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* [svn-r8218] Purpose:Pedro Vicente Nunes2004-02-236-180/+165
| | | | | | | | | | | | | | | | | | | | | | | | bug fix in H5Zshuffle.c add more tests to h5repack that exposed the bug Description: when creating a dataset with the shuffle filter and duplicating it in a new dataset (file) the call to H5Z_set_local_shuffle failed. this is because the value of cd_nelmts of the filter structure is set to 1 (H5Z_SHUFFLE_TOTAL_NPARMS) when the original dataset is created, but when the new dataset is created there is a checking instruction that fails if the value of cd_nelmts is not 0 (its original value, H5Z_SHUFFLE_USER_NPARMS) Solution: just remove that check condition, since the value of cd_nelmts is not used anyway. if we decide that the value of cd_nelmts is necessary, then the H5O_pline_copy function must be changed to update this value (a different update for each filter) Platforms tested: linux solaris AIX Misc. update:
* [svn-r8216] Snapshot version 1.7 release 18HDF Admin2004-02-226-16/+29
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* [svn-r8214] Purpose:Quincey Koziol2004-02-211-3/+2
| | | | | | | | | | | Bug fix Description: Update threadsafe flags for FreeBSD and allow C++ to be built with threadsafe enabled. Platforms tested: FreeBSD 4.9 (sleipnir) w/C++ & thread-safe
* [svn-r8212] Purpose:Albert Cheng2004-02-181-2/+2
| | | | | | | | | | | | | Bug fix. Description: The -g in H5detect somehow does not work with 64bit mpicc in arabica. Remove it for now for better solution. Platforms tested: no test as the change is trivia. Misc. update:
* [svn-r8210] Frank Baker2004-02-181-4/+4
| | | | | | | | Purpose: Corrected reference to PDF version. Platforms tested: IE 5
* [svn-r8207] Purpose:Albert Cheng2004-02-172-1/+473
| | | | | | | | | | | | | | | | | | | | Bug fix, sort of. Description: Some compilers, e.g., intel compiler, would take a long time to compiler H5detect.c if optimization is on. Solution: Setup special make rules for H5detect to be compiled always with optimization off by using -g. Since H5detect is run once to generate H5Tinit.c, it does not matter that much if it is optimized or not. Platforms tested: "h5committested". Tested in Titan too.
* [svn-r8203] Purpose:Quincey Koziol2004-02-141-15/+39
| | | | | | | | Doc cleanup Description: Correct several grammar problems, as well as clarify a few more things, based on John's feedback.
* [svn-r8201] Purpose:Quincey Koziol2004-02-132-36/+42
| | | | | | | | | | | | | | | | | | Code cleanup/bug fix Description: Fix configuration files to allow 64-bit compilation of the library with a 64-bit version of zlib. Solution: Moved important compiler flags settings from CC macro to CFLAGS macro. Instead of setting CC (F9X, CXX) environment variable for compiling for 64-bit code, users should just set the CFLAGS (FFLAGS, CXXFLAGS) to -q64. Updated INSTALL file to reflect this change. Platforms tested: IBM p690 (copper) w/parallel, FORTRAN, C++, srcdir. Platforms specific - h5committest does not apply.
