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* CMake: MINGW implies WIN32Michel Zou2020-10-3014-32/+33
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* Merge pull request #62 from byrnHDF/developLarry Knox2020-10-299-245/+1844
|\ | | | | HDFFV-10868 - add H5Sselect API java wrappers.
| * HDFFV-10868 Corrections from reviewAllen Byrne2020-10-292-22/+22
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| * HDFFV-10868 - add noteAllen Byrne2020-10-281-0/+9
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| * HDFFV-10868 - add H5Sselect API java wrappers.Allen Byrne2020-10-278-244/+1834
| | | | | | Also added javadoc comments to H5E and H5s constants.
* | Merge pull request #64 from derobins/minor/vfd_warning_cleanupLarry Knox2020-10-2913-58/+34
|\ \ | |/ |/| Fixes minor issues in various virtual file drivers
| * Fixes minor issues in various virtual file driversDana Robinson2020-10-2913-58/+34
|/ | | | | | | | | | | | - HDFS VFD files now ignored in the Autotools when the HDFS VFD is not being built. - All VFD init code uses idiomatic H5I_INVALID_HID instead of -1 or FAIL. - The HDFS VFD now includes H5FDdrvr_module.h in the right place. - The HDFS tests in test/hdfs.c no longer pass NULL to VERIFY macros, which raised warnings. - Minor tweaks to fix const, unused variables, etc. warnings in several VFDs.
* Merge pull request #59 from derobins/trivial/HDprefixLarry Knox2020-10-2467-360/+444
|\ | | | | HD prefix updates in src/ and test/
| * Restores erroneously deleted key_id field from S3 VFDDana Robinson2020-10-241-1/+1
| | | | | | | | | | Accidentally deleted while preparing the PR. Only existed in a branch.
| * HD prefix updates in src/ and test/Dana Robinson2020-10-2467-361/+445
| | | | | | | | | | | | | | Adds missing HD prefixes to API calls in src and test. Adds some extra processing to bin/checkposix to keep the noise levels down when running the script (not comprehensive).
* | Merge pull request #56 from derobins/minor/implicit_fallthroughLarry Knox2020-10-237-3/+39
|\ \ | |/ |/| Removes -Wimplicit-fallthrough=5 from the gcc warnings
| * Removes -Wimplicit-fallthrough=5 from the gcc warningsDana Robinson2020-10-227-3/+39
| | | | | | | | | | | | | | | | | | | | | | | | -Wimplicit-fallthrough=3 is added by -Wextra, which we already set. Bumping the warning level only changes how fall-through comments are parsed, with level 5 turning off fall-through comments entirely. This is unnecessary and results in having to do extra work to squash warnings when included external code uses fall-through. This change also adds /* FALLTHROUGH */ comments where H5_ATTR_FALLTHROUGH is used so compilers that don't use attributes but do respect fall-through comments don't raise spurious warnings.
* | Merge pull request #55 from byrnHDF/developLarry Knox2020-10-223-14/+14
|\ \ | |/ |/| Correct SZ options for building plugins
| * Correct SZ options for building pluginsAllen Byrne2020-10-213-14/+14
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* Merge pull request #49 from byrnHDF/developLarry Knox2020-10-202-1/+3
|\ | | | | options corrections
| * URL and options correctionsAllen Byrne2020-10-192-1/+3
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* | Merge pull request #47 from byrnHDF/developLarry Knox2020-10-195-17/+18
|\ \ | |/ | | Whitespace and url correction
| * Whitespace and url correctionAllen Byrne2020-10-195-17/+18
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* Update javadoc comments to reduce warnings (#41)Allen Byrne2020-10-1644-98/+2964
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* Merge pull request #37 from takluyver/description-errnoLarry Knox2020-10-151-0/+6
|\ | | | | Note that the description for system errors may be used by h5py
| * More general message about using description for errnoThomas Kluyver2020-10-151-2/+6
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| * Note that the description for system errors may be used by h5pyThomas Kluyver2020-10-151-0/+2
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* Merge pull request #31 from byrnHDF/developLarry Knox2020-10-093-5/+4
|\ | | | | Comment adjustments
| * Comment adjustmentsAllen Byrne2020-10-083-5/+4
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* Merge pull request #25 from byrnHDF/developLarry Knox2020-10-075-130/+18
|\ | | | | gitub workflow changes
| * Remove obsolete fileAllen Byrne2020-10-072-112/+0
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| * Merge remote-tracking branch 'origin/develop' into developAllen Byrne2020-10-0741-14551/+14431
