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* [svn-r6574] Elena Pourmal2003-04-022-0/+226
| | | | | | | | | | | | | | Purpose: Maintenance Description: New fortran APIs h5pset_fapl_multi and h5pget_fapl_multi have been added along with the new tests. Solution: Platforms tested: burrwhite with PGI compilers, arabica and modi4 with --enable-parallel Misc. update:
* [svn-r6573] Elena Pourmal2003-04-027-8/+567
| | | | | | | | | | | | | | Purpose: Maintenance Description: New fortran APIs h5pset_fapl_multi and h5pget_fapl_multi have been added Solution: Platforms tested: burrwhite with PGI compilers, arabica and modi4 with --enable-parallel Misc. update:
* [svn-r6572] Purpose:Albert Cheng2003-04-021-6/+5
| | | | | | | | | | | | | | | | | bug fix. Description: It checked on the CVSROOT setting even when no cvs is needed. Solution: Moved the verification inside the checkout code so that the CVS settings are checked when it is needed. Platforms tested: Eirene--this is invoked by bin/runtest. Platform tests do not apply here. Misc. update:
* [svn-r6570] Frank Baker2003-04-021-42/+406
| | | | | | | | | | | | | | | | Purpose: New feature: Fill value and storage space allocation changes Description: Modified the following functions: H5Pset_fill_value H5Pget_fill_value Added the following functions: H5Pfill_value_defined H5Pset_fill_time H5Pget_fill_time H5Pset_alloc_time H5Pget_alloc_time Platforms tested: Safari, IE 5
* [svn-r6569] Frank Baker2003-04-021-34/+138
| | | | | | | | | | | | | | | | | | Purpose: New filter functionality Rename section to reflect filters rather than strictly compression Description: "Compression Interface" --> "Filter and Compression Interface" Renamed section as "Filter and Compression Interface". Extended introductory paragraphs to BRIEFLY describe filter pipeline. Edit H5Zregister to speak from point of view of filters rather than compression only. Add H5Zunregister. Add H5Zfilter_avail. Platforms tested: Safari, IE 5
* [svn-r6568] Purpose:Albert Cheng2003-04-021-0/+4
| | | | | | | | | | | | Updated. Description: Solution: Platforms tested: Misc. update:
* [svn-r6566] Frank Baker2003-04-021-42/+129
| | | | | | | | | | | Purpose: New feature -- Fill value and storage space allocation changes Description: Added H5Dget_space_status Modified H5Dcreate and H5Dread to discuss Also, copy and readability edits in H5Dcreate, H5Dread, and H5Dwrite Platforms tested: IE 6, Safari
* [svn-r6563] Purpose:Pedro Vicente Nunes2003-04-028-734/+502
| | | | | | | | | | | | | | | | | | | added test script for h5diff code cleaning for alpha release makefile now generates the h5difftst.c program that generates 2 .h5 files for testing Description: the .sh script runs several runs of h5diff and compares the output with a predifined output located in /tools/testfiles (.txt files) righ now it has only one test Solution: Platforms tested: linux (other platforms later , ok !? ) Misc. update:
* [svn-r6562] Purpose:Pedro Vicente Nunes2003-04-021-0/+5
| | | | | | | | | | | | | | | added test files for h5diff Description: 2 binary hdf5 files, generated by h5difftst.c located in /tools/h5diff 1 of several text files to be added , that have a predifined h5diff output , to be compared with the output of the program rum by testh5diff.sh Solution: Platforms tested: Misc. update:
* [svn-r6561] Purpose:Albert Cheng2003-04-021-0/+2
| | | | | | | | | Updated with the two newly added configure files. Platforms tested: bin/chkmanifest succeeded. Misc. update:
* [svn-r6560] Purpose:Albert Cheng2003-04-022-0/+136
| | | | | | | | | | | | | | | | Feature (bug fix) Description: Added a new configure file specifically for the IA64 platform in which ecc and efc are the default compilers. Also added all the Fortran special setup in the fortran version Platforms tested: no h5committest since this is a IA64 platform stuff. Tested in Titan. Misc. update: MANIFEST Updated.