* [svn-r8199] Purpose:Quincey Koziol2004-02-131-1/+1
| | | | | | | | | | | Bug fix typo Description: Correct typo in last fix... *sigh* Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest - Really! :-)
* [svn-r8198] Purpose:Pedro Vicente Nunes2004-02-121-0/+1
| | | | | | | | | | | | | | | small bug fix Description: a dataset creation property list was not closed Solution: closed it, calling H5Pclose(dcpl); Platforms tested: linux (small fix) Misc. update:
* [svn-r8197] Purpose:Quincey Koziol2004-02-121-1/+1
| | | | | | | | | | | | Bug fix Description: Hack on include paths some more to make srcdir builds work correctly with the [broken] dependency generation from the Intel 7.1 C compiler. Platforms tested: Linux 2.4 (titan) w/srcdir build Too minor to require h5committest
* [svn-r8187] Purpose:Quincey Koziol2004-02-121-1/+1
| | | | | | | | | | | | Bug fix Description: Added directory where actual source code is located to allow broken Intel C 7.1 compiler to generate dependencies correctly. Platforms tested: Linux 2.4 (titan) too minor to need h5committest
* [svn-r8183] Purpose:Pedro Vicente Nunes2004-02-112-0/+0
| | | | | | | | | | | | | removed some harcoded zlib and szip library paths from the h5repack project settings that were accidently left there Description: Solution: Platforms tested: Misc. update:
* [svn-r8181] Purpose:Albert Cheng2004-02-112-132/+132
| | | | | | | | | | | | | | | | | Bug fix. Description: "make check" failed because the macro "$<" is not known to those makes. Solution: Replace that macro with a string name in the form of a more basic macro of "$@". Platforms tested: h5committested (copper used make.) Misc. update:
* [svn-r8178] Frank Baker2004-02-101-1/+1
| | | | | | | | Purpose: Add 2004 to the copyright dates line. Platforms tested: Viewed in vi.
* [svn-r8176] Purpose:Pedro Vicente Nunes2004-02-104-99/+150
| | | | | | | | | | | | | | | | | | | new feature, bug fix, changed function Description: 1) implemented the option that says if the dataset is too small , do not compress it 2) bug fix in the SZIP checking . only apply szip to atomic datatypes 3) made the apply_filters function more compact Solution: Platforms tested: linux AIX solaris Misc. update:
* [svn-r8175] Purpose:Pedro Vicente Nunes2004-02-101-2/+7
| | | | | | | | | | | | same changes that were done for 1.6 regarding CW install Description: Solution: Platforms tested: Misc. update:
* [svn-r8171] Purpose: MaintenanceElena Pourmal2004-02-1012-0/+180
| | | | | | | | | | Description: Copyright notice was missing from the examples files Solution: Added copyright notice Platforms tested: eirene Misc. update:
* [svn-r8166] Purpose:Pedro Vicente Nunes2004-02-091-0/+0
| | | | | | | | | | | | updated the h5repack projects with the new source files Description: Solution: Platforms tested: Misc. update:
* [svn-r8165] Purpose:Pedro Vicente Nunes2004-02-091-0/+0
| | | | | | | | | | | | updated the windows project files for h5repack and h5repacktst with new source files Description: Solution: Platforms tested: Misc. update:
* [svn-r8164] Purpose:Quincey Koziol2004-02-071-3/+2
| | | | | | | | | | | | Test cleanup Description: Move the perl postprocessing step on the .depend file out of the loop over all the files, which should get rid of redundant rescanning of the .depend file. Platforms tested: Linux 2.4 IA64 (titan) too minor to require h5committest
* [svn-r8163] Purpose:Quincey Koziol2004-02-071-0/+12
| | | | | | | | | | | | | Bug fix Description: Add ifdef around most of this file, to protect it from the Intel 7.1 C compiler which seems to have bugs in its -MG flag for creating dependency information. Platforms tested: Linux IA64 (titan) too obscure to require testing on other platforms
* [svn-r8161] Purpose:Albert Cheng2004-02-072-4/+2