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* | Update reformatting settings, trace wrapping, and printf-format strings (#22)Quincey Koziol2020-10-0641-14551/+14431
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Add BEGIN_FUNC / CATCH / END_FUNC to macros * Remove incorrect trailing '{' * Update trace script to wrap H5TRACE macros at 110 characters and improve comments for code that performs this operation. * Clean up printf-formatting in H5public.h and correct some oversights in the code. * Reformat with BEGIN_FUNC / END_FUNC handled correctly by clang-format * Run clang-format on changes. * Correct H5_SIZEOF_HSIZE_T/H5_SIZEOF_HSSIZE_T macros to match typedef. * And make the undef value match also. * Update comment * Update clang-format actions to exclude generated files. * Post-process generated H5LTparse.h file as well as H5LTparse.c file. * Fix formatting * Update version of github clang-format action
| * Update code ownersAllen Byrne2020-10-071-3/+3
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| * Merge branch 'develop' of https://github.com/HDFGroup/hdf5.git into developAllen Byrne2020-10-060-0/+0
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* | Fix VFD h5repacktest (#20)Allen Byrne2020-10-067-137/+141
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * h5repacktest VFD fix and formatting changes * Fix memory leak in H5PL__find_plugin_in_path When encountering a directory, the current loop iteration was skipped without freeing the memory allocated for the path. * Refactor parser GCC diagnostic statements * genparser on jelly with default bison/flex Co-authored-by: Michael Kuhn <michael.kuhn@ovgu.de>
* | Merge pull request #15 from lrknox/developLarry Knox2020-10-052-10/+7
|\ \ | | | | | | Correct entries related to --enable-build-mode and --enable-profiling in
| * | Correct entries related to --enable-build-mode and --enable-profiling inLarry Knox2020-10-032-10/+7
| | | | | | | | | | | | INSTALL file, and remove obsolete SZIP paragraph from COPYING file.
* | | Merge pull request #12 from byrnHDF/developLarry Knox2020-10-0510-23/+23
|\ \ \ | | | | | | | | HDFFV-11096 fix typo in h5dump usage text
* \ \ \ Merge pull request #16 from michaelkuhn/fix-plugin-path-leakLarry Knox2020-10-051-1/+3
|\ \ \ \ | | | | | | | | | | Fix memory leak in H5PL__find_plugin_in_path
| * | | | Fix memory leak in H5PL__find_plugin_in_pathMichael Kuhn2020-10-051-1/+3
|/ / / / | | | | | | | | | | | | | | | | When encountering a directory, the current loop iteration was skipped without freeing the memory allocated for the path.
| | | * Update for minimum of two ownersAllen Byrne2020-10-061-12/+12
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| | | * Correct entries related to --enable-build-mode and --enable-profiling inLarry Knox2020-10-062-10/+7
| | | | | | | | | | | | | | | | INSTALL file, and remove obsolete SZIP paragraph from COPYING file.
| | | * github environment variable changeAllen Byrne2020-10-062-4/+4
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| | | * genparser on jelly with default bison/flexAllen Byrne2020-10-062-90/+90
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| | | * Refactor parser GCC diagnostic statementsAllen Byrne2020-10-063-34/+44
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| | | * Fix memory leak in H5PL__find_plugin_in_pathMichael Kuhn2020-10-051-1/+3
| | | | | | | | | | | | | | | | | | | | When encountering a directory, the current loop iteration was skipped without freeing the memory allocated for the path.
| | | * h5repacktest VFD fix and formatting changesAllen Byrne2020-10-053-13/+7
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| * | HDFFV-11096 replace backticks with doublequotesAllen Byrne2020-10-0410-23/+23
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| * | HDFFV-11096 fix typo in h5dump usage textAllen Byrne2020-10-039-9/+9
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* | Merge pull request #11 from byrnHDF/developLarry Knox2020-10-031-0/+1
|\ \ | |/ |/| Add mingw define
| * Add mingw defineAllen Byrne2020-10-021-0/+1
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* Merge pull request #2917 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-10-022-2/+9
|\ | | | | | | | | * commit '1a4c5cc22c0f8aac568f39e67d695d906cf17c87': Actions updates
| * Actions updatesAllen Byrne2020-10-022-2/+9
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* Merge pull request #2906 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developLarry Knox2020-10-021118-319927/+322123
|\ | | | | | | | | * commit 'b2d661b508a7fc7a2592c13bc6bdc175551f075d': Clang-format of source files