knox2018-09-059-18/+18
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* Merge pull request #1231 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Base_1_10_4Allen Byrne2018-09-016-44/+36
|\ | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'e1f4d0c5d2bae6eaf5b347cea17c58522d62ca92': HDFFV-10568 fix hdf5_java library dependency Fix Java library location for testing Java groups example fix
| * HDFFV-10568 fix hdf5_java library dependencyAllen Byrne2018-09-017-8/+18
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| * Fix Java library location for testingAllen Byrne2018-08-318-23/+8
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| * Java groups example fixAllen Byrne2018-08-311-23/+20
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| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2018-08-288-18/+270
| |\ | |/ |/| | | | | * commit '2ee65646c3afb31194864d36a20817c44b42e677': Merge pull request #1224 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to develop
* | Merge pull request #1227 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2018-08-2825-2835/+2332
|\ \ | |/ | | | | | | | | | | hdf5_1_10 * commit 'd8ec4df92880d98907b12af8fc9fff86e0631270': Update system commands with HD prefix and whitespace
| * Update system commands with HD prefix and whitespaceAllen Byrne2018-08-2825-2835/+2332
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* | Merge pull request #1225 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2018-08-288-18/+270
|\ \ | |/ |/| | | | | | | | | hdf5_1_10 * commit 'f4f2e83d2233699aaf32f2e7f715504b43542d42': Merge pull request #1224 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to develop
| * Merge pull request #1224 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developLarry Knox2018-08-288-18/+270
|/ | | | | | | | * commit '763b95c6b0f027025a5a5bfb203b77317ffa2368': Update RELEASE.txt with suggested changes Update MANIFEST file for new t_coll_md_read.c file Remove now-unused local variable Add fix for HDFFV-10501
* Merge pull request #1223 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Larry Knox2018-08-249-69/+194
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '9e466086f49e6e36b2dc71c0e6e94c01368d7d00': Disable failing tests because of execution issue Add testfiles to data copy Same changes needed for examples as test Correct name of test jar Only remove test jars Remove obsolete var Correct osx installer extension revert build install change for DT Merge CMake and Java OSX changes from develop
| * Disable failing tests because of execution issueAllen Byrne2018-08-241-18/+20
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| * Add testfiles to data copyAllen Byrne2018-08-231-0/+3
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| * Same changes needed for examples as testAllen Byrne2018-08-234-40/+136
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| * Correct name of test jarAllen Byrne2018-08-231-2/+2
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| * Only remove test jarsAllen Byrne2018-08-231-4/+33
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| * Remove obsolete varAllen Byrne2018-08-231-1/+1
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| * Correct osx installer extensionAllen Byrne2018-08-231-1/+1
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| * revert build install change for DTAllen Byrne2018-08-231-75/+74
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| * Merge CMake and Java OSX changes from developAllen Byrne2018-08-234-83/+79
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* | Merge pull request #1221 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2018-08-236-6/+6
|\ \ | |/ |/| | | | | | | | | hdf5_1_10 * commit '4393a79e966a946cd7682e4177cbfeacf68e4a92': Change prefix in example scripts to relative path to bin. This was done for 1.8, and works wherever installed without the need to replace the original prefix.
| * Change prefix in example scripts to relative path to bin. This was doneLarry Knox2018-08-236-6/+6
|/ | | | | for 1.8, and works wherever installed without the need to replace the original prefix.
* Merge pull request #1216 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:hdf5_1_10 ↵Allen Byrne2018-08-2116-60/+104
|\ | | | | | | | | | | | | to hdf5_1_10 * commit '3537a81e35b64903bcafd92a411cd1ca02ce4f2b': HDFFV-10536 Convert iterator callbacks from global to stack var
| * HDFFV-10536 Convert iterator callbacks from global to stack varAllen Byrne2018-08-2116-60/+104
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