| | | | | | | | | | | | | | | | Bug fix Description: make check without doing make first would fail to build testphdf5. Solution: Put the testphdf5 back in the target of TEST_PROG_PP and removed the "testphdf" without any parameter from testph5.sh. Platforms tested: copper parallel. This is not relevant to non-parallel cases. Misc. update:
* [svn-r8159] Purpose: Disable a test.Raymond Lu2004-02-061-3/+9
| | | | | | | | | Description: Temporarily disable float(or double) - unsigned long long software conversion because there is a bug in pgcc compiler. Will enable it once the problem is solved. Platforms tested: RH 8
* [svn-r8158] Purpose:Quincey Koziol2004-02-0616-563/+623
| | | | | | | | | | | | | | | | | Code cleanup/optimization Description: Query property list values once, at the beginning of the I/O routines, instead of querying the property list values multiple (lots!) of times in lower level routines. Solution: Create "property list caches" for internal library queries of the property list values. Platforms tested: IBM p690 (copper) w/parallel & fphdf5 h5committest
* [svn-r8157] Purpose:Quincey Koziol2004-02-064-49/+82
| | | | | | | | | | | | Code cleanup/optimization Description: Hoist property list queries up out of inner loops to cache the values at a higher level and pass them into the lower-level routines. Platforms tested: IBM p690 (copper) w/parallel & fphdf5 h5committest
* [svn-r8154] Purpose:Quincey Koziol2004-02-053-19/+25
| | | | | | | | | | | Code cleanup Description: Minor tweaks, cleanups & optimizations to new bit operation routines. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r8153] *** empty log message ***Raymond Lu2004-02-045-6/+517
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* [svn-r8152] Purpose: new feature.Raymond Lu2004-02-041-1/+3
| | | | | | | | | | | Description: software conversion from float to integer(integer to float hasn't be done yet). Solution: This is the software conversion. Platforms tested: h5committest Misc. update: RELEASE.txt
* [svn-r8151] Purpose:Quincey Koziol2004-02-044-185/+176
| | | | | | | | | | | | Bug fix Description: Fix h5tools routines to not try to call MPI_Init() unless an MPI-based VFD is actually used. Platforms tested: FreeBSD 4.9 (sleipnir) w/parallel Linux 2.4 (verbena) w/parallel
* [svn-r8150] Purpose:Pedro Vicente Nunes2004-02-047-6/+9
| | | | | | | | | | | | | introduced the constant H5Z_FILTER_ALL, used to remove all filters in H5Premove_filter Description: Solution: Platforms tested: linux Misc. update:
* [svn-r8149] Pedro Vicente Nunes2004-02-0413-47/+47
| | | | | | | | | | | | | | Purpose: replaced name of delete filter with remove filter for the new function H5Premove_filter Description: Solution: Platforms tested: linux Misc. update:
* [svn-r8144] Purpose:Quincey Koziol2004-02-021-64/+18
| | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: Revert the optimization to the MPI-I/O VFD from earlier this week that eliminated calling MPI_File_set_size() when a file was truncated. This doesn't work because of the way we track the 'eoa' (end of allocated space) in the file: we just advance the eoa value when space is allocated in the file and we don't zero out the space in the file. This causes a problem where we assume that all "newly allocated" space in the file contains zero bytes, but if we don't call MPI_File_set_size(), the file can contain the previous data (if the file previously existed) and not zeros. Unfortunately, because we allow independent raw data parallel I/O, there is no way to address this issue. :-( Solution: Revert to previous method of retrieving the file's size, etc. from before the optimization. Platforms tested: FreeBSD 4.9 (sleipnir) w/parallel too minor to require h5committest.