* [svn-r6559] Purpose:Bill Wendling2003-04-011-11/+13
| | | | | | | | | | | | Update Description: Missed this file when updating copyright statements. Platforms tested: None (comment change) Misc. update:
* [svn-r6558] Purpose:Bill Wendling2003-04-011-1/+1
| | | | | | | | | | | | | | | Bug Fix... Description: The previous bug was in the _free function as well Solution: Used the correct structure Platforms tested: Modi4 Misc. update:
* [svn-r6557] Purpose:Bill Wendling2003-04-011-1/+1
| | | | | | | | | | | | | | | Bug Fix Description: Was using the wrong pointer into a structure... Solution: Used the correct pointer to get the file_id... Platforms tested: Modi4 Misc. update:
* [svn-r6556] Purpose:Bill Wendling2003-04-015-72/+160
| | | | | | | | | | | | | | | | | | | Update & Bug Fix Description: The "free" protocol was missing. Added that to the server side. When doing a "create" of a file (with no other data structures created), the freespace in the file wasn't being reclaimed. Solution: After adding the free protocol, we put the burden of running through the FD_free function on the SAP instead of each client. Platforms tested: Linux Misc. update:
* [svn-r6555] Purpose:MuQun Yang2003-04-011-0/+5
| | | | | | | | | | | | Add a little description of szip support. More needs to be added. Description: Solution: Platforms tested: Doc. file, no needs to test. Misc. update:
* [svn-r6554] Purpose:MuQun Yang2003-04-011-0/+1
| | | | | | | | | | | | Adding new code name (H5Zszip.c) to MANIFEST Description: Solution: Platforms tested: Misc. update:
* [svn-r6553] Purpose:MuQun Yang2003-04-011-26/+406
| | | | | | | | | | | | | | | | | | | | | | | | | | | To add tests for szip compression in HDF5 Description: Three tests were added: 1) szip filter itself 3) szip + shuffle + fletch32 2) fletch32 + shuffle + szip Solution: Since H5Dget_storagesize returns 0(Quincey can fix it or it may be gone), I create another function called test_internal_filter_szip, which is the almost the same as test_internal_filter but comments out H5Dget_storage_size function. Platforms tested: Since there are changes of configure.in and configure,I didn't use h5committest. I tested with four platforms. 1) Linux 2.4 (eirene) 2) Solaris 2.7(arabic 3) windows 2000(VS 6.0) 4) SGI IRIX6.5-64(modi4) For test 1)-3), only basic C tests were done For modi4 test, I tested 64-bit C,parallel and fortran. All tests passed, except a warning message from szip library when checksum is used in some order, which doesn't cause any real problems. Misc. update:
* [svn-r6552] Purpose:MuQun Yang2003-04-011-0/+122
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | To support szip compression in HDF5 Description: This is where szip filter function is located. Solution: The filter function composes of "encode" and "decode" part, which is similar as deflate filter. One critical difference is: when szip decompresses the data, it needs to know the buffer size to hold the decompressed data in advance. Currently it's hard for HDF5 lib to give the buffer size easily. So to avoid this problem, in each chunk, we add a small header to hold the buffer size of each chunk. The code will use UINT32 ENCODE and UINT32 DECODE to finish this part of work. Platforms tested: Since there are changes of configure.in and configure,I didn't use h5committest. I tested with four platforms. 1) Linux 2.4 (eirene) 2) Solaris 2.7(arabica) 3) windows 2000(VS 6.0) 4) SGI IRIX6.5-64(modi4) For test 1)-3), only basic C tests were done For modi4 test, I tested 64-bit C,parallel and fortran. All tests passed, except a warning message from szip library when checksum is used in some order, which doesn't e any real problems. Misc. update:
* [svn-r6551] Purpose:MuQun Yang2003-04-016-13/+74
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | To support szip compression in HDF5 Description: szip compression support is required by NASA ESDIS. The compression algorithm is good for scientific data. In HDF5, we add another filter function to make szip as a default compression package as we did for gzip(or zlib). In this check-in, a new function called H5Pset_szip was added into H5Pdcpl.c, this function is very similar to H5Pset_deflate. The only difference is SZIP needs four parameters from the user to get the compression done while gzip needs only one. So we pass a pointer to this function instead of an integer number. The description of the four parameters of szip should be in different documents. H5Z.c and other header files were simply modified to have HDF5 know szip. Solution: See the decription Platforms tested: Since there are changes of configure.in and configure,I didn't use h5committest. I tested with four platforms. 1) Linux 2.4 (eirene) 2) Solaris 2.7(arabica) 3) windows 2000(VS 6.0) 4) SGI IRIX6.5-64(modi4) For test 1)-3), only basic C tests were done For modi4 test, I tested 64-bit C,parallel and fortran. All tests passed, except a warning message from szip library when checksum is used in some order, which doesn't cause any real problems. Misc. update:
* [svn-r6550] Purpose:MuQun Yang2003-04-012-4/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | To support szip compression in HDF5 Description: szip compression support is required by NASA ESDIS. The compression algorithm is a good compression algorithm for scientific data. In HDF5, we add another filter function to make szip as a default compression package as we did for gzip(or zlib). H5config.in needs to be regenerated by autoheader for SZIP flags. Solution: A new file called H5Zszip.c will be added in the Makefile.in Flags like: HAVE_FILTER_SZIP should be auto-generated by autoheader. Platforms tested: Since there are changes of configure.in and configure,I didn't use h5committest. I tested with four platforms. 1) Linux 2.4 (eirene) 2) Solaris 2.7(arabica) 3) windows 2000(VS 6.0) 4) SGI IRIX6.5-64(modi4) For test 1)-3), only basic C tests were done For modi4 test, I tested 64-bit C,parallel and fortran. All tests passed, except a warning message from szip library when checksum is used in some order, which doesn't cause any real problems. Misc. update:
* [svn-r6549] Purpose:MuQun Yang2003-04-012-4/+541
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This is the first check-in message related to szip support at HDF5 1.6 release Description: szip compression support is required by NASA ESDIS. The compression algorithm is a good compression algorithm for scientific data. In HDF5, we add another filter function to make szip as a default compression package as we did for gzip(or zlib). Solution: In the configure.in and configure, I handled szip exactly the same as what zlib was built into the HDF5. Currently if you don't specify in the configure command line with: ./configure --with-szlib=/..... Unless you put your szip library in your path,you will build the same HDF5 library like before. Also, I only use static szip library to test with HDF5. Platforms tested: Since there are changes of configure.in and configure,I didn't use h5committest. I tested with four platforms. 1) Linux 2.4 (eirene) 2) Solaris 2.7(arabica) 3) windows 2000(VS 6.0) 4) SGI IRIX6.5-64(modi4) For test 1)-3), only basic C tests were done For modi4 test, I tested 64-bit C,parallel and fortran. ALl tests passed, except a warning message from szip library when checksum is used in some order, which doesn't cause any real problems. Misc. update:
* [svn-r6548] Purpose:Albert Cheng2003-03-311-4/+13
| | | | | | | | | | | | | | | | | | | | | | | | | New Feature Description: Some machine has a different hostname from its official name (e.g., copper is called Cu12) and some machine name are dynamic aliases (e.g., titan is mapped user01 or user02). Some names are cryptic (who could remember hn0? are platinum hosts while user0? are for titan). We had to hardcode those names into the snaptest.cfg file. An ongoing maintenance PAIN. Solution: Added -configname <name> option where "use <name> as hostname in the parsing of the snaptest configure file" Changed RSH code to append the hostname used in the Allhostfile. Now, we need not worry about machine name mapped to a different host and it is much cleaner to match up entries between allhostfile and snaptest.cfg files. Platforms tested: Did not use h5committest which does not cover this code. Tested in eirene, titan, platinum and copper. Misc. update:
* [svn-r6546] Purpose:Bill Wendling2003-03-3173-398/+1005
| | | | | | | | | | | | Update Description: Updated copyright statement in files which hadn't been updated yet. Platforms tested: Linux (Only comment change) Misc. update:
* [svn-r6545] Purpose:Bill Wendling2003-03-316-19/+75
| | | | | | | | | | | | Update Description: Updated copyright Platforms tested: LInux (Comment change only) Misc. update:
* [svn-r6544] Purpose:Bill Wendling2003-03-316-20/+84
| | | | | | | | | | | | Update Description: Update copyright statement Platforms tested: Linux (Comment change only) Misc. update:
* [svn-r6543] Purpose:Bill Wendling2003-03-313-9/+36
| | | | | | | | | | | | Update Description: Updated copyright statement Platforms tested: Linux (only comment change) Misc. update:
* [svn-r6542] Purpose:Bill Wendling2003-03-311-3/+11
| | | | | | | | | | | | Update Description: Updated copyright statement Platforms tested: None needed Misc. update:
* [svn-r6541] Purpose:Bill Wendling2003-03-313-9/+37
| | | | | | | | | | | | Update Description: Updated Copyright statements Platforms tested: None needed... Misc. update:
* [svn-r6540] Purpose:Bill Wendling2003-03-3120-72/+262
| | | | | | | | | | | | Update Description: Updated copyright statement Platforms tested: Linux (Only change in comments...checked if compiles) Misc. update:
* [svn-r6539] Purpose:Bill Wendling2003-03-316-2/+81
| | | | | | | | | | | | Update Description: Updated (and in some cases added) the copyright statement. Platforms tested: Linux (Comment changes...only tested if they compile) Misc. update:
* [svn-r6538] Purpose:Bill Wendling2003-03-3161-321/+836
| | | | | | | | | | | | | Update Description: Updated the Copyright statement Platforms tested: Linux (This change is only in the comments, so I just check that the modules still compile) Misc. update:
* [svn-r6537] Purpose:Bill Wendling2003-03-312-7/+24
| | | | | | | | | | | | Update Description: Updated Copyright statement. Platforms tested: None needed Misc. update:
* [svn-r6536] Purpose:Bill Wendling2003-03-315-11/+57
| | | | | | | | | | | | Updated Copyright Statement Description: Replaced old copyright statement with new one. Platforms tested: No need. Misc. update:
* [svn-r6535] Purpose:Albert Cheng2003-03-311-3/+3
| | | | Updated with new zlib used.
* [svn-r6534] Purpose:Albert Cheng2003-03-311-0/+2
| | | | Updated with AIX configure bug fix.
* [svn-r6532] Purpose:Albert Cheng2003-03-311-1/+2
| | | | | | | | | | | | | | | | | | | | Bug fix Description: test/dtypes failed badly when -O is used. Trying to recompile test/* code without -O did not eliminate the errors. So, the failure is deep in the hdf5 library. Solution: For now, removed '-O' from $PROD_CFLAGS so that enable-production will use no optimization. Need to find out what exactly trigger the errors. Platforms tested: Did not do h5committest because this is an AIX configure change only. Tested it in Copper. Need to test it on other offsite machines. Misc. update: Updated release_docs/RELEASE.
* [svn-r6529] Purpose:Albert Cheng2003-03-291-2/+2
| | | | | | | | | | | | | | Improvement Description: Added a 5 seconds timeout to the PING command so that it can detect host not online quicker. Platforms tested: The three platforms tests do not cover this command. Test it in eirene where it is usually run. Misc. update:
* [svn-r6527] Purpose:Bill Wendling2003-03-277-107/+58
| | | | | | | | | | | | | | | | | | | | | | | Bug Fix & Update Description: FPHDF5 was creating files which didn't have the EOA field in the superblock set correctly. It turns out that the SAP was keeping this information to itself instead of giving it to the client processes. Naughty SAP! Solution: Have the SAP send this information back to the clients so that they can update the superblock as necessary. This now creates a file (with just the root group) that looks correct! Only problem is that there's extra file space being allocated. Also, at program termination, there's an infinite loop... Platforms tested: H5committests (run by hand on burrwhite, arabica, and modi4) Misc. update:
* [svn-r6526] Purpose:Pedro Vicente Nunes2003-03-271-186/+185
| | | | | | | | | | | | | | update Description: clean code , removed empty spaces, tested on solaris Solution: Platforms tested: w2000, linux, solaris Misc. update:
* [svn-r6525] Purpose:Albert Cheng2003-03-271-0/+2
| | | | | | | | | | | | | | | | New test feature Description: Added the VFD_LIST definition to support the "make check-vfd" tests. Platforms tested: h5committested. Since check-vfd is not invoked by default, I went to each machine to invoke them by hand. The target worked fine but there were errors reported from those driver tests. (Those errors were beyond the scope of this make target test.) Misc. update:
* [svn-r6524] Purpose:Albert Cheng2003-03-271-0/+11
| | | | | | | | | | | | | | | | | | | | | | New test feature Description: The various virtual file drivers (multi, family, core, ...) are not tested automatically. One would have to do it by hand by setenv HDF5_DRIVER <driver> and then do gmake check in test/. Solution: Added a new target, check-vfd, which will take the list from $VFD_LIST and run 'make check' with each of its members. Platforms tested: h5committested. Since check-vfd is not invoked by default, I went to each machine to invoke them by hand. The target worked fine but there were errors reported from those driver tests. (Those errors were beyond the scope of this make target test.) Misc. update:
* [svn-r6523] Purpose:Albert Cheng2003-03-261-3/+6
| | | | | | | | | | | | | | | Bug fix. Description: n_test must be inited to 1 when it is for tests within one machine. Undid my previous mistake. Platforms tested: Eirene. Did not do the h5committest because this is a script and if it works in one machine, it most like will work in all Unix platform. Misc. update:
* [svn-r6522] Purpose:Albert Cheng2003-03-261-9/+23
| | | | | | | | | | | | | | | | | | | | | | | new feature and some bug fixes Description: Add a new feature to "skip" some tests. Sometimes, a machine has problem (e.g. titan and sleipnir having AFS problems). Sometimes some feature in a machine is temporary off (e.g., PGI compilers in eirene.) The tests will be reported being SKIPPED which will be reminder to remove the skipping once the problem is fixed. I installed the skipping control in snaptest.cfg rather than in allhostsfile to have a finer control to skip just a subset of the tests of a machine, rather than skipping the all tests of a machine. Bug fixes: fixed the miscounting of number of tests ran. It was reporting one too many. Platforms tested: Only tested in eirene since eirene is the one uses it directly. Misc. update:
* [svn-r6521] Purpose:Pedro Vicente Nunes2003-03-261-296/+766
| | | | | | | | | | | | | | | | update Description: added the new cosequential match algorythm added extra checking of bad input values Platforms tested: w2000, linux Misc. update:
* [svn-r6520] Frank Baker2003-03-241-56/+555
| | | | | | | | | | | | | | | | | | | | | | | Purpose: Adding descriptions of new library features to the RM Description: H5Pset_fapl_log: Added new 'buf_size' parameter. New 'flags' parameter replaced 'verbosity' parameter, requiring new table describing 20 available flags. H5Pset_filter: Added valid 'filter' parameter values. Modified for Fletcher32 EDC filter. H5Pget_filter: Added return value descriptions. H5Pset_layout & H5Pget_layout: Modified for compact datasets. Added the following new functions: H5Pset_fletcher32 H5Pset_edc_check & H5Pget_edc_check H5Pset_filter_callback H5Pset_shuffle Platforms tested: Safari IE 6
* [svn-r6519] Purpose:Quincey Koziol2003-03-226-72/+105
| | | | | | | | | | | | | Bug fix/code cleanup/new feature Description: Fix h5debug to work correctly again, with all the changes over the past few months. Improved and cleaned up debugging output available in h5debug. Platforms tested: FreeBSD 4.7 (sleipnir)
* [svn-r6517] Elena Pourmal2003-03-211-0/+1
| | | | | | | | | | | | | | | Purpose: Bug fix. Description: When I added support for filters, I forgot to add fortan man pages file to the MANIFEST file. When I run chkmanifest, I discovered that there was also a typo ( ./dac/Makefile.in instead of ./doc/Makefile.in ) Solution: added ./doc/html/fortran/h5z_FORTRAN.html and chnages "a" to "o" Platforms tested: arabica with bin/chkmanifest Misc. update:
* [svn-r6516] Purpose:Albert Cheng2003-03-201-1/+1
| | | | | | | | | | | | | | | | | | | | | Bug fix Description: The $RUNPARALLEL is set even when parallel mode is not used. Then it is used to launch some parallel natured test (e.g. example/ph5example) which is not compiled to be so. That created some unnecessary problem in some situation (e.g., Copper cannot "poe a.out" from an AFS space because of the missing AFS token system bug. Solution: Setup RUNPARALLEL only when parallel mode is enabled. Platforms tested: Only tested in Copper since the change applies to IBM machines only. (note that v1.4 will fail by default due to a problem when the default production mode is used. But that is an error not related to this config file) Misc. update:
* [svn-r6514] Purpose:Bill Wendling2003-03-207-147/+146
| | | | | | | | | | | | | | | | | | | | | | | | | Bug fix and Update Description: From Quincey's comments on the code I checked in last night: - In H5F_close call, the "private" processes should call the H5F_flush with the "CLEAR_ONLY" flag. - There's no need for a special case for FPHDF5 in the FD_real_alloc function since FPHDF5 doesn't define an alloc function. - The return type of H5Pset_fapl_fphdf5 should be herr_t instead of hid_t. I don't know how it got that way in the first place. - The variable names for MPI types and the structure typedefs should be switched: H5FP_request/H5FP_request_t to H5FP_request_t/H5FP_request and so on. - In the H5FP.c module, I was commiting the H5FP_request MPI datatype but using the wrong offset field... Platforms tested: Linux...will test on others, but these are mostly FPHDF5 changes. Misc. update:
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