| Commit message (Collapse) | Author | Age | Files | Lines |
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* Fixes a stack overflow in the h5dump test generator
The opaque type size was declared to be the size of the "buffer of two
opaque elements", causing a memcpy call in H5Dwrite to read outside
the buffer, dumping garbage into the file.
Note that this only affected the test generator and not h5dump itself.
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Fixes warnings when the deflate filter is not built
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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This will be reverted if it causes problems
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* Removes the small perf tool
This tool doesn't really do anything special and installed, which
conflicts with gnu's perf tool.
* Adds suggestions from code review
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Taken directly from GitHub's suggested CoC document. We may modify this in the future.
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* Add utility JNI function for 1.10 style references
* Clarify text
* Correct signature
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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Co-authored-by: vchoi <vchoi@jelly.ad.hdfgroup.org>
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* Eliminate unnecessary error output
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Fix for a tools compile issue when deprecated symbols are disabled
Introduced in #1811, also uses VOL token instead of addr
* Fix for similar compile issues in java when deprecated symbols are
disabled.
* Committing clang-format changes
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* H5Oflush causes H5Fclose to trigger an assertion failure in metadata cache for parallel. This commit makes sure H5Oflush fails for parallel until this problem is solved in the future.
* Committing clang-format changes
* Changed the use of H5F_get_driver_id to H5F_HAS_FEATURE.
Co-authored-by: songyulu <songyulu@jelly.ad.hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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LLONG_MAX and ULLONG_MAX are defined in limits.h in C99. SIZET_MAX
should be SIZE_MAX, which has been around forever. SSIZET_MAX should
be SSIZE_MAX, which is defined whereever ssize_t is found. I've kept
the definition for SSIZE_MAX (renamed from SSIZET_MAX) for platforms
where ssize_T is not present (e.g., Windows).
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* Fixes for warnings identified by MSVC
* Committing clang-format changes
* Moves the casts in H5Binternal.c to the other side
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Rework java vl check in read/write. Handle old refs in h5dump
* Committing clang-format changes
* Java changes allow default VL reads
* Fix JNI utility for old refs
* HDFFV-11310 - implement vlen read/write for atomic types.
* format check fix
* Mostly format fixes
* More format issues
* Two format changes
* Use JNI names for sizeof
* format change
* fix size typo
* Change to older method to initialize list
* remove unused var
* format fix
* switch writeVL functions to use datatype instead of java type
* Add VL option to generic read/write check
* Correct function name typo
* Add JIRA issue
* Correct note to match change in code.
* HDFFV-11318 add VL references as byte arrays
* Add release note and format changes
* Another format update
* Fix unreleased allocations
* Fix format
* format correction
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Initial implementation for supporting UnifyFS in HDF5 with MPI_File_sync after write
* Committing clang-format changes
* Fix format
* Fix env variable and return value check
* Fix flag retrieve
* Fix issues with getting/setting the flag
* Fix merge conflicts
* Update
* Committing clang-format changes
* Update based on suggestions
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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The signal-to-noise ratio of the higher warning level is very low
and the noise obscures things we should fix
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* Minor clang warning fixes in src and test
* Fixes clang warnings in high-level library
* clang format-nonliteral warning fixes
* Committing clang-format changes
* Fixed int -> float clang cast warnings in h5diff
* Quiets some warnings in flex/bison generated code
* Suppress overlong string warning for libinfo on clang
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Fixes for production mode gcc warnings
With the strict-overflow changes, this brings the number of warnings
in the C library w/ gcc 12 to zero.
* Fix typo
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Fixes sign-conversion warnings w/ clang 14
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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Both Autotools and CMake
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* Adds format attribute to (s|p)io_perf code
* Added gcc format attribute to additional test code
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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Will help keep the drivernames and driver_idx enum in sync.
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Fix Doxygen warnings and cosmetics
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(#1861)
* Convert assertion on (possibly corrupt) file contents to normal error check
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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GitHub issue #732 claims that mallocing a particular buffer can
trigger undefined behavior and that callocing the buffer fixes
the issue.
I did not confirm this, but the fix is trivial and better anyway.
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* Add PDFs
* Update RFC table
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Very new versions of Autoconf complain about our Java macros. Since they
work well enough and there is no obvious upgrade path, we're suppressing
the category for now.
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Previous messages were numbered, which was a maintenance burden,
and non-specific
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When the filename was flipped from being a static array to being
dynamically allocated, the sizeof(filename) call wasn't updated.
This always returns the size of the pointer, truncating the
filename.
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* Add doxygen for high level modules.
* Committing clang-format changes
* Correct spelling based on spelling check.
* Committing clang-format changes
Co-authored-by: vchoi <vchoi@jelly.ad.hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Adds a -Werror debug Autotools test and updates build modes
* Un-excludes the workflow files
* Strip out -Werror from CFLAGS when running configure tests
This causes spurious test failures when the configuration test
programs raise warnings.
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The autoupdate script identified some cruft that was unchanged
in the comments
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Ubuntu 22.04 complains about AC_HAVE_LIBRARY being deprecated. This
updates the macro to AC_CHECK_LIB, where the specified function
is GetUserName().
This change only affects MinGW
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* Sets build mode correctly w/ Autotools
* Updates GitHub gcc and installs OpenMPI
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(#1828)
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