* [svn-r8143] Purpose:Quincey Koziol2004-02-028-185/+293
| | | | | | | | | | | | | | New Feature. (Contributed by Robb) Description: Allow h5ls to specify a VFL with the '--vfl=' command line flag. Add MPI-I/O & MPI-POSIX VFL drivers to list of drivers available for h5ls and h5dump. Platforms tested: FreeBSD 4.9 (sleipnir) w/parallel h5committested
* [svn-r8142] Purpose:Quincey Koziol2004-02-021-1/+10
| | | | | | | | | | | Fix build with C++ compiler Description: Add file driver header files for prototypes. Platforms tested: FreeBSD 4.9 (sleipnir) w/CC=g++ too obscure to require h5committest
* [svn-r8140] Purpose:Quincey Koziol2004-02-011-1/+1
| | | | | | | | | | | | Bug fix Description: Move assertion to allow closing non-HDF5 files with the MPI-I/O VFD to work correctly again. Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r8139] Purpose:Quincey Koziol2004-01-312-10/+9
| | | | | | | | | | Code cleanup Description: Clean up compiler warnings. Platforms tested: h5committested
* [svn-r8137] Purpose:Quincey Koziol2004-01-313-2/+202
| | | | | | | | | | | Bug fix. Description: Allow H5Tget_native_type() to handle opaque fields in compound datatypes. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r8136] Purpose:Quincey Koziol2004-01-315-16/+29
| | | | | | | | | | | | | Optimization Description: Speed up various parts of the library by setting a global variable for the endianness of the machine at library startup and use that variable instead of repeatedly querying the endianness of the native int datatype. Platforms tested: IBM p690 (copper) too minor to require h5committest
* [svn-r8135] Purpose:Quincey Koziol2004-01-311-15/+11
| | | | | | | | | | | | Optimization Description: Speed up core ID lookup routine (H5I_find_id) by re-structuring the logic to reduce the number of 'if' statements. Platforms tested: IBM p690 (copper) too minor to require h5committest
* [svn-r8134] Purpose:Quincey Koziol2004-01-3127-3/+348
| | | | | | | | | | | | | | | | Code cleanup Description: Add destructor to match constructor fr VFLs when they are shut down by the library. Solution: Added H5FD_*_term() routines to "undo" changes made in H5FD_*_init() routines. Platforms tested: IBM p690 (copper) too minor to require h5committest
* [svn-r8133] Purpose:Quincey Koziol2004-01-311-3/+7
| | | | | | | | | | | | | Optimization Description: Improve the time this takes to run by hoisting a check for the signed-ness of the source and destination datatypes out of inner loop. (Speeds up test time by almost 1/3) Platforms tested: IBM p690 (copper) too minor for h5committest
* [svn-r8132] Purpose:Quincey Koziol2004-01-311-2/+2
| | | | | | | | | | | Bug fix Description: Update debugging and profiling flags to include more information. Platforms tested: IBM p690 (copper) too obscure for h5committest
* [svn-r8131] Purpose:Quincey Koziol2004-01-311-1/+1
| | | | | | | | | | | Bug fix Description: Add the debugging flag (-g) to profiling builds. Platforms tested: FreeBSD 4.9 (sleipnir) too obscure for h5committest
* [svn-r8130] Purpose:Quincey Koziol2004-01-312-4/+2
| | | | | | | | | | | Bug fix Description: Address the failure in the FORTRAN builds by making some more of the MPI-related typedefs in the library available outside of parallel builds. Platforms tested: Linux 2.4 (verbena) w/FORTRAN & C++
* [svn-r8129] Purpose:Quincey Koziol2004-01-311-1/+1
| | | | | | | | | | | | Bug fix Description: Include the private H5FD header instead of the public one, to address a failure in building the library with C++ compiler. Platforms tested: FreeBSD 4.9 (sleipnit) w/CC=g++ not appropriate for h5committest
* [svn-r8128] Purpose:Quincey Koziol2004-01-3111-741/+1103
| | | | Update dependencies after restructuring of MPI stuff
* [svn-r8127] Purpose:Quincey Koziol2004-01-313-5/+13
| | | | | | | | | | | Bug fix Description: Fix a couple of bugaboos in the serial build that crept in Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r8126] Purpose:Quincey Koziol2004-01-3131-1187/+1139
| | | | | | | | | | | | | | | | | Bug fix/optimization Description: Address slowdown in MPI-I/O file metadata operations that was introduced mid-stream. We now _require_ a POSIX compliant parallel file system for the MPI-I/O file driver (as well as for the MPI-POSIX file driver). Also optimized file open operation when the file is being created by reducing the number of collective & syncronizing calls. Additionally, refactor the MPI routines into a common place, eliminating duplicated code. Platforms tested: FreeBSD 4.9 (sleipnir) w/parallel h5committest
* [svn-r8124] Purpose:Quincey Koziol2004-01-291-3/+45
| | | | | Updated with valid values for 'filter' parameter for new H5Pdelete_filter routine.